AlfalfaGEDB | MsG0880043802.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043802.01

KEGG: -
GO: -
PFAM: PF07734

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043802.01.T01	PNY06113.1	51.014	345	129	6	1	306	51	394	9.56E-96	298

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043802.01.T01	Q8GXC7	24.891	229	148	10	61	280	178	391	3.92E-12	69.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043802.01.T01	A0A2K3NSW3	51.014	345	129	6	1	306	51	394	4.57e-96	298

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0080048487.01	MsG0880043802.01	PPI
MsG0180000330.01	MsG0880043802.01	PPI
MsG0180000837.01	MsG0880043802.01	PPI
MsG0180001056.01	MsG0880043802.01	PPI
MsG0180002191.01	MsG0880043802.01	PPI
MsG0180002194.01	MsG0880043802.01	PPI
MsG0180002493.01	MsG0880043802.01	PPI
MsG0180002949.01	MsG0880043802.01	PPI
MsG0180003919.01	MsG0880043802.01	PPI
MsG0180006148.01	MsG0880043802.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043802.01.T01	MTR_5g037680	44.220	346	140	11	1	303	45	380	2.13e-76	241
MsG0880043802.01.T01	MTR_5g059430	40.054	367	149	13	1	304	63	421	7.19e-72	228
MsG0880043802.01.T01	MTR_5g069390	41.525	354	157	12	1	306	63	414	3.06e-71	228
MsG0880043802.01.T01	MTR_6g086825	40.000	360	151	13	1	305	107	456	7.57e-71	226
MsG0880043802.01.T01	MTR_0129s0070	40.698	344	162	11	1	306	54	393	1.19e-69	222
MsG0880043802.01.T01	MTR_5g097330	39.045	356	157	11	1	305	53	399	3.39e-68	218
MsG0880043802.01.T01	MTR_5g096910	45.161	310	126	11	33	306	89	390	4.84e-68	217
MsG0880043802.01.T01	MTR_2g038680	40.771	363	151	13	1	306	53	408	2.05e-67	216
MsG0880043802.01.T01	MTR_8g012090	43.871	310	116	10	1	280	53	334	2.82e-67	213
MsG0880043802.01.T01	MTR_0129s0120	40.816	343	161	11	1	305	54	392	4.44e-67	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043802.01.T01	AT3G06240	24.891	229	148	10	61	280	178	391	4.00e-13	69.7
MsG0880043802.01.T01	AT4G12560	22.388	268	168	11	65	303	108	364	1.07e-12	68.6
MsG0880043802.01.T01	AT4G12560	22.388	268	168	11	65	303	108	364	1.07e-12	68.6
MsG0880043802.01.T01	AT4G12560	22.388	268	168	11	65	303	108	364	1.07e-12	68.6

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Find 54 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCGGTGTAATGGAATCA+TGG	0.530502	8:-30935788	MsG0880043802.01.T01:CDS
AAGATGACTTTATGGTGATT+CGG	0.449172	8:-30936172	MsG0880043802.01.T01:CDS
AATTATCTTGTTTGTTATGA+CGG	0.444388	8:-30936200	MsG0880043802.01.T01:CDS
ACATATCATGATAATAAGAA+TGG	0.556921	8:+30936563	None:intergenic
ACATGGATGGGATGTCTCAT+TGG	0.500107	8:-30936013	MsG0880043802.01.T01:CDS
ACTGAAGAAGTGCACATGGA+TGG	0.532324	8:-30936026	MsG0880043802.01.T01:CDS
AGAAACTTAATGATATTGAA+TGG	0.450606	8:-30935873	MsG0880043802.01.T01:CDS
AGAACCATCATCAATGTCAG+AGG	0.618203	8:+30935914	None:intergenic
AGAATAGAGTTAAATTAGAT+TGG	0.362567	8:-30936474	MsG0880043802.01.T01:CDS
AGGAATTGTCTTGAGTTCAT+TGG	0.465114	8:+30936271	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGACGGTGAAATATGT+TGG	-	Chr8:30936502-30936521	MsG0880043802.01.T01:CDS	30.0%
AAGATGACTTTATGGTGATT+CGG	-	Chr8:30936013-30936032	MsG0880043802.01.T01:CDS	30.0%
ACCCAAAATTTCAAAACAAG+AGG	+	Chr8:30935813-30935832	None:intergenic	30.0%
CCTTTGATAAGAAGTTATTG+CGG	+	Chr8:30935601-30935620	None:intergenic	30.0%
GCTTTCTATATGGAATAGTA+CGG	+	Chr8:30936583-30936602	None:intergenic	30.0%
GGTTTCAACAATAAAGAGTT+TGG	+	Chr8:30936424-30936443	None:intergenic	30.0%
TCTGCATTCTTACTACTATA+TGG	-	Chr8:30935859-30935878	MsG0880043802.01.T01:CDS	30.0%
TTGGAAGAATGCTTTCTATA+TGG	+	Chr8:30936593-30936612	None:intergenic	30.0%
ACACAAAAATCAGGAATGGA+AGG	+	Chr8:30935937-30935956	None:intergenic	35.0%
AGGAATTGTCTTGAGTTCAT+TGG	+	Chr8:30935917-30935936	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	30935587	30936620	30935587	ID=MsG0880043802.01;Name=MsG0880043802.01
Chr8	mRNA	30935587	30936620	30935587	ID=MsG0880043802.01.T01;Parent=MsG0880043802.01;Name=MsG0880043802.01.T01;_AED=0.33;_eAED=0.33;_QI=0\|0\|0\|1\|1\|1\|2\|0\|306
Chr8	exon	30936468	30936620	30936468	ID=MsG0880043802.01.T01:exon:9279;Parent=MsG0880043802.01.T01
Chr8	exon	30935587	30936354	30935587	ID=MsG0880043802.01.T01:exon:9278;Parent=MsG0880043802.01.T01
Chr8	CDS	30936468	30936620	30936468	ID=MsG0880043802.01.T01:cds;Parent=MsG0880043802.01.T01
Chr8	CDS	30935587	30936354	30935587	ID=MsG0880043802.01.T01:cds;Parent=MsG0880043802.01.T01

Gene Sequence

>MsG0880043802.01.T01

ATGACTATGCACCGCAATAACTTCTTATCAAAGGACCATTCTTATTATCATGATATGTCTCTTCTCCTAAATCTGACAAGACGTCAAGAACATGTTTTGTATTTACTTTTTGGGGAAAGGTTTGAGAATAGAGTTAAATTAGATTGGCCAAAAGCTTTGTCTGCATTCTTACTACTATATGGAATTGGGAAACTTACCTTGTGGAATCCAACTACCAATGAACTCAAGACAATTCCTTCCATTCCTGATTTTTGTGTACCTCATCAGTCGTATGTTAATCACATTAATTATCTTGTTTGTTATGACGGCGTTAAAGATGACTTTATGGTGATTCGGTTCACAACTTGCAGACCATTTGATGATCCTCACTCAAGTGTTTCATTCTGGGTGATATATAGCCTACGCAAAAACTCTTGGAGAAAAATTGACATGGATCATATGCCTCCAACTTATACCGAAACTGAAGAAGTGCACATGGATGGGATGTCTCATTGGTTGGATCAAAGAAGTACATATATATTTTTGCTGTCATTTGACTTCAGCAATGAATCTTTCATTACAACAGCTATACCCTCTGACATTGATGATGGTTCTAATAATATTTTAGTATGGAGAAACTTAATGATATTGAATGGGTCTATTGCTTTCATCTCAAATTATGAAGAGACATCTACATATCACATTTCAATTTTGGGTGAACCCGGTGTAATGGAATCATGGACCAAACTCTTTATTGTTGAAACCTTCCCTTGCCTTGAGAATCCTATTGGAGTGGGGAAGAATGGAAATATACTATTTAGAAAAAAAGACGGTGAAATATGTTGGTATAACTTAAGTAGCAGGATGATTGACGAGATTATTGTTAGAGCAGAGAGTTGTTCCGTACTATTCCATATAGAAAGCATTCTTCCAATTGGATGA

Protein sequence

>MsG0880043802.01.T01

MTMHRNNFLSKDHSYYHDMSLLLNLTRRQEHVLYLLFGERFENRVKLDWPKALSAFLLLYGIGKLTLWNPTTNELKTIPSIPDFCVPHQSYVNHINYLVCYDGVKDDFMVIRFTTCRPFDDPHSSVSFWVIYSLRKNSWRKIDMDHMPPTYTETEEVHMDGMSHWLDQRSTYIFLLSFDFSNESFITTAIPSDIDDGSNNILVWRNLMILNGSIAFISNYEETSTYHISILGEPGVMESWTKLFIVETFPCLENPIGVGKNGNILFRKKDGEICWYNLSSRMIDEIIVRAESCSVLFHIESILPIG*