AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043025.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043025.01.T01 MTR_8g027775 81.203 133 3 1 1 111 124 256 4.13e-66 209
MsG0880043025.01.T01 MTR_8g027780 72.932 133 14 1 1 111 128 260 1.17e-57 184
MsG0880043025.01.T01 MTR_8g027780 72.932 133 14 1 1 111 128 260 1.95e-56 184
MsG0880043025.01.T01 MTR_8g027770 65.693 137 25 1 1 115 223 359 4.43e-52 174
MsG0880043025.01.T01 MTR_8g097000 50.000 100 50 0 12 111 343 442 1.80e-29 111
MsG0880043025.01.T01 MTR_2g055850 45.098 102 41 6 12 108 146 237 2.39e-15 70.9
MsG0880043025.01.T01 MTR_4g112340 41.237 97 47 4 12 105 152 241 1.71e-13 65.9
MsG0880043025.01.T01 MTR_4g459350 42.683 82 46 1 24 105 107 187 6.64e-12 60.5
MsG0880043025.01.T01 MTR_4g059460 42.683 82 46 1 24 105 110 190 5.48e-11 58.5
MsG0880043025.01.T01 MTR_2g043360 42.683 82 46 1 24 105 107 187 9.90e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043025.01.T01 AT5G08620 60.902 133 30 1 1 111 103 235 1.33e-48 163
MsG0880043025.01.T01 AT5G08610 60.902 133 30 1 1 111 405 537 1.86e-46 159
MsG0880043025.01.T01 AT5G63630 60.150 133 31 1 1 111 77 209 6.92e-45 152
MsG0880043025.01.T01 AT5G63630 60.150 133 31 1 1 111 271 403 7.29e-45 154
MsG0880043025.01.T01 AT1G63250 53.465 101 46 1 12 111 384 484 3.87e-30 113
MsG0880043025.01.T01 AT2G07750 53.465 101 46 1 12 111 431 531 4.54e-29 110
MsG0880043025.01.T01 AT3G18600 44.000 100 44 4 12 108 145 235 6.21e-16 72.8
MsG0880043025.01.T01 AT5G65900 43.564 101 43 5 12 108 210 300 3.18e-15 70.9
MsG0880043025.01.T01 AT2G40700 42.045 88 47 2 21 108 97 180 6.34e-12 61.2

Find 56 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGCACTCTGGACAGCAGC+AGG 0.263906 8:-17852870 None:intergenic
CATAGTAGCAGGTGGAAATT+TGG 0.274155 8:+17853069 MsG0880043025.01.T01:five_prime_UTR
TTGGAGGTTGTTGGTGGTGG+TGG 0.292664 8:+17853088 MsG0880043025.01.T01:five_prime_UTR
AGCAGCAGGGCTCATGGTCT+TGG 0.327007 8:-17852856 None:intergenic
AACGGTTCTTCTCCTTCATC+GGG 0.343799 8:+17852942 MsG0880043025.01.T01:five_prime_UTR
TTCACAACAACTTCTATTGA+TGG 0.348383 8:-17854977 None:intergenic
GAGGTTGTTGGTGGTGGTGG+TGG 0.348558 8:+17853091 MsG0880043025.01.T01:five_prime_UTR
ATATGATCTTTAAGCCTTCC+AGG 0.348666 8:-17855749 None:intergenic
AATTTGGAGGTTGTTGGTGG+TGG 0.353163 8:+17853085 MsG0880043025.01.T01:five_prime_UTR
TGGTGGTGGTGATGTTGGTC+TGG 0.364835 8:+17853105 MsG0880043025.01.T01:five_prime_UTR
TGATGTTGGTCTGGAATTAT+TGG 0.382868 8:+17853114 MsG0880043025.01.T01:five_prime_UTR
GCCTTCCAGGAGTAGCAATA+AGG 0.390362 8:-17855736 None:intergenic
CTTCTTATTTAAGTGATTCA+AGG 0.392519 8:+17853145 MsG0880043025.01.T01:five_prime_UTR
ATGATACTTAAGCAGTTTAG+TGG 0.414151 8:-17855095 None:intergenic
TAACGGTTCTTCTCCTTCAT+CGG 0.421538 8:+17852941 MsG0880043025.01.T01:five_prime_UTR
GGAAATTTGGAGGTTGTTGG+TGG 0.428462 8:+17853082 MsG0880043025.01.T01:five_prime_UTR
CCTGGACCTACCGTGCTTCT+CGG 0.440813 8:-17852895 None:intergenic
GACATGCAAGCTCCCGAGTT+GGG 0.446895 8:-17855057 None:intergenic
GCTTCTCGGCAGCCGCACTC+TGG 0.455070 8:-17852881 None:intergenic
GGTGGAAATTTGGAGGTTGT+TGG 0.455646 8:+17853079 MsG0880043025.01.T01:five_prime_UTR
CATACAACAAGAACAAGAAT+TGG 0.465536 8:-17855034 None:intergenic
TTCTTGTTGTATGCCCAACT+CGG 0.466618 8:+17855044 MsG0880043025.01.T01:CDS
GATCATATTGCTAATACTGC+TGG 0.472739 8:+17855764 MsG0880043025.01.T01:CDS
ATTGGTGCTCAAGTTGTGAT+TGG 0.473496 8:+17855124 MsG0880043025.01.T01:CDS
AATAGTCATTTCCTCATATC+CGG 0.478068 8:-17854156 None:intergenic
GGTCAAGGATGCCGGATATG+AGG 0.482900 8:+17854145 MsG0880043025.01.T01:five_prime_UTR
CAGATCCTTATTGCTACTCC+TGG 0.497102 8:+17855731 MsG0880043025.01.T01:intron
CTCCCCACTGTCATTAAAAG+AGG 0.505390 8:+17854124 MsG0880043025.01.T01:five_prime_UTR
AGGGCTCATGGTCTTGGCTG+CGG 0.506520 8:-17852850 None:intergenic
CCGCACTCTGGACAGCAGCA+GGG 0.512218 8:-17852869 None:intergenic
GATAATGAAGTCATAGTAGC+AGG 0.515195 8:+17853058 MsG0880043025.01.T01:five_prime_UTR
AAGAAGAAGAATAACGTTAA+CGG 0.515572 8:+17852924 MsG0880043025.01.T01:intron
TTAAAAGAGGTCAAGGATGC+CGG 0.519973 8:+17854137 MsG0880043025.01.T01:five_prime_UTR
CTGGACAGCAGCAGGGCTCA+TGG 0.527999 8:-17852862 None:intergenic
GAAGAAAAGAAAAGTGATGA+TGG 0.548124 8:+17852965 MsG0880043025.01.T01:five_prime_UTR
TCCTTATTGCTACTCCTGGA+AGG 0.549175 8:+17855735 MsG0880043025.01.T01:CDS
TGAGGAAATGACTATTGTGC+AGG 0.549197 8:+17854163 MsG0880043025.01.T01:exon
CTTAAGTATCATCCCACCAT+TGG 0.551005 8:+17855106 MsG0880043025.01.T01:CDS
AGTAGCAGGTGGAAATTTGG+AGG 0.552353 8:+17853072 MsG0880043025.01.T01:five_prime_UTR
AATCACAACTTGAGCACCAA+TGG 0.558229 8:-17855122 None:intergenic
TCTTGTTGTATGCCCAACTC+GGG 0.558268 8:+17855045 MsG0880043025.01.T01:CDS
TGACATGCAAGCTCCCGAGT+TGG 0.563498 8:-17855058 None:intergenic
GCTCATGGTCTTGGCTGCGG+CGG 0.575550 8:-17852847 None:intergenic
TTTGCATCTAAGCTTATGGG+GGG 0.578308 8:+17855788 MsG0880043025.01.T01:CDS
CACAACTTGAGCACCAATGG+TGG 0.581449 8:-17855119 None:intergenic
ACTGTCATTAAAAGAGGTCA+AGG 0.591158 8:+17854130 MsG0880043025.01.T01:five_prime_UTR
AGTGCGGCTGCCGAGAAGCA+CGG 0.591389 8:+17852885 MsG0880043025.01.T01:five_prime_UTR
TGATGGTGATGATTTGAGAA+AGG 0.601075 8:+17852982 MsG0880043025.01.T01:five_prime_UTR
CCCTGCTGCTGTCCAGAGTG+CGG 0.601393 8:+17852869 MsG0880043025.01.T01:five_prime_UTR
GGTGCTCAAGTTGTGATTGG+AGG 0.606192 8:+17855127 MsG0880043025.01.T01:CDS
AATGAAGTCATAGTAGCAGG+TGG 0.631008 8:+17853061 MsG0880043025.01.T01:five_prime_UTR
GCAGGAAGCAACATCTCCAA+AGG 0.647193 8:+17854181 MsG0880043025.01.T01:CDS
ACAACTTGAGCACCAATGGT+GGG 0.653636 8:-17855118 None:intergenic
ATCAGCTTCATCAAGCACCA+AGG 0.664460 8:-17855817 None:intergenic
AAATCTCCACCAAATAATCG+TGG 0.685772 8:+17854998 MsG0880043025.01.T01:CDS
ACGGTTCTTCTCCTTCATCG+GGG 0.712916 8:+17852943 MsG0880043025.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGCAAAATATAAAAAATA+CGG + Chr8:17853620-17853639 MsG0880043025.01.T01:intron 10.0%
!! CAATAATTAATATAAAGAAA+TGG - Chr8:17855335-17855354 None:intergenic 10.0%
!! TTAAAATATTTGATTCAAAA+TGG + Chr8:17855281-17855300 MsG0880043025.01.T01:intron 10.0%
!!! TTTGAATCAAATATTTTAAA+AGG - Chr8:17855280-17855299 None:intergenic 10.0%
!! TATATTGAGCTTATTTATAA+CGG + Chr8:17854329-17854348 MsG0880043025.01.T01:intron 15.0%
!!! AAATATTTTAAAAGGTTTGT+TGG - Chr8:17855272-17855291 None:intergenic 15.0%
!!! AATATTTTAAAAGGTTTGTT+GGG - Chr8:17855271-17855290 None:intergenic 15.0%
!!! TGTTTAGAATATTAATAATC+AGG + Chr8:17854799-17854818 MsG0880043025.01.T01:intron 15.0%
!!! TGTTTTTTGTTTTATACATA+TGG + Chr8:17854680-17854699 MsG0880043025.01.T01:intron 15.0%
!!! TTTGTTTTCGAAAATAATTA+AGG + Chr8:17853304-17853323 MsG0880043025.01.T01:intron 15.0%
!!! TTTTTGATATTGTATGTTTT+AGG + Chr8:17853382-17853401 MsG0880043025.01.T01:intron 15.0%
!! AAGCGAATTATTATATTGAA+GGG + Chr8:17855527-17855546 MsG0880043025.01.T01:intron 20.0%
!! CAAACAAATAAAGTTAAATC+TGG - Chr8:17855684-17855703 None:intergenic 20.0%
!! CTACAAAAAAAAAATTGTTG+TGG - Chr8:17855220-17855239 None:intergenic 20.0%
!! GAATAAACAATCTACTTAAT+TGG + Chr8:17854577-17854596 MsG0880043025.01.T01:intron 20.0%
!! TAAAAAGAACTCAAAAAGAA+AGG + Chr8:17853012-17853031 MsG0880043025.01.T01:five_prime_UTR 20.0%
!!! AAAATACGGTTAAATTGTTT+TGG + Chr8:17853634-17853653 MsG0880043025.01.T01:intron 20.0%
!!! CACAACAATTTTTTTTTTGT+AGG + Chr8:17855218-17855237 MsG0880043025.01.T01:intron 20.0%
!!! TGTGTTTCTTTTCATAAATT+AGG + Chr8:17853181-17853200 MsG0880043025.01.T01:intron 20.0%
!!! TGTTTTATTTTCCTTAAAGA+TGG + Chr8:17853331-17853350 MsG0880043025.01.T01:intron 20.0%
!!! TTTCTTTTTGAGTTCTTTTT+AGG - Chr8:17853013-17853032 None:intergenic 20.0%
!!! TTTTTGTTTTATACATATGG+AGG + Chr8:17854683-17854702 MsG0880043025.01.T01:intron 20.0%
! AAGAAAAAAGAAACAACCTT+TGG - Chr8:17854200-17854219 None:intergenic 25.0%
! AAGAAAATAAATCGTAGTTG+TGG + Chr8:17854246-17854265 MsG0880043025.01.T01:intron 25.0%
! AAGAAGAAGAATAACGTTAA+CGG + Chr8:17852924-17852943 MsG0880043025.01.T01:intron 25.0%
! AAGTAGATTGTTTATTCCAA+AGG - Chr8:17854574-17854593 None:intergenic 25.0%
! ACATAAAGTAACCATCTTTA+AGG - Chr8:17853345-17853364 None:intergenic 25.0%
! GAAGCGAATTATTATATTGA+AGG + Chr8:17855526-17855545 MsG0880043025.01.T01:intron 25.0%
! GTTTAAGCCATGAAAATAAA+AGG - Chr8:17855590-17855609 None:intergenic 25.0%
! TAATTATGCATACATCAAGA+AGG + Chr8:17855499-17855518 MsG0880043025.01.T01:intron 25.0%
! TCTTTGCATGTATAATGATT+AGG + Chr8:17853871-17853890 MsG0880043025.01.T01:intron 25.0%
! TGTATAAGTGGTTTATTCTT+TGG + Chr8:17853511-17853530 MsG0880043025.01.T01:intron 25.0%
! TTCCAGAAACATTTAAACAA+AGG - Chr8:17853417-17853436 None:intergenic 25.0%
!! CTTCTTATTTAAGTGATTCA+AGG + Chr8:17853145-17853164 MsG0880043025.01.T01:five_prime_UTR 25.0%
!! TTAAATCTGGAAAACTTGTT+TGG - Chr8:17855671-17855690 None:intergenic 25.0%
!!! AAAAGACTTTTAACTCTTTC+CGG + Chr8:17853821-17853840 MsG0880043025.01.T01:intron 25.0%
!!! AAAGGTTGTTTCTTTTTTCT+TGG + Chr8:17854199-17854218 MsG0880043025.01.T01:intron 25.0%
!!! AGGTTTTTTTGTTAATGAGT+TGG + Chr8:17853201-17853220 MsG0880043025.01.T01:intron 25.0%
!!! TTGTTTAAATGTTTCTGGAA+GGG + Chr8:17853417-17853436 MsG0880043025.01.T01:intron 25.0%
!!! TTTGTTTAAATGTTTCTGGA+AGG + Chr8:17853416-17853435 MsG0880043025.01.T01:intron 25.0%
AATAAAGAGACGTACCAAAA+AGG - Chr8:17854429-17854448 None:intergenic 30.0%
AATAGTCATTTCCTCATATC+CGG - Chr8:17854159-17854178 None:intergenic 30.0%
AATATTCAGAATATGAGCTG+TGG + Chr8:17853456-17853475 MsG0880043025.01.T01:intron 30.0%
ACATAAAGCAACAAACTTCA+AGG - Chr8:17853236-17853255 None:intergenic 30.0%
AGATTAATGCAGCATGATTA+TGG - Chr8:17855612-17855631 None:intergenic 30.0%
AGTCATACAACTCATATAGT+GGG + Chr8:17853976-17853995 MsG0880043025.01.T01:intron 30.0%
ATAATCATGCTGCATTAATC+TGG + Chr8:17855611-17855630 MsG0880043025.01.T01:intron 30.0%
ATGACAAATGTCATAAAGCT+TGG + Chr8:17853722-17853741 MsG0880043025.01.T01:intron 30.0%
ATGATACTTAAGCAGTTTAG+TGG - Chr8:17855098-17855117 None:intergenic 30.0%
CATACAACAAGAACAAGAAT+TGG - Chr8:17855037-17855056 None:intergenic 30.0%
CATTCAAAAAAATTCTTGCC+AGG + Chr8:17855177-17855196 MsG0880043025.01.T01:CDS 30.0%
CGAACAAGTAAAACAAAAAG+GGG - Chr8:17854728-17854747 None:intergenic 30.0%
GAAGAAAAGAAAAGTGATGA+TGG + Chr8:17852965-17852984 MsG0880043025.01.T01:five_prime_UTR 30.0%
GATAATGTATGCTTTCTTAC+TGG + Chr8:17853907-17853926 MsG0880043025.01.T01:intron 30.0%
GATCTCTTTACTTAACTCAT+TGG + Chr8:17854599-17854618 MsG0880043025.01.T01:intron 30.0%
GCGAACAAGTAAAACAAAAA+GGG - Chr8:17854729-17854748 None:intergenic 30.0%
GTATAATGATTAGGTCTGTA+TGG + Chr8:17853880-17853899 MsG0880043025.01.T01:intron 30.0%
GTATAGATATGCAGTAAACT+AGG - Chr8:17854044-17854063 None:intergenic 30.0%
TAGTCATACAACTCATATAG+TGG + Chr8:17853975-17853994 MsG0880043025.01.T01:intron 30.0%
TTACTCCAATTAACCTTTCT+AGG + Chr8:17854357-17854376 MsG0880043025.01.T01:intron 30.0%
TTCACAACAACTTCTATTGA+TGG - Chr8:17854980-17854999 None:intergenic 30.0%
TTGAATTTGGAAATTGGTGT+GGG + Chr8:17853931-17853950 MsG0880043025.01.T01:intron 30.0%
TTGAGTGCATTAGTAGTTAA+TGG + Chr8:17854458-17854477 MsG0880043025.01.T01:intron 30.0%
! GTCCTTTGTTTAAATGTTTC+TGG + Chr8:17853412-17853431 MsG0880043025.01.T01:intron 30.0%
!! AAAGACTTTTAACTCTTTCC+GGG + Chr8:17853822-17853841 MsG0880043025.01.T01:intron 30.0%
!! CTAAGATGATGATTTGCTAA+AGG - Chr8:17855647-17855666 None:intergenic 30.0%
!! GCTGTTTTCATTAGCTATAT+TGG + Chr8:17853668-17853687 MsG0880043025.01.T01:intron 30.0%
!! TGATTTTGACCACGATTATT+TGG - Chr8:17855010-17855029 None:intergenic 30.0%
!! TTTGTTTGTGTTTTTGACCA+AGG - Chr8:17853802-17853821 None:intergenic 30.0%
!!! AAGATCGCCTTTTATTTTCA+TGG + Chr8:17855580-17855599 MsG0880043025.01.T01:intron 30.0%
!!! CTTTTTGTTTTACTTGTTCG+CGG + Chr8:17854728-17854747 MsG0880043025.01.T01:intron 30.0%
AAAACAAAAAGGGGTCCAAA+CGG - Chr8:17854719-17854738 None:intergenic 35.0%
AAATCTCCACCAAATAATCG+TGG + Chr8:17854998-17855017 MsG0880043025.01.T01:CDS 35.0%
ACTGTCATTAAAAGAGGTCA+AGG + Chr8:17854130-17854149 MsG0880043025.01.T01:five_prime_UTR 35.0%
ATATGATCTTTAAGCCTTCC+AGG - Chr8:17855752-17855771 None:intergenic 35.0%
ATGATTAGGTCTGTATGGTT+AGG + Chr8:17853885-17853904 MsG0880043025.01.T01:intron 35.0%
ATGTGAGGTTATGCTTATAC+AGG + Chr8:17854001-17854020 MsG0880043025.01.T01:intron 35.0%
CCAATTAACCTTTCTAGGTA+AGG + Chr8:17854362-17854381 MsG0880043025.01.T01:intron 35.0%
CCTTACCTAGAAAGGTTAAT+TGG - Chr8:17854365-17854384 None:intergenic 35.0%
CGCGAACAAGTAAAACAAAA+AGG - Chr8:17854730-17854749 None:intergenic 35.0%
CTCACACAAACATGTATAAG+TGG + Chr8:17853499-17853518 MsG0880043025.01.T01:intron 35.0%
CTTGAATTTGGAAATTGGTG+TGG + Chr8:17853930-17853949 MsG0880043025.01.T01:intron 35.0%
GAAATGATGAATCGCCATAT+CGG + Chr8:17855410-17855429 MsG0880043025.01.T01:intron 35.0%
GATAATGAAGTCATAGTAGC+AGG + Chr8:17853058-17853077 MsG0880043025.01.T01:five_prime_UTR 35.0%
GATCATATTGCTAATACTGC+TGG + Chr8:17855764-17855783 MsG0880043025.01.T01:CDS 35.0%
GCAGTAAACTAGGATAAGAA+GGG - Chr8:17854034-17854053 None:intergenic 35.0%
GTTTATTCCAAAGGTAGCTT+TGG - Chr8:17854565-17854584 None:intergenic 35.0%
TATCTATACGCTCTTGTGTA+AGG + Chr8:17854055-17854074 MsG0880043025.01.T01:intron 35.0%
TGAATTTGGAAATTGGTGTG+GGG + Chr8:17853932-17853951 MsG0880043025.01.T01:intron 35.0%
TGCAGTAAACTAGGATAAGA+AGG - Chr8:17854035-17854054 None:intergenic 35.0%
! GAGATGATTTGTGATCAACA+TGG - Chr8:17854774-17854793 None:intergenic 35.0%
! GGTTTTGCATCTAAGCTTAT+GGG + Chr8:17855785-17855804 MsG0880043025.01.T01:CDS 35.0%
! GTTTTGCATCTAAGCTTATG+GGG + Chr8:17855786-17855805 MsG0880043025.01.T01:CDS 35.0%
! TGACCTCTTTTAATGACAGT+GGG - Chr8:17854130-17854149 None:intergenic 35.0%
! TGATGGTGATGATTTGAGAA+AGG + Chr8:17852982-17853001 MsG0880043025.01.T01:five_prime_UTR 35.0%
! TGATGTTGGTCTGGAATTAT+TGG + Chr8:17853114-17853133 MsG0880043025.01.T01:five_prime_UTR 35.0%
! TTGACCTCTTTTAATGACAG+TGG - Chr8:17854131-17854150 None:intergenic 35.0%
! TTTTGACCACGATTATTTGG+TGG - Chr8:17855007-17855026 None:intergenic 35.0%
! TTTTGCATCTAAGCTTATGG+GGG + Chr8:17855787-17855806 MsG0880043025.01.T01:CDS 35.0%
!! AAAGGTTTGTTGGGTGTATA+TGG - Chr8:17855262-17855281 None:intergenic 35.0%
!! AAGACTTTTAACTCTTTCCG+GGG + Chr8:17853823-17853842 MsG0880043025.01.T01:intron 35.0%
!! ACTGGCTTGAATTTGGAAAT+TGG + Chr8:17853925-17853944 MsG0880043025.01.T01:intron 35.0%
!! CTTTCTTACTGGCTTGAATT+TGG + Chr8:17853918-17853937 MsG0880043025.01.T01:intron 35.0%
!! GATGATGATTTGCTAAAGGT+TGG - Chr8:17855643-17855662 None:intergenic 35.0%
!! TGGTTTTGCATCTAAGCTTA+TGG + Chr8:17855784-17855803 MsG0880043025.01.T01:CDS 35.0%
!!! AGTTGTGGTGTCATTTTTTG+TGG + Chr8:17854261-17854280 MsG0880043025.01.T01:intron 35.0%
!!! TTCTTTTTTCTTGGCCATTG+AGG + Chr8:17854208-17854227 MsG0880043025.01.T01:intron 35.0%
AATCACAACTTGAGCACCAA+TGG - Chr8:17855125-17855144 None:intergenic 40.0%
AATGAAGTCATAGTAGCAGG+TGG + Chr8:17853061-17853080 MsG0880043025.01.T01:five_prime_UTR 40.0%
AGATTATTCCACGTCCTCAA+TGG - Chr8:17854225-17854244 None:intergenic 40.0%
ATCCGATGCTCGTATTGTAT+CGG + Chr8:17855444-17855463 MsG0880043025.01.T01:intron 40.0%
CATAGTAGCAGGTGGAAATT+TGG + Chr8:17853069-17853088 MsG0880043025.01.T01:five_prime_UTR 40.0%
CTGAACACTTGTCAAATCTG+TGG - Chr8:17854103-17854122 None:intergenic 40.0%
CTTAAGTATCATCCCACCAT+TGG + Chr8:17855106-17855125 MsG0880043025.01.T01:CDS 40.0%
GATACGATACCTATCCGATA+TGG - Chr8:17855427-17855446 None:intergenic 40.0%
GCAAAGAAAAAGAACTCACC+TGG - Chr8:17855198-17855217 None:intergenic 40.0%
GTAAATGCCAAAGCTACCTT+TGG + Chr8:17854555-17854574 MsG0880043025.01.T01:intron 40.0%
GTAGAATCTCAGATAAGCCT+TGG + Chr8:17853782-17853801 MsG0880043025.01.T01:intron 40.0%
TAACGGTTCTTCTCCTTCAT+CGG + Chr8:17852941-17852960 MsG0880043025.01.T01:five_prime_UTR 40.0%
TGAGGAAATGACTATTGTGC+AGG + Chr8:17854163-17854182 MsG0880043025.01.T01:exon 40.0%
TGCGAGCGTCAATTAAAGTA+AGG + Chr8:17854528-17854547 MsG0880043025.01.T01:intron 40.0%
TTAAAAGAGGTCAAGGATGC+CGG + Chr8:17854137-17854156 MsG0880043025.01.T01:five_prime_UTR 40.0%
TTTGCATCTAAGCTTATGGG+GGG + Chr8:17855788-17855807 MsG0880043025.01.T01:CDS 40.0%
! ATTGGTGCTCAAGTTGTGAT+TGG + Chr8:17855124-17855143 MsG0880043025.01.T01:CDS 40.0%
! CTCATATAGTGGGAAATGTG+AGG + Chr8:17853986-17854005 MsG0880043025.01.T01:intron 40.0%
! GACCTCTTTTAATGACAGTG+GGG - Chr8:17854129-17854148 None:intergenic 40.0%
! GGGAAAAACAGTAGCCTTTT+TGG + Chr8:17854412-17854431 MsG0880043025.01.T01:intron 40.0%
! TTCTTGTTGTATGCCCAACT+CGG + Chr8:17855044-17855063 MsG0880043025.01.T01:CDS 40.0%
! TTTCTTTTCTTCCCCGATGA+AGG - Chr8:17852957-17852976 None:intergenic 40.0%
!! AGACTTTTAACTCTTTCCGG+GGG + Chr8:17853824-17853843 MsG0880043025.01.T01:intron 40.0%
AACGGTTCTTCTCCTTCATC+GGG + Chr8:17852942-17852961 MsG0880043025.01.T01:five_prime_UTR 45.0%
ACAACTTGAGCACCAATGGT+GGG - Chr8:17855121-17855140 None:intergenic 45.0%
AGTAGCAGGTGGAAATTTGG+AGG + Chr8:17853072-17853091 MsG0880043025.01.T01:five_prime_UTR 45.0%
ATTCTTCTTCTTCCGTGACC+TGG - Chr8:17852916-17852935 None:intergenic 45.0%
CAGATCCTTATTGCTACTCC+TGG + Chr8:17855731-17855750 MsG0880043025.01.T01:intron 45.0%
CAGGACATCCTTACCTAGAA+AGG - Chr8:17854373-17854392 None:intergenic 45.0%
CTCCCCACTGTCATTAAAAG+AGG + Chr8:17854124-17854143 MsG0880043025.01.T01:five_prime_UTR 45.0%
CTTTCTAGGTAAGGATGTCC+TGG + Chr8:17854371-17854390 MsG0880043025.01.T01:intron 45.0%
GATGAATCGCCATATCGGAT+AGG + Chr8:17855415-17855434 MsG0880043025.01.T01:intron 45.0%
GGAAATTTGGAGGTTGTTGG+TGG + Chr8:17853082-17853101 MsG0880043025.01.T01:five_prime_UTR 45.0%
GGTGGAAATTTGGAGGTTGT+TGG + Chr8:17853079-17853098 MsG0880043025.01.T01:five_prime_UTR 45.0%
GGTGTATATGGCAAAGCACA+AGG - Chr8:17855250-17855269 None:intergenic 45.0%
TATGGCAAAGCACAAGGCTT+AGG - Chr8:17855244-17855263 None:intergenic 45.0%
TCAGAATATGAGCTGTGGAG+TGG + Chr8:17853461-17853480 MsG0880043025.01.T01:intron 45.0%
TCCTTATTGCTACTCCTGGA+AGG + Chr8:17855735-17855754 MsG0880043025.01.T01:CDS 45.0%
! AATTTGGAGGTTGTTGGTGG+TGG + Chr8:17853085-17853104 MsG0880043025.01.T01:five_prime_UTR 45.0%
! TCTTGTTGTATGCCCAACTC+GGG + Chr8:17855045-17855064 MsG0880043025.01.T01:CDS 45.0%
!! GGGGTTTTGTGCAACTTTTG+AGG + Chr8:17853951-17853970 MsG0880043025.01.T01:intron 45.0%
!! GTTCGCGGTGAAAGTACTAA+AGG + Chr8:17854743-17854762 MsG0880043025.01.T01:intron 45.0%
!! AATAATTAATATAAAGAAAT+GGG - Chr8:17855334-17855353 None:intergenic 5.0%
ACGGTTCTTCTCCTTCATCG+GGG + Chr8:17852943-17852962 MsG0880043025.01.T01:five_prime_UTR 50.0%
ACTAGGATAAGAAGGGTCGC+AGG - Chr8:17854027-17854046 None:intergenic 50.0%
CACAACTTGAGCACCAATGG+TGG - Chr8:17855122-17855141 None:intergenic 50.0%
CGCCGATACAATACGAGCAT+CGG - Chr8:17855449-17855468 None:intergenic 50.0%
CTCCTTCACAATTCTTCCCC+CGG - Chr8:17853843-17853862 None:intergenic 50.0%
GCAGGAAGCAACATCTCCAA+AGG + Chr8:17854181-17854200 MsG0880043025.01.T01:CDS 50.0%
GCCTTCCAGGAGTAGCAATA+AGG - Chr8:17855739-17855758 None:intergenic 50.0%
TGGCCAAGGCTAAAAAGGCA+CGG + Chr8:17854391-17854410 MsG0880043025.01.T01:intron 50.0%
TGTCCTGGCCAAGGCTAAAA+AGG + Chr8:17854386-17854405 MsG0880043025.01.T01:intron 50.0%
TTCCGGGGGAAGAATTGTGA+AGG + Chr8:17853838-17853857 MsG0880043025.01.T01:intron 50.0%
TTTCTTGGCCATTGAGGACG+TGG + Chr8:17854214-17854233 MsG0880043025.01.T01:intron 50.0%
! GGTGCTCAAGTTGTGATTGG+AGG + Chr8:17855127-17855146 MsG0880043025.01.T01:CDS 50.0%
!! TTCCCGTGCCTTTTTAGCCT+TGG - Chr8:17854397-17854416 None:intergenic 50.0%
AGGTAAGGATGTCCTGGCCA+AGG + Chr8:17854377-17854396 MsG0880043025.01.T01:intron 55.0%
CTTATGGGGGGTGAAGACCT+TGG + Chr8:17855800-17855819 MsG0880043025.01.T01:CDS 55.0%
GACATGCAAGCTCCCGAGTT+GGG - Chr8:17855060-17855079 None:intergenic 55.0%
GGAGGCTGCTATAAGCCGTT+TGG + Chr8:17854701-17854720 MsG0880043025.01.T01:intron 55.0%
GGTCAAGGATGCCGGATATG+AGG + Chr8:17854145-17854164 MsG0880043025.01.T01:five_prime_UTR 55.0%
TGACATGCAAGCTCCCGAGT+TGG - Chr8:17855061-17855080 None:intergenic 55.0%
! GGCCAAGGCTAAAAAGGCAC+GGG + Chr8:17854392-17854411 MsG0880043025.01.T01:intron 55.0%
!! TGGTGGTGGTGATGTTGGTC+TGG + Chr8:17853105-17853124 MsG0880043025.01.T01:five_prime_UTR 55.0%
!! TTGGAGGTTGTTGGTGGTGG+TGG + Chr8:17853088-17853107 MsG0880043025.01.T01:five_prime_UTR 55.0%
!!! GTGCCTTTTTAGCCTTGGCC+AGG - Chr8:17854392-17854411 None:intergenic 55.0%
AGCACGGTAGGTCCAGGTCA+CGG + Chr8:17852901-17852920 MsG0880043025.01.T01:intron 60.0%
AGCAGCAGGGCTCATGGTCT+TGG - Chr8:17852859-17852878 None:intergenic 60.0%
CCTGGACCTACCGTGCTTCT+CGG - Chr8:17852898-17852917 None:intergenic 60.0%
! AGGGCTCATGGTCTTGGCTG+CGG - Chr8:17852853-17852872 None:intergenic 60.0%
!! GAGGTTGTTGGTGGTGGTGG+TGG + Chr8:17853091-17853110 MsG0880043025.01.T01:five_prime_UTR 60.0%
!! GGTGGTGGTGGTGGTGATGT+TGG + Chr8:17853100-17853119 MsG0880043025.01.T01:five_prime_UTR 60.0%
AGTGCGGCTGCCGAGAAGCA+CGG + Chr8:17852885-17852904 MsG0880043025.01.T01:five_prime_UTR 65.0%
CCCTGCTGCTGTCCAGAGTG+CGG + Chr8:17852869-17852888 MsG0880043025.01.T01:five_prime_UTR 65.0%
CCGCACTCTGGACAGCAGCA+GGG - Chr8:17852872-17852891 None:intergenic 65.0%
CTGGACAGCAGCAGGGCTCA+TGG - Chr8:17852865-17852884 None:intergenic 65.0%
! CCGAGAAGCACGGTAGGTCC+AGG + Chr8:17852895-17852914 MsG0880043025.01.T01:intron 65.0%
! GCTCATGGTCTTGGCTGCGG+CGG - Chr8:17852850-17852869 None:intergenic 65.0%
GCCGCACTCTGGACAGCAGC+AGG - Chr8:17852873-17852892 None:intergenic 70.0%
GCTTCTCGGCAGCCGCACTC+TGG - Chr8:17852884-17852903 None:intergenic 70.0%
! CGGCTGCCGAGAAGCACGGT+AGG + Chr8:17852889-17852908 MsG0880043025.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 17852844 17855829 17852844 ID=MsG0880043025.01;Name=MsG0880043025.01
Chr8 mRNA 17852844 17855829 17852844 ID=MsG0880043025.01.T01;Parent=MsG0880043025.01;Name=MsG0880043025.01.T01;_AED=0.48;_eAED=0.48;_QI=364|0.88|1|1|0.55|0.5|10|0|117
Chr8 exon 17852844 17852906 17852844 ID=MsG0880043025.01.T01:exon:3512;Parent=MsG0880043025.01.T01
Chr8 exon 17852930 17853166 17852930 ID=MsG0880043025.01.T01:exon:3513;Parent=MsG0880043025.01.T01
Chr8 exon 17854106 17854202 17854106 ID=MsG0880043025.01.T01:exon:3514;Parent=MsG0880043025.01.T01
Chr8 exon 17854974 17855198 17854974 ID=MsG0880043025.01.T01:exon:3515;Parent=MsG0880043025.01.T01
Chr8 exon 17855734 17855829 17855734 ID=MsG0880043025.01.T01:exon:3516;Parent=MsG0880043025.01.T01
Chr8 five_prime_UTR 17852844 17852906 17852844 ID=MsG0880043025.01.T01:five_prime_utr;Parent=MsG0880043025.01.T01
Chr8 five_prime_UTR 17852930 17853166 17852930 ID=MsG0880043025.01.T01:five_prime_utr;Parent=MsG0880043025.01.T01
Chr8 five_prime_UTR 17854106 17854169 17854106 ID=MsG0880043025.01.T01:five_prime_utr;Parent=MsG0880043025.01.T01
Chr8 CDS 17854170 17854202 17854170 ID=MsG0880043025.01.T01:cds;Parent=MsG0880043025.01.T01
Chr8 CDS 17854974 17855198 17854974 ID=MsG0880043025.01.T01:cds;Parent=MsG0880043025.01.T01
Chr8 CDS 17855734 17855829 17855734 ID=MsG0880043025.01.T01:cds;Parent=MsG0880043025.01.T01
Gene Sequence

>MsG0880043025.01.T01

ATGACTATTGTGCAGGAAGCAACATCTCCAAAGCTTCCATCAATAGAAGTTGTTGTGAAATCTCCACCAAATAATCGTGGTCAAAATCAAACACCAATTCTTGTTCTTGTTGTATGCCCAACTCGGGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTTAAGTATCATCCCACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAGTCTTAGTTCAGAACAGAAACGCATTCAAAAAAATTCTTGCCAGATCCTTATTGCTACTCCTGGAAGGCTTAAAGATCATATTGCTAATACTGCTGGTTTTGCATCTAAGCTTATGGGGGGTGAAGACCTTGGTGCTTGA
Protein sequence

>MsG0880043025.01.T01

MTIVQEATSPKLPSIEVVVKSPPNNRGQNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNSCQILIATPGRLKDHIANTAGFASKLMGGEDLGA*