AlfalfaGEDB | MsG0180000235.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000235.01

KEGG: K03030
GO: GO:0005515
PFAM: PF01398

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000235.01.T01	XP_007160833.1	67.722	316	50	8	1	268	1	312	3.38E-127	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000235.01.T01	Q9LT08	64.537	313	58	8	4	268	1	308	4.97E-119	345

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000235.01.T01	V7CRL4	67.722	316	50	8	1	268	1	312	1.62e-127	374

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0180000235.01	0.849966	2.302810e-60	4.441677e-57
MsG0080047825.01	MsG0180000235.01	0.839062	1.984038e-57	2.708354e-54
MsG0080048058.01	MsG0180000235.01	0.849506	3.095023e-60	5.880017e-57
MsG0080048177.01	MsG0180000235.01	0.803950	2.728850e-49	1.389567e-46
MsG0080048178.01	MsG0180000235.01	0.810763	9.807580e-51	5.963469e-48
MsG0080048383.01	MsG0180000235.01	0.825786	3.877424e-54	3.569573e-51
MsG0080048461.01	MsG0180000235.01	0.838501	2.769249e-57	3.716221e-54
MsG0080048462.01	MsG0180000235.01	0.836137	1.116254e-56	1.394067e-53
MsG0080048830.01	MsG0180000235.01	0.821010	5.068170e-53	4.074903e-50
MsG0080048855.01	MsG0180000235.01	0.800724	1.260322e-48	5.910935e-46

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PPI

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Gene1	Gene2	Type
MsG0180000235.01	MsG0380017578.01	PPI
MsG0180000235.01	MsG0580024507.01	PPI
MsG0180000235.01	MsG0380017800.01	PPI
MsG0180000763.01	MsG0180000235.01	PPI
MsG0380015066.01	MsG0180000235.01	PPI
MsG0380015444.01	MsG0180000235.01	PPI
MsG0380017881.01	MsG0180000235.01	PPI
MsG0580024181.01	MsG0180000235.01	PPI
MsG0580025115.01	MsG0180000235.01	PPI
MsG0580025408.01	MsG0180000235.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000235.01.T01	MTR_2g017680	67.093	313	51	7	4	268	1	309	5.24e-129	368
MsG0180000235.01.T01	MTR_1g019930	68.354	316	49	7	1	268	1	313	8.76e-126	360

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000235.01.T01	AT5G23540	64.537	313	58	8	4	268	1	308	5.06e-120	345
MsG0180000235.01.T01	AT5G23540	60.305	262	53	6	55	268	1	259	1.16e-87	261

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Find 89 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGCAATTGCCAATGT+CGG	0.594399	1:+3234681	MsG0180000235.01.T01:CDS
AAACTTGCTCAGATGAATCT+AGG	0.385066	1:-3231376	None:intergenic
AACTTGCTCAGATGAATCTA+GGG	0.538949	1:-3231375	None:intergenic
AAGACACTCACTTGGATAGA+TGG	0.346214	1:-3233792	None:intergenic
AAGACTTCAAAGAATGTTTG+CGG	0.555255	1:+3231307	MsG0180000235.01.T01:CDS
AAGTCTTTCCATACCTGACA+TGG	0.533972	1:-3231291	None:intergenic
AAGTTATGGGTTTGATGTTG+GGG	0.521290	1:+3231569	MsG0180000235.01.T01:CDS
AATAATGTCGGTTCAAGCCA+TGG	0.535726	1:-3233906	None:intergenic
AATATTAATGGACATCATGA+AGG	0.547177	1:-3234831	None:intergenic
AATTAGAAACATGCTCCTCA+AGG	0.585638	1:-3234725	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTAGACTTTCTGTTTC+AGG	+	Chr1:3232742-3232761	MsG0180000235.01.T01:intron	30.0%
AACTAATGAACAAACTGTTC+AGG	+	Chr1:3234043-3234062	MsG0180000235.01.T01:intron	30.0%
AAGACTTCAAAGAATGTTTG+CGG	+	Chr1:3231307-3231326	MsG0180000235.01.T01:CDS	30.0%
ACATGTAGAGATTAATGAGT+TGG	-	Chr1:3233188-3233207	None:intergenic	30.0%
AGACATTATTCATGATAGAC+AGG	+	Chr1:3232538-3232557	MsG0180000235.01.T01:intron	30.0%
ATAAGGCAATTAGAGATAAG+TGG	+	Chr1:3232427-3232446	MsG0180000235.01.T01:intron	30.0%
ATACACGAAAATACAAAGAC+AGG	-	Chr1:3234402-3234421	None:intergenic	30.0%
ATATGTTGAAACAAACTGGA+AGG	+	Chr1:3231703-3231722	MsG0180000235.01.T01:intron	30.0%
ATCAAACATTGTTCAGACTT+TGG	+	Chr1:3234755-3234774	MsG0180000235.01.T01:CDS	30.0%
ATTAATCCAAACTATGATGC+TGG	+	Chr1:3233723-3233742	MsG0180000235.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	3231217	3235084	3231217	ID=MsG0180000235.01;Name=MsG0180000235.01
Chr1	mRNA	3231217	3235084	3231217	ID=MsG0180000235.01.T01;Parent=MsG0180000235.01;Name=MsG0180000235.01.T01;_AED=0.40;_eAED=0.41;_QI=76\|0.4\|0.5\|1\|1\|1\|6\|278\|268
Chr1	exon	3234616	3235084	3234616	ID=MsG0180000235.01.T01:exon:6207;Parent=MsG0180000235.01.T01
Chr1	exon	3233898	3234008	3233898	ID=MsG0180000235.01.T01:exon:6206;Parent=MsG0180000235.01.T01
Chr1	exon	3233630	3233807	3233630	ID=MsG0180000235.01.T01:exon:6205;Parent=MsG0180000235.01.T01
Chr1	exon	3232764	3232844	3232764	ID=MsG0180000235.01.T01:exon:6204;Parent=MsG0180000235.01.T01
Chr1	exon	3231548	3231648	3231548	ID=MsG0180000235.01.T01:exon:6203;Parent=MsG0180000235.01.T01
Chr1	exon	3231217	3231437	3231217	ID=MsG0180000235.01.T01:exon:6202;Parent=MsG0180000235.01.T01
Chr1	five_prime_UTR	3231217	3231292	3231217	ID=MsG0180000235.01.T01:five_prime_utr;Parent=MsG0180000235.01.T01
Chr1	CDS	3231293	3231437	3231293	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	CDS	3231548	3231648	3231548	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	CDS	3232764	3232844	3232764	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	CDS	3233630	3233807	3233630	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	CDS	3233898	3234008	3233898	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	CDS	3234616	3234806	3234616	ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1	three_prime_UTR	3234807	3235084	3234807	ID=MsG0180000235.01.T01:three_prime_utr;Parent=MsG0180000235.01.T01

Gene Sequence

>MsG0180000235.01.T01

ATGTCAGGTATGGAAAGACTTCAAAGAATGTTTGCGGGTGCAGGTGGAGCACTCGGCGGTCATCCACCACCGGATTCCCCCACCCTAGATTCATCTGAGCAAGTTTACATCTCTTCCCTTGCTCTTCTCAAAATGCTCAAACATGGTAGGGCTGGTGTACCTATGGAAGTTATGGGTTTGATGTTGGGGGAGTTTGTTGATGAGTATACTGTTAGGGTTGTTGATTTTTTGCTATGCCTCAGAGTGGCCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGCTGGCTTTCCGTGTGGACATTAACACACAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTCGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTCATTGATGCTTTCCGGCTGATTAATCCAAACTATGATGCTGGGTCAAGAACCGCGACAGACACCTCCAACTTGGGCCATCTGAACAAGCCATCTATCCAAGTGAGCTCTTATCCATGGCTTGAACCGACATTATTATCAATAGCAATCAATTACAGGAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGAGATGCTGAGTTTAGCAACCAAGTACAACAGGCAGTGCAGGAGGAAGACGAGCTGTCACCAGAAAAACTTGCAATTGCCAATGTCGGAAGGCAGGATGCTAAGAAGCACCTTGAGGAGCATGTTTCTAATTTAATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTGTTCTAG

Protein sequence

>MsG0180000235.01.T01

MSGMERLQRMFAGAGGALGGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDFLLCLRVARDGCRLVSFTSWIWLLAFRVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPNYDAGSRTATDTSNLGHLNKPSIQVSSYPWLEPTLLSIAINYRKNELEEKMLLNLHKKKWTDGDAEFSNQVQQAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*