AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043589.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043589.01.T01 MTR_8g038390 95.494 466 15 1 1 466 1 460 0.0 901
MsG0880043589.01.T01 MTR_3g017580 84.009 469 66 2 1 466 27 489 0.0 776
MsG0880043589.01.T01 MTR_3g017580 84.009 469 66 2 1 466 7 469 0.0 776
MsG0880043589.01.T01 MTR_1g025060 83.582 469 68 2 1 466 7 469 0.0 770
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043589.01.T01 AT3G54470 74.200 469 112 3 1 466 4 466 0.0 715

Find 145 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTTCTCAGTGAGCTTTA+AGG 0.126315 8:+27379718 None:intergenic
TTCAAGGATGAATGCATATT+TGG 0.177826 8:-27376753 MsG0880043589.01.T01:exon
GAAGATAATGGGAGTGTATT+TGG 0.197748 8:-27381326 MsG0880043589.01.T01:five_prime_UTR
CAGAGGGATCTTTCATATAT+TGG 0.199334 8:-27378238 MsG0880043589.01.T01:CDS
GATATCTCAGCTGTCAAATT+TGG 0.202375 8:-27379662 MsG0880043589.01.T01:CDS
GAAGAAGGCATTGTCATATT+TGG 0.205194 8:-27379069 MsG0880043589.01.T01:CDS
GATCATTCTGACTTTGTTAT+TGG 0.242263 8:-27377955 MsG0880043589.01.T01:CDS
GCAATCACAACTCGAAATTA+TGG 0.256203 8:-27376515 MsG0880043589.01.T01:three_prime_UTR
GCGATCGGTGGTGATGGTTT+GGG 0.264314 8:-27377850 MsG0880043589.01.T01:CDS
GGCGATCGGTGGTGATGGTT+TGG 0.272966 8:-27377851 MsG0880043589.01.T01:CDS
TCAATCCAGCGTCGTGGTCT+AGG 0.288057 8:-27377921 MsG0880043589.01.T01:CDS
TACTAGTGGAACATCGGTTT+TGG 0.292483 8:-27379339 MsG0880043589.01.T01:CDS
TATTTGGAAAAGTACAATTA+AGG 0.295416 8:-27376737 MsG0880043589.01.T01:three_prime_UTR
GCAATAGGTAGGGCAGTATA+AGG 0.296272 8:+27379494 None:intergenic
AAATCAGAAGGTTGCTGCTT+TGG 0.305232 8:-27379108 MsG0880043589.01.T01:CDS
TATCATATTGAATGCAAGTT+TGG 0.316333 8:-27376610 MsG0880043589.01.T01:three_prime_UTR
AAAGAGGTTGTTTGAGATAA+TGG 0.328518 8:-27379015 MsG0880043589.01.T01:CDS
CCAAACTCTTCCATTTGGTT+AGG 0.334531 8:+27376705 None:intergenic
CAGAAGGGTAAGATATAATA+AGG 0.338277 8:+27379588 None:intergenic
AACTTGCATTCAATATGATA+TGG 0.342735 8:+27376613 None:intergenic
ATCTCCCTTGGCAAGGTTAC+CGG 0.343357 8:+27378008 None:intergenic
GTTGCAATACTTACAGAATA+TGG 0.343716 8:+27377811 None:intergenic
ACAAGGTGGAAGAGAGAATC+TGG 0.364094 8:-27379249 MsG0880043589.01.T01:CDS
AGGCGTAGGTCTATGTAAAT+TGG 0.365906 8:+27379608 None:intergenic
TGTTTCATTCATGCAACTCC+TGG 0.370072 8:-27377883 MsG0880043589.01.T01:CDS
GGTTGTTATGAGATTCTTAG+AGG 0.375138 8:-27379132 MsG0880043589.01.T01:CDS
ACACAACTTCTTAATATTTG+AGG 0.375899 8:-27378399 MsG0880043589.01.T01:CDS
CGCAAGGAAATCAAAGACTA+TGG 0.377270 8:-27379428 MsG0880043589.01.T01:CDS
CCTAACCAAATGGAAGAGTT+TGG 0.378899 8:-27376705 MsG0880043589.01.T01:three_prime_UTR
CAACACTCGCCATCGTATAA+AGG 0.379820 8:-27381271 MsG0880043589.01.T01:five_prime_UTR
GGCTTGATGAGGAGATGGTT+AGG 0.383602 8:-27379154 MsG0880043589.01.T01:CDS
CCGCTGCTGCATATGTTTGA+AGG 0.384369 8:+27381300 None:intergenic
TGTGGATGGACTGAAATTAA+AGG 0.386249 8:-27378169 MsG0880043589.01.T01:intron
GATCTTTCATATATTGGATT+GGG 0.387093 8:-27378232 MsG0880043589.01.T01:CDS
CCGAAATCCGGAGTAAAATC+TGG 0.398459 8:+27378681 None:intergenic
TAAGCATGGCCAAAGTTGTT+TGG 0.403073 8:-27379378 MsG0880043589.01.T01:CDS
CCAAAGTTGTTTGGTAATTG+AGG 0.407599 8:-27379369 MsG0880043589.01.T01:CDS
TTCAGTCCATCCACAATTCC+AGG 0.408605 8:+27378177 None:intergenic
CTCTGTTTGGCTGCGGATGT+TGG 0.411459 8:-27378975 MsG0880043589.01.T01:CDS
GGAAACTTCAAGCTTAAATC+CGG 0.413842 8:-27379641 MsG0880043589.01.T01:CDS
TGCGTTAAAGTGGAAGATAA+TGG 0.416689 8:-27381338 MsG0880043589.01.T01:five_prime_UTR
ACACACCAAACTCTTCCATT+TGG 0.422828 8:+27376700 None:intergenic
GCTTGTGAATACCGTCTTCA+AGG 0.426960 8:-27376769 MsG0880043589.01.T01:CDS
TAGGGTTTGCCTCGTGGAAA+GGG 0.428884 8:-27378060 MsG0880043589.01.T01:CDS
CAAACTCTTCCATTTGGTTA+GGG 0.434612 8:+27376706 None:intergenic
GAAGGAAAGTAATCTCTGTT+TGG 0.438745 8:-27378988 MsG0880043589.01.T01:CDS
AATTCTTAAATTGACTGAAA+TGG 0.439196 8:-27379201 MsG0880043589.01.T01:CDS
GCGTTAAAGTGGAAGATAAT+GGG 0.441522 8:-27381337 MsG0880043589.01.T01:five_prime_UTR
GGATCTTTCATATATTGGAT+TGG 0.442158 8:-27378233 MsG0880043589.01.T01:CDS
GCTCACATTATCTCTGGTCC+TGG 0.454214 8:-27378195 MsG0880043589.01.T01:CDS
TCATAGTTTGAGAAATTTGT+CGG 0.458857 8:+27379561 None:intergenic
AACTGAAAACTGCGTTAAAG+TGG 0.463450 8:-27381348 MsG0880043589.01.T01:five_prime_UTR
ACAGATACACAAGTGGCAAT+AGG 0.466504 8:+27379479 None:intergenic
ATTTGACAGCTGAGATATCA+TGG 0.469219 8:+27379666 None:intergenic
CCTCAATTACCAAACAACTT+TGG 0.470170 8:+27379369 None:intergenic
ATGCTTAAAATCCCCTTCAA+TGG 0.472118 8:+27379394 None:intergenic
ATAACTTCACACATAATGCT+TGG 0.472319 8:+27376564 None:intergenic
CAATCCAGCGTCGTGGTCTA+GGG 0.472624 8:-27377920 MsG0880043589.01.T01:CDS
GTAAATGCTCACATTATCTC+TGG 0.472821 8:-27378201 MsG0880043589.01.T01:CDS
TCAAACAACCTCTTTCCCAT+TGG 0.473332 8:+27379023 None:intergenic
TTAGGGTTTGCCTCGTGGAA+AGG 0.474549 8:-27378061 MsG0880043589.01.T01:intron
TGCAACTCCTGGAGTTCAAA+TGG 0.475453 8:-27377872 MsG0880043589.01.T01:CDS
TCCTTAAAGCTCACTGAGAA+AGG 0.478439 8:-27379719 MsG0880043589.01.T01:five_prime_UTR
TATCATCAAAGCAGCAAATC+CGG 0.479086 8:-27376800 MsG0880043589.01.T01:CDS
GCTTGTATTCCCTAACCAAA+TGG 0.481263 8:-27376715 MsG0880043589.01.T01:three_prime_UTR
TCAATATGATATGGATGTGC+AGG 0.483498 8:+27376622 None:intergenic
GCTTGATGAGGAGATGGTTA+GGG 0.487710 8:-27379153 MsG0880043589.01.T01:CDS
GGCACTTCTAAAGCCATTGA+AGG 0.492625 8:-27379407 MsG0880043589.01.T01:CDS
TAATGTCACTACCCCTATCA+TGG 0.494196 8:+27376839 None:intergenic
ACCTCGGCCATGCAGTATGA+AGG 0.495056 8:-27378350 MsG0880043589.01.T01:CDS
CTTTGTTATTGGCTTCATCT+CGG 0.496047 8:-27377944 MsG0880043589.01.T01:CDS
GCTGCGCCGTTGCGTAACAT+AGG 0.500507 8:-27379311 MsG0880043589.01.T01:CDS
CGATCGGTGGTGATGGTTTG+GGG 0.505389 8:-27377849 MsG0880043589.01.T01:CDS
GTTTGAGATAATGGCTGAGA+AGG 0.509959 8:-27379006 MsG0880043589.01.T01:CDS
CGAAGCTTAGAACCGAAATC+CGG 0.511784 8:+27378669 None:intergenic
CTGCGCCGTTGCGTAACATA+GGG 0.513130 8:-27379310 MsG0880043589.01.T01:CDS
AGAGAGAATCTGGAGAGTAA+TGG 0.516591 8:-27379239 MsG0880043589.01.T01:CDS
TGTGATTGCAATTTGTCACT+AGG 0.516614 8:+27376529 None:intergenic
ATTGAGGATTTAGTTACTAG+TGG 0.516671 8:-27379353 MsG0880043589.01.T01:CDS
CACTGAGAAAGGCACATCAA+TGG 0.517073 8:-27379708 MsG0880043589.01.T01:exon
CCGATCGCCATTTGAACTCC+AGG 0.521870 8:+27377865 None:intergenic
TGCAGCAGTGTAATCTCCCT+TGG 0.523218 8:+27377996 None:intergenic
TCTGGTCCTGGAATTGTGGA+TGG 0.523500 8:-27378183 MsG0880043589.01.T01:CDS
TATCTCTGGTCCTGGAATTG+TGG 0.523722 8:-27378187 MsG0880043589.01.T01:CDS
TATTCACAAGCTGCTGCAGC+CGG 0.525702 8:+27376781 None:intergenic
GTTGCGTAACATAGGGTTGA+AGG 0.525932 8:-27379303 MsG0880043589.01.T01:CDS
GTAAATTGGTGAGGAGATGC+CGG 0.527390 8:+27379622 None:intergenic
AGGAAGGCTTGATGAGGAGA+TGG 0.530753 8:-27379159 MsG0880043589.01.T01:CDS
CAAATGGCGATCGGTGGTGA+TGG 0.537216 8:-27377856 MsG0880043589.01.T01:CDS
TCCTTGCGGCGCATAACCAT+AGG 0.538031 8:+27379443 None:intergenic
GAAATTTGTCGGAGGACAGA+AGG 0.538225 8:+27379572 None:intergenic
GCACTTCTAAAGCCATTGAA+GGG 0.540930 8:-27379406 MsG0880043589.01.T01:CDS
CTTGCTGAAATGAGTTCAGC+CGG 0.550747 8:-27378027 MsG0880043589.01.T01:CDS
AAATACAACTAAGTTGAAGA+AGG 0.554785 8:-27379084 MsG0880043589.01.T01:CDS
CCCTTCATACTGCATGGCCG+AGG 0.557238 8:+27378349 None:intergenic
CCTTGCGGCGCATAACCATA+GGG 0.557370 8:+27379444 None:intergenic
ATACACAAGTGGCAATAGGT+AGG 0.560586 8:+27379483 None:intergenic
GGCATTGTCATATTTGGAGA+GGG 0.565982 8:-27379063 MsG0880043589.01.T01:CDS
CCCTATGGTTATGCGCCGCA+AGG 0.567893 8:-27379444 MsG0880043589.01.T01:CDS
TGTCACTCACAACATCCCTA+TGG 0.570619 8:-27379459 MsG0880043589.01.T01:CDS
CAATAGGTAGGGCAGTATAA+GGG 0.571437 8:+27379495 None:intergenic
CATAGTCTTTGATTTCCTTG+CGG 0.572557 8:+27379429 None:intergenic
GATCGTAAGTTTGCCGACAT+CGG 0.574286 8:-27378377 MsG0880043589.01.T01:CDS
ACTCAGCAGCGGCAATAACA+AGG 0.579558 8:-27381243 MsG0880043589.01.T01:intron
ATTCTTAGAGGAAAATCAGA+AGG 0.582001 8:-27379120 MsG0880043589.01.T01:CDS
TTCAGCCGGTAACCTTGCCA+AGG 0.587283 8:-27378013 MsG0880043589.01.T01:CDS
AATACTTAGGGTTTGCCTCG+TGG 0.591469 8:-27378066 MsG0880043589.01.T01:intron
TACACAAGTGGCAATAGGTA+GGG 0.593517 8:+27379484 None:intergenic
AAGTAATCTCTGTTTGGCTG+CGG 0.594715 8:-27378982 MsG0880043589.01.T01:CDS
AAATTTGTCGGAGGACAGAA+GGG 0.597712 8:+27379573 None:intergenic
GGCCGAGGTATTACCGATGT+CGG 0.597823 8:+27378364 None:intergenic
TTTAGTTACTAGTGGAACAT+CGG 0.598433 8:-27379345 MsG0880043589.01.T01:CDS
GACATTATCATAGTCGGACG+TGG 0.598657 8:-27376823 MsG0880043589.01.T01:CDS
TTTCAGGTTATCCATGATAG+GGG 0.599223 8:-27376850 MsG0880043589.01.T01:intron
TATAAGGGACACCGCAGACA+AGG 0.604577 8:+27379510 None:intergenic
TATGCAAAATTGCAGTAACA+TGG 0.604654 8:-27376646 MsG0880043589.01.T01:three_prime_UTR
CACTTCTAAAGCCATTGAAG+GGG 0.608981 8:-27379405 MsG0880043589.01.T01:CDS
GCATTACCCTTCATACTGCA+TGG 0.609301 8:+27378343 None:intergenic
GGTAAGATATAATAAGGCGT+AGG 0.610056 8:+27379594 None:intergenic
CCTGGAGTTCAAATGGCGAT+CGG 0.613183 8:-27377865 MsG0880043589.01.T01:CDS
GAGTTTGCACCTTTATACGA+TGG 0.613518 8:+27381262 None:intergenic
GGTAGTGACATTATCATAGT+CGG 0.618352 8:-27376829 MsG0880043589.01.T01:CDS
ATGCTTGCTGAAAACTCATG+TGG 0.618767 8:-27378712 MsG0880043589.01.T01:CDS
AGGCATTGTCATATTTGGAG+AGG 0.619569 8:-27379064 MsG0880043589.01.T01:CDS
CAGTGTAATCTCCCTTGGCA+AGG 0.626881 8:+27378001 None:intergenic
CCTCGGCCATGCAGTATGAA+GGG 0.628115 8:-27378349 MsG0880043589.01.T01:intron
TATGCATTCATCCTTGAAGA+CGG 0.634694 8:+27376758 None:intergenic
ATTGCTTGAAATTGCCGACA+AGG 0.638723 8:-27378940 MsG0880043589.01.T01:intron
AGTGCCCTAGACCACGACGC+TGG 0.638835 8:+27377916 None:intergenic
TTCAACCCTATGTTACGCAA+CGG 0.641906 8:+27379305 None:intergenic
ACAAAATTCGACCTTGTCTG+CGG 0.646538 8:-27379521 MsG0880043589.01.T01:CDS
GGAGTTCAAATGGCGATCGG+TGG 0.647339 8:-27377862 MsG0880043589.01.T01:CDS
TGCCGACATCGGTAATACCT+CGG 0.647655 8:-27378366 MsG0880043589.01.T01:CDS
CCTTCAAACATATGCAGCAG+CGG 0.648311 8:-27381300 MsG0880043589.01.T01:five_prime_UTR
TAGGTCTATGTAAATTGGTG+AGG 0.648398 8:+27379613 None:intergenic
TAGTTTGAGAAATTTGTCGG+AGG 0.654215 8:+27379564 None:intergenic
GGAGTTGCATGAATGAAACA+AGG 0.667159 8:+27377886 None:intergenic
TCAGCCGGTAACCTTGCCAA+GGG 0.668243 8:-27378012 MsG0880043589.01.T01:CDS
TGCAGCAGTGAAAATTGCTG+AGG 0.668834 8:-27377977 MsG0880043589.01.T01:CDS
TCTCGGTCAATCCAGCGTCG+TGG 0.669937 8:-27377927 MsG0880043589.01.T01:CDS
TAAAGGTGCAAACTCAGCAG+CGG 0.674726 8:-27381254 MsG0880043589.01.T01:five_prime_UTR
TTTCGGTTCTAAGCTTCGCG+CGG 0.682835 8:-27378664 MsG0880043589.01.T01:intron
TTGATTGATAGAGAACAAGG+TGG 0.705011 8:-27379263 MsG0880043589.01.T01:CDS
GTGAGTGACAGATACACAAG+TGG 0.716854 8:+27379472 None:intergenic
AGCAACAAACCCTTTCCACG+AGG 0.731068 8:+27378051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATAAAAAATATTAT+GGG - Chr8:27380418-27380437 MsG0880043589.01.T01:intron 0.0%
!! AAAACAATTTAACTATATTA+TGG - Chr8:27377231-27377250 MsG0880043589.01.T01:intron 10.0%
!! AAACAATTTAACTATATTAT+GGG - Chr8:27377232-27377251 MsG0880043589.01.T01:intron 10.0%
!! TAAAATAAAAAATATTATGG+GGG - Chr8:27380420-27380439 MsG0880043589.01.T01:intron 10.0%
!!! TTTTTTATTTAGAAAATGAA+TGG + Chr8:27380172-27380191 None:intergenic 10.0%
!! AAAATGATGAATAATACTTA+GGG - Chr8:27379777-27379796 MsG0880043589.01.T01:intron 15.0%
!! AATTAGTTAAAAGTTAGTTA+CGG - Chr8:27377062-27377081 MsG0880043589.01.T01:intron 15.0%
!! ACAAAAAGAATATAAATAAG+AGG + Chr8:27380874-27380893 None:intergenic 15.0%
!! TAAAATGATGAATAATACTT+AGG - Chr8:27379776-27379795 MsG0880043589.01.T01:intron 15.0%
!! TTTCAATACTGAATATTAAA+GGG + Chr8:27380830-27380849 None:intergenic 15.0%
!!! TAAATATTTTCATTTCAGTT+GGG - Chr8:27380449-27380468 MsG0880043589.01.T01:intron 15.0%
!!! TGTTAGTATTAGTAATTTTA+TGG + Chr8:27377431-27377450 None:intergenic 15.0%
!!! TTTTCAATACTGAATATTAA+AGG + Chr8:27380831-27380850 None:intergenic 15.0%
!! AAAAAATAATGCAATGAGTT+TGG + Chr8:27380744-27380763 None:intergenic 20.0%
!! AAAAATGAACCATCAATAAA+AGG - Chr8:27380188-27380207 MsG0880043589.01.T01:intron 20.0%
!! AAAATGAACCATCAATAAAA+GGG - Chr8:27380189-27380208 MsG0880043589.01.T01:intron 20.0%
!! AATTCTTAAATTGACTGAAA+TGG - Chr8:27378654-27378673 MsG0880043589.01.T01:intron 20.0%
!! ATTAGTTAAAAGTTAGTTAC+GGG - Chr8:27377063-27377082 MsG0880043589.01.T01:intron 20.0%
!! CAACTGAAATGAAAATATTT+AGG + Chr8:27380450-27380469 None:intergenic 20.0%
!! TTATGATCATAATTCTTCTA+TGG + Chr8:27379713-27379732 None:intergenic 20.0%
!! TTCAATACTGAATATTAAAG+GGG + Chr8:27380829-27380848 None:intergenic 20.0%
!!! AAATTTTGAAAGAAAAAGGA+AGG - Chr8:27378680-27378699 MsG0880043589.01.T01:CDS 20.0%
!!! AGATGTTAGATATAAGATTT+TGG + Chr8:27380281-27380300 None:intergenic 20.0%
!!! AGGAATTTTATGATTAAATC+TGG - Chr8:27377870-27377889 MsG0880043589.01.T01:CDS 20.0%
!!! CTAAATATTTTCATTTCAGT+TGG - Chr8:27380448-27380467 MsG0880043589.01.T01:intron 20.0%
!!! GAGATTTTTATTAATTCAAG+TGG - Chr8:27380544-27380563 MsG0880043589.01.T01:intron 20.0%
!!! GTGAAAATTTTGAAAGAAAA+AGG - Chr8:27378676-27378695 MsG0880043589.01.T01:CDS 20.0%
!!! TAATATTTTACTCATTTGTC+CGG + Chr8:27380371-27380390 None:intergenic 20.0%
!!! TATTTGGAAAAGTACAATTA+AGG - Chr8:27381118-27381137 MsG0880043589.01.T01:intron 20.0%
!!! TCTTAATTTGAAATATGGAT+TGG - Chr8:27379006-27379025 MsG0880043589.01.T01:CDS 20.0%
!!! TTGTTCTTAGAATTTTGATT+GGG + Chr8:27377720-27377739 None:intergenic 20.0%
!!! TTTGTATTTTCTTGTTTATC+AGG - Chr8:27379107-27379126 MsG0880043589.01.T01:CDS 20.0%
!!! TTTTTTGAAGTTGATTTATG+TGG - Chr8:27380760-27380779 MsG0880043589.01.T01:intron 20.0%
!!! TTTTTTTCAATTAAGATTGC+CGG - Chr8:27376852-27376871 MsG0880043589.01.T01:intron 20.0%
! AAATGAACCATCAATAAAAG+GGG - Chr8:27380190-27380209 MsG0880043589.01.T01:intron 25.0%
! AACTTGCATTCAATATGATA+TGG + Chr8:27381245-27381264 None:intergenic 25.0%
! ACACAACTTCTTAATATTTG+AGG - Chr8:27379456-27379475 MsG0880043589.01.T01:CDS 25.0%
! ACCTGAAAAAGAAAAACAAT+TGG + Chr8:27380993-27381012 None:intergenic 25.0%
! ATATGCAAGTTAAGTAAAGA+AGG + Chr8:27380699-27380718 None:intergenic 25.0%
! ATGACTAAAAAAGACATGTT+TGG + Chr8:27376982-27377001 None:intergenic 25.0%
! ATTTATATCGTAGCTTATAG+CGG - Chr8:27376733-27376752 MsG0880043589.01.T01:three_prime_UTR 25.0%
! CTAGTAGATAAACTCAAATA+AGG + Chr8:27377105-27377124 None:intergenic 25.0%
! GATCTTTCATATATTGGATT+GGG - Chr8:27379623-27379642 MsG0880043589.01.T01:CDS 25.0%
! GTATGAAATTCCTCAAAAAT+TGG + Chr8:27379380-27379399 None:intergenic 25.0%
! TAAAAAATTTCTCACCTTGT+CGG + Chr8:27378932-27378951 None:intergenic 25.0%
! TATCATATTGAATGCAAGTT+TGG - Chr8:27381245-27381264 MsG0880043589.01.T01:five_prime_UTR 25.0%
! TATGCAAGTTAAGTAAAGAA+GGG + Chr8:27380698-27380717 None:intergenic 25.0%
! TCATAGTTTGAGAAATTTGT+CGG + Chr8:27378297-27378316 None:intergenic 25.0%
! TCCATGATAGTTTATGAAAA+TGG - Chr8:27377193-27377212 MsG0880043589.01.T01:intron 25.0%
! TTAGTTAAAAGTTAGTTACG+GGG - Chr8:27377064-27377083 MsG0880043589.01.T01:intron 25.0%
! TTCAATTATGCCTATAAACT+AGG + Chr8:27377755-27377774 None:intergenic 25.0%
! TTGCAATTTCGATACATTTA+AGG - Chr8:27377472-27377491 MsG0880043589.01.T01:intron 25.0%
!! AAATACAACTAAGTTGAAGA+AGG - Chr8:27378771-27378790 MsG0880043589.01.T01:intron 25.0%
!! AATATTTTACTCATTTGTCC+GGG + Chr8:27380370-27380389 None:intergenic 25.0%
!! ACCATTTTCATAAACTATCA+TGG + Chr8:27377197-27377216 None:intergenic 25.0%
!! CAACATTTAACCAATTTTTG+AGG - Chr8:27379367-27379386 MsG0880043589.01.T01:CDS 25.0%
!! GAGTGTCTTAATTTGAAATA+TGG - Chr8:27379001-27379020 MsG0880043589.01.T01:CDS 25.0%
!! GATTTAACAAAGAGTTTGTT+TGG + Chr8:27377042-27377061 None:intergenic 25.0%
!! TATTTTTCCAGATTTTACTC+CGG - Chr8:27379167-27379186 MsG0880043589.01.T01:CDS 25.0%
!!! AAGCACTTACTTTTAACATT+TGG - Chr8:27380314-27380333 MsG0880043589.01.T01:intron 25.0%
!!! ACCAATTGTTTTTCTTTTTC+AGG - Chr8:27380989-27381008 MsG0880043589.01.T01:intron 25.0%
!!! AGCACTTACTTTTAACATTT+GGG - Chr8:27380315-27380334 MsG0880043589.01.T01:intron 25.0%
!!! ATTTTCTTGTTTATCAGGTT+GGG - Chr8:27379112-27379131 MsG0880043589.01.T01:CDS 25.0%
!!! GAAATTTTTTATTACAGCGA+TGG - Chr8:27378941-27378960 MsG0880043589.01.T01:CDS 25.0%
!!! GTCTGTTTTATTAGTCATTT+TGG - Chr8:27377340-27377359 MsG0880043589.01.T01:intron 25.0%
!!! GTTGTTCTTAGAATTTTGAT+TGG + Chr8:27377721-27377740 None:intergenic 25.0%
!!! TATTTTCTTGTTTATCAGGT+TGG - Chr8:27379111-27379130 MsG0880043589.01.T01:CDS 25.0%
!!! TTTACAGTTTTGATACATTC+AGG + Chr8:27377307-27377326 None:intergenic 25.0%
!!! TTTTTTCAATTAAGATTGCC+GGG - Chr8:27376853-27376872 MsG0880043589.01.T01:intron 25.0%
AAAATCCAATCCTATAGGAT+AGG + Chr8:27380673-27380692 None:intergenic 30.0%
AAATCCAATCCTATAGGATA+GGG + Chr8:27380672-27380691 None:intergenic 30.0%
AAGTTGTCCAAAAATCCAAT+GGG - Chr8:27378817-27378836 MsG0880043589.01.T01:intron 30.0%
AATACTGAATATTAAAGGGG+TGG + Chr8:27380826-27380845 None:intergenic 30.0%
AATTGCAAACATGTCTATCA+TGG + Chr8:27377460-27377479 None:intergenic 30.0%
ACAACCTAAAAACATATCTG+AGG + Chr8:27377367-27377386 None:intergenic 30.0%
ACTAATAAAACAGACACTTG+AGG + Chr8:27377335-27377354 None:intergenic 30.0%
ATAAAACAACCCTATCCTAT+AGG - Chr8:27380660-27380679 MsG0880043589.01.T01:intron 30.0%
ATAACTTCACACATAATGCT+TGG + Chr8:27381294-27381313 None:intergenic 30.0%
ATACTGAATATTAAAGGGGT+GGG + Chr8:27380825-27380844 None:intergenic 30.0%
ATAGGCATAATTGAATCAAG+TGG - Chr8:27377760-27377779 MsG0880043589.01.T01:intron 30.0%
ATGCAAGTTAAGTAAAGAAG+GGG + Chr8:27380697-27380716 None:intergenic 30.0%
ATTCTTAGAGGAAAATCAGA+AGG - Chr8:27378735-27378754 MsG0880043589.01.T01:intron 30.0%
ATTGAGGATTTAGTTACTAG+TGG - Chr8:27378502-27378521 MsG0880043589.01.T01:intron 30.0%
CAGAAGGGTAAGATATAATA+AGG + Chr8:27378270-27378289 None:intergenic 30.0%
CATATGTGAAGGATCATATA+TGG - Chr8:27380113-27380132 MsG0880043589.01.T01:intron 30.0%
GGATCTTTCATATATTGGAT+TGG - Chr8:27379622-27379641 MsG0880043589.01.T01:CDS 30.0%
GTTCTCTTAAATATCATCGA+AGG - Chr8:27379045-27379064 MsG0880043589.01.T01:CDS 30.0%
GTTGCAATACTTACAGAATA+TGG + Chr8:27380047-27380066 None:intergenic 30.0%
TAAGTTGTCCAAAAATCCAA+TGG - Chr8:27378816-27378835 MsG0880043589.01.T01:intron 30.0%
TATGCAAAATTGCAGTAACA+TGG - Chr8:27381209-27381228 MsG0880043589.01.T01:intron 30.0%
TCTCTAACAACCTAGTTTAT+AGG - Chr8:27377742-27377761 MsG0880043589.01.T01:intron 30.0%
TGAGGAATTTCATACATTTC+TGG - Chr8:27379385-27379404 MsG0880043589.01.T01:CDS 30.0%
TTATCAATTGAGTACACTCT+TGG - Chr8:27380228-27380247 MsG0880043589.01.T01:intron 30.0%
TTCAAGGATGAATGCATATT+TGG - Chr8:27381102-27381121 MsG0880043589.01.T01:intron 30.0%
TTCATAAACTATCATGGAGA+AGG + Chr8:27377191-27377210 None:intergenic 30.0%
TTCGATACATTTAAGGACTA+TGG - Chr8:27377479-27377498 MsG0880043589.01.T01:intron 30.0%
TTTAGTTACTAGTGGAACAT+CGG - Chr8:27378510-27378529 MsG0880043589.01.T01:intron 30.0%
! AAAGAGGTTGTTTGAGATAA+TGG - Chr8:27378840-27378859 MsG0880043589.01.T01:intron 30.0%
! GAAATTATGGATTGAGATTG+CGG - Chr8:27381353-27381372 MsG0880043589.01.T01:five_prime_UTR 30.0%
! GATCATTCTGACTTTGTTAT+TGG - Chr8:27379900-27379919 MsG0880043589.01.T01:intron 30.0%
!! ATATAAGATTTTGGAGAGCT+CGG + Chr8:27380272-27380291 None:intergenic 30.0%
!! TTTTTCAATTAAGATTGCCG+GGG - Chr8:27376854-27376873 MsG0880043589.01.T01:intron 30.0%
!!! GTTTTGATTGATAGAGAACA+AGG - Chr8:27378589-27378608 MsG0880043589.01.T01:intron 30.0%
!!! TTTTCAGGTTATCCATGATA+GGG - Chr8:27381004-27381023 MsG0880043589.01.T01:intron 30.0%
!!! TTTTTCAGGTTATCCATGAT+AGG - Chr8:27381003-27381022 MsG0880043589.01.T01:intron 30.0%
AAACCTTATCCCACTAACTT+GGG - Chr8:27380945-27380964 MsG0880043589.01.T01:intron 35.0%
AACCATTACTTGAGGTTACA+TGG - Chr8:27380593-27380612 MsG0880043589.01.T01:intron 35.0%
AACTGAAAACTGCGTTAAAG+TGG - Chr8:27376507-27376526 MsG0880043589.01.T01:three_prime_UTR 35.0%
AAGTAAGTGCTTCATAGATG+TGG + Chr8:27380306-27380325 None:intergenic 35.0%
AAGTCTATGCTCATATGTGA+AGG - Chr8:27380102-27380121 MsG0880043589.01.T01:intron 35.0%
ACCAACAAAAAACACATTCG+AGG + Chr8:27377399-27377418 None:intergenic 35.0%
AGTATCAGTATGCAATACTC+AGG + Chr8:27379244-27379263 None:intergenic 35.0%
ATATCTCATCTCATCCAATG+TGG + Chr8:27377649-27377668 None:intergenic 35.0%
ATGAATGCAGAAACAGATGA+AGG + Chr8:27379570-27379589 None:intergenic 35.0%
ATGATTGAATTTGCACTGTC+TGG - Chr8:27376765-27376784 MsG0880043589.01.T01:CDS 35.0%
ATGCTTAAAATCCCCTTCAA+TGG + Chr8:27378464-27378483 None:intergenic 35.0%
ATTTGACAGCTGAGATATCA+TGG + Chr8:27378192-27378211 None:intergenic 35.0%
CAAACTCTTCCATTTGGTTA+GGG + Chr8:27381152-27381171 None:intergenic 35.0%
CAGAGGGATCTTTCATATAT+TGG - Chr8:27379617-27379636 MsG0880043589.01.T01:CDS 35.0%
CATACATTCAGCTACTCAAA+TGG - Chr8:27377519-27377538 MsG0880043589.01.T01:intron 35.0%
CCTCAATTACCAAACAACTT+TGG + Chr8:27378489-27378508 None:intergenic 35.0%
CTGATTCCTCACATCATAAA+GGG + Chr8:27377852-27377871 None:intergenic 35.0%
GAAGGAAAGTAATCTCTGTT+TGG - Chr8:27378867-27378886 MsG0880043589.01.T01:intron 35.0%
GAGATTTGAACCATTACTTG+AGG - Chr8:27380585-27380604 MsG0880043589.01.T01:intron 35.0%
GATATCTCAGCTGTCAAATT+TGG - Chr8:27378193-27378212 MsG0880043589.01.T01:CDS 35.0%
GCAATCACAACTCGAAATTA+TGG - Chr8:27381340-27381359 MsG0880043589.01.T01:five_prime_UTR 35.0%
GCGTTAAAGTGGAAGATAAT+GGG - Chr8:27376518-27376537 MsG0880043589.01.T01:three_prime_UTR 35.0%
GGAAACTTCAAGCTTAAATC+CGG - Chr8:27378214-27378233 MsG0880043589.01.T01:CDS 35.0%
GGTAAGATATAATAAGGCGT+AGG + Chr8:27378264-27378283 None:intergenic 35.0%
GGTAGTGACATTATCATAGT+CGG - Chr8:27381026-27381045 MsG0880043589.01.T01:intron 35.0%
GGTTGTTATGAGATTCTTAG+AGG - Chr8:27378723-27378742 MsG0880043589.01.T01:CDS 35.0%
GTAAATGCTCACATTATCTC+TGG - Chr8:27379654-27379673 MsG0880043589.01.T01:CDS 35.0%
GTATCAGTATGCAATACTCA+GGG + Chr8:27379243-27379262 None:intergenic 35.0%
TAGGTCTATGTAAATTGGTG+AGG + Chr8:27378245-27378264 None:intergenic 35.0%
TAGTTTGAGAAATTTGTCGG+AGG + Chr8:27378294-27378313 None:intergenic 35.0%
TATCATCAAAGCAGCAAATC+CGG - Chr8:27381055-27381074 MsG0880043589.01.T01:intron 35.0%
TATCATCGAAGGTTGAAGTT+TGG - Chr8:27379056-27379075 MsG0880043589.01.T01:CDS 35.0%
TATCTCATCTCATCCAATGT+GGG + Chr8:27377648-27377667 None:intergenic 35.0%
TATGCATTCATCCTTGAAGA+CGG + Chr8:27381100-27381119 None:intergenic 35.0%
TCAATATGATATGGATGTGC+AGG + Chr8:27381236-27381255 None:intergenic 35.0%
TCCACTTATAAACAGGTTGT+CGG + Chr8:27377675-27377694 None:intergenic 35.0%
TCTGCAGACAACATAAAAGA+AGG + Chr8:27379601-27379620 None:intergenic 35.0%
TGCGTTAAAGTGGAAGATAA+TGG - Chr8:27376517-27376536 MsG0880043589.01.T01:three_prime_UTR 35.0%
TGCTTTCATGTCAAAGCTAT+CGG - Chr8:27377562-27377581 MsG0880043589.01.T01:intron 35.0%
TGGTAATTAGCAATGCTTAC+AGG + Chr8:27380071-27380090 None:intergenic 35.0%
TGTGATTGCAATTTGTCACT+AGG + Chr8:27381329-27381348 None:intergenic 35.0%
TTGATTGATAGAGAACAAGG+TGG - Chr8:27378592-27378611 MsG0880043589.01.T01:intron 35.0%
! AACAATCAGTGTCATTCAGT+GGG + Chr8:27378099-27378118 None:intergenic 35.0%
! AATGACACTGATTGTTCTGA+AGG - Chr8:27378103-27378122 MsG0880043589.01.T01:intron 35.0%
! ACACGTTACACTCTTTTTGT+AGG + Chr8:27379338-27379357 None:intergenic 35.0%
! ATTGAAGGGGATTTTAAGCA+TGG - Chr8:27378463-27378482 MsG0880043589.01.T01:intron 35.0%
! CACATATGAGCATAGACTTT+TGG + Chr8:27380101-27380120 None:intergenic 35.0%
! CATAGTCTTTGATTTCCTTG+CGG + Chr8:27378429-27378448 None:intergenic 35.0%
! CCAAAGTTGTTTGGTAATTG+AGG - Chr8:27378486-27378505 MsG0880043589.01.T01:intron 35.0%
! TACTGATCCCCTTTTATTGA+TGG + Chr8:27380200-27380219 None:intergenic 35.0%
! TCTTTTATGTTGTCTGCAGA+GGG - Chr8:27379601-27379620 MsG0880043589.01.T01:CDS 35.0%
! TGGTCCTCAGATATGTTTTT+AGG - Chr8:27377360-27377379 MsG0880043589.01.T01:intron 35.0%
! TTATGGGTAAACCACCATTT+TGG - Chr8:27377248-27377267 MsG0880043589.01.T01:intron 35.0%
! TTCTTTTATGTTGTCTGCAG+AGG - Chr8:27379600-27379619 MsG0880043589.01.T01:CDS 35.0%
!! ATCATCTCAGTTTTATACCC+CGG + Chr8:27376874-27376893 None:intergenic 35.0%
!! CTTTGTTATTGGCTTCATCT+CGG - Chr8:27379911-27379930 MsG0880043589.01.T01:intron 35.0%
!! GAAGAAGGCATTGTCATATT+TGG - Chr8:27378786-27378805 MsG0880043589.01.T01:intron 35.0%
!! GAAGATAATGGGAGTGTATT+TGG - Chr8:27376529-27376548 MsG0880043589.01.T01:three_prime_UTR 35.0%
!! GAAGCAGAGTACTTTTAGTA+AGG - Chr8:27377817-27377836 MsG0880043589.01.T01:CDS 35.0%
!! TGTGGATGGACTGAAATTAA+AGG - Chr8:27379686-27379705 MsG0880043589.01.T01:CDS 35.0%
!! TTTCAGGTTATCCATGATAG+GGG - Chr8:27381005-27381024 MsG0880043589.01.T01:intron 35.0%
!!! TCCTCGAATGTGTTTTTTGT+TGG - Chr8:27377395-27377414 MsG0880043589.01.T01:intron 35.0%
AAATTTGTCGGAGGACAGAA+GGG + Chr8:27378285-27378304 None:intergenic 40.0%
AAGTAATCTCTGTTTGGCTG+CGG - Chr8:27378873-27378892 MsG0880043589.01.T01:intron 40.0%
ACAAAATTCGACCTTGTCTG+CGG - Chr8:27378334-27378353 MsG0880043589.01.T01:intron 40.0%
ACAACCCTATCCTATAGGAT+TGG - Chr8:27380665-27380684 MsG0880043589.01.T01:intron 40.0%
ACACACCAAACTCTTCCATT+TGG + Chr8:27381158-27381177 None:intergenic 40.0%
ACAGATACACAAGTGGCAAT+AGG + Chr8:27378379-27378398 None:intergenic 40.0%
AGAAAAAGGAAGGCTTGATG+AGG - Chr8:27378690-27378709 MsG0880043589.01.T01:CDS 40.0%
AGAGAGAATCTGGAGAGTAA+TGG - Chr8:27378616-27378635 MsG0880043589.01.T01:intron 40.0%
AGGCGTAGGTCTATGTAAAT+TGG + Chr8:27378250-27378269 None:intergenic 40.0%
ATACACAAGTGGCAATAGGT+AGG + Chr8:27378375-27378394 None:intergenic 40.0%
ATCCAGTCCTATGTGTTAGA+GGG - Chr8:27377608-27377627 MsG0880043589.01.T01:intron 40.0%
ATCGTATCGCAGAACAATAG+CGG - Chr8:27377997-27378016 MsG0880043589.01.T01:CDS 40.0%
ATTGCTTGAAATTGCCGACA+AGG - Chr8:27378915-27378934 MsG0880043589.01.T01:intron 40.0%
CAAACCTTATCCCACTAACT+TGG - Chr8:27380944-27380963 MsG0880043589.01.T01:intron 40.0%
CAATAGGTAGGGCAGTATAA+GGG + Chr8:27378363-27378382 None:intergenic 40.0%
CATTTGGGTCTACTCTATGA+AGG - Chr8:27380330-27380349 MsG0880043589.01.T01:intron 40.0%
CCAAAAATCCAATGGGAAAG+AGG - Chr8:27378824-27378843 MsG0880043589.01.T01:intron 40.0%
CCAAACTCTTCCATTTGGTT+AGG + Chr8:27381153-27381172 None:intergenic 40.0%
CCACTTATAAACAGGTTGTC+GGG + Chr8:27377674-27377693 None:intergenic 40.0%
CCTAACCAAATGGAAGAGTT+TGG - Chr8:27381150-27381169 MsG0880043589.01.T01:intron 40.0%
CCTGATTCCTCACATCATAA+AGG + Chr8:27377853-27377872 None:intergenic 40.0%
CCTTTATGATGTGAGGAATC+AGG - Chr8:27377850-27377869 MsG0880043589.01.T01:CDS 40.0%
CGCAAGGAAATCAAAGACTA+TGG - Chr8:27378427-27378446 MsG0880043589.01.T01:intron 40.0%
GACAACCTGTTTATAAGTGG+AGG - Chr8:27377674-27377693 MsG0880043589.01.T01:intron 40.0%
GAGTTTGCACCTTTATACGA+TGG + Chr8:27376596-27376615 None:intergenic 40.0%
GATTGGGCTCTTTATAAGTG+AGG + Chr8:27377704-27377723 None:intergenic 40.0%
GCTAGCTCATAGTAGATCTT+AGG + Chr8:27380619-27380638 None:intergenic 40.0%
GCTTGTATTCCCTAACCAAA+TGG - Chr8:27381140-27381159 MsG0880043589.01.T01:intron 40.0%
GCTTTCATGTCAAAGCTATC+GGG - Chr8:27377563-27377582 MsG0880043589.01.T01:intron 40.0%
GGAGTTGCATGAATGAAACA+AGG + Chr8:27379972-27379991 None:intergenic 40.0%
GGCATTGTCATATTTGGAGA+GGG - Chr8:27378792-27378811 MsG0880043589.01.T01:intron 40.0%
GGGGAAAAATCCAATCCTAT+AGG + Chr8:27380678-27380697 None:intergenic 40.0%
GTTAGTGGGATAAGGTTTGT+TGG + Chr8:27380943-27380962 None:intergenic 40.0%
TAAGCATGGCCAAAGTTGTT+TGG - Chr8:27378477-27378496 MsG0880043589.01.T01:intron 40.0%
TAATGTCACTACCCCTATCA+TGG + Chr8:27381019-27381038 None:intergenic 40.0%
TACACAAGTGGCAATAGGTA+GGG + Chr8:27378374-27378393 None:intergenic 40.0%
TATCCAGTCCTATGTGTTAG+AGG - Chr8:27377607-27377626 MsG0880043589.01.T01:intron 40.0%
TATGAAGGGTAATGCATTGC+TGG - Chr8:27379520-27379539 MsG0880043589.01.T01:CDS 40.0%
TCAAACAACCTCTTTCCCAT+TGG + Chr8:27378835-27378854 None:intergenic 40.0%
TCCTTAAAGCTCACTGAGAA+AGG - Chr8:27378136-27378155 MsG0880043589.01.T01:intron 40.0%
TGTCATCCCTTTATGATGTG+AGG - Chr8:27377843-27377862 MsG0880043589.01.T01:CDS 40.0%
TGTTTCATTCATGCAACTCC+TGG - Chr8:27379972-27379991 MsG0880043589.01.T01:intron 40.0%
TTATGTGGCATGCAGTAACT+AGG - Chr8:27380775-27380794 MsG0880043589.01.T01:intron 40.0%
TTCAACCCTATGTTACGCAA+CGG + Chr8:27378553-27378572 None:intergenic 40.0%
! AAATCAGAAGGTTGCTGCTT+TGG - Chr8:27378747-27378766 MsG0880043589.01.T01:intron 40.0%
! AGGCATTGTCATATTTGGAG+AGG - Chr8:27378791-27378810 MsG0880043589.01.T01:intron 40.0%
! ATGCTTGCTGAAAACTCATG+TGG - Chr8:27379143-27379162 MsG0880043589.01.T01:CDS 40.0%
! CCAGATTTTACTCCGGATTT+CGG - Chr8:27379174-27379193 MsG0880043589.01.T01:CDS 40.0%
! CCTCTTTCCCATTGGATTTT+TGG + Chr8:27378827-27378846 None:intergenic 40.0%
! GAACAATCAGTGTCATTCAG+TGG + Chr8:27378100-27378119 None:intergenic 40.0%
! GAATTTTGTGTTGGAGACAG+AGG + Chr8:27378323-27378342 None:intergenic 40.0%
! GACAAGGTCGAATTTTGTGT+TGG + Chr8:27378332-27378351 None:intergenic 40.0%
! GTTTGAGATAATGGCTGAGA+AGG - Chr8:27378849-27378868 MsG0880043589.01.T01:intron 40.0%
! TACACTTTGAGGGACCAAAA+TGG + Chr8:27377265-27377284 None:intergenic 40.0%
!! CACTTCTAAAGCCATTGAAG+GGG - Chr8:27378450-27378469 MsG0880043589.01.T01:intron 40.0%
!! CATAGACTTTTGGAGACAGT+TGG + Chr8:27380091-27380110 None:intergenic 40.0%
!! GCACTTCTAAAGCCATTGAA+GGG - Chr8:27378449-27378468 MsG0880043589.01.T01:intron 40.0%
!! TTCACTTGGCAAGCCATTTT+GGG - Chr8:27380514-27380533 MsG0880043589.01.T01:intron 40.0%
!!! TACTAGTGGAACATCGGTTT+TGG - Chr8:27378516-27378535 MsG0880043589.01.T01:intron 40.0%
AAGGTCCTGGGTTAAAAACC+CGG - Chr8:27380349-27380368 MsG0880043589.01.T01:intron 45.0%
AATACTTAGGGTTTGCCTCG+TGG - Chr8:27379789-27379808 MsG0880043589.01.T01:intron 45.0%
ACAAGGTGGAAGAGAGAATC+TGG - Chr8:27378606-27378625 MsG0880043589.01.T01:intron 45.0%
AGTGTAACTCGCTGTCACAT+TGG - Chr8:27377279-27377298 MsG0880043589.01.T01:intron 45.0%
CAACACTCGCCATCGTATAA+AGG - Chr8:27376584-27376603 MsG0880043589.01.T01:three_prime_UTR 45.0%
CCCGACAACCTGTTTATAAG+TGG - Chr8:27377671-27377690 MsG0880043589.01.T01:intron 45.0%
CCGAAATCCGGAGTAAAATC+TGG + Chr8:27379177-27379196 None:intergenic 45.0%
CCTTCAAACATATGCAGCAG+CGG - Chr8:27376555-27376574 MsG0880043589.01.T01:three_prime_UTR 45.0%
CGAAGCTTAGAACCGAAATC+CGG + Chr8:27379189-27379208 None:intergenic 45.0%
CTGAATATTAAAGGGGTGGG+TGG + Chr8:27380822-27380841 None:intergenic 45.0%
CTTATCCCACTAACTTGGGT+CGG - Chr8:27380949-27380968 MsG0880043589.01.T01:intron 45.0%
CTTCCACTTCTCATGCACTT+GGG + Chr8:27377801-27377820 None:intergenic 45.0%
CTTGCTGAAATGAGTTCAGC+CGG - Chr8:27379828-27379847 MsG0880043589.01.T01:intron 45.0%
GAAATTTGTCGGAGGACAGA+AGG + Chr8:27378286-27378305 None:intergenic 45.0%
GACAGCGAGTTACACTTTGA+GGG + Chr8:27377275-27377294 None:intergenic 45.0%
GACATTATCATAGTCGGACG+TGG - Chr8:27381032-27381051 MsG0880043589.01.T01:intron 45.0%
GACTGCCTCCACTTATAAAC+AGG + Chr8:27377682-27377701 None:intergenic 45.0%
GATCGTAAGTTTGCCGACAT+CGG - Chr8:27379478-27379497 MsG0880043589.01.T01:CDS 45.0%
GCAATAGGTAGGGCAGTATA+AGG + Chr8:27378364-27378383 None:intergenic 45.0%
GCATTACCCTTCATACTGCA+TGG + Chr8:27379515-27379534 None:intergenic 45.0%
GCCTTTCTCAGTGAGCTTTA+AGG + Chr8:27378140-27378159 None:intergenic 45.0%
GCTTGATGAGGAGATGGTTA+GGG - Chr8:27378702-27378721 MsG0880043589.01.T01:CDS 45.0%
GCTTGTGAATACCGTCTTCA+AGG - Chr8:27381086-27381105 MsG0880043589.01.T01:intron 45.0%
GGCCATGTAACCTCAAGTAA+TGG + Chr8:27380598-27380617 None:intergenic 45.0%
GTAAATTGGTGAGGAGATGC+CGG + Chr8:27378236-27378255 None:intergenic 45.0%
GTCTACTCTATGAAGGTCCT+GGG - Chr8:27380337-27380356 MsG0880043589.01.T01:intron 45.0%
GTGAGTGACAGATACACAAG+TGG + Chr8:27378386-27378405 None:intergenic 45.0%
GTGTGTTAAGAGTCCCACAT+TGG - Chr8:27377632-27377651 MsG0880043589.01.T01:intron 45.0%
GTTGCGTAACATAGGGTTGA+AGG - Chr8:27378552-27378571 MsG0880043589.01.T01:intron 45.0%
TATCTCTGGTCCTGGAATTG+TGG - Chr8:27379668-27379687 MsG0880043589.01.T01:CDS 45.0%
TCCAGTCCTATGTGTTAGAG+GGG - Chr8:27377609-27377628 MsG0880043589.01.T01:intron 45.0%
TGACAGCGAGTTACACTTTG+AGG + Chr8:27377276-27377295 None:intergenic 45.0%
TGCAACTCCTGGAGTTCAAA+TGG - Chr8:27379983-27380002 MsG0880043589.01.T01:intron 45.0%
TGCAGCAGTGAAAATTGCTG+AGG - Chr8:27379878-27379897 MsG0880043589.01.T01:intron 45.0%
TGTCACTCACAACATCCCTA+TGG - Chr8:27378396-27378415 MsG0880043589.01.T01:CDS 45.0%
TTAGTTACGGGGAGAACGTT+TGG - Chr8:27377075-27377094 MsG0880043589.01.T01:intron 45.0%
TTCAGTCCATCCACAATTCC+AGG + Chr8:27379681-27379700 None:intergenic 45.0%
! ACTTTGAGGGACCAAAATGG+TGG + Chr8:27377262-27377281 None:intergenic 45.0%
! CACTGAGAAAGGCACATCAA+TGG - Chr8:27378147-27378166 MsG0880043589.01.T01:intron 45.0%
! CTTCACTTGGCAAGCCATTT+TGG - Chr8:27380513-27380532 MsG0880043589.01.T01:intron 45.0%
! TAAAGGTGCAAACTCAGCAG+CGG - Chr8:27376601-27376620 MsG0880043589.01.T01:three_prime_UTR 45.0%
! TTTGTCCGGGTTTTTAACCC+AGG + Chr8:27380357-27380376 None:intergenic 45.0%
!! GGCACTTCTAAAGCCATTGA+AGG - Chr8:27378448-27378467 MsG0880043589.01.T01:intron 45.0%
!! TCACTTGGCAAGCCATTTTG+GGG - Chr8:27380515-27380534 MsG0880043589.01.T01:intron 45.0%
!! TGGGATAAGGTTTGTTGGTG+TGG + Chr8:27380938-27380957 None:intergenic 45.0%
!! CATTAAAATAAAAAATATTA+TGG - Chr8:27380417-27380436 MsG0880043589.01.T01:intron 5.0%
!! TTAAAATAAAAAATATTATG+GGG - Chr8:27380419-27380438 MsG0880043589.01.T01:intron 5.0%
AATCTCCCCCTTCCCCAAAA+TGG + Chr8:27380530-27380549 None:intergenic 50.0%
ACACACCCCCTCTAACACAT+AGG + Chr8:27377618-27377637 None:intergenic 50.0%
ACTCAGCAGCGGCAATAACA+AGG - Chr8:27376612-27376631 MsG0880043589.01.T01:three_prime_UTR 50.0%
AGATAGCCGACCCAAGTTAG+TGG + Chr8:27380958-27380977 None:intergenic 50.0%
AGCAACAAACCCTTTCCACG+AGG + Chr8:27379807-27379826 None:intergenic 50.0%
AGGAAGGCTTGATGAGGAGA+TGG - Chr8:27378696-27378715 MsG0880043589.01.T01:CDS 50.0%
ATCTCCCTTGGCAAGGTTAC+CGG + Chr8:27379850-27379869 None:intergenic 50.0%
CAGTGTAATCTCCCTTGGCA+AGG + Chr8:27379857-27379876 None:intergenic 50.0%
CCAGTCCTATGTGTTAGAGG+GGG - Chr8:27377610-27377629 MsG0880043589.01.T01:intron 50.0%
CCGCTGCTGCATATGTTTGA+AGG + Chr8:27376558-27376577 None:intergenic 50.0%
CCTGGAGTTCAAATGGCGAT+CGG - Chr8:27379990-27380009 MsG0880043589.01.T01:intron 50.0%
CGACCCAAGTTAGTGGGATA+AGG + Chr8:27380951-27380970 None:intergenic 50.0%
GATAGCCGACCCAAGTTAGT+GGG + Chr8:27380957-27380976 None:intergenic 50.0%
GCTCACATTATCTCTGGTCC+TGG - Chr8:27379660-27379679 MsG0880043589.01.T01:CDS 50.0%
GCTTCCACTTCTCATGCACT+TGG + Chr8:27377802-27377821 None:intergenic 50.0%
GGCATGCAGTAACTAGGTTG+TGG - Chr8:27380781-27380800 MsG0880043589.01.T01:intron 50.0%
GGCTTGATGAGGAGATGGTT+AGG - Chr8:27378701-27378720 MsG0880043589.01.T01:CDS 50.0%
GGTCTACTCTATGAAGGTCC+TGG - Chr8:27380336-27380355 MsG0880043589.01.T01:intron 50.0%
TAGGGTTTGCCTCGTGGAAA+GGG - Chr8:27379795-27379814 MsG0880043589.01.T01:intron 50.0%
TATAAGGGACACCGCAGACA+AGG + Chr8:27378348-27378367 None:intergenic 50.0%
TATTCACAAGCTGCTGCAGC+CGG + Chr8:27381077-27381096 None:intergenic 50.0%
TCAAAGCTATCGGGTCACTC+AGG - Chr8:27377572-27377591 MsG0880043589.01.T01:intron 50.0%
TCTGGTCCTGGAATTGTGGA+TGG - Chr8:27379672-27379691 MsG0880043589.01.T01:CDS 50.0%
TGCAGCAGTGTAATCTCCCT+TGG + Chr8:27379862-27379881 None:intergenic 50.0%
TGCCGACATCGGTAATACCT+CGG - Chr8:27379489-27379508 MsG0880043589.01.T01:CDS 50.0%
TTAGGGTTTGCCTCGTGGAA+AGG - Chr8:27379794-27379813 MsG0880043589.01.T01:intron 50.0%
TTCTCATGCACTTGGGCACA+TGG + Chr8:27377794-27377813 None:intergenic 50.0%
!! TGGCAAGCCATTTTGGGGAA+GGG - Chr8:27380520-27380539 MsG0880043589.01.T01:intron 50.0%
!! TTGGCAAGCCATTTTGGGGA+AGG - Chr8:27380519-27380538 MsG0880043589.01.T01:intron 50.0%
!! TTTCGGTTCTAAGCTTCGCG+CGG - Chr8:27379191-27379210 MsG0880043589.01.T01:CDS 50.0%
ACCTCGGCCATGCAGTATGA+AGG - Chr8:27379505-27379524 MsG0880043589.01.T01:CDS 55.0%
CAAATGGCGATCGGTGGTGA+TGG - Chr8:27379999-27380018 MsG0880043589.01.T01:intron 55.0%
CAATCCAGCGTCGTGGTCTA+GGG - Chr8:27379935-27379954 MsG0880043589.01.T01:intron 55.0%
CCCCCTCTAACACATAGGAC+TGG + Chr8:27377613-27377632 None:intergenic 55.0%
CCGATCGCCATTTGAACTCC+AGG + Chr8:27379993-27380012 None:intergenic 55.0%
CCTCGGCCATGCAGTATGAA+GGG - Chr8:27379506-27379525 MsG0880043589.01.T01:CDS 55.0%
CCTTGCGGCGCATAACCATA+GGG + Chr8:27378414-27378433 None:intergenic 55.0%
CTCTGTTTGGCTGCGGATGT+TGG - Chr8:27378880-27378899 MsG0880043589.01.T01:intron 55.0%
CTGCGCCGTTGCGTAACATA+GGG - Chr8:27378545-27378564 MsG0880043589.01.T01:intron 55.0%
GGAGTTCAAATGGCGATCGG+TGG - Chr8:27379993-27380012 MsG0880043589.01.T01:intron 55.0%
GTGCCCAAGTGCATGAGAAG+TGG - Chr8:27377795-27377814 MsG0880043589.01.T01:intron 55.0%
TCAATCCAGCGTCGTGGTCT+AGG - Chr8:27379934-27379953 MsG0880043589.01.T01:intron 55.0%
TCAGCCGGTAACCTTGCCAA+GGG - Chr8:27379843-27379862 MsG0880043589.01.T01:intron 55.0%
TCCTTGCGGCGCATAACCAT+AGG + Chr8:27378415-27378434 None:intergenic 55.0%
TTCAGCCGGTAACCTTGCCA+AGG - Chr8:27379842-27379861 MsG0880043589.01.T01:intron 55.0%
! GGCCGAGGTATTACCGATGT+CGG + Chr8:27379494-27379513 None:intergenic 55.0%
!! CGATCGGTGGTGATGGTTTG+GGG - Chr8:27380006-27380025 MsG0880043589.01.T01:intron 55.0%
!! GCAAGCCATTTTGGGGAAGG+GGG - Chr8:27380522-27380541 MsG0880043589.01.T01:intron 55.0%
!! GCGATCGGTGGTGATGGTTT+GGG - Chr8:27380005-27380024 MsG0880043589.01.T01:intron 55.0%
!! GGCAAGCCATTTTGGGGAAG+GGG - Chr8:27380521-27380540 MsG0880043589.01.T01:intron 55.0%
CCCTATGGTTATGCGCCGCA+AGG - Chr8:27378411-27378430 MsG0880043589.01.T01:CDS 60.0%
CCCTTCATACTGCATGGCCG+AGG + Chr8:27379509-27379528 None:intergenic 60.0%
GCTGCGCCGTTGCGTAACAT+AGG - Chr8:27378544-27378563 MsG0880043589.01.T01:intron 60.0%
TCTCGGTCAATCCAGCGTCG+TGG - Chr8:27379928-27379947 MsG0880043589.01.T01:intron 60.0%
!! GGCGATCGGTGGTGATGGTT+TGG - Chr8:27380004-27380023 MsG0880043589.01.T01:intron 60.0%
AGTGCCCTAGACCACGACGC+TGG + Chr8:27379942-27379961 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 27376505 27381372 27376505 ID=MsG0880043589.01;Name=MsG0880043589.01
Chr8 mRNA 27376505 27381372 27376505 ID=MsG0880043589.01.T01;Parent=MsG0880043589.01;Name=MsG0880043589.01.T01;_AED=0.31;_eAED=0.32;_QI=170|0.83|0.85|1|0.83|0.71|7|260|466
Chr8 exon 27376505 27376866 27376505 ID=MsG0880043589.01.T01:exon:8691;Parent=MsG0880043589.01.T01
Chr8 exon 27377807 27378079 27377807 ID=MsG0880043589.01.T01:exon:8690;Parent=MsG0880043589.01.T01
Chr8 exon 27378170 27378257 27378170 ID=MsG0880043589.01.T01:exon:8689;Parent=MsG0880043589.01.T01
Chr8 exon 27378350 27378432 27378350 ID=MsG0880043589.01.T01:exon:8688;Parent=MsG0880043589.01.T01
Chr8 exon 27378665 27378748 27378665 ID=MsG0880043589.01.T01:exon:8687;Parent=MsG0880043589.01.T01
Chr8 exon 27378941 27379752 27378941 ID=MsG0880043589.01.T01:exon:8686;Parent=MsG0880043589.01.T01
Chr8 exon 27381244 27381372 27381244 ID=MsG0880043589.01.T01:exon:8685;Parent=MsG0880043589.01.T01
Chr8 five_prime_UTR 27381244 27381372 27381244 ID=MsG0880043589.01.T01:five_prime_utr;Parent=MsG0880043589.01.T01
Chr8 five_prime_UTR 27379712 27379752 27379712 ID=MsG0880043589.01.T01:five_prime_utr;Parent=MsG0880043589.01.T01
Chr8 CDS 27378941 27379711 27378941 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 CDS 27378665 27378748 27378665 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 CDS 27378350 27378432 27378350 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 CDS 27378170 27378257 27378170 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 CDS 27377807 27378079 27377807 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 CDS 27376765 27376866 27376765 ID=MsG0880043589.01.T01:cds;Parent=MsG0880043589.01.T01
Chr8 three_prime_UTR 27376505 27376764 27376505 ID=MsG0880043589.01.T01:three_prime_utr;Parent=MsG0880043589.01.T01
Gene Sequence

>MsG0880043589.01.T01

ATGGAGTCTTTAGTTCTTAAACTCCATGATATCTCAGCTGTCAAATTTGGAAACTTCAAGCTTAAATCCGGCATCTCCTCACCAATTTACATAGACCTACGCCTTATTATATCTTACCCTTCTGTCCTCCGACAAATTTCTCAAACTATGATTTCCTCTGTCTCCAACACAAAATTCGACCTTGTCTGCGGTGTCCCTTATACTGCCCTACCTATTGCCACTTGTGTATCTGTCACTCACAACATCCCTATGGTTATGCGCCGCAAGGAAATCAAAGACTATGGCACTTCTAAAGCCATTGAAGGGGATTTTAAGCATGGCCAAAGTTGTTTGGTAATTGAGGATTTAGTTACTAGTGGAACATCGGTTTTGGAAACTGCTGCGCCGTTGCGTAACATAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGATAGAGAACAAGGTGGAAGAGAGAATCTGGAGAGTAATGGAATCAAGTTGCATGCAATTCTTAAATTGACTGAAATGGTGAAAATTTTGAAAGAAAAAGGAAGGCTTGATGAGGAGATGGTTAGGGTTGTTATGAGATTCTTAGAGGAAAATCAGAAGGTTGCTGCTTTGGAAAATACAACTAAGTTGAAGAAGGCATTGTCATATTTGGAGAGGGCTAAGTTGTCCAAAAATCCAATGGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAAAGTAATCTCTGTTTGGCTGCGGATGTTGGAACTGCTGCTGAATTGCTTGAAATTGCCGACAAGGTTGGGCGTGAGATATGCTTGCTGAAAACTCATGTGGATATTTTTCCAGATTTTACTCCGGATTTCGGTTCTAAGCTTCGCGCGATTGCAGAAAAACACAACTTCTTAATATTTGAGGATCGTAAGTTTGCCGACATCGGTAATACCTCGGCCATGCAGTATGAAGGAGGGATCTTTCATATATTGGATTGGGCTGATATAGTAAATGCTCACATTATCTCTGGTCCTGGAATTGTGGATGGACTGAAATTAAAGGGTTTGCCTCGTGGAAAGGGTTTGTTGCTACTTGCTGAAATGAGTTCAGCCGGTAACCTTGCCAAGGGAGATTACACTGCTGCAGCAGTGAAAATTGCTGAGGATCATTCTGACTTTGTTATTGGCTTCATCTCGGTCAATCCAGCGTCGTGGTCTAGGGCACTGATAAAGCCTTGTTTCATTCATGCAACTCCTGGAGTTCAAATGGCGATCGGTGGTGATGGTTTGGGGCAGCAATATAATACTCCATATTCTGTAAGTATTGCAACTCCTGTTATCCATGATAGGGGTAGTGACATTATCATAGTCGGACGTGGTATCATCAAAGCAGCAAATCCGGCTGCAGCAGCTTGTGAATACCGTCTTCAAGGATGA
Protein sequence

>MsG0880043589.01.T01

MESLVLKLHDISAVKFGNFKLKSGISSPIYIDLRLIISYPSVLRQISQTMISSVSNTKFDLVCGVPYTALPIATCVSVTHNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLVIEDLVTSGTSVLETAAPLRNIGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILKEKGRLDEEMVRVVMRFLEENQKVAALENTTKLKKALSYLERAKLSKNPMGKRLFEIMAEKESNLCLAADVGTAAELLEIADKVGREICLLKTHVDIFPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTSAMQYEGGIFHILDWADIVNAHIISGPGIVDGLKLKGLPRGKGLLLLAEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWSRALIKPCFIHATPGVQMAIGGDGLGQQYNTPYSVSIATPVIHDRGSDIIIVGRGIIKAANPAAAACEYRLQG*