AlfalfaGEDB | MsG0880043172.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043172.01

KEGG: -
GO: GO:0005515
PFAM: PF01344

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043172.01.T01	XP_013444839.1	67.016	191	18	2	1	146	1	191	1.79E-77	244

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043172.01.T01	Q9M2C9	55.102	98	42	2	45	141	86	182	3.11E-31	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043172.01.T01	A0A072TN21	67.016	191	18	2	1	146	1	191	8.57e-78	244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0880043172.01	0.815305	9.895085e-52	6.797241e-49
MsG0080047957.01	MsG0880043172.01	0.816290	5.968310e-52	4.212220e-49
MsG0080047959.01	MsG0880043172.01	0.828273	9.854796e-55	9.747922e-52
MsG0080048683.01	MsG0880043172.01	0.815837	7.532450e-52	5.250205e-49
MsG0080048830.01	MsG0880043172.01	0.805696	1.178439e-49	6.276431e-47
MsG0080048964.01	MsG0880043172.01	0.808763	2.639887e-50	1.522231e-47
MsG0080048982.01	MsG0880043172.01	0.803289	3.742394e-49	1.873397e-46
MsG0180000086.01	MsG0880043172.01	0.816991	4.157382e-52	2.990948e-49
MsG0180000235.01	MsG0880043172.01	0.817870	2.635052e-52	1.941834e-49
MsG0180000267.01	MsG0880043172.01	0.800272	1.557549e-48	7.221957e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043172.01.T01	MTR_8g030940	67.016	191	18	2	1	146	1	191	2.17e-81	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043172.01.T01	AT3G61350	55.102	98	42	2	45	141	86	182	3.17e-32	117
MsG0880043172.01.T01	AT3G61350	55.102	98	42	2	45	141	86	182	3.17e-32	117

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Find 84 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGGAAGGGCGATAC+CGG	0.429102	8:-20062290	MsG0880043172.01.T01:three_prime_UTR
AAATCCTGGAAGCTCATTCA+TGG	0.431377	8:-20064310	MsG0880043172.01.T01:CDS
AAATTCAAGTGATCCTCATT+TGG	0.298401	8:-20062732	MsG0880043172.01.T01:CDS
AACCCCATGAATGAGCTTCC+AGG	0.400374	8:+20064306	None:intergenic
AACTATTGAATCTTCAATTT+CGG	0.215275	8:+20062651	None:intergenic
AAGCATTATATTATTGGAAA+AGG	0.354815	8:-20062349	MsG0880043172.01.T01:three_prime_UTR
AATAAACTCTTCTTATTGGG+TGG	0.507650	8:-20064235	MsG0880043172.01.T01:CDS
AATAATACTCCACTGATTTG+TGG	0.437163	8:-20064550	MsG0880043172.01.T01:CDS
AATATGGGAAGGGCGATACC+GGG	0.551495	8:-20062289	MsG0880043172.01.T01:three_prime_UTR
AATCCTGGAAGCTCATTCAT+GGG	0.540754	8:-20064309	MsG0880043172.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGGGTAGTGAGAAT+AGG	-	Chr8:20062954-20062973	MsG0880043172.01.T01:intron	30.0%
AAATAAGGGTAGTGAGAATA+GGG	-	Chr8:20062955-20062974	MsG0880043172.01.T01:intron	30.0%
AAATTCAAGTGATCCTCATT+TGG	-	Chr8:20063978-20063997	MsG0880043172.01.T01:intron	30.0%
AATAAACTCTTCTTATTGGG+TGG	-	Chr8:20062475-20062494	MsG0880043172.01.T01:three_prime_UTR	30.0%
AATATGAAAGGAACAAATGG+AGG	+	Chr8:20063050-20063069	None:intergenic	30.0%
AATTCAAGTGATCCTCATTT+GGG	-	Chr8:20063979-20063998	MsG0880043172.01.T01:intron	30.0%
AATTGTGATAGAGAGAACAT+GGG	+	Chr8:20062782-20062801	None:intergenic	30.0%
ACATGCTTGTATATTTGACT+TGG	-	Chr8:20063386-20063405	MsG0880043172.01.T01:intron	30.0%
ACTATTTCGTATAGAAAACC+CGG	+	Chr8:20064442-20064461	None:intergenic	30.0%
ATTACTACTATCGAGGAATA+AGG	-	Chr8:20063475-20063494	MsG0880043172.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	20062100	20064632	20062100	ID=MsG0880043172.01;Name=MsG0880043172.01
Chr8	mRNA	20062100	20064632	20062100	ID=MsG0880043172.01.T01;Parent=MsG0880043172.01;Name=MsG0880043172.01.T01;_AED=0.10;_eAED=0.10;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|621\|150
Chr8	exon	20062100	20062814	20062100	ID=MsG0880043172.01.T01:exon:5336;Parent=MsG0880043172.01.T01
Chr8	exon	20064142	20064382	20064142	ID=MsG0880043172.01.T01:exon:5335;Parent=MsG0880043172.01.T01
Chr8	exon	20064515	20064632	20064515	ID=MsG0880043172.01.T01:exon:5334;Parent=MsG0880043172.01.T01
Chr8	CDS	20064515	20064632	20064515	ID=MsG0880043172.01.T01:cds;Parent=MsG0880043172.01.T01
Chr8	CDS	20064142	20064382	20064142	ID=MsG0880043172.01.T01:cds;Parent=MsG0880043172.01.T01
Chr8	CDS	20062721	20062814	20062721	ID=MsG0880043172.01.T01:cds;Parent=MsG0880043172.01.T01
Chr8	three_prime_UTR	20062100	20062720	20062100	ID=MsG0880043172.01.T01:three_prime_utr;Parent=MsG0880043172.01.T01

Gene Sequence

>MsG0880043172.01.T01

ATGGAGCATTTAGATGATGGTGAAGCATCAGAAAATAATGTTGATGAAGTAGAAGTCACTAATAATACTCCACTGATTTGTGGCCTTCCAGATGATATTTTCTTTGTGTCTGGCAAGAGGATAAATTGGATCATGTTTACTGTTATTTTGGATCCTACCTCATCAAGAAAATCCTGGAAGCTCATTCATGGGGTTCCGCCTCACGTAATGAAAAGGAAAGGAATGGGGTTTGAAGCTTTGGGAAATAAACTCTTCTTATTGGGTGGTTGTGGCTGGTCTGAAGATGCTACTGAAGAAGTTTATTCATACAATGCTTCTTTGAACTCGTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGCGAAGCAATGGACGAAAAACTATATGCTATTGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTTGGGATACTTTTGA

Protein sequence

>MsG0880043172.01.T01

MEHLDDGEASENNVDEVEVTNNTPLICGLPDDIFFVSGKRINWIMFTVILDPTSSRKSWKLIHGVPPHVMKRKGMGFEALGNKLFLLGGCGWSEDATEEVYSYNASLNSWVEAASLSTARCYFACEAMDEKLYAIGGIGSNSSDPHLGYF*