AlfalfaGEDB | MsG0880044669.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044669.01

KEGG: -
GO: GO:0004672 GO:0004674 GO:0005524 GO:0006468 GO:0048544
PFAM: PF00069 PF00954 PF01453 PF07714 PF08276 PF11883

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044669.01.T01	XP_013445634.1	92.112	824	36	1	1	795	1	824	0	1504

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044669.01.T01	O81905	45.868	835	381	13	23	795	25	850	0	712

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044669.01.T01	A0A072U1H2	92.112	824	36	1	1	795	1	824	0.0	1504

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048302.01	MsG0880044669.01	0.805516	1.285610e-49	6.814907e-47
MsG0080048345.01	MsG0880044669.01	0.822109	2.824128e-53	2.341634e-50
MsG0080048967.01	MsG0880044669.01	0.804589	2.009482e-49	1.040119e-46
MsG0180000019.01	MsG0880044669.01	0.839880	1.216083e-57	1.702369e-54
MsG0180000222.01	MsG0880044669.01	0.820640	6.163296e-53	4.903662e-50
MsG0180000887.01	MsG0880044669.01	0.801893	7.262335e-49	3.508571e-46
MsG0180001050.01	MsG0880044669.01	0.891699	3.129884e-74	2.774124e-70
MsG0180001053.01	MsG0880044669.01	0.845008	5.307905e-59	8.725086e-56
MsG0180003130.01	MsG0880044669.01	0.870790	1.118244e-66	4.405202e-63
MsG0180003240.01	MsG0880044669.01	0.852360	4.858655e-61	1.012705e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880044669.01.T01	MTR_8g465990	92.112	824	36	1	1	795	1	824	1504
MsG0880044669.01.T01	MTR_8g465990	87.985	824	32	2	1	795	1	786	1444
MsG0880044669.01.T01	MTR_8g465990	95.447	593	27	0	1	593	1	593	1119
MsG0880044669.01.T01	MTR_4g081675	56.766	835	307	13	3	795	1	823	895
MsG0880044669.01.T01	MTR_4g081685	56.631	837	308	13	1	795	1	824	892
MsG0880044669.01.T01	MTR_4g081655	56.581	813	298	11	25	795	22	821	889
MsG0880044669.01.T01	MTR_4g081650	57.160	810	290	9	28	795	23	817	875
MsG0880044669.01.T01	MTR_4g081640	54.002	837	285	13	3	795	1	781	862
MsG0880044669.01.T01	MTR_4g081665	56.910	796	290	8	38	795	35	815	861
MsG0880044669.01.T01	MTR_0090s0020	49.199	811	373	7	16	795	13	815	787

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880044669.01.T01	AT4G27290	46.265	830	397	12	9	795	6	829	723
MsG0880044669.01.T01	AT4G21380	45.868	835	381	13	23	795	25	850	712
MsG0880044669.01.T01	AT4G27290	45.763	826	361	11	9	795	6	783	704
MsG0880044669.01.T01	AT1G65790	43.285	834	399	15	23	795	23	843	649
MsG0880044669.01.T01	AT1G65800	43.353	835	401	16	23	795	23	847	647
MsG0880044669.01.T01	AT1G11340	42.978	826	407	18	25	795	17	833	632
MsG0880044669.01.T01	AT1G11410	42.359	831	408	16	28	795	23	845	630
MsG0880044669.01.T01	AT1G11410	42.359	831	408	16	28	795	30	852	630
MsG0880044669.01.T01	AT1G11410	42.201	827	407	16	32	795	3	821	627
MsG0880044669.01.T01	AT1G11300	43.571	840	389	23	12	795	10	820	620

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Find 165 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACTTACATAAGTGACA+AGG	0.722114	8:+47067390	None:intergenic
AAATCTGATGTATTCAGTTT+TGG	0.316712	8:-47067482	MsG0880044669.01.T01:CDS
AACAAAGAGACGAAGTAGTT+TGG	0.368568	8:-47070535	MsG0880044669.01.T01:CDS
AACATAACAGGAGAAGGCAG+TGG	0.614023	8:-47069672	MsG0880044669.01.T01:CDS
AACCCGAAAATATCAGATTT+TGG	0.168010	8:-47067698	MsG0880044669.01.T01:CDS
AACTCGTCTGATTGGTCTCA+AGG	0.528871	8:-47069870	MsG0880044669.01.T01:CDS
AACTTTGAAGAGAGACATAA+TGG	0.332989	8:-47069433	MsG0880044669.01.T01:intron
AAGAACAAGATTGGTGAAGG+CGG	0.655802	8:-47068327	MsG0880044669.01.T01:CDS
AAGAATGGAATTGAATCAAA+CGG	0.500170	8:-47070075	MsG0880044669.01.T01:CDS
AAGAGGCTTTCAAGTGACTC+TGG	0.504905	8:-47068158	MsG0880044669.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCGCTTTAACATTATTTG+TGG	-	Chr8:47070045-47070064	MsG0880044669.01.T01:CDS	30.0%
AATTCTAACATAACAGGAGA+AGG	-	Chr8:47068185-47068204	MsG0880044669.01.T01:CDS	30.0%
AGAAATCTTGTTAAGCTTCT+TGG	-	Chr8:47069783-47069802	MsG0880044669.01.T01:CDS	30.0%
AGCCTCAAATGTATTTAGTT+TGG	+	Chr8:47068749-47068768	None:intergenic	30.0%
ATAAAGAACAAGATTGGTGA+AGG	-	Chr8:47069533-47069552	MsG0880044669.01.T01:intron	30.0%
ATTAGGGAGTTTGAAAATGA+TGG	-	Chr8:47068245-47068264	MsG0880044669.01.T01:intron	30.0%
ATTCCAACAAAAGTTACTTG+GGG	-	Chr8:47067187-47067206	MsG0880044669.01.T01:CDS	30.0%
CAAAATCATCAAATTCAGCT+AGG	+	Chr8:47070269-47070288	None:intergenic	30.0%
CAAGGTGAAAAATTTGTACT+TGG	-	Chr8:47067147-47067166	MsG0880044669.01.T01:CDS	30.0%
CAAGTTATTATCGATACGTA+TGG	-	Chr8:47067814-47067833	MsG0880044669.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	47067015	47070870	47067015	ID=MsG0880044669.01;Name=MsG0880044669.01
Chr8	mRNA	47067015	47070870	47067015	ID=MsG0880044669.01.T01;Parent=MsG0880044669.01;Name=MsG0880044669.01.T01;_AED=0.30;_eAED=0.30;_QI=0\|0\|0\|1\|1\|1\|7\|0\|795
Chr8	exon	47069574	47070870	47069574	ID=MsG0880044669.01.T01:exon:19218;Parent=MsG0880044669.01.T01
Chr8	exon	47069332	47069445	47069332	ID=MsG0880044669.01.T01:exon:19217;Parent=MsG0880044669.01.T01
Chr8	exon	47068308	47068465	47068308	ID=MsG0880044669.01.T01:exon:19216;Parent=MsG0880044669.01.T01
Chr8	exon	47068003	47068213	47068003	ID=MsG0880044669.01.T01:exon:19215;Parent=MsG0880044669.01.T01
Chr8	exon	47067635	47067785	47067635	ID=MsG0880044669.01.T01:exon:19214;Parent=MsG0880044669.01.T01
Chr8	exon	47067400	47067550	47067400	ID=MsG0880044669.01.T01:exon:19213;Parent=MsG0880044669.01.T01
Chr8	exon	47067015	47067320	47067015	ID=MsG0880044669.01.T01:exon:19212;Parent=MsG0880044669.01.T01
Chr8	CDS	47069574	47070870	47069574	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47069332	47069445	47069332	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47068308	47068465	47068308	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47068003	47068213	47068003	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47067635	47067785	47067635	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47067400	47067550	47067400	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01
Chr8	CDS	47067015	47067320	47067015	ID=MsG0880044669.01.T01:cds;Parent=MsG0880044669.01.T01

Gene Sequence

>MsG0880044669.01.T01

ATGAATATTGATACTATTTCCTTCTTGATAAATCTTACATGTATACTTCTTCTACCTTACCTCAAATTTTCCATAGCAGTAGATACTCTTAGTATCTCCCAATCCTTCACTAATGGCATGACCTTGGTTTCACAAGGTGAAAAATTTGTACTTGGTTTCTTCAGTCCTATGAATTCCAACAAAAGTTACTTGGGGATTTGGTATAAGAATATTCCAGTACAAACAGTTGTTTGGGTTGCAAATGGTGTCAAACCCATCAATGATTCCTCCTCCGGAATCCTAACACTAAACAACACTGGCAACCTTGTCCTTAAACAAAGAGACGAAGTAGTTTGGTATACAACATCTCAACAAGATTCCGTGAATCCAGTTGCACAACTTTTGGATTCAGGGAATCTTGTGATACGAGACGAGAAGGAAACAAACCCAGAAGTCTATTTGTGGCAGAGTTTTGATTACCCTTCTGATACAATACTTCCGGGGATGAAGTTAGGTTGGAATCTTAGAACTCGTACGGAAAGGAGAATGACGTCTTGGAAAAGTCCTGACGATCCATCACCAGGAGACTTATATTGGGGTTCGTTACTTTATAATTATCCTGAACAATATCTTATGAAAGGAACAAAGAAATTTGTTAGAATTGGACCATGGAATGGATTGCACTTTAGTGGTGTACCAGATCAAAAGCCTAACAATGTTTACGCTTACAATTTTGTGTCTAATAAGGATGAGATATACTATACATACAGTATGTTGAACGATTCTGTAATATCAAGAATGGAATTGAATCAAACGGATTCAAGTTATTATCGATACGTATGGTCCGAAGATCAACAAAGTTGGAACGTTATGAAATCACTACCAAAAGACAGGTGTGACTATTATAGAAAATGTGGAGTCTACGGCACTTGCACAATCACAGGCTCACTATTATGTGAATGCTTATCAGGGTTTAGCCCTAGGTCTCCAGCTGCTTGGAACTCGTCTGATTGGTCTCAAGGATGTGTCCGAAATAAACCGTTAAATTGTACTAACAAACTCAGTGATGGATTTTTGAAAGTGAAAGGTCTGAAAGTTCCAGATTGTACACATACTTGGGTAGATCAAACAATAGGTCTAAATGAATGTAGACTGAAATGCTTGAATAATTGTTCTTGTACGGCTTATACTAATTCTAACATAACAGGAGAAGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTAATTGATATTAGGGAGTTTGAAAATGATGGTCAGGATCTATATATTCGAATGGATGCTTCAGAATTAGGCAAAGAGAGACATAATGGGCTGAAGAAGGATCTGATAAGCATTCTTGCTAGCATCATTATAGCATCTGGGATGCTATTTTTTGGATATCGTCTCTACATACTGTGGCACAGAATAACTGAGGATTCAGAAATTATTGAACTAGAAGGTGGCAGAGGTAGTGAAGATGAGGATGATCTCGATCTCCCACTGCTTACATATTCAACCTTAGTTACTGCCACTGATAACTTCTCAATAAAGAACAAGATTGGTGAAGGCGGTTTTGGACCTGTATACAAGGGAAGACTGGCAAGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGTGACTCTGGACAAGGAATTACTGAGTTAAAGAATGAAGTAAAACTTATAGCAAAACTTCAACACAGAAATCTTGTTAAGCTTCTTGGTTGTTGCATCGAGGAAGAACATAGAATGCTAGTTTATGAGTACATGACAAACAATAGCTTAAATTGGTTGATTTTTGATTCGAGACTGAGGATAATTCATAGAGACCTCAAACCAAGCAATGTTTTGCTTGATGACAAGTTGAACCCGAAAATATCAGATTTTGGCATAGCTAGAATTTTTGGATTAGATCAGACTCATGGAAATACAAGCCGAGTTGTTGGAACTTACGGCTACATGGCACCAGAGTATGCTGCAGATGGACTTTTTTCTGTGAAATCTGATGTATTCAGTTTTGGAATTTTGATGTTGGAGATCATATGTGGAAAAAGAAGTCGAGGTTTTTATGTCGAAAACGAATCTCCTAACCTTGTCACTTATGCATGGAGTTTATGGAAAGAGGGAAGGGCTTTAGAACTAATTGACAAAAACATAAAGGATTCTTGTGTTAAATCAGAGGCATTGCGTTGCATTCATATCAGTCTCTTGTGTGTCCAGCAATTTCCAGAGGATAGGCCTGGTATGCCTTCTGTGATTCTAATGCTGGGGAGTGATGGTGAATTTGCTAAGCCGAAAGAGCCTGGTTACTATGTAAACAAGGATTCATTTGCAGAAACTTCCAAGTCAAGTCAAAGTGAAAAGAGCATAACCAATAAGATGACTATCACCTTATTAGAAGCCAGATGA

Protein sequence

>MsG0880044669.01.T01

MNIDTISFLINLTCILLLPYLKFSIAVDTLSISQSFTNGMTLVSQGEKFVLGFFSPMNSNKSYLGIWYKNIPVQTVVWVANGVKPINDSSSGILTLNNTGNLVLKQRDEVVWYTTSQQDSVNPVAQLLDSGNLVIRDEKETNPEVYLWQSFDYPSDTILPGMKLGWNLRTRTERRMTSWKSPDDPSPGDLYWGSLLYNYPEQYLMKGTKKFVRIGPWNGLHFSGVPDQKPNNVYAYNFVSNKDEIYYTYSMLNDSVISRMELNQTDSSYYRYVWSEDQQSWNVMKSLPKDRCDYYRKCGVYGTCTITGSLLCECLSGFSPRSPAAWNSSDWSQGCVRNKPLNCTNKLSDGFLKVKGLKVPDCTHTWVDQTIGLNECRLKCLNNCSCTAYTNSNITGEGSGCVMWFGDLIDIREFENDGQDLYIRMDASELGKERHNGLKKDLISILASIIIASGMLFFGYRLYILWHRITEDSEIIELEGGRGSEDEDDLDLPLLTYSTLVTATDNFSIKNKIGEGGFGPVYKGRLASGQEIAVKRLSSDSGQGITELKNEVKLIAKLQHRNLVKLLGCCIEEEHRMLVYEYMTNNSLNWLIFDSRLRIIHRDLKPSNVLLDDKLNPKISDFGIARIFGLDQTHGNTSRVVGTYGYMAPEYAADGLFSVKSDVFSFGILMLEIICGKRSRGFYVENESPNLVTYAWSLWKEGRALELIDKNIKDSCVKSEALRCIHISLLCVQQFPEDRPGMPSVILMLGSDGEFAKPKEPGYYVNKDSFAETSKSSQSEKSITNKMTITLLEAR*