AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040104.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040104.01.T01 MTR_7g084480 90.204 245 10 2 48 278 39 283 6.11e-158 441
MsG0780040104.01.T01 MTR_7g084480 92.766 235 4 1 57 278 35 269 4.48e-156 436
MsG0780040104.01.T01 MTR_7g084480 93.171 205 1 1 86 277 1 205 9.10e-137 384
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040104.01.T01 AT1G31860 71.064 235 54 2 51 271 46 280 5.92e-120 345
MsG0780040104.01.T01 AT1G31860 70.500 200 45 2 86 271 1 200 2.54e-99 289
MsG0780040104.01.T01 AT1G31860 75.949 158 37 1 51 207 46 203 5.62e-87 259

Find 76 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTCCACCGATTTC+TGG 0.137364 7:-73096046 None:intergenic
CACTGTTGGACGGTGTAAAA+TGG 0.157529 7:+73094904 MsG0780040104.01.T01:CDS
ATGGACATTGATGAAATTAT+TGG 0.223699 7:-73095090 None:intergenic
GTTGGTCCTGTAACCGCATC+TGG 0.276016 7:-73093561 None:intergenic
AAAACGAGAGATTGCACTTC+TGG 0.284409 7:-73093523 None:intergenic
GACCAAAGCTCTTTGATCTA+AGG 0.290168 7:-73092932 None:intergenic
ATTATTGGAGGTCTCTCCTT+TGG 0.330042 7:-73095075 None:intergenic
GTGTGGCAGGTAGGCCCATC+AGG 0.375048 7:-73095279 None:intergenic
CTACTACCTCTGCCTTGCGC+TGG 0.376948 7:-73095507 None:intergenic
ACAGGTTGAAGGAAACAAAT+TGG 0.394156 7:+73095447 MsG0780040104.01.T01:intron
AAGAAAACGGAAAGCCTTCA+TGG 0.412346 7:+73095530 MsG0780040104.01.T01:CDS
TCCCTTAGATCAAAGAGCTT+TGG 0.412826 7:+73092930 MsG0780040104.01.T01:CDS
TCATTGTTCCACCGATTTCT+GGG 0.414624 7:-73096045 None:intergenic
TGTGGCCTTCCGAGAAGATA+TGG 0.431591 7:-73095021 None:intergenic
TAAGAGGCGTTTCAATTCAA+TGG 0.438518 7:+73093460 MsG0780040104.01.T01:CDS
TACTACCTCTGCCTTGCGCT+GGG 0.453376 7:-73095506 None:intergenic
TGTTTCTGCCCCTGTGTGGC+AGG 0.457775 7:-73095292 None:intergenic
TGGTATCTGCTACAGGTTGA+AGG 0.459991 7:+73095436 MsG0780040104.01.T01:intron
CATGGTTCTGTTGGCACTAA+AGG 0.463951 7:+73095941 MsG0780040104.01.T01:CDS
ACCAAAGCTCTTTGATCTAA+GGG 0.470562 7:-73092931 None:intergenic
TGGCTACAACCATATCTTCT+CGG 0.473692 7:+73095012 MsG0780040104.01.T01:CDS
AAGTCGCACAACCCAGAAAT+CGG 0.479737 7:+73096034 MsG0780040104.01.T01:CDS
TCTGCCCCTGTGTGGCAGGT+AGG 0.494555 7:-73095288 None:intergenic
TCTTTCAACAAGTCAAAGAC+TGG 0.497321 7:-73095327 None:intergenic
CAACTTAGATAATATACCTT+GGG 0.500220 7:+73095253 MsG0780040104.01.T01:intron
CTATCATGCCATGGTTCTGT+TGG 0.502158 7:+73095932 MsG0780040104.01.T01:CDS
GGTGTAAAATGGGATGATAA+AGG 0.507922 7:+73094915 MsG0780040104.01.T01:CDS
ACTGTTGGACGGTGTAAAAT+GGG 0.513858 7:+73094905 MsG0780040104.01.T01:CDS
GACATTGATGAAATTATTGG+AGG 0.523136 7:-73095087 None:intergenic
GTCGGTCACGGTCATCGTTG+TGG 0.523921 7:+73095051 MsG0780040104.01.T01:CDS
TGACTTGTTGAAAGAAGAAG+AGG 0.531116 7:+73095335 MsG0780040104.01.T01:CDS
TCTTTCTACTTGCAGAGAAG+AGG 0.537580 7:+73095836 MsG0780040104.01.T01:intron
ATTGCACTTCTGGAAACCTC+TGG 0.541828 7:-73093513 None:intergenic
AAAATGGGATGATAAAGGTT+TGG 0.543571 7:+73094920 MsG0780040104.01.T01:CDS
AATAACCGCTTTGTCCATGA+AGG 0.545592 7:-73095544 None:intergenic
GATGGGCCTACCTGCCACAC+AGG 0.546338 7:+73095282 MsG0780040104.01.T01:CDS
GCAGAGGTAGTAGAAGAAAA+CGG 0.548101 7:+73095517 MsG0780040104.01.T01:CDS
ACAACTTAGATAATATACCT+TGG 0.549394 7:+73095252 MsG0780040104.01.T01:intron
ATGGGCCTACCTGCCACACA+GGG 0.551373 7:+73095283 MsG0780040104.01.T01:CDS
CGGTCATCGTTGTGGACCAA+AGG 0.552026 7:+73095059 MsG0780040104.01.T01:CDS
CACAATCAAGAAAGACATCA+TGG 0.552848 7:-73095109 None:intergenic
ATATACCTTGGGAAACCTGA+TGG 0.557467 7:+73095264 MsG0780040104.01.T01:CDS
GCATCTGGGATAGCCATGGC+TGG 0.559498 7:-73093546 None:intergenic
GTCACGCACTGCTTCAGAGA+TGG 0.565116 7:+73095899 MsG0780040104.01.T01:CDS
TTTACAGTTGCACAGTCAAG+TGG 0.566585 7:+73093434 MsG0780040104.01.T01:intron
CACAGTCAAGTGGCTCTAAG+AGG 0.567636 7:+73093444 MsG0780040104.01.T01:CDS
AATATCCCAGCGCAAGGCAG+AGG 0.568929 7:+73095501 MsG0780040104.01.T01:CDS
AGAAGATATGGTTGTAGCCA+CGG 0.570030 7:-73095009 None:intergenic
TTGGTCCTGTAACCGCATCT+GGG 0.575216 7:-73093560 None:intergenic
TGATGTACTCTATCATGCCA+TGG 0.578899 7:+73095923 MsG0780040104.01.T01:CDS
CACATGCTTCAATCCGCCAG+AGG 0.586849 7:+73093497 MsG0780040104.01.T01:CDS
TATACCTTGGGAAACCTGAT+GGG 0.588739 7:+73095265 MsG0780040104.01.T01:CDS
GTCAACAATATCCCAGCGCA+AGG 0.606963 7:+73095495 MsG0780040104.01.T01:CDS
GGAAGGCCACATTCTATAGT+CGG 0.610737 7:+73095033 MsG0780040104.01.T01:CDS
CAGGTAGACTCACTGTTGGA+CGG 0.614205 7:+73094894 MsG0780040104.01.T01:intron
TACAACCATATCTTCTCGGA+AGG 0.619181 7:+73095016 MsG0780040104.01.T01:CDS
AACCGCATCTGGGATAGCCA+TGG 0.622178 7:-73093550 None:intergenic
GCACTTCTGGAAACCTCTGG+CGG 0.626654 7:-73093510 None:intergenic
CTTTGCAAACAGAGAAGCCG+TGG 0.635061 7:+73094992 MsG0780040104.01.T01:CDS
CCACATTCTATAGTCGGTCA+CGG 0.639280 7:+73095039 MsG0780040104.01.T01:CDS
TAGGCCCATCAGGTTTCCCA+AGG 0.643905 7:-73095269 None:intergenic
TGAAACACTAGAGAATAATG+AGG 0.646491 7:+73095872 MsG0780040104.01.T01:CDS
ATAGCTCAGAATGTTGACAC+AGG 0.647706 7:+73094951 MsG0780040104.01.T01:CDS
AGCCATGGCTATCCCAGATG+CGG 0.651262 7:+73093548 MsG0780040104.01.T01:CDS
TTGTCAGGTAGACTCACTGT+TGG 0.652198 7:+73094890 MsG0780040104.01.T01:intron
TAGCTCAGAATGTTGACACA+GGG 0.653091 7:+73094952 MsG0780040104.01.T01:CDS
CTTTAGTGCCAACAGAACCA+TGG 0.657861 7:-73095940 None:intergenic
ACAGGGGCAATACTGATGCA+AGG 0.659548 7:+73094969 MsG0780040104.01.T01:CDS
AGCATGTTTCTGCCCCTGTG+TGG 0.667419 7:-73095296 None:intergenic
GGATGATAAAGGTTTGGCTG+TGG 0.671785 7:+73094926 MsG0780040104.01.T01:CDS
TCGCACAACCCAGAAATCGG+TGG 0.673876 7:+73096037 MsG0780040104.01.T01:CDS
CCGTGACCGACTATAGAATG+TGG 0.681377 7:-73095039 None:intergenic
GGATTGAAGCATGTGAACGT+TGG 0.704472 7:-73093489 None:intergenic
GAAAGCCTTCATGGACAAAG+CGG 0.708284 7:+73095539 MsG0780040104.01.T01:CDS
AGCTCAGAATGTTGACACAG+GGG 0.720988 7:+73094953 MsG0780040104.01.T01:CDS
TGGGCCTACCTGCCACACAG+GGG 0.738055 7:+73095284 MsG0780040104.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATTAATGTTTCA+TGG - Chr7:73095737-73095756 None:intergenic 10.0%
!! GTTTAAAAAATAAATAAATG+AGG + Chr7:73094035-73094054 MsG0780040104.01.T01:intron 10.0%
!!! GTTATAAAAAACATTTTAAA+TGG - Chr7:73093270-73093289 None:intergenic 10.0%
!! TAAAAATGTAAAAGAATTTG+AGG - Chr7:73094703-73094722 None:intergenic 15.0%
!! TATTATTAACAGCATATTTA+CGG - Chr7:73094732-73094751 None:intergenic 15.0%
!!! AAAATGTTTTTTATAACGTA+AGG + Chr7:73093273-73093292 MsG0780040104.01.T01:intron 15.0%
!!! TAACTAGTTTCTTTTATATT+TGG + Chr7:73093643-73093662 MsG0780040104.01.T01:intron 15.0%
!! AACTAAACAAAACAAAACAA+AGG + Chr7:73093870-73093889 MsG0780040104.01.T01:intron 20.0%
!! AATAACAATATTTCTCAGAT+AGG - Chr7:73094131-73094150 None:intergenic 20.0%
!! AATTGGACAATAAAAAAAGA+TGG - Chr7:73093898-73093917 None:intergenic 20.0%
!! ACTAAACAAAACAAAACAAA+GGG + Chr7:73093871-73093890 MsG0780040104.01.T01:intron 20.0%
!! GTTATTATCACAATTTCAAT+AGG - Chr7:73094614-73094633 None:intergenic 20.0%
!! TATTATCTAAGTTGTTATCA+AGG - Chr7:73095247-73095266 None:intergenic 20.0%
!! TTGTATTTCTTAGTTCAAAT+GGG + Chr7:73094650-73094669 MsG0780040104.01.T01:intron 20.0%
!! TTTGTATTTCTTAGTTCAAA+TGG + Chr7:73094649-73094668 MsG0780040104.01.T01:intron 20.0%
!!! CTCTTGTTTTGAAAAATTAT+TGG + Chr7:73094354-73094373 MsG0780040104.01.T01:intron 20.0%
!!! TGTTATTTTATAGATAGACA+AGG + Chr7:73094144-73094163 MsG0780040104.01.T01:intron 20.0%
!!! TTCTTTTATATTTGGACAAT+TGG + Chr7:73093651-73093670 MsG0780040104.01.T01:intron 20.0%
! AAAAAGTCAATGCAGAAAAA+CGG - Chr7:73095159-73095178 None:intergenic 25.0%
! AAATAAATAAATGAGGAACC+TGG + Chr7:73094042-73094061 MsG0780040104.01.T01:intron 25.0%
! AACATATCAACTGAAAATGA+AGG - Chr7:73093758-73093777 None:intergenic 25.0%
! AAGTCATGCTTATTTGTAAA+TGG + Chr7:73094398-73094417 MsG0780040104.01.T01:intron 25.0%
! ACAACTTAGATAATATACCT+TGG + Chr7:73095252-73095271 MsG0780040104.01.T01:intron 25.0%
! ATATGGTAAAAAAGTTCACA+GGG - Chr7:73093342-73093361 None:intergenic 25.0%
! ATGGACATTGATGAAATTAT+TGG - Chr7:73095093-73095112 None:intergenic 25.0%
! ATTATCAGTATCATGATGAA+TGG - Chr7:73094463-73094482 None:intergenic 25.0%
! CAACTTAGATAATATACCTT+GGG + Chr7:73095253-73095272 MsG0780040104.01.T01:intron 25.0%
! CAGTCAAATTGACAATAAAA+TGG - Chr7:73094302-73094321 None:intergenic 25.0%
! TACAATTATATTCATGAACC+AGG - Chr7:73094063-73094082 None:intergenic 25.0%
! TAGCTTCAATCAATTAAAAC+AGG + Chr7:73095359-73095378 MsG0780040104.01.T01:intron 25.0%
! TGTATTTCTTAGTTCAAATG+GGG + Chr7:73094651-73094670 MsG0780040104.01.T01:intron 25.0%
! TTAATGTGAAACAGAAAACA+AGG - Chr7:73094858-73094877 None:intergenic 25.0%
! TTATCAGTATCATGATGAAT+GGG - Chr7:73094462-73094481 None:intergenic 25.0%
! TTGAACTAAGAAATACAAAC+TGG - Chr7:73094648-73094667 None:intergenic 25.0%
!! ACCATGAAGAATATGATTTT+TGG - Chr7:73095657-73095676 None:intergenic 25.0%
!! CATGAAGAATATGATTTTTG+GGG - Chr7:73095655-73095674 None:intergenic 25.0%
!! CCATGAAGAATATGATTTTT+GGG - Chr7:73095656-73095675 None:intergenic 25.0%
!! TAAAAAGCTAAACTTTTGTC+AGG + Chr7:73094875-73094894 MsG0780040104.01.T01:intron 25.0%
!! TTAAATGACAGTTTTCTTGT+TGG + Chr7:73093956-73093975 MsG0780040104.01.T01:intron 25.0%
!! TTGTTATTCTTTGTATCATG+TGG + Chr7:73095198-73095217 MsG0780040104.01.T01:intron 25.0%
!!! GGAAATGCTTTTTTAAACAA+AGG - Chr7:73095716-73095735 None:intergenic 25.0%
!!! TGTGAACTTTTTTACCATAT+GGG + Chr7:73093342-73093361 MsG0780040104.01.T01:intron 25.0%
AAAAAGACACAAAAGAGAGA+AGG - Chr7:73094823-73094842 None:intergenic 30.0%
AAAATGGGATGATAAAGGTT+TGG + Chr7:73094920-73094939 MsG0780040104.01.T01:CDS 30.0%
AAACCGTACTATATATGTCA+AGG - Chr7:73093997-73094016 None:intergenic 30.0%
AACTAGTTAGATAGTTGACA+TGG - Chr7:73093632-73093651 None:intergenic 30.0%
ACAATCTCATGATTTGATGT+TGG + Chr7:73093159-73093178 MsG0780040104.01.T01:intron 30.0%
AGATGATTGAAGAAAACAGA+TGG + Chr7:73095765-73095784 MsG0780040104.01.T01:intron 30.0%
CAAACCAATTTAAATGTTGC+TGG - Chr7:73095418-73095437 None:intergenic 30.0%
CAGCAACATTTAAATTGGTT+TGG + Chr7:73095416-73095435 MsG0780040104.01.T01:intron 30.0%
CATATGGTAAAAAAGTTCAC+AGG - Chr7:73093343-73093362 None:intergenic 30.0%
CCCAAAAATCATATTCTTCA+TGG + Chr7:73095653-73095672 MsG0780040104.01.T01:intron 30.0%
GACATTGATGAAATTATTGG+AGG - Chr7:73095090-73095109 None:intergenic 30.0%
TAATTGATTGAGAGAGAGAT+AGG + Chr7:73093081-73093100 MsG0780040104.01.T01:intron 30.0%
TATCAGTATCATGATGAATG+GGG - Chr7:73094461-73094480 None:intergenic 30.0%
TCCTATTGTAAGTTATGTAG+TGG + Chr7:73094248-73094267 MsG0780040104.01.T01:intron 30.0%
TGAAACACTAGAGAATAATG+AGG + Chr7:73095872-73095891 MsG0780040104.01.T01:CDS 30.0%
! ATTTGACTGTGTAGAAGTAT+CGG + Chr7:73094313-73094332 MsG0780040104.01.T01:intron 30.0%
! CTATTTCTTCCAGATGTATT+AGG + Chr7:73094216-73094235 MsG0780040104.01.T01:intron 30.0%
! TCATCATGATACTGATAATG+TGG + Chr7:73094464-73094483 MsG0780040104.01.T01:intron 30.0%
! TTTTATAACGTAAGGCCTAT+GGG + Chr7:73093281-73093300 MsG0780040104.01.T01:intron 30.0%
! TTTTTATAACGTAAGGCCTA+TGG + Chr7:73093280-73093299 MsG0780040104.01.T01:intron 30.0%
!!! CTGTGAACTTTTTTACCATA+TGG + Chr7:73093341-73093360 MsG0780040104.01.T01:intron 30.0%
AAAAAGTTCACAGGGACAAA+AGG - Chr7:73093334-73093353 None:intergenic 35.0%
AAGGCAACTTTATAGCAACA+AGG - Chr7:73095697-73095716 None:intergenic 35.0%
AAGGCCAGCAACATTTAAAT+TGG + Chr7:73095411-73095430 MsG0780040104.01.T01:intron 35.0%
AATCCTAGACCTAATACATC+TGG - Chr7:73094228-73094247 None:intergenic 35.0%
ACCAAAGCTCTTTGATCTAA+GGG - Chr7:73092934-73092953 None:intergenic 35.0%
ACTTGATGCCACAAACTAAA+TGG - Chr7:73094680-73094699 None:intergenic 35.0%
AGAGCCCTTGAGAAAATAAA+GGG + Chr7:73093713-73093732 MsG0780040104.01.T01:intron 35.0%
AGGGACAAAAGGTCAATAAA+CGG - Chr7:73093323-73093342 None:intergenic 35.0%
AGTTGACATGGAAATACCTT+GGG - Chr7:73093620-73093639 None:intergenic 35.0%
ATTACAGTGACAACTCCTTA+CGG + Chr7:73093915-73093934 MsG0780040104.01.T01:intron 35.0%
CACAATCAAGAAAGACATCA+TGG - Chr7:73095112-73095131 None:intergenic 35.0%
CGTCCTTGACATATATAGTA+CGG + Chr7:73093991-73094010 MsG0780040104.01.T01:intron 35.0%
GAATGTAACAACAAATGCCA+TGG - Chr7:73094801-73094820 None:intergenic 35.0%
GCCACTACATAACTTACAAT+AGG - Chr7:73094252-73094271 None:intergenic 35.0%
GGTGTAAAATGGGATGATAA+AGG + Chr7:73094915-73094934 MsG0780040104.01.T01:CDS 35.0%
TAACAACTAAAACAGCACCA+AGG - Chr7:73094586-73094605 None:intergenic 35.0%
TAAGGAGTTGTCACTGTAAT+TGG - Chr7:73093915-73093934 None:intergenic 35.0%
TAGTTGACATGGAAATACCT+TGG - Chr7:73093621-73093640 None:intergenic 35.0%
TCAATAAACGGTGTGCATTA+AGG - Chr7:73093311-73093330 None:intergenic 35.0%
TCTTTCAACAAGTCAAAGAC+TGG - Chr7:73095330-73095349 None:intergenic 35.0%
TGATTGCTTATGAAATGCCA+TGG + Chr7:73094781-73094800 MsG0780040104.01.T01:intron 35.0%
TTAGCACGTTATTCAGACAA+CGG + Chr7:73093684-73093703 MsG0780040104.01.T01:intron 35.0%
! ACAGGTTGAAGGAAACAAAT+TGG + Chr7:73095447-73095466 MsG0780040104.01.T01:intron 35.0%
! ATTTTCCAAGTCTGGTATTG+AGG + Chr7:73096004-73096023 MsG0780040104.01.T01:CDS 35.0%
! CAAAGTAGAAGAAGTTTTGC+AGG + Chr7:73095968-73095987 MsG0780040104.01.T01:CDS 35.0%
! CAAGAGCTTTTACAGAATCA+CGG - Chr7:73095136-73095155 None:intergenic 35.0%
!! TAAGAGGCGTTTCAATTCAA+TGG + Chr7:73093460-73093479 MsG0780040104.01.T01:CDS 35.0%
!! TGACTTGTTGAAAGAAGAAG+AGG + Chr7:73095335-73095354 MsG0780040104.01.T01:CDS 35.0%
!! TTTGACTGTGTAGAAGTATC+GGG + Chr7:73094314-73094333 MsG0780040104.01.T01:intron 35.0%
!!! ACGTCCCTTTATTTTCTCAA+GGG - Chr7:73093720-73093739 None:intergenic 35.0%
!!! ACTTGGGTGACATAGTTTTT+TGG + Chr7:73092986-73093005 MsG0780040104.01.T01:intron 35.0%
!!! GATTTTTGGGGTCGAAAAAA+GGG - Chr7:73095643-73095662 None:intergenic 35.0%
!!! TGATTTTTGGGGTCGAAAAA+AGG - Chr7:73095644-73095663 None:intergenic 35.0%
AAAACGAGAGATTGCACTTC+TGG - Chr7:73093526-73093545 None:intergenic 40.0%
AACTCCTTACGGTGACATTT+GGG + Chr7:73093926-73093945 MsG0780040104.01.T01:intron 40.0%
AAGAAAACGGAAAGCCTTCA+TGG + Chr7:73095530-73095549 MsG0780040104.01.T01:CDS 40.0%
AAGGCTCAGAAGATACTAGA+AGG - Chr7:73094567-73094586 None:intergenic 40.0%
AATAACCGCTTTGTCCATGA+AGG - Chr7:73095547-73095566 None:intergenic 40.0%
ACACCAAAGCATGCTAACAT+AGG + Chr7:73094175-73094194 MsG0780040104.01.T01:intron 40.0%
ACCAAAGCATGCTAACATAG+GGG + Chr7:73094177-73094196 MsG0780040104.01.T01:intron 40.0%
ACTGTTGGACGGTGTAAAAT+GGG + Chr7:73094905-73094924 MsG0780040104.01.T01:CDS 40.0%
AGAAGATATGGTTGTAGCCA+CGG - Chr7:73095012-73095031 None:intergenic 40.0%
AGAAGCAAAAGCTAAGTGGT+TGG - Chr7:73093582-73093601 None:intergenic 40.0%
AGATAGGAACGTCTATAAGC+AGG - Chr7:73094115-73094134 None:intergenic 40.0%
AGTTTGATTGACCCATAGAG+TGG + Chr7:73093233-73093252 MsG0780040104.01.T01:intron 40.0%
ATACAAACTGGACTTGCATG+AGG - Chr7:73094636-73094655 None:intergenic 40.0%
ATAGCTCAGAATGTTGACAC+AGG + Chr7:73094951-73094970 MsG0780040104.01.T01:CDS 40.0%
ATATACCTTGGGAAACCTGA+TGG + Chr7:73095264-73095283 MsG0780040104.01.T01:CDS 40.0%
ATTATTGGAGGTCTCTCCTT+TGG - Chr7:73095078-73095097 None:intergenic 40.0%
CACCAAAGCATGCTAACATA+GGG + Chr7:73094176-73094195 MsG0780040104.01.T01:intron 40.0%
CTATGTCACCCAAGTGAAAT+CGG - Chr7:73092981-73093000 None:intergenic 40.0%
CTTCCAGATGTATTAGGTCT+AGG + Chr7:73094222-73094241 MsG0780040104.01.T01:intron 40.0%
GACCAAAGCTCTTTGATCTA+AGG - Chr7:73092935-73092954 None:intergenic 40.0%
GAGAGCCCTTGAGAAAATAA+AGG + Chr7:73093712-73093731 MsG0780040104.01.T01:intron 40.0%
GCAGAGGTAGTAGAAGAAAA+CGG + Chr7:73095517-73095536 MsG0780040104.01.T01:CDS 40.0%
GCATAGAAGCAAAAGCTAAG+TGG - Chr7:73093586-73093605 None:intergenic 40.0%
GTTGACATGGAAATACCTTG+GGG - Chr7:73093619-73093638 None:intergenic 40.0%
GTTTGATTGACCCATAGAGT+GGG + Chr7:73093234-73093253 MsG0780040104.01.T01:intron 40.0%
TACAACCATATCTTCTCGGA+AGG + Chr7:73095016-73095035 MsG0780040104.01.T01:CDS 40.0%
TAGCTCAGAATGTTGACACA+GGG + Chr7:73094952-73094971 MsG0780040104.01.T01:CDS 40.0%
TATACCTTGGGAAACCTGAT+GGG + Chr7:73095265-73095284 MsG0780040104.01.T01:CDS 40.0%
TCCCTTAGATCAAAGAGCTT+TGG + Chr7:73092930-73092949 MsG0780040104.01.T01:CDS 40.0%
TCTTTCTACTTGCAGAGAAG+AGG + Chr7:73095836-73095855 MsG0780040104.01.T01:intron 40.0%
TGAGAAAATAAAGGGACGTG+TGG + Chr7:73093721-73093740 MsG0780040104.01.T01:intron 40.0%
TGATGTACTCTATCATGCCA+TGG + Chr7:73095923-73095942 MsG0780040104.01.T01:CDS 40.0%
TGGCTACAACCATATCTTCT+CGG + Chr7:73095012-73095031 MsG0780040104.01.T01:CDS 40.0%
TTCTAGTATCTTCTGAGCCT+TGG + Chr7:73094566-73094585 MsG0780040104.01.T01:intron 40.0%
TTTACAGTTGCACAGTCAAG+TGG + Chr7:73093434-73093453 MsG0780040104.01.T01:intron 40.0%
! AAGAAGTTTTGCAGGTTCTG+AGG + Chr7:73095976-73095995 MsG0780040104.01.T01:CDS 40.0%
! ATATGGGCTACTGTCAAGAA+GGG + Chr7:73093358-73093377 MsG0780040104.01.T01:intron 40.0%
! ATTTTCTCAAGGGCTCTCAT+TGG - Chr7:73093710-73093729 None:intergenic 40.0%
! CACTTAGGTGACATAGCTTT+TGG - Chr7:73093117-73093136 None:intergenic 40.0%
! CTTTTCCTCAATACCAGACT+TGG - Chr7:73096012-73096031 None:intergenic 40.0%
! GTAGATAGCCGATTTCACTT+GGG + Chr7:73092970-73092989 MsG0780040104.01.T01:intron 40.0%
! TCCTGTTTTCCTGTAGAGAA+AGG + Chr7:73095392-73095411 MsG0780040104.01.T01:intron 40.0%
! TGTAGATAGCCGATTTCACT+TGG + Chr7:73092969-73092988 MsG0780040104.01.T01:intron 40.0%
!! AGTTGCTGTGCTCTAAAATC+AGG + Chr7:73095578-73095597 MsG0780040104.01.T01:intron 40.0%
!! ATTGGTTTGGTATCTGCTAC+AGG + Chr7:73095429-73095448 MsG0780040104.01.T01:intron 40.0%
!! CTGTGCTCTAAAATCAGGTT+GGG + Chr7:73095583-73095602 MsG0780040104.01.T01:intron 40.0%
!! TCATTGTTCCACCGATTTCT+GGG - Chr7:73096048-73096067 None:intergenic 40.0%
!!! CACGTCCCTTTATTTTCTCA+AGG - Chr7:73093721-73093740 None:intergenic 40.0%
AACGTCTATAAGCAGGATGG+TGG - Chr7:73094108-73094127 None:intergenic 45.0%
AAGTCGCACAACCCAGAAAT+CGG + Chr7:73096034-73096053 MsG0780040104.01.T01:CDS 45.0%
AGCTCAGAATGTTGACACAG+GGG + Chr7:73094953-73094972 MsG0780040104.01.T01:CDS 45.0%
AGGAACGTCTATAAGCAGGA+TGG - Chr7:73094111-73094130 None:intergenic 45.0%
CAACTCCTTACGGTGACATT+TGG + Chr7:73093925-73093944 MsG0780040104.01.T01:intron 45.0%
CACTGTTGGACGGTGTAAAA+TGG + Chr7:73094904-73094923 MsG0780040104.01.T01:CDS 45.0%
CCACATTCTATAGTCGGTCA+CGG + Chr7:73095039-73095058 MsG0780040104.01.T01:CDS 45.0%
CTTCTTGACAGTAGCCCATA+TGG - Chr7:73093359-73093378 None:intergenic 45.0%
CTTTAGTGCCAACAGAACCA+TGG - Chr7:73095943-73095962 None:intergenic 45.0%
GAAAGCCTTCATGGACAAAG+CGG + Chr7:73095539-73095558 MsG0780040104.01.T01:CDS 45.0%
GCCTTTCTCTACAGGAAAAC+AGG - Chr7:73095396-73095415 None:intergenic 45.0%
GGAAGGCCACATTCTATAGT+CGG + Chr7:73095033-73095052 MsG0780040104.01.T01:CDS 45.0%
GGATGATAAAGGTTTGGCTG+TGG + Chr7:73094926-73094945 MsG0780040104.01.T01:CDS 45.0%
GGATTGAAGCATGTGAACGT+TGG - Chr7:73093492-73093511 None:intergenic 45.0%
TAAACGGTGTGCATTAAGGC+TGG - Chr7:73093307-73093326 None:intergenic 45.0%
TCCCCTATGTTAGCATGCTT+TGG - Chr7:73094181-73094200 None:intergenic 45.0%
TTGTCAGGTAGACTCACTGT+TGG + Chr7:73094890-73094909 MsG0780040104.01.T01:intron 45.0%
! AATCTCTCGTTTTCCAGCCA+TGG + Chr7:73093533-73093552 MsG0780040104.01.T01:CDS 45.0%
! ATTGCACTTCTGGAAACCTC+TGG - Chr7:73093516-73093535 None:intergenic 45.0%
! CATATGGGCTACTGTCAAGA+AGG + Chr7:73093357-73093376 MsG0780040104.01.T01:intron 45.0%
! CATGGTTCTGTTGGCACTAA+AGG + Chr7:73095941-73095960 MsG0780040104.01.T01:CDS 45.0%
! CTATCATGCCATGGTTCTGT+TGG + Chr7:73095932-73095951 MsG0780040104.01.T01:CDS 45.0%
! TGGTATCTGCTACAGGTTGA+AGG + Chr7:73095436-73095455 MsG0780040104.01.T01:intron 45.0%
!! GCTGTGCTCTAAAATCAGGT+TGG + Chr7:73095582-73095601 MsG0780040104.01.T01:intron 45.0%
!! TGGGGCAACCATTTAGTTTG+TGG + Chr7:73094669-73094688 MsG0780040104.01.T01:intron 45.0%
!!! TTATAAAAAACATTTTAAAT+GGG - Chr7:73093269-73093288 None:intergenic 5.0%
ACAGGGGCAATACTGATGCA+AGG + Chr7:73094969-73094988 MsG0780040104.01.T01:CDS 50.0%
CAAGCCCAAATGTCACCGTA+AGG - Chr7:73093933-73093952 None:intergenic 50.0%
CAGGTAGACTCACTGTTGGA+CGG + Chr7:73094894-73094913 MsG0780040104.01.T01:intron 50.0%
CCGTGACCGACTATAGAATG+TGG - Chr7:73095042-73095061 None:intergenic 50.0%
CTTTGCAAACAGAGAAGCCG+TGG + Chr7:73094992-73095011 MsG0780040104.01.T01:CDS 50.0%
GATTGCCTAGCCCACTCTAT+GGG - Chr7:73093247-73093266 None:intergenic 50.0%
GCTATCCACGAGTAGCACTT+AGG - Chr7:73093132-73093151 None:intergenic 50.0%
GTCAACAATATCCCAGCGCA+AGG + Chr7:73095495-73095514 MsG0780040104.01.T01:CDS 50.0%
TATGCACACATCTGACCCCA+AGG + Chr7:73093601-73093620 MsG0780040104.01.T01:intron 50.0%
TGTGGCCTTCCGAGAAGATA+TGG - Chr7:73095024-73095043 None:intergenic 50.0%
TTGGTCCTGTAACCGCATCT+GGG - Chr7:73093563-73093582 None:intergenic 50.0%
! AGGCAGCGATTTTCCAAGTC+TGG + Chr7:73095996-73096015 MsG0780040104.01.T01:CDS 50.0%
! ATTGACCCATAGAGTGGGCT+AGG + Chr7:73093239-73093258 MsG0780040104.01.T01:intron 50.0%
! GTCTATAAGCAGGATGGTGG+AGG - Chr7:73094105-73094124 None:intergenic 50.0%
! TGTCACCTAAGTGCTACTCG+TGG + Chr7:73093124-73093143 MsG0780040104.01.T01:intron 50.0%
!! CACAGTCAAGTGGCTCTAAG+AGG + Chr7:73093444-73093463 MsG0780040104.01.T01:CDS 50.0%
!! GATGGTGGAGGTCACATGTT+AGG - Chr7:73094093-73094112 None:intergenic 50.0%
!! TGTTGCTGGCCTTTCTCTAC+AGG - Chr7:73095404-73095423 None:intergenic 50.0%
AATATCCCAGCGCAAGGCAG+AGG + Chr7:73095501-73095520 MsG0780040104.01.T01:CDS 55.0%
AGCCATGGCTATCCCAGATG+CGG + Chr7:73093548-73093567 MsG0780040104.01.T01:CDS 55.0%
CACATGCTTCAATCCGCCAG+AGG + Chr7:73093497-73093516 MsG0780040104.01.T01:CDS 55.0%
CGGTCATCGTTGTGGACCAA+AGG + Chr7:73095059-73095078 MsG0780040104.01.T01:CDS 55.0%
GCTATCCCAGATGCGGTTAC+AGG + Chr7:73093555-73093574 MsG0780040104.01.T01:intron 55.0%
GGATTGCCTAGCCCACTCTA+TGG - Chr7:73093248-73093267 None:intergenic 55.0%
GGGTGGCTCAGCTCATATTG+AGG + Chr7:73093378-73093397 MsG0780040104.01.T01:intron 55.0%
GTCACGCACTGCTTCAGAGA+TGG + Chr7:73095899-73095918 MsG0780040104.01.T01:CDS 55.0%
GTTGGTCCTGTAACCGCATC+TGG - Chr7:73093564-73093583 None:intergenic 55.0%
TACTACCTCTGCCTTGCGCT+GGG - Chr7:73095509-73095528 None:intergenic 55.0%
TAGGCCCATCAGGTTTCCCA+AGG - Chr7:73095272-73095291 None:intergenic 55.0%
TCGCACAACCCAGAAATCGG+TGG + Chr7:73096037-73096056 MsG0780040104.01.T01:CDS 55.0%
TGGGCTACTGTCAAGAAGGG+TGG + Chr7:73093361-73093380 MsG0780040104.01.T01:intron 55.0%
! AACCGCATCTGGGATAGCCA+TGG - Chr7:73093553-73093572 None:intergenic 55.0%
! AGCATGTTTCTGCCCCTGTG+TGG - Chr7:73095299-73095318 None:intergenic 55.0%
! GCACTTCTGGAAACCTCTGG+CGG - Chr7:73093513-73093532 None:intergenic 55.0%
! GTGCATTAAGGCTGGCCCAT+AGG - Chr7:73093299-73093318 None:intergenic 55.0%
ATGGGCCTACCTGCCACACA+GGG + Chr7:73095283-73095302 MsG0780040104.01.T01:CDS 60.0%
CTACTACCTCTGCCTTGCGC+TGG - Chr7:73095510-73095529 None:intergenic 60.0%
GTCGGTCACGGTCATCGTTG+TGG + Chr7:73095051-73095070 MsG0780040104.01.T01:CDS 60.0%
! GCATCTGGGATAGCCATGGC+TGG - Chr7:73093549-73093568 None:intergenic 60.0%
! TGTTTCTGCCCCTGTGTGGC+AGG - Chr7:73095295-73095314 None:intergenic 60.0%
GATGGGCCTACCTGCCACAC+AGG + Chr7:73095282-73095301 MsG0780040104.01.T01:CDS 65.0%
GTGTGGCAGGTAGGCCCATC+AGG - Chr7:73095282-73095301 None:intergenic 65.0%
TCTGCCCCTGTGTGGCAGGT+AGG - Chr7:73095291-73095310 None:intergenic 65.0%
TGGGCCTACCTGCCACACAG+GGG + Chr7:73095284-73095303 MsG0780040104.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 73092913 73096067 73092913 ID=MsG0780040104.01;Name=MsG0780040104.01
Chr7 mRNA 73092913 73096067 73092913 ID=MsG0780040104.01.T01;Parent=MsG0780040104.01;Name=MsG0780040104.01.T01;_AED=0.47;_eAED=0.57;_QI=0|0|0|1|1|1|6|0|278
Chr7 exon 73092913 73092951 73092913 ID=MsG0780040104.01.T01:exon:13059;Parent=MsG0780040104.01.T01
Chr7 exon 73093441 73093569 73093441 ID=MsG0780040104.01.T01:exon:13060;Parent=MsG0780040104.01.T01
Chr7 exon 73094897 73095142 73094897 ID=MsG0780040104.01.T01:exon:13061;Parent=MsG0780040104.01.T01
Chr7 exon 73095261 73095356 73095261 ID=MsG0780040104.01.T01:exon:13062;Parent=MsG0780040104.01.T01
Chr7 exon 73095451 73095560 73095451 ID=MsG0780040104.01.T01:exon:13063;Parent=MsG0780040104.01.T01
Chr7 exon 73095851 73096067 73095851 ID=MsG0780040104.01.T01:exon:13064;Parent=MsG0780040104.01.T01
Chr7 CDS 73092913 73092951 73092913 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Chr7 CDS 73093441 73093569 73093441 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Chr7 CDS 73094897 73095142 73094897 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Chr7 CDS 73095261 73095356 73095261 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Chr7 CDS 73095451 73095560 73095451 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Chr7 CDS 73095851 73096067 73095851 ID=MsG0780040104.01.T01:cds;Parent=MsG0780040104.01.T01
Gene Sequence

>MsG0780040104.01.T01

ATGAAATTCGTATGCTGTCCCTTAGATCAAAGAGCTTTGTTGCACAGTCAAGTGGCTCTAAGAGGCGTTTCAATTCAATGGCTATTTCCAACGTTCACATGCTTCAATCCGCCAGAGGTTTCCAGAAGTGCAATCTCTCGTTTTCCAGCCATGGCTATCCCAGATGCGGTAGACTCACTGTTGGACGGTGTAAAATGGGATGATAAAGGTTTGGCTGTGGCAATAGCTCAGAATGTTGACACAGGGGCAATACTGATGCAAGGCTTTGCAAACAGAGAAGCCGTGGCTACAACCATATCTTCTCGGAAGGCCACATTCTATAGTCGGTCACGGTCATCGTTGTGGACCAAAGGAGAGACCTCCAATAATTTCATCAATGTCCATGATGTCTTTCTTGATTGTGACCGTGATTCTATAATATACCTTGGGAAACCTGATGGGCCTACCTGCCACACAGGGGCAGAAACATGCTACTATACACCAGTCTTTGACTTGTTGAAAGAAGAAGAGGTTGAAGGAAACAAATTGGCATTGACATCTCTGTATGCATTAGAGTCAACAATATCCCAGCGCAAGGCAGAGGTAGTAGAAGAAAACGGAAAGCCTTCATGGACAAAGCGAGAAGAGGCAAATGAGTTGTGTGAAACACTAGAGAATAATGAGGACAAGTCACGCACTGCTTCAGAGATGGCTGATGTACTCTATCATGCCATGGTTCTGTTGGCACTAAAGGATGTCAAAGTAGAAGAAGTTTTGCAGGTTCTGAGGCAGCGATTTTCCAAGTCTGGTATTGAGGAAAAGAGAAGTCGCACAACCCAGAAATCGGTGGAACAATGA
Protein sequence

>MsG0780040104.01.T01

MKFVCCPLDQRALLHSQVALRGVSIQWLFPTFTCFNPPEVSRSAISRFPAMAIPDAVDSLLDGVKWDDKGLAVAIAQNVDTGAILMQGFANREAVATTISSRKATFYSRSRSSLWTKGETSNNFINVHDVFLDCDRDSIIYLGKPDGPTCHTGAETCYYTPVFDLLKEEEVEGNKLALTSLYALESTISQRKAEVVEENGKPSWTKREEANELCETLENNEDKSRTASEMADVLYHAMVLLALKDVKVEEVLQVLRQRFSKSGIEEKRSRTTQKSVEQ*