AlfalfaGEDB | MsG0480021904.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021904.01

KEGG: K14857
GO: GO:0001510 GO:0005634 GO:0006364 GO:0008168 GO:0008649 GO:0031167 GO:0032259
PFAM: PF01728 PF07780 PF11861

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021904.01.T01	XP_003607491.2	94.118	867	25	2	4	844	2	868	0	1651

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021904.01.T01	O42832	36.545	851	437	32	1	797	1	802	1.56E-129	410

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021904.01.T01	A0A396IC17	94.118	867	25	2	4	844	2	868	0.0	1651

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0480021904.01	0.800692	1.279103e-48	5.994234e-46
MsG0080048135.01	MsG0480021904.01	0.812074	5.090727e-51	3.205056e-48
MsG0080048428.01	MsG0480021904.01	0.819816	9.519311e-53	7.403425e-50
MsG0080048785.01	MsG0480021904.01	0.813989	1.935389e-51	1.282876e-48
MsG0080048843.01	MsG0480021904.01	0.803012	4.270480e-49	2.122551e-46
MsG0080048856.01	MsG0480021904.01	0.818867	1.566312e-52	1.186460e-49
MsG0080048968.01	MsG0480021904.01	0.862532	4.742878e-64	1.393513e-60
MsG0180000055.01	MsG0480021904.01	0.819175	1.333399e-52	1.018585e-49
MsG0180000139.01	MsG0480021904.01	0.825370	4.864488e-54	4.425192e-51
MsG0180000142.01	MsG0480021904.01	0.813819	2.110628e-51	1.392633e-48

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PPI

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Gene1	Gene2	Type
MsG0280009716.01	MsG0480021904.01	PPI
MsG0480021288.01	MsG0480021904.01	PPI
MsG0480021904.01	MsG0880042050.01	PPI
MsG0480021904.01	MsG0180002023.01	PPI
MsG0480021904.01	MsG0180005851.01	PPI
MsG0480021904.01	MsG0180005851.01	PPI
MsG0480021904.01	MsG0180006082.01	PPI
MsG0480021904.01	MsG0180003409.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021904.01.T01	MTR_4g078640	94.002	867	26	2	4	844	2	868	0.0	1647
MsG0480021904.01.T01	MTR_4g070380	78.696	859	85	13	4	844	2	780	0.0	1268
MsG0480021904.01.T01	MTR_2g013490	30.417	240	129	6	1	212	1	230	1.48e-26	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021904.01.T01	AT4G25730	59.881	840	295	12	6	824	2	820	0.0	915
MsG0480021904.01.T01	AT5G01230	31.250	240	127	6	1	212	1	230	5.18e-28	115
MsG0480021904.01.T01	AT5G01230	46.774	62	28	1	1	62	1	57	2.02e-11	60.5

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Find 231 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGTTCCAAGGCAAA+GGG	0.578732	4:-65817223	MsG0480021904.01.T01:CDS
AAAAGTGGTATGGGTAAGGG+AGG	0.594301	4:-65817247	MsG0480021904.01.T01:CDS
AAAATACCTCTTCAGTTGTT+AGG	0.308107	4:+65821131	None:intergenic
AAACAATTAACCTTAGCTAT+CGG	0.534090	4:+65821706	None:intergenic
AAAGATCAAAGGAAATAAAA+CGG	0.531968	4:-65817875	MsG0480021904.01.T01:CDS
AAAGCAAAAGCAAAAGCAAA+AGG	0.462020	4:-65823239	MsG0480021904.01.T01:CDS
AAAGGGTGGCAAGGCACCAA+AGG	0.463780	4:-65817206	MsG0480021904.01.T01:CDS
AAAGGGTGGTAAGGCACCAA+AGG	0.574446	4:-65817188	MsG0480021904.01.T01:CDS
AAAGGTGTCCAAGTTAAGGC+TGG	0.572799	4:-65817316	MsG0480021904.01.T01:CDS
AAATCAATCAAATTTGGAAT+AGG	0.347043	4:+65816921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACCTCTTCAGTTGTT+AGG	+	Chr4:65818994-65819013	None:intergenic	30.0%
AAAGCAAAAGCAAAAGCAAA+AGG	-	Chr4:65816883-65816902	MsG0480021904.01.T01:three_prime_UTR	30.0%
AACCAGATATGATGAACAAA+TGG	-	Chr4:65821322-65821341	MsG0480021904.01.T01:intron	30.0%
AACTAATAAGCTACAAACCT+TGG	+	Chr4:65819506-65819525	None:intergenic	30.0%
AACTCAAGGATTAAAAGTTG+GGG	-	Chr4:65821102-65821121	MsG0480021904.01.T01:intron	30.0%
AAGCGCACAATATTTATTTG+GGG	-	Chr4:65820187-65820206	MsG0480021904.01.T01:intron	30.0%
ACTCTTCTTCACTTTGTTAA+AGG	-	Chr4:65820277-65820296	MsG0480021904.01.T01:CDS	30.0%
AGTGAGAATGATGAAAACAA+AGG	-	Chr4:65820920-65820939	MsG0480021904.01.T01:intron	30.0%
ATAAAAACGCTGTTCCAAAA+AGG	-	Chr4:65822756-65822775	MsG0480021904.01.T01:intron	30.0%
ATACACAATGAATTCCACAT+AGG	+	Chr4:65818203-65818222	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	65816817	65823327	65816817	ID=MsG0480021904.01;Name=MsG0480021904.01
Chr4	mRNA	65816817	65823327	65816817	ID=MsG0480021904.01.T01;Parent=MsG0480021904.01;Name=MsG0480021904.01.T01;_AED=0.29;_eAED=0.29;_QI=60\|0.88\|1\|1\|1\|1\|10\|279\|844
Chr4	exon	65816817	65818172	65816817	ID=MsG0480021904.01.T01:exon:20727;Parent=MsG0480021904.01.T01
Chr4	exon	65818690	65818816	65818690	ID=MsG0480021904.01.T01:exon:20726;Parent=MsG0480021904.01.T01
Chr4	exon	65819151	65819290	65819151	ID=MsG0480021904.01.T01:exon:20725;Parent=MsG0480021904.01.T01
Chr4	exon	65820263	65820349	65820263	ID=MsG0480021904.01.T01:exon:20724;Parent=MsG0480021904.01.T01
Chr4	exon	65820637	65820829	65820637	ID=MsG0480021904.01.T01:exon:20723;Parent=MsG0480021904.01.T01
Chr4	exon	65820967	65821028	65820967	ID=MsG0480021904.01.T01:exon:20722;Parent=MsG0480021904.01.T01
Chr4	exon	65821138	65821294	65821138	ID=MsG0480021904.01.T01:exon:20721;Parent=MsG0480021904.01.T01
Chr4	exon	65821580	65821626	65821580	ID=MsG0480021904.01.T01:exon:20720;Parent=MsG0480021904.01.T01
Chr4	exon	65821717	65821875	65821717	ID=MsG0480021904.01.T01:exon:20719;Parent=MsG0480021904.01.T01
Chr4	exon	65822782	65823327	65822782	ID=MsG0480021904.01.T01:exon:20718;Parent=MsG0480021904.01.T01
Chr4	five_prime_UTR	65823268	65823327	65823268	ID=MsG0480021904.01.T01:five_prime_utr;Parent=MsG0480021904.01.T01
Chr4	CDS	65822782	65823267	65822782	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65821717	65821875	65821717	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65821580	65821626	65821580	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65821138	65821294	65821138	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65820967	65821028	65820967	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65820637	65820829	65820637	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65820263	65820349	65820263	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65819151	65819290	65819151	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65818690	65818816	65818690	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	CDS	65817096	65818172	65817096	ID=MsG0480021904.01.T01:cds;Parent=MsG0480021904.01.T01
Chr4	three_prime_UTR	65816817	65817095	65816817	ID=MsG0480021904.01.T01:three_prime_utr;Parent=MsG0480021904.01.T01

Gene Sequence

>MsG0480021904.01.T01

ATGGGTAAAGCAAAAGCAAAAGCAAAAGGAAAACATCGTTTAGACAAATACTACTACTTAGCCAAAGAACACGGTTACCGTTCTCGTGCCTCATGGAAACTCGTTCAAATCAATTCCAAATTCCATTTCCTCGAATCCTCACGCTCCGTCCTCGATCTCTGCGCCGCTCCTGGCGGTTGGATGCAAGTCGCAGTTCAACGTGTTCCCGTCGATCATCTCGTTATCGGCGTCGATCTCGCTCCGATTAAACCAATTCGAGGCGCGATTGCTATTCAGGAAGATATTACTAGACCTGAATGTAAATCTAGAGTTAGGAAAATTATGAATGAAAATGGTTATCGTGCTTTTGATGTTATTCTTCATGATGGTTCTCCCAATGTTGGTGGTGCTTGGGCTCAAGAAGCTACTAGTCAGAATTCGCTTGTTATTGATGCTGTTAAGCTTGCTACTCAGTTTTTAGCTCCTAAGGGAACTTTTGTTACTAAGTTGTTTGAGAAGGTTGAGGTGGAAAAACCACCGGCTAGTCGTTCTGAATCTGCTGAGATATATATTTTGGGGATTAAGTATTTAGCCCCTGCTAAGATTGATCCTCGCATTCTCGATATCAAGCATCTTTTTGAGGCTTCTGCTCAACCGATAGCTAAGATGGTGGATGTACTTGGAAACAATAAGCAAAAGAGGCATCGTGACGGGTATGAAGATGGAAACACAACTTTGAGGAAGGTGTCTTCAGCTGCAAATTTTGTTTGGACAGATACTCCTCTGGAGATTCTTGGTTCAGTTACTTCCATAAGCTTTACTGATCCAGCTGATATACCAATCAAGGATCACGACCTAACAACTGAAGAGGTAAAATCTCTCTGTGAAGATTTGAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGCGGATTAACATTAGAAAAGCTCTATCACCTGCCAAAAAGACCGAACCTGCTACTACAGCTGAGGTGGAAAATGAGCATGATGTGGTGGATGAAGATGATAGAATACTCAACGAAATGGAGGAACTGACAAATGCAATGGACCGCAAGAAGAAGCGTGAAAAAAAGATTCTATCAAAAAGAAGAGCCAAGGACAAGGCGCGGAAAGCTACAGGGATGCAAGTGGATGCAGTAGAAGATTATGTTGACCATGAGTTGTTTTCCCTTGCTTCTATGAAGGGTAAGAAGGATCTGGTAGCTGTTGACACCACTGACTATGAAGGTGGCGAGGGTGAAGTGGATGACAGTGAGAATGATGAAAACAAAGGTGGCTCAGAGCATTCATCTAGTGACTTAGATTCTGACGAAGAACGTAAAAGATATGATGAACAAATGGAGGATTTACTTGAACAAGCTTATGAGCGGTTTGTGATAAAAAAGGAAGGCACTGCACAGCAGCGTAAGCGTATCAAGAAATCCTATGATGCAGACTCCCAACTTTTGGAGGCTGGTGAAGATGATGACATTATTCCGTCCAAATATGATTCAGATGAAGATCAGGATGTTCAAGAAGCAAATCCTTTGATGGTGCCACTTACAGATGGTACAGGGCCCACCCAAGAGGAGATCACAAATATGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGTAGAGGAAGGAGGCTTTGAGAAGGATGACAGCGAGAATGAAATGGATATTGATGGATTGAAGGAGAAGCCTCTTGTTGCTGAAAAGATCAAAGAAAATAAGCTAATTGCTGAAAAGATCAAAGGAAATAAAACGGCTACTTCTGTCGAGACAGATCGCAGTCAATCTAAAGCATCCAATGAAATGGATTTTGAGATTGTTCCTGCACCTGAAACTGATTCCGATGATTCGTCATCTGATGAGTCGGAGGATGATGTTGAAAAAAAAGCTGAGATACTAGCTTATGCTAAGAAGATGCTGAGGAAAAAGCAAAGGGAACAGATGCTAGATGATGCATATAATAAGTACATGTTTGATGACCAGGGATTGCCCAAGTGGTTTCTGGATGAGGAAAGAAAACACCGTGTACCAGTTAAGCCTGTCACGAAAGAGGATGTTGCTGCTATGAAAGCACAATTTAAAGCAATTGATACTAGACCTGCAAAGAAGGTGGCTGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAGATTGAGAAAGTCCGCAAGAAGGCCAATGCTATATCAGACCAGCCAGACATATCTGATCGTTCCAAGAATAAGCAAATTGACCGACTCTATAAAAACGCTGTTCCAAAAAGGCCTCAAAAGGAGTATGTAGTTGCGAAGAAAGGTGTCCAAGTTAAGGCTGGTAAGGGAAAAGTCCTTGTTGATCGCAGGATGAAGAGTGATGCGAGGAAAAGTGGTATGGGTAAGGGAGGCAAAAGAGGTTCCAAGGCAAAGGGTGGCAAGGCACCAAAGGGTGGTAAGGCACCAAAGGGTGGCAGGGCTCCGAGTGGCAAGGCTCCTATGGGTGGTGGCAAGGCACCAAAGGGTAGCAGGGGCCCAGGCGGCAAGAAGGGAAGGAAATAA

Protein sequence

>MsG0480021904.01.T01

MGKAKAKAKGKHRLDKYYYLAKEHGYRSRASWKLVQINSKFHFLESSRSVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIKPIRGAIAIQEDITRPECKSRVRKIMNENGYRAFDVILHDGSPNVGGAWAQEATSQNSLVIDAVKLATQFLAPKGTFVTKLFEKVEVEKPPASRSESAEIYILGIKYLAPAKIDPRILDIKHLFEASAQPIAKMVDVLGNNKQKRHRDGYEDGNTTLRKVSSAANFVWTDTPLEILGSVTSISFTDPADIPIKDHDLTTEEVKSLCEDLRVLGKQDFKHLLKWRINIRKALSPAKKTEPATTAEVENEHDVVDEDDRILNEMEELTNAMDRKKKREKKILSKRRAKDKARKATGMQVDAVEDYVDHELFSLASMKGKKDLVAVDTTDYEGGEGEVDDSENDENKGGSEHSSSDLDSDEERKRYDEQMEDLLEQAYERFVIKKEGTAQQRKRIKKSYDADSQLLEAGEDDDIIPSKYDSDEDQDVQEANPLMVPLTDGTGPTQEEITNMWFSQDVFAEAVEEGGFEKDDSENEMDIDGLKEKPLVAEKIKENKLIAEKIKGNKTATSVETDRSQSKASNEMDFEIVPAPETDSDDSSSDESEDDVEKKAEILAYAKKMLRKKQREQMLDDAYNKYMFDDQGLPKWFLDEERKHRVPVKPVTKEDVAAMKAQFKAIDTRPAKKVAEAKARKKRVAMRKIEKVRKKANAISDQPDISDRSKNKQIDRLYKNAVPKRPQKEYVVAKKGVQVKAGKGKVLVDRRMKSDARKSGMGKGGKRGSKAKGGKAPKGGKAPKGGRAPSGKAPMGGGKAPKGSRGPGGKKGRK*