AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000235.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000235.01.T01 MTR_2g017680 67.093 313 51 7 4 268 1 309 5.24e-129 368
MsG0180000235.01.T01 MTR_1g019930 68.354 316 49 7 1 268 1 313 8.76e-126 360
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000235.01.T01 AT5G23540 64.537 313 58 8 4 268 1 308 5.06e-120 345
MsG0180000235.01.T01 AT5G23540 60.305 262 53 6 55 268 1 259 1.16e-87 261

Find 89 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGTTAATGAAATATTAA+TGG 0.273453 1:-3234843 None:intergenic
CACATCCTGGATTTGGCTGC+TGG 0.286015 1:+3232793 MsG0180000235.01.T01:CDS
AGGTGGTCATTGATGCTTTC+CGG 0.296529 1:+3233697 MsG0180000235.01.T01:CDS
GTTTCAGAGTTAAATGCTTC+AGG 0.306879 1:+3234930 MsG0180000235.01.T01:three_prime_UTR
TATCAATAGCAATCAATTAC+AGG 0.311705 1:+3233928 MsG0180000235.01.T01:CDS
TATCATTCACATCCTGGATT+TGG 0.322391 1:+3232786 MsG0180000235.01.T01:CDS
TCAAACATTGTTCAGACTTT+GGG 0.328260 1:+3234756 MsG0180000235.01.T01:CDS
GAAGTTATGGGTTTGATGTT+GGG 0.328891 1:+3231568 MsG0180000235.01.T01:CDS
GATCCTATTCAGAGTGTTAA+AGG 0.332585 1:+3233672 MsG0180000235.01.T01:CDS
CCTGCACTGCCTGTTGTACT+TGG 0.336661 1:-3234635 None:intergenic
TGGTGTACCTATGGAAGTTA+TGG 0.339817 1:+3231555 MsG0180000235.01.T01:CDS
ATCAAACATTGTTCAGACTT+TGG 0.343443 1:+3234755 MsG0180000235.01.T01:CDS
GGAAGTTATGGGTTTGATGT+TGG 0.345452 1:+3231567 MsG0180000235.01.T01:CDS
AAGACACTCACTTGGATAGA+TGG 0.346214 1:-3233792 None:intergenic
CTTGACCCAGCATCATAGTT+TGG 0.351183 1:-3233729 None:intergenic
CACAGTTGTGTTCTAGAGTT+AGG 0.354739 1:+3234791 MsG0180000235.01.T01:exon
CGCGACAGACACCTCCAACT+TGG 0.380697 1:+3233755 MsG0180000235.01.T01:CDS
TTGCCTTTAACACTCTGAAT+AGG 0.383773 1:-3233675 None:intergenic
AAACTTGCTCAGATGAATCT+AGG 0.385066 1:-3231376 None:intergenic
GGTGTACCTATGGAAGTTAT+GGG 0.391133 1:+3231556 MsG0180000235.01.T01:CDS
TTGTTGATGAGTATACTGTT+AGG 0.408950 1:+3231596 MsG0180000235.01.T01:CDS
TTAACCTTCATAAGAAGAAA+TGG 0.410261 1:+3233979 MsG0180000235.01.T01:CDS
CATATCCTAAAAGTTCTTGA+AGG 0.424395 1:-3235057 None:intergenic
CAGTCCATTTCTTCTTATGA+AGG 0.428123 1:-3233983 None:intergenic
CAAAGAATGTTTGCGGGTGC+AGG 0.429014 1:+3231314 MsG0180000235.01.T01:CDS
GCGACAGACACCTCCAACTT+GGG 0.432186 1:+3233756 MsG0180000235.01.T01:CDS
ATTAATCCAAACTATGATGC+TGG 0.441553 1:+3233723 MsG0180000235.01.T01:CDS
TTCAGGCCAGAGATGGTTGT+AGG 0.442433 1:+3232759 MsG0180000235.01.T01:intron
TTGGTGAATTTAGGTAGGGC+TGG 0.447981 1:+3231535 MsG0180000235.01.T01:intron
CTTTGTTAACAAGTTAAGAA+TGG 0.451674 1:-3231231 None:intergenic
AGACTTCAAAGAATGTTTGC+GGG 0.454988 1:+3231308 MsG0180000235.01.T01:CDS
GTTCAGATGGCCCAAGTTGG+AGG 0.456336 1:-3233766 None:intergenic
TTAACTTGTTAACAAAGAAA+AGG 0.458570 1:+3231237 MsG0180000235.01.T01:five_prime_UTR
GGATAGATGGCTTGTTCAGA+TGG 0.463953 1:-3233779 None:intergenic
GGCTTTAAATCAACGGGCAG+TGG 0.464164 1:+3233638 MsG0180000235.01.T01:CDS
AGCATCCTGCCTTCCGACAT+TGG 0.486252 1:-3234694 None:intergenic
CCAAGTACAACAGGCAGTGC+AGG 0.488727 1:+3234635 MsG0180000235.01.T01:CDS
GGTTGGTATCATTCACATCC+TGG 0.489485 1:+3232780 MsG0180000235.01.T01:CDS
CATAGTTTGGATTAATCAGC+CGG 0.490084 1:-3233716 None:intergenic
GTTTAGCAACCAAGTACAAC+AGG 0.493606 1:+3234626 MsG0180000235.01.T01:CDS
TGTTGATGAGTATACTGTTA+GGG 0.494455 1:+3231597 MsG0180000235.01.T01:CDS
GTCGATAACACACCCATGTC+AGG 0.501714 1:+3231278 MsG0180000235.01.T01:exon
GAAAGCCAGCAGCCAAATCC+AGG 0.501726 1:-3232798 None:intergenic
TGCTCAGATGAATCTAGGGT+GGG 0.502945 1:-3231371 None:intergenic
AGGTAGGGCTGGTGTACCTA+TGG 0.507375 1:+3231546 MsG0180000235.01.T01:intron
GCGGGTGCAGGTGGAGCACT+CGG 0.510885 1:+3231326 MsG0180000235.01.T01:CDS
TACCAACCTACAACCATCTC+TGG 0.511025 1:-3232765 None:intergenic
TAACACACCCATGTCAGGTA+TGG 0.517767 1:+3231283 MsG0180000235.01.T01:exon
TGTGGACATTAACACACAAC+AGG 0.519212 1:+3232823 MsG0180000235.01.T01:CDS
ATTGCTATTGATAATAATGT+CGG 0.520887 1:-3233918 None:intergenic
AAGTTATGGGTTTGATGTTG+GGG 0.521290 1:+3231569 MsG0180000235.01.T01:CDS
AATTGCCAATGTCGGAAGGC+AGG 0.531358 1:+3234689 MsG0180000235.01.T01:CDS
AGAATGTTTGCGGGTGCAGG+TGG 0.533259 1:+3231317 MsG0180000235.01.T01:CDS
GTGTCAGTAATGGTAATGTA+AGG 0.533502 1:-3235035 None:intergenic
AAGTCTTTCCATACCTGACA+TGG 0.533972 1:-3231291 None:intergenic
AATAATGTCGGTTCAAGCCA+TGG 0.535726 1:-3233906 None:intergenic
GCTCAGATGAATCTAGGGTG+GGG 0.536007 1:-3231370 None:intergenic
AACTTGCTCAGATGAATCTA+GGG 0.538949 1:-3231375 None:intergenic
AATATTAATGGACATCATGA+AGG 0.547177 1:-3234831 None:intergenic
AAGACTTCAAAGAATGTTTG+CGG 0.555255 1:+3231307 MsG0180000235.01.T01:CDS
CTTGTTCAGATGGCCCAAGT+TGG 0.556282 1:-3233769 None:intergenic
TTTCTGTTTCAGGCCAGAGA+TGG 0.557983 1:+3232752 MsG0180000235.01.T01:intron
GGCCAGAGATGGTTGTAGGT+TGG 0.558155 1:+3232763 MsG0180000235.01.T01:intron
CTCAGATGAATCTAGGGTGG+GGG 0.560533 1:-3231369 None:intergenic
CATAAGAAGAAATGGACTGA+TGG 0.560914 1:+3233987 MsG0180000235.01.T01:CDS
GTTCTTGAAGGTGTCAGTAA+TGG 0.564288 1:-3235045 None:intergenic
TTAATCCAAACTATGATGCT+GGG 0.579205 1:+3233724 MsG0180000235.01.T01:CDS
TCAACGGGCAGTGGCTGTCG+TGG 0.579907 1:+3233647 MsG0180000235.01.T01:CDS
TAATGGTAATGTAAGGTCGA+TGG 0.580603 1:-3235028 None:intergenic
AGTTATGGGTTTGATGTTGG+GGG 0.584691 1:+3231570 MsG0180000235.01.T01:CDS
AATTAGAAACATGCTCCTCA+AGG 0.585638 1:-3234725 None:intergenic
CAAGTTGGAGGTGTCTGTCG+CGG 0.590950 1:-3233754 None:intergenic
ACGGGCAGTGGCTGTCGTGG+TGG 0.593252 1:+3233650 MsG0180000235.01.T01:CDS
AAACTTGCAATTGCCAATGT+CGG 0.594399 1:+3234681 MsG0180000235.01.T01:CDS
TTGGCTGCTGGCTTTCCGTG+TGG 0.599340 1:+3232805 MsG0180000235.01.T01:CDS
CTTCTCAAAATGCTCAAACA+TGG 0.601308 1:+3231416 MsG0180000235.01.T01:CDS
TTGCAATTGCCAATGTCGGA+AGG 0.605525 1:+3234685 MsG0180000235.01.T01:CDS
TTGCTCAGATGAATCTAGGG+TGG 0.606378 1:-3231372 None:intergenic
TATTCAGAGTGTTAAAGGCA+AGG 0.607906 1:+3233677 MsG0180000235.01.T01:CDS
ATCAAACCCATAACTTCCAT+AGG 0.614276 1:-3231562 None:intergenic
AGTACAACAGGCAGTGCAGG+AGG 0.615446 1:+3234638 MsG0180000235.01.T01:CDS
ACTCGGCGGTCATCCACCAC+CGG 0.646687 1:+3231343 MsG0180000235.01.T01:CDS
AGTCTTTCCATACCTGACAT+GGG 0.654630 1:-3231290 None:intergenic
GGATGCTAAGAAGCACCTTG+AGG 0.677016 1:+3234710 MsG0180000235.01.T01:CDS
CATCATGAAGGAAAATACAG+TGG 0.680591 1:-3234819 None:intergenic
GGTGCAGGTGGAGCACTCGG+CGG 0.713068 1:+3231329 MsG0180000235.01.T01:CDS
CTAACACCAGTACCACTCTG+AGG 0.717528 1:-3231639 None:intergenic
TCAGAGTGTTAAAGGCAAGG+TGG 0.720728 1:+3233680 MsG0180000235.01.T01:CDS
GTTGTGTGTTAATGTCCACA+CGG 0.749093 1:-3232820 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTATTTTTATTAA+AGG + Chr1:3231730-3231749 MsG0180000235.01.T01:intron 0.0%
!!! TTATTTATTTTTTCTTTATC+TGG + Chr1:3234164-3234183 MsG0180000235.01.T01:intron 10.0%
!! AAAAAAAAATGTTAACAAAC+AGG - Chr1:3234873-3234892 None:intergenic 15.0%
!! AAAAATCCCAATAAAAAATT+AGG - Chr1:3231515-3231534 None:intergenic 15.0%
!! AAAATCCCAATAAAAAATTA+GGG - Chr1:3231514-3231533 None:intergenic 15.0%
!! AAATTAGGGATTAAAAAATT+TGG - Chr1:3231500-3231519 None:intergenic 15.0%
!! AATTAGGGATTAAAAAATTT+GGG - Chr1:3231499-3231518 None:intergenic 15.0%
!! ATGATATTTATGAAATTTCT+GGG + Chr1:3232936-3232955 MsG0180000235.01.T01:intron 15.0%
!! TATGATATCATATAACAATA+CGG - Chr1:3233152-3233171 None:intergenic 15.0%
!!! ACATTTATAAAGCTTTTATA+AGG + Chr1:3232410-3232429 MsG0180000235.01.T01:intron 15.0%
!!! AGTATTTTTATTGCTAAATT+TGG + Chr1:3232980-3232999 MsG0180000235.01.T01:intron 15.0%
!!! ATTTTTTATTGGGATTTTTT+TGG + Chr1:3231516-3231535 MsG0180000235.01.T01:intron 15.0%
!!! TATCATCTTTTTATTTTACT+TGG - Chr1:3232922-3232941 None:intergenic 15.0%
!!! TTAATCCCTAATTTTTTATT+GGG + Chr1:3231506-3231525 MsG0180000235.01.T01:intron 15.0%
!!! TTTAATCCCTAATTTTTTAT+TGG + Chr1:3231505-3231524 MsG0180000235.01.T01:intron 15.0%
!!! TTTCACAAAGATTATTTTAT+CGG + Chr1:3234352-3234371 MsG0180000235.01.T01:intron 15.0%
!! AGAAAAGTAAATTTATTTCC+TGG + Chr1:3233009-3233028 MsG0180000235.01.T01:intron 20.0%
!! ATACCATAAGTAAAATGATA+GGG + Chr1:3232118-3232137 MsG0180000235.01.T01:intron 20.0%
!! CAATAATGTGAATGTTATAA+TGG + Chr1:3232261-3232280 MsG0180000235.01.T01:intron 20.0%
!! GAGTGTTAATGAAATATTAA+TGG - Chr1:3234846-3234865 None:intergenic 20.0%
!! GATGATATTTATGAAATTTC+TGG + Chr1:3232935-3232954 MsG0180000235.01.T01:intron 20.0%
!! TAAAACGAATTTATGAAACT+TGG + Chr1:3232086-3232105 MsG0180000235.01.T01:intron 20.0%
!! TAAATTTAATTGTTGCTCAT+AGG - Chr1:3234298-3234317 None:intergenic 20.0%
!! TATAAAAGTTTAGATGAGTT+TGG + Chr1:3231932-3231951 MsG0180000235.01.T01:intron 20.0%
!! TGATATTTATGAAATTTCTG+GGG + Chr1:3232937-3232956 MsG0180000235.01.T01:intron 20.0%
!!! ATCTTTTTATTTTACTTGGT+TGG - Chr1:3232918-3232937 None:intergenic 20.0%
!!! ATTGCTATTGATAATAATGT+CGG - Chr1:3233921-3233940 None:intergenic 20.0%
!!! GAATTTTGCATTTCTTAAAT+GGG + Chr1:3231777-3231796 MsG0180000235.01.T01:intron 20.0%
!!! TGAATTTTGCATTTCTTAAA+TGG + Chr1:3231776-3231795 MsG0180000235.01.T01:intron 20.0%
!!! TTAACTTGTTAACAAAGAAA+AGG + Chr1:3231237-3231256 MsG0180000235.01.T01:five_prime_UTR 20.0%
! ACACAAAACAATATAGAACT+AGG + Chr1:3232294-3232313 MsG0180000235.01.T01:intron 25.0%
! ATTGAAACTAACTGTAAACT+AGG + Chr1:3233486-3233505 MsG0180000235.01.T01:intron 25.0%
! CATACCATAAGTAAAATGAT+AGG + Chr1:3232117-3232136 MsG0180000235.01.T01:intron 25.0%
! CATATTTCATTTAGTTAGAC+AGG + Chr1:3232048-3232067 MsG0180000235.01.T01:intron 25.0%
! CTTTGTTAACAAGTTAAGAA+TGG - Chr1:3231234-3231253 None:intergenic 25.0%
! GATTCTACTAATTTAAGTCA+AGG - Chr1:3234520-3234539 None:intergenic 25.0%
! TATCAATAGCAATCAATTAC+AGG + Chr1:3233928-3233947 MsG0180000235.01.T01:CDS 25.0%
! TATCGACAATTGATGAAAAA+TGG - Chr1:3231265-3231284 None:intergenic 25.0%
! TTAACCTTCATAAGAAGAAA+TGG + Chr1:3233979-3233998 MsG0180000235.01.T01:CDS 25.0%
! TTGAAACTAACTGTAAACTA+GGG + Chr1:3233487-3233506 MsG0180000235.01.T01:intron 25.0%
! TTGAATCAAAATCCTCTTAA+TGG - Chr1:3232506-3232525 None:intergenic 25.0%
!! AATATTAATGGACATCATGA+AGG - Chr1:3234834-3234853 None:intergenic 25.0%
!! GATATTTATGAAATTTCTGG+GGG + Chr1:3232938-3232957 MsG0180000235.01.T01:intron 25.0%
!! TAATGAGTTGGATCAAAATA+TGG - Chr1:3233176-3233195 None:intergenic 25.0%
!!! AAATTTTAAAGACACTCACT+TGG - Chr1:3233803-3233822 None:intergenic 25.0%
!!! TTTTTTGGTGAATTTAGGTA+GGG + Chr1:3231531-3231550 MsG0180000235.01.T01:intron 25.0%
!!! TTTTTTTGGTGAATTTAGGT+AGG + Chr1:3231530-3231549 MsG0180000235.01.T01:intron 25.0%
AAACTTAGACTTTCTGTTTC+AGG + Chr1:3232742-3232761 MsG0180000235.01.T01:intron 30.0%
AACTAATGAACAAACTGTTC+AGG + Chr1:3234043-3234062 MsG0180000235.01.T01:intron 30.0%
AAGACTTCAAAGAATGTTTG+CGG + Chr1:3231307-3231326 MsG0180000235.01.T01:CDS 30.0%
ACATGTAGAGATTAATGAGT+TGG - Chr1:3233188-3233207 None:intergenic 30.0%
AGACATTATTCATGATAGAC+AGG + Chr1:3232538-3232557 MsG0180000235.01.T01:intron 30.0%
ATAAGGCAATTAGAGATAAG+TGG + Chr1:3232427-3232446 MsG0180000235.01.T01:intron 30.0%
ATACACGAAAATACAAAGAC+AGG - Chr1:3234402-3234421 None:intergenic 30.0%
ATATGTTGAAACAAACTGGA+AGG + Chr1:3231703-3231722 MsG0180000235.01.T01:intron 30.0%
ATCAAACATTGTTCAGACTT+TGG + Chr1:3234755-3234774 MsG0180000235.01.T01:CDS 30.0%
ATTAATCCAAACTATGATGC+TGG + Chr1:3233723-3233742 MsG0180000235.01.T01:CDS 30.0%
ATTGCATTGGATAGAAAAGT+TGG + Chr1:3232320-3232339 MsG0180000235.01.T01:intron 30.0%
ATTTAATTGTTGCTCATAGG+TGG - Chr1:3234295-3234314 None:intergenic 30.0%
CAGGATATTATCATGTCATT+TGG + Chr1:3232557-3232576 MsG0180000235.01.T01:intron 30.0%
CATATCCTAAAAGTTCTTGA+AGG - Chr1:3235060-3235079 None:intergenic 30.0%
CGTATGAGAAATTGAATGAA+GGG - Chr1:3231476-3231495 None:intergenic 30.0%
CTCTACATGTGTATAAGAAT+TGG + Chr1:3233198-3233217 MsG0180000235.01.T01:intron 30.0%
CTTGATATGTTGAAACAAAC+TGG + Chr1:3231699-3231718 MsG0180000235.01.T01:intron 30.0%
GTTTCAATTACAAATTCTCC+AGG - Chr1:3233474-3233493 None:intergenic 30.0%
TAAGGCAATTAGAGATAAGT+GGG + Chr1:3232428-3232447 MsG0180000235.01.T01:intron 30.0%
TAATGGTTTATTCTCGAGAA+TGG + Chr1:3234453-3234472 MsG0180000235.01.T01:intron 30.0%
TACACGAAAATACAAAGACA+GGG - Chr1:3234401-3234420 None:intergenic 30.0%
TCAAAATCCTCTTAATGGTT+TGG - Chr1:3232501-3232520 None:intergenic 30.0%
TCAAACATTGTTCAGACTTT+GGG + Chr1:3234756-3234775 MsG0180000235.01.T01:CDS 30.0%
TCAGGTATGTTAAGATTCTT+GGG + Chr1:3234061-3234080 MsG0180000235.01.T01:intron 30.0%
TGAATGTTATAATGGTTGTG+TGG + Chr1:3232269-3232288 MsG0180000235.01.T01:intron 30.0%
TTAATCCAAACTATGATGCT+GGG + Chr1:3233724-3233743 MsG0180000235.01.T01:CDS 30.0%
TTCAGGTATGTTAAGATTCT+TGG + Chr1:3234060-3234079 MsG0180000235.01.T01:intron 30.0%
TTGCATTGGATAGAAAAGTT+GGG + Chr1:3232321-3232340 MsG0180000235.01.T01:intron 30.0%
TTGCTTAAATCCTATGGTTA+TGG - Chr1:3232159-3232178 None:intergenic 30.0%
! AATCTTGCTTTAGGTGATTT+GGG + Chr1:3232375-3232394 MsG0180000235.01.T01:intron 30.0%
! ATTTTCGTGTATGATGTTGT+GGG + Chr1:3234410-3234429 MsG0180000235.01.T01:intron 30.0%
! CTTCCCTATCATTTTACTTA+TGG - Chr1:3232124-3232143 None:intergenic 30.0%
! TATATAGATTATGAAGTGCC+TGG + Chr1:3233453-3233472 MsG0180000235.01.T01:intron 30.0%
! TATTTTCGTGTATGATGTTG+TGG + Chr1:3234409-3234428 MsG0180000235.01.T01:intron 30.0%
! TGACTTCAAATTCTCCTTTT+AGG + Chr1:3233876-3233895 MsG0180000235.01.T01:intron 30.0%
! TGTTGATGAGTATACTGTTA+GGG + Chr1:3231597-3231616 MsG0180000235.01.T01:CDS 30.0%
! TTATCTATTGCAGAGTTTTG+AGG + Chr1:3233617-3233636 MsG0180000235.01.T01:intron 30.0%
! TTGTTGATGAGTATACTGTT+AGG + Chr1:3231596-3231615 MsG0180000235.01.T01:CDS 30.0%
!!! GGGATTTTTTTGGTGAATTT+AGG + Chr1:3231526-3231545 MsG0180000235.01.T01:intron 30.0%
!!! GTTTTGAGGCTTTAAATCAA+CGG + Chr1:3233631-3233650 MsG0180000235.01.T01:CDS 30.0%
!!! TTTTGAGGCTTTAAATCAAC+GGG + Chr1:3233632-3233651 MsG0180000235.01.T01:CDS 30.0%
AAACTTGCAATTGCCAATGT+CGG + Chr1:3234681-3234700 MsG0180000235.01.T01:CDS 35.0%
AACATCCCAATCTAAGAATG+TGG - Chr1:3233298-3233317 None:intergenic 35.0%
AAGTTATGGGTTTGATGTTG+GGG + Chr1:3231569-3231588 MsG0180000235.01.T01:CDS 35.0%
AATTAGAAACATGCTCCTCA+AGG - Chr1:3234728-3234747 None:intergenic 35.0%
ACATCCCAATCTAAGAATGT+GGG - Chr1:3233297-3233316 None:intergenic 35.0%
ACGTCCAAATTAGAGATAGA+GGG + Chr1:3232455-3232474 MsG0180000235.01.T01:intron 35.0%
AGAACACTAAAGCATAATCC+AGG - Chr1:3233030-3233049 None:intergenic 35.0%
AGACTTCAAAGAATGTTTGC+GGG + Chr1:3231308-3231327 MsG0180000235.01.T01:CDS 35.0%
AGAGATGTAACCATAACCAT+AGG + Chr1:3232146-3232165 MsG0180000235.01.T01:intron 35.0%
AGCAATCTATCATCAACTAC+AGG - Chr1:3234484-3234503 None:intergenic 35.0%
AGTTTAGATGAGTTGTGTCT+CGG + Chr1:3231832-3231851 MsG0180000235.01.T01:intron 35.0%
AGTTTAGATGAGTTTGGTCT+CGG + Chr1:3231938-3231957 MsG0180000235.01.T01:intron 35.0%
ATCAAACCCATAACTTCCAT+AGG - Chr1:3231565-3231584 None:intergenic 35.0%
ATTACCCCACATTCTTAGAT+TGG + Chr1:3233289-3233308 MsG0180000235.01.T01:intron 35.0%
CAGTCCATTTCTTCTTATGA+AGG - Chr1:3233986-3234005 None:intergenic 35.0%
CATAAGCTTCATCATGTTGT+AGG + Chr1:3234223-3234242 MsG0180000235.01.T01:intron 35.0%
CATAGTTTGGATTAATCAGC+CGG - Chr1:3233719-3233738 None:intergenic 35.0%
CATCATGAAGGAAAATACAG+TGG - Chr1:3234822-3234841 None:intergenic 35.0%
CTTCTCAAAATGCTCAAACA+TGG + Chr1:3231416-3231435 MsG0180000235.01.T01:CDS 35.0%
GAAGTTATGGGTTTGATGTT+GGG + Chr1:3231568-3231587 MsG0180000235.01.T01:CDS 35.0%
GCGTATGAGAAATTGAATGA+AGG - Chr1:3231477-3231496 None:intergenic 35.0%
GTAGACTAGAATCTTGCTTT+AGG + Chr1:3232366-3232385 MsG0180000235.01.T01:intron 35.0%
GTTTCAGAGTTAAATGCTTC+AGG + Chr1:3234930-3234949 MsG0180000235.01.T01:three_prime_UTR 35.0%
TACCACATCTTCATAAGAGA+TGG - Chr1:3232349-3232368 None:intergenic 35.0%
TACCATCTCTTATGAAGATG+TGG + Chr1:3232344-3232363 MsG0180000235.01.T01:intron 35.0%
TAGAACTAGGATGATTGCAT+TGG + Chr1:3232307-3232326 MsG0180000235.01.T01:intron 35.0%
TATCATTCACATCCTGGATT+TGG + Chr1:3232786-3232805 MsG0180000235.01.T01:CDS 35.0%
TCAAGTCCAGACATTATTCA+TGG - Chr1:3232701-3232720 None:intergenic 35.0%
TTACCCCACATTCTTAGATT+GGG + Chr1:3233290-3233309 MsG0180000235.01.T01:intron 35.0%
TTCTCTCCATGAATAATGTC+TGG + Chr1:3232692-3232711 MsG0180000235.01.T01:intron 35.0%
TTCTTGTAGCCAACTTTACT+TGG + Chr1:3232580-3232599 MsG0180000235.01.T01:intron 35.0%
TTGCCTTTAACACTCTGAAT+AGG - Chr1:3233678-3233697 None:intergenic 35.0%
! AAACTTGCTCAGATGAATCT+AGG - Chr1:3231379-3231398 None:intergenic 35.0%
! AACTTGCTCAGATGAATCTA+GGG - Chr1:3231378-3231397 None:intergenic 35.0%
! CACAACTTGCTTAAATCCTA+TGG - Chr1:3232165-3232184 None:intergenic 35.0%
! GAATCTTGCTTTAGGTGATT+TGG + Chr1:3232374-3232393 MsG0180000235.01.T01:intron 35.0%
! GATCCTATTCAGAGTGTTAA+AGG + Chr1:3233672-3233691 MsG0180000235.01.T01:CDS 35.0%
! GTGTCAGTAATGGTAATGTA+AGG - Chr1:3235038-3235057 None:intergenic 35.0%
! TAATGGTAATGTAAGGTCGA+TGG - Chr1:3235031-3235050 None:intergenic 35.0%
! TATTCAGAGTGTTAAAGGCA+AGG + Chr1:3233677-3233696 MsG0180000235.01.T01:CDS 35.0%
! TCATGATTTTTGCGCAATTC+AGG + Chr1:3234594-3234613 MsG0180000235.01.T01:intron 35.0%
! TGACACCTTCAAGAACTTTT+AGG + Chr1:3235052-3235071 MsG0180000235.01.T01:three_prime_UTR 35.0%
! TTGGCAATTGCAAGTTTTTC+TGG - Chr1:3234678-3234697 None:intergenic 35.0%
!! CATAAGAAGAAATGGACTGA+TGG + Chr1:3233987-3234006 MsG0180000235.01.T01:CDS 35.0%
AAACCTTATCCCACTAAGTG+GGG + Chr1:3233104-3233123 MsG0180000235.01.T01:intron 40.0%
AACGCGCTATGTCAATATCT+AGG - Chr1:3234260-3234279 None:intergenic 40.0%
AAGACACTCACTTGGATAGA+TGG - Chr1:3233795-3233814 None:intergenic 40.0%
AAGTCTTTCCATACCTGACA+TGG - Chr1:3231294-3231313 None:intergenic 40.0%
AGTCTTTCCATACCTGACAT+GGG - Chr1:3231293-3231312 None:intergenic 40.0%
AGTTATGGGTTTGATGTTGG+GGG + Chr1:3231570-3231589 MsG0180000235.01.T01:CDS 40.0%
ATAACAGCACTATCCACACA+AGG - Chr1:3233565-3233584 None:intergenic 40.0%
ATTGGTGCAAGCACTTGAAT+AGG + Chr1:3233216-3233235 MsG0180000235.01.T01:intron 40.0%
CAAACCTTATCCCACTAAGT+GGG + Chr1:3233103-3233122 MsG0180000235.01.T01:intron 40.0%
CACACACTCACTGTAATCAA+AGG + Chr1:3234553-3234572 MsG0180000235.01.T01:intron 40.0%
CATCCCAATCTAAGAATGTG+GGG - Chr1:3233296-3233315 None:intergenic 40.0%
CCAAATTAGAGATAGAGGGA+GGG + Chr1:3232459-3232478 MsG0180000235.01.T01:intron 40.0%
CTATAGGCCAAACCATTAAG+AGG + Chr1:3232491-3232510 MsG0180000235.01.T01:intron 40.0%
GACGTCCAAATTAGAGATAG+AGG + Chr1:3232454-3232473 MsG0180000235.01.T01:intron 40.0%
GCGGAAAAGAGTTGAAACTT+TGG + Chr1:3232602-3232621 MsG0180000235.01.T01:intron 40.0%
GGAAGTTATGGGTTTGATGT+TGG + Chr1:3231567-3231586 MsG0180000235.01.T01:CDS 40.0%
GGGTGTGAAATAGAATACAG+CGG + Chr1:3234081-3234100 MsG0180000235.01.T01:intron 40.0%
GGTGTACCTATGGAAGTTAT+GGG + Chr1:3231556-3231575 MsG0180000235.01.T01:CDS 40.0%
GTTGTGTGTTAATGTCCACA+CGG - Chr1:3232823-3232842 None:intergenic 40.0%
GTTTAGCAACCAAGTACAAC+AGG + Chr1:3234626-3234645 MsG0180000235.01.T01:CDS 40.0%
TAGCTGGTGGTATAAACTTG+TGG + Chr1:3233337-3233356 MsG0180000235.01.T01:intron 40.0%
TCAAACCTTATCCCACTAAG+TGG + Chr1:3233102-3233121 MsG0180000235.01.T01:intron 40.0%
TCCAAATTAGAGATAGAGGG+AGG + Chr1:3232458-3232477 MsG0180000235.01.T01:intron 40.0%
TGGTGTACCTATGGAAGTTA+TGG + Chr1:3231555-3231574 MsG0180000235.01.T01:CDS 40.0%
TGTGGACATTAACACACAAC+AGG + Chr1:3232823-3232842 MsG0180000235.01.T01:CDS 40.0%
TTGGAGGTTCAATGCTACAA+CGG - Chr1:3233256-3233275 None:intergenic 40.0%
TTGTAGCCAACTTTACTTGG+CGG + Chr1:3232583-3232602 MsG0180000235.01.T01:intron 40.0%
! AATATGATGATGAGCCTTGG+AGG - Chr1:3233272-3233291 None:intergenic 40.0%
! GGTAATATGATGATGAGCCT+TGG - Chr1:3233275-3233294 None:intergenic 40.0%
! TCCTTTTAGGCTCTTATCCA+TGG + Chr1:3233889-3233908 MsG0180000235.01.T01:intron 40.0%
! TCTTTTCCGCCAAGTAAAGT+TGG - Chr1:3232592-3232611 None:intergenic 40.0%
! TGTGAACGATTTTGCTCACT+TGG + Chr1:3234320-3234339 MsG0180000235.01.T01:intron 40.0%
!! AATAATGTCGGTTCAAGCCA+TGG - Chr1:3233909-3233928 None:intergenic 40.0%
!! CACAGTTGTGTTCTAGAGTT+AGG + Chr1:3234791-3234810 MsG0180000235.01.T01:exon 40.0%
!! GAGCATTTTGAGAAGAGCAA+GGG - Chr1:3231411-3231430 None:intergenic 40.0%
!! GTTCTTGAAGGTGTCAGTAA+TGG - Chr1:3235048-3235067 None:intergenic 40.0%
!! TGAGCATTTTGAGAAGAGCA+AGG - Chr1:3231412-3231431 None:intergenic 40.0%
!!! TTTTTTGCTATGCCTCAGAG+TGG + Chr1:3231627-3231646 MsG0180000235.01.T01:CDS 40.0%
AAACCATTAAGCAACCCCTC+AGG - Chr1:3234442-3234461 None:intergenic 45.0%
AATTAGAGATAGAGGGAGGG+AGG + Chr1:3232462-3232481 MsG0180000235.01.T01:intron 45.0%
AGGTGGTCATTGATGCTTTC+CGG + Chr1:3233697-3233716 MsG0180000235.01.T01:CDS 45.0%
CCCTCCCTCTATCTCTAATT+TGG - Chr1:3232462-3232481 None:intergenic 45.0%
CTTGACCCAGCATCATAGTT+TGG - Chr1:3233732-3233751 None:intergenic 45.0%
GCCATGGATAAGAGCCTAAA+AGG - Chr1:3233893-3233912 None:intergenic 45.0%
GTGAGTGTGTGTCTGTTCAA+TGG - Chr1:3234544-3234563 None:intergenic 45.0%
TAACACACCCATGTCAGGTA+TGG + Chr1:3231283-3231302 MsG0180000235.01.T01:exon 45.0%
TACCAACCTACAACCATCTC+TGG - Chr1:3232768-3232787 None:intergenic 45.0%
TGCAAGCACTTGAATAGGAG+AGG + Chr1:3233221-3233240 MsG0180000235.01.T01:intron 45.0%
TGGAGGTTCAATGCTACAAC+GGG - Chr1:3233255-3233274 None:intergenic 45.0%
TTAGATGAGTTGTGTCTCGG+AGG + Chr1:3231835-3231854 MsG0180000235.01.T01:intron 45.0%
TTAGATGAGTTTGGTCTCGG+AGG + Chr1:3231941-3231960 MsG0180000235.01.T01:intron 45.0%
TTGCAATTGCCAATGTCGGA+AGG + Chr1:3234685-3234704 MsG0180000235.01.T01:CDS 45.0%
TTGCTCAGATGAATCTAGGG+TGG - Chr1:3231375-3231394 None:intergenic 45.0%
TTGGTGAATTTAGGTAGGGC+TGG + Chr1:3231535-3231554 MsG0180000235.01.T01:intron 45.0%
TTTCTGTTTCAGGCCAGAGA+TGG + Chr1:3232752-3232771 MsG0180000235.01.T01:intron 45.0%
! ATGTACTGACCCCACTTAGT+GGG - Chr1:3233116-3233135 None:intergenic 45.0%
! GGTTGGTATCATTCACATCC+TGG + Chr1:3232780-3232799 MsG0180000235.01.T01:CDS 45.0%
! GTTGTAGCATTGAACCTCCA+AGG + Chr1:3233255-3233274 MsG0180000235.01.T01:intron 45.0%
! TCAGAGTGTTAAAGGCAAGG+TGG + Chr1:3233680-3233699 MsG0180000235.01.T01:CDS 45.0%
! TGCTCAGATGAATCTAGGGT+GGG - Chr1:3231374-3231393 None:intergenic 45.0%
!! ATCCACACAAGGCATTGTCA+TGG - Chr1:3233554-3233573 None:intergenic 45.0%
!! GGATAGATGGCTTGTTCAGA+TGG - Chr1:3233782-3233801 None:intergenic 45.0%
AATTGCCAATGTCGGAAGGC+AGG + Chr1:3234689-3234708 MsG0180000235.01.T01:CDS 50.0%
AGACCTGAGGGGTTGCTTAA+TGG + Chr1:3234436-3234455 MsG0180000235.01.T01:intron 50.0%
AGCCATGACAATGCCTTGTG+TGG + Chr1:3233549-3233568 MsG0180000235.01.T01:intron 50.0%
ATGTTGTGGGTGTAGACCTG+AGG + Chr1:3234423-3234442 MsG0180000235.01.T01:intron 50.0%
CAAAGAATGTTTGCGGGTGC+AGG + Chr1:3231314-3231333 MsG0180000235.01.T01:CDS 50.0%
CACTAAGTGGGGTCAGTACA+TGG + Chr1:3233115-3233134 MsG0180000235.01.T01:intron 50.0%
CTAACACCAGTACCACTCTG+AGG - Chr1:3231642-3231661 None:intergenic 50.0%
CTACTAGCAAGCTAGCTAGC+TGG + Chr1:3233321-3233340 MsG0180000235.01.T01:intron 50.0%
CTTGTTCAGATGGCCCAAGT+TGG - Chr1:3233772-3233791 None:intergenic 50.0%
GGACTGATGGTTTGACACTC+AGG + Chr1:3234000-3234019 MsG0180000235.01.T01:intron 50.0%
GGGAGGGAGGAACTTTCTAT+AGG + Chr1:3232475-3232494 MsG0180000235.01.T01:intron 50.0%
GTCGATAACACACCCATGTC+AGG + Chr1:3231278-3231297 MsG0180000235.01.T01:exon 50.0%
TGACCCCACTTAGTGGGATA+AGG - Chr1:3233110-3233129 None:intergenic 50.0%
TGTTGTGGGTGTAGACCTGA+GGG + Chr1:3234424-3234443 MsG0180000235.01.T01:intron 50.0%
TTCAGGCCAGAGATGGTTGT+AGG + Chr1:3232759-3232778 MsG0180000235.01.T01:intron 50.0%
! CATGTACTGACCCCACTTAG+TGG - Chr1:3233117-3233136 None:intergenic 50.0%
! CTCAGATGAATCTAGGGTGG+GGG - Chr1:3231372-3231391 None:intergenic 50.0%
! GCTCAGATGAATCTAGGGTG+GGG - Chr1:3231373-3231392 None:intergenic 50.0%
!! GGATGCTAAGAAGCACCTTG+AGG + Chr1:3234710-3234729 MsG0180000235.01.T01:CDS 50.0%
!! GGCTTTAAATCAACGGGCAG+TGG + Chr1:3233638-3233657 MsG0180000235.01.T01:CDS 50.0%
ACTGCGCTCTTTGAGCCTCA+AGG - Chr1:3231987-3232006 None:intergenic 55.0%
AGAATGTTTGCGGGTGCAGG+TGG + Chr1:3231317-3231336 MsG0180000235.01.T01:CDS 55.0%
AGCATCCTGCCTTCCGACAT+TGG - Chr1:3234697-3234716 None:intergenic 55.0%
AGTACAACAGGCAGTGCAGG+AGG + Chr1:3234638-3234657 MsG0180000235.01.T01:CDS 55.0%
CACATCCTGGATTTGGCTGC+TGG + Chr1:3232793-3232812 MsG0180000235.01.T01:CDS 55.0%
CCAAGTACAACAGGCAGTGC+AGG + Chr1:3234635-3234654 MsG0180000235.01.T01:CDS 55.0%
CCTGCACTGCCTGTTGTACT+TGG - Chr1:3234638-3234657 None:intergenic 55.0%
CTAGCAAGCTAGCTAGCTGG+TGG + Chr1:3233324-3233343 MsG0180000235.01.T01:intron 55.0%
GAAAGCCAGCAGCCAAATCC+AGG - Chr1:3232801-3232820 None:intergenic 55.0%
GCGACAGACACCTCCAACTT+GGG + Chr1:3233756-3233775 MsG0180000235.01.T01:CDS 55.0%
GCTATGCCTCAGAGTGGTAC+TGG + Chr1:3231633-3231652 MsG0180000235.01.T01:intron 55.0%
GGCCAGAGATGGTTGTAGGT+TGG + Chr1:3232763-3232782 MsG0180000235.01.T01:intron 55.0%
GTTGTGGGTGTAGACCTGAG+GGG + Chr1:3234425-3234444 MsG0180000235.01.T01:intron 55.0%
TCGGAGGCTCACTTGGGTTA+GGG + Chr1:3231957-3231976 MsG0180000235.01.T01:intron 55.0%
TTGGTCTCGGAGGCTCACTT+GGG + Chr1:3231951-3231970 MsG0180000235.01.T01:intron 55.0%
TTTGGTCTCGGAGGCTCACT+TGG + Chr1:3231950-3231969 MsG0180000235.01.T01:intron 55.0%
! AGGCTCACTTGGGTTAGGGA+AGG + Chr1:3231961-3231980 MsG0180000235.01.T01:intron 55.0%
! AGGTAGGGCTGGTGTACCTA+TGG + Chr1:3231546-3231565 MsG0180000235.01.T01:intron 55.0%
! GAATCTAGGGTGGGGGAATC+CGG - Chr1:3231365-3231384 None:intergenic 55.0%
! GTTCAGATGGCCCAAGTTGG+AGG - Chr1:3233769-3233788 None:intergenic 55.0%
! TTGGGTTAGGGAAGGCCTTG+AGG + Chr1:3231969-3231988 MsG0180000235.01.T01:intron 55.0%
!! CAAGTTGGAGGTGTCTGTCG+CGG - Chr1:3233757-3233776 None:intergenic 55.0%
CATGAAGCCTGCCCTGATCC+GGG - Chr1:3231865-3231884 None:intergenic 60.0%
CCATGAAGCCTGCCCTGATC+CGG - Chr1:3231866-3231885 None:intergenic 60.0%
CGCGACAGACACCTCCAACT+TGG + Chr1:3233755-3233774 MsG0180000235.01.T01:CDS 60.0%
CTCGGAGGCTCACTTGGGTT+AGG + Chr1:3231956-3231975 MsG0180000235.01.T01:intron 60.0%
TTGTGTCTCGGAGGCTCACC+CGG + Chr1:3231844-3231863 MsG0180000235.01.T01:intron 60.0%
!! TTGGCTGCTGGCTTTCCGTG+TGG + Chr1:3232805-3232824 MsG0180000235.01.T01:CDS 60.0%
ACTCGGCGGTCATCCACCAC+CGG + Chr1:3231343-3231362 MsG0180000235.01.T01:CDS 65.0%
CCGGATCAGGGCAGGCTTCA+TGG + Chr1:3231863-3231882 MsG0180000235.01.T01:intron 65.0%
TCAACGGGCAGTGGCTGTCG+TGG + Chr1:3233647-3233666 MsG0180000235.01.T01:CDS 65.0%
TCGGAGGCTCACCCGGATCA+GGG + Chr1:3231851-3231870 MsG0180000235.01.T01:intron 65.0%
! TCTAGGGTGGGGGAATCCGG+TGG - Chr1:3231362-3231381 None:intergenic 65.0%
ACGGGCAGTGGCTGTCGTGG+TGG + Chr1:3233650-3233669 MsG0180000235.01.T01:CDS 70.0%
AGGCTCACCCGGATCAGGGC+AGG + Chr1:3231855-3231874 MsG0180000235.01.T01:intron 70.0%
AGGGTGGGGGAATCCGGTGG+TGG - Chr1:3231359-3231378 None:intergenic 70.0%
CTCGGAGGCTCACCCGGATC+AGG + Chr1:3231850-3231869 MsG0180000235.01.T01:intron 70.0%
! GCGGGTGCAGGTGGAGCACT+CGG + Chr1:3231326-3231345 MsG0180000235.01.T01:CDS 70.0%
! GGTGCAGGTGGAGCACTCGG+CGG + Chr1:3231329-3231348 MsG0180000235.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 3231217 3235084 3231217 ID=MsG0180000235.01;Name=MsG0180000235.01
Chr1 mRNA 3231217 3235084 3231217 ID=MsG0180000235.01.T01;Parent=MsG0180000235.01;Name=MsG0180000235.01.T01;_AED=0.40;_eAED=0.41;_QI=76|0.4|0.5|1|1|1|6|278|268
Chr1 exon 3234616 3235084 3234616 ID=MsG0180000235.01.T01:exon:6207;Parent=MsG0180000235.01.T01
Chr1 exon 3233898 3234008 3233898 ID=MsG0180000235.01.T01:exon:6206;Parent=MsG0180000235.01.T01
Chr1 exon 3233630 3233807 3233630 ID=MsG0180000235.01.T01:exon:6205;Parent=MsG0180000235.01.T01
Chr1 exon 3232764 3232844 3232764 ID=MsG0180000235.01.T01:exon:6204;Parent=MsG0180000235.01.T01
Chr1 exon 3231548 3231648 3231548 ID=MsG0180000235.01.T01:exon:6203;Parent=MsG0180000235.01.T01
Chr1 exon 3231217 3231437 3231217 ID=MsG0180000235.01.T01:exon:6202;Parent=MsG0180000235.01.T01
Chr1 five_prime_UTR 3231217 3231292 3231217 ID=MsG0180000235.01.T01:five_prime_utr;Parent=MsG0180000235.01.T01
Chr1 CDS 3231293 3231437 3231293 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 CDS 3231548 3231648 3231548 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 CDS 3232764 3232844 3232764 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 CDS 3233630 3233807 3233630 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 CDS 3233898 3234008 3233898 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 CDS 3234616 3234806 3234616 ID=MsG0180000235.01.T01:cds;Parent=MsG0180000235.01.T01
Chr1 three_prime_UTR 3234807 3235084 3234807 ID=MsG0180000235.01.T01:three_prime_utr;Parent=MsG0180000235.01.T01
Gene Sequence

>MsG0180000235.01.T01

ATGTCAGGTATGGAAAGACTTCAAAGAATGTTTGCGGGTGCAGGTGGAGCACTCGGCGGTCATCCACCACCGGATTCCCCCACCCTAGATTCATCTGAGCAAGTTTACATCTCTTCCCTTGCTCTTCTCAAAATGCTCAAACATGGTAGGGCTGGTGTACCTATGGAAGTTATGGGTTTGATGTTGGGGGAGTTTGTTGATGAGTATACTGTTAGGGTTGTTGATTTTTTGCTATGCCTCAGAGTGGCCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGCTGGCTTTCCGTGTGGACATTAACACACAACAGAGTTTTGAGGCTTTAAATCAACGGGCAGTGGCTGTCGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTCATTGATGCTTTCCGGCTGATTAATCCAAACTATGATGCTGGGTCAAGAACCGCGACAGACACCTCCAACTTGGGCCATCTGAACAAGCCATCTATCCAAGTGAGCTCTTATCCATGGCTTGAACCGACATTATTATCAATAGCAATCAATTACAGGAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGAGATGCTGAGTTTAGCAACCAAGTACAACAGGCAGTGCAGGAGGAAGACGAGCTGTCACCAGAAAAACTTGCAATTGCCAATGTCGGAAGGCAGGATGCTAAGAAGCACCTTGAGGAGCATGTTTCTAATTTAATGTCATCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTGTTCTAG

Protein sequence

>MsG0180000235.01.T01

MSGMERLQRMFAGAGGALGGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDFLLCLRVARDGCRLVSFTSWIWLLAFRVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPNYDAGSRTATDTSNLGHLNKPSIQVSSYPWLEPTLLSIAINYRKNELEEKMLLNLHKKKWTDGDAEFSNQVQQAVQEEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF*