Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000019.01.T01 | XP_003589562.1 | 91.732 | 254 | 14 | 2 | 1 | 254 | 1 | 247 | 2.09E-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000019.01.T01 | Q9SGS5 | 33.212 | 274 | 120 | 10 | 15 | 250 | 24 | 272 | 2.81E-27 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000019.01.T01 | G7I8D2 | 91.732 | 254 | 14 | 2 | 1 | 254 | 1 | 247 | 9.96e-160 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0180000019.01 | 0.821536 | 3.833056e-53 | 3.126876e-50 |
| MsG0080048348.01 | MsG0180000019.01 | 0.806668 | 7.357586e-50 | 4.016743e-47 |
| MsG0180000019.01 | MsG0180000337.01 | 0.833421 | 5.384998e-56 | 6.198613e-53 |
| MsG0180000019.01 | MsG0180001050.01 | 0.848207 | 7.098152e-60 | 1.292807e-56 |
| MsG0180000019.01 | MsG0180001053.01 | 0.877169 | 7.794447e-69 | 3.881423e-65 |
| MsG0180000019.01 | MsG0180003241.01 | 0.814744 | 1.318113e-51 | 8.917632e-49 |
| MsG0180000019.01 | MsG0180003687.01 | 0.800508 | 1.394435e-48 | 6.504325e-46 |
| MsG0180000019.01 | MsG0180003830.01 | 0.820767 | 5.764185e-53 | 4.602851e-50 |
| MsG0180000019.01 | MsG0180004110.01 | 0.837692 | 4.473526e-57 | 5.857462e-54 |
| MsG0180000019.01 | MsG0180004562.01 | 0.872129 | 4.030845e-67 | 1.667303e-63 |
| MsG0180000019.01 | MsG0180004752.01 | 0.805131 | 1.548248e-49 | 8.126806e-47 |
| MsG0180000019.01 | MsG0180005356.01 | 0.804455 | 2.142408e-49 | 1.105100e-46 |
| MsG0180000019.01 | MsG0180005357.01 | 0.815651 | 8.287807e-52 | 5.747862e-49 |
| MsG0180000019.01 | MsG0180006012.01 | 0.851638 | 7.792589e-61 | 1.587372e-57 |
| MsG0180000019.01 | MsG0180006047.01 | 0.810099 | 1.363903e-50 | 8.148870e-48 |
| MsG0180000019.01 | MsG0280007272.01 | 0.820881 | 5.426202e-53 | 4.346784e-50 |
| MsG0180000019.01 | MsG0280007369.01 | 0.878247 | 3.278054e-69 | 1.699558e-65 |
| MsG0180000019.01 | MsG0280007391.01 | 0.839714 | 1.343064e-57 | 1.870456e-54 |
| MsG0180000019.01 | MsG0280007751.01 | 0.812860 | 3.427454e-51 | 2.203462e-48 |
| MsG0180000019.01 | MsG0280009394.01 | 0.903827 | 2.319843e-79 | 3.490689e-75 |
| MsG0180000019.01 | MsG0280009838.01 | 0.840265 | 9.651690e-58 | 1.367435e-54 |
| MsG0180000019.01 | MsG0280011041.01 | 0.851207 | 1.031549e-60 | 2.072332e-57 |
| MsG0180000019.01 | MsG0280011042.01 | 0.817251 | 3.632750e-52 | 2.631990e-49 |
| MsG0180000019.01 | MsG0280011053.01 | 0.832761 | 7.861185e-56 | 8.871567e-53 |
| MsG0180000019.01 | MsG0280011152.01 | 0.838329 | 3.068343e-57 | 4.095707e-54 |
| MsG0180000019.01 | MsG0280011288.01 | 0.841145 | 5.674429e-58 | 8.261729e-55 |
| MsG0180000019.01 | MsG0280011349.01 | 0.816135 | 6.465428e-52 | 4.543498e-49 |
| MsG0180000019.01 | MsG0280011473.01 | 0.883898 | 3.036450e-71 | 1.961424e-67 |
| MsG0180000019.01 | MsG0380011613.01 | 0.835424 | 1.692123e-56 | 2.068360e-53 |
| MsG0180000019.01 | MsG0380012400.01 | 0.812850 | 3.445224e-51 | 2.214293e-48 |
| MsG0180000019.01 | MsG0380013300.01 | 0.814131 | 1.801185e-51 | 1.198561e-48 |
| MsG0180000019.01 | MsG0380014920.01 | 0.843504 | 1.345510e-58 | 2.109586e-55 |
| MsG0180000019.01 | MsG0380015010.01 | 0.810146 | 1.332839e-50 | 7.972574e-48 |
| MsG0180000019.01 | MsG0380015488.01 | 0.839989 | 1.138747e-57 | 1.599823e-54 |
| MsG0180000019.01 | MsG0380015489.01 | 0.822840 | 1.910279e-53 | 1.617305e-50 |
| MsG0180000019.01 | MsG0380017020.01 | 0.872477 | 3.085680e-67 | 1.293203e-63 |
| MsG0180000019.01 | MsG0380017158.01 | 0.807851 | 4.130239e-50 | 2.325278e-47 |
| MsG0180000019.01 | MsG0480018500.01 | 0.845994 | 2.869074e-59 | 4.868423e-56 |
| MsG0180000019.01 | MsG0480018904.01 | 0.852964 | 3.267566e-61 | 6.947787e-58 |
| MsG0180000019.01 | MsG0480019295.01 | 0.862812 | 3.888509e-64 | 1.153980e-60 |
| MsG0180000019.01 | MsG0480019880.01 | 0.804233 | 2.383584e-49 | 1.222456e-46 |
| MsG0180000019.01 | MsG0480020428.01 | 0.857657 | 1.406216e-62 | 3.496447e-59 |
| MsG0180000019.01 | MsG0480021135.01 | 0.847519 | 1.098965e-59 | 1.958535e-56 |
| MsG0180000019.01 | MsG0480022125.01 | 0.849762 | 2.625033e-60 | 5.029238e-57 |
| MsG0180000019.01 | MsG0480022671.01 | 0.803396 | 3.556079e-49 | 1.785111e-46 |
| MsG0180000019.01 | MsG0480022760.01 | 0.834601 | 2.727810e-56 | 3.253027e-53 |
| MsG0180000019.01 | MsG0480023280.01 | 0.819598 | 1.067775e-52 | 8.253598e-50 |
| MsG0180000019.01 | MsG0480023417.01 | 0.818450 | 1.947743e-52 | 1.458618e-49 |
| MsG0180000019.01 | MsG0480023947.01 | 0.828845 | 7.167837e-55 | 7.208656e-52 |
| MsG0180000019.01 | MsG0580024154.01 | 0.854967 | 8.646126e-62 | 1.965049e-58 |
| MsG0180000019.01 | MsG0580024871.01 | 0.838317 | 3.089054e-57 | 4.121889e-54 |
| MsG0180000019.01 | MsG0580024999.01 | 0.826397 | 2.773929e-54 | 2.598460e-51 |
| MsG0180000019.01 | MsG0580025876.01 | 0.801345 | 9.406553e-49 | 4.481771e-46 |
| MsG0180000019.01 | MsG0580027073.01 | 0.885207 | 9.918622e-72 | 6.747338e-68 |
| MsG0180000019.01 | MsG0580027227.01 | 0.886236 | 4.077241e-72 | 2.888878e-68 |
| MsG0180000019.01 | MsG0580027733.01 | 0.852107 | 5.733829e-61 | 1.185614e-57 |
| MsG0180000019.01 | MsG0580027765.01 | 0.808540 | 2.946024e-50 | 1.688941e-47 |
| MsG0180000019.01 | MsG0580028051.01 | 0.802368 | 5.798434e-49 | 2.835467e-46 |
| MsG0180000019.01 | MsG0580028355.01 | 0.841691 | 4.074590e-58 | 6.033939e-55 |
| MsG0180000019.01 | MsG0580028560.01 | 0.809549 | 1.791347e-50 | 1.054880e-47 |
| MsG0180000019.01 | MsG0580028999.01 | 0.903165 | 4.598965e-79 | 6.723806e-75 |
| MsG0180000019.01 | MsG0580029412.01 | 0.838831 | 2.275871e-57 | 3.084996e-54 |
| MsG0180000019.01 | MsG0580029583.01 | 0.816541 | 5.243971e-52 | 3.726148e-49 |
| MsG0180000019.01 | MsG0580029626.01 | 0.814090 | 1.839134e-51 | 1.222414e-48 |
| MsG0180000019.01 | MsG0580029901.01 | 0.819965 | 8.803117e-53 | 6.874893e-50 |
| MsG0180000019.01 | MsG0580029906.01 | 0.814084 | 1.844481e-51 | 1.225793e-48 |
| MsG0180000019.01 | MsG0580029930.01 | 0.839414 | 1.607357e-57 | 2.218178e-54 |
| MsG0180000019.01 | MsG0680031429.01 | 0.819604 | 1.064157e-52 | 8.226846e-50 |
| MsG0180000019.01 | MsG0680035496.01 | 0.812628 | 3.852706e-51 | 2.461909e-48 |
| MsG0180000019.01 | MsG0680035646.01 | 0.812461 | 4.190475e-51 | 2.666160e-48 |
| MsG0180000019.01 | MsG0780037258.01 | 0.838465 | 2.829790e-57 | 3.793428e-54 |
| MsG0180000019.01 | MsG0780038123.01 | 0.855520 | 5.970035e-62 | 1.382021e-58 |
| MsG0180000019.01 | MsG0780038755.01 | 0.803357 | 3.622930e-49 | 1.816753e-46 |
| MsG0180000019.01 | MsG0780039248.01 | 0.802373 | 5.785187e-49 | 2.829338e-46 |
| MsG0180000019.01 | MsG0780039334.01 | 0.863633 | 2.166199e-64 | 6.612165e-61 |
| MsG0180000019.01 | MsG0780039472.01 | 0.860543 | 1.919370e-63 | 5.265849e-60 |
| MsG0180000019.01 | MsG0780039840.01 | 0.803263 | 3.789844e-49 | 1.895906e-46 |
| MsG0180000019.01 | MsG0780039877.01 | 0.880604 | 4.788827e-70 | 2.717464e-66 |
| MsG0180000019.01 | MsG0780040144.01 | 0.827129 | 1.855106e-54 | 1.774779e-51 |
| MsG0180000019.01 | MsG0780040611.01 | 0.810369 | 1.192800e-50 | 7.176899e-48 |
| MsG0180000019.01 | MsG0780041299.01 | 0.810974 | 8.826631e-51 | 5.397847e-48 |
| MsG0180000019.01 | MsG0780041380.01 | 0.811458 | 6.930866e-51 | 4.292650e-48 |
| MsG0180000019.01 | MsG0780041556.01 | 0.829927 | 3.913566e-55 | 4.062956e-52 |
| MsG0180000019.01 | MsG0780041646.01 | 0.835343 | 1.773773e-56 | 2.163081e-53 |
| MsG0180000019.01 | MsG0880041985.01 | 0.846097 | 2.689331e-59 | 4.578108e-56 |
| MsG0180000019.01 | MsG0880042320.01 | 0.822859 | 1.890867e-53 | 1.601746e-50 |
| MsG0180000019.01 | MsG0880042843.01 | 0.802291 | 6.016086e-49 | 2.936025e-46 |
| MsG0180000019.01 | MsG0880042976.01 | 0.806598 | 7.611733e-50 | 4.148238e-47 |
| MsG0180000019.01 | MsG0880043285.01 | 0.813684 | 2.259722e-51 | 1.485596e-48 |
| MsG0180000019.01 | MsG0880043286.01 | 0.836540 | 8.813656e-57 | 1.114069e-53 |
| MsG0180000019.01 | MsG0880043685.01 | 0.842898 | 1.951594e-58 | 3.001785e-55 |
| MsG0180000019.01 | MsG0880043715.01 | 0.839407 | 1.614287e-57 | 2.227339e-54 |
| MsG0180000019.01 | MsG0880043744.01 | 0.839019 | 2.035155e-57 | 2.774495e-54 |
| MsG0180000019.01 | MsG0880043828.01 | 0.808910 | 2.455259e-50 | 1.421291e-47 |
| MsG0180000019.01 | MsG0880044669.01 | 0.839880 | 1.216083e-57 | 1.702369e-54 |
| MsG0180000019.01 | MsG0880045272.01 | 0.839703 | 1.352014e-57 | 1.882246e-54 |
| MsG0180000019.01 | MsG0880045275.01 | 0.854853 | 9.333038e-62 | 2.113360e-58 |
| MsG0180000019.01 | MsG0880045277.01 | 0.896229 | 4.507584e-76 | 4.833178e-72 |
| MsG0180000019.01 | MsG0880045441.01 | 0.868942 | 4.487632e-66 | 1.653334e-62 |
| MsG0180000019.01 | MsG0880046586.01 | 0.801671 | 8.066867e-49 | 3.875109e-46 |
| MsG0180000019.01 | MsG0880046642.01 | 0.806171 | 9.364103e-50 | 5.048286e-47 |
| MsG0180000019.01 | MsG0880046888.01 | 0.823439 | 1.384004e-53 | 1.191674e-50 |
| MsG0180000019.01 | MsG0880046996.01 | 0.801222 | 9.967120e-49 | 4.734104e-46 |
| MsG0180000019.01 | MsG0880047081.01 | 0.888578 | 5.212220e-73 | 4.061495e-69 |
| MsG0180000019.01 | MsG0880047486.01 | 0.841709 | 4.030629e-58 | 5.972168e-55 |
| MsG0180000019.01 | MsG0880047491.01 | 0.846097 | 2.690817e-59 | 4.580489e-56 |
| MsG0180000019.01 | MsG0880047531.01 | 0.812167 | 4.858363e-51 | 3.066510e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000019.01.T01 | MTR_1g026110 | 91.732 | 254 | 14 | 2 | 1 | 254 | 1 | 247 | 2.53e-163 | 452 |
| MsG0180000019.01.T01 | MTR_3g114750 | 48.485 | 264 | 98 | 11 | 4 | 250 | 2 | 244 | 3.17e-59 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000019.01.T01 | AT1G76070 | 33.212 | 274 | 120 | 10 | 15 | 250 | 24 | 272 | 2.87e-28 | 108 |
| MsG0180000019.01.T01 | AT1G20310 | 34.686 | 271 | 120 | 11 | 1 | 247 | 1 | 238 | 3.60e-27 | 105 |
Find 61 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATCTTTGTTGGGTTT+TGG | 0.236347 | 1:+399997 | None:intergenic |
| TCCCTTTGATCAATTTCTTC+AGG | 0.304197 | 1:+399751 | None:intergenic |
| TTCACCAAAGATTTCTTGTA+TGG | 0.307383 | 1:-400052 | MsG0180000019.01.T01:CDS |
| TCATTGCCACCACCATCTTT+AGG | 0.317528 | 1:+400090 | None:intergenic |
| CCTAAAATAGGTGCAGAAAA+TGG | 0.326900 | 1:+399691 | None:intergenic |
| TTTCCACCAACACCTAAAAT+AGG | 0.335034 | 1:+399679 | None:intergenic |
| CTAAATTTGTGATCTCTTCC+TGG | 0.339147 | 1:+400216 | None:intergenic |
| TTTACCTCCGTATCCACCTT+TGG | 0.375428 | 1:+399955 | None:intergenic |
| GAAAGGAAATCAGATGGTTC+TGG | 0.386986 | 1:-399880 | MsG0180000019.01.T01:CDS |
| CAAGAAATCTTTGGTGAAGT+AGG | 0.393822 | 1:+400057 | None:intergenic |
| CAAGGAATGAGATTAATCTT+TGG | 0.407911 | 1:-399618 | MsG0180000019.01.T01:CDS |
| TTAGGTGTTGGTGGAAATAG+TGG | 0.423953 | 1:-399673 | MsG0180000019.01.T01:CDS |
| TGTCCCATACAAGAAATCTT+TGG | 0.426848 | 1:+400048 | None:intergenic |
| GCCTGAAGAAATTGATCAAA+GGG | 0.432040 | 1:-399752 | MsG0180000019.01.T01:CDS |
| GGAAGTGAAGAGATCTTTGT+TGG | 0.442034 | 1:+399990 | None:intergenic |
| CAAAGATTAATCTCATTCCT+TGG | 0.442885 | 1:+399619 | None:intergenic |
| CAAAACGCTCCTTTCAGTCC+AGG | 0.469371 | 1:-400234 | MsG0180000019.01.T01:CDS |
| AGAAAATAACACAAAGTCAT+GGG | 0.481776 | 1:-400190 | MsG0180000019.01.T01:CDS |
| GGTTCTGGATTTGTTGATGA+AGG | 0.482613 | 1:-399865 | MsG0180000019.01.T01:CDS |
| CACTCCACCAAAGGTGGATA+CGG | 0.483600 | 1:-399962 | MsG0180000019.01.T01:CDS |
| CAAAGGGATTGCTTTACTGA+TGG | 0.491176 | 1:-399736 | MsG0180000019.01.T01:CDS |
| ACCTCCGTATCCACCTTTGG+TGG | 0.491667 | 1:+399958 | None:intergenic |
| CACCGCCGATGGGTGATATG+AGG | 0.497283 | 1:-399831 | MsG0180000019.01.T01:CDS |
| GGATTCAACTGAAGAGGCCT+AGG | 0.502469 | 1:+399574 | None:intergenic |
| ATTTATTTAGCTTTAAGCAC+AGG | 0.503675 | 1:+399553 | None:intergenic |
| AAAACTCATGCTACTGGTAA+GGG | 0.508213 | 1:-400162 | MsG0180000019.01.T01:CDS |
| CGTATCCACCTTTGGTGGAG+TGG | 0.514538 | 1:+399963 | None:intergenic |
| CTGATTTGAAGTTTAAGCCA+AGG | 0.518893 | 1:-399636 | MsG0180000019.01.T01:CDS |
| TGATCTCTTCCTGGACTGAA+AGG | 0.521071 | 1:+400225 | None:intergenic |
| CAGAAAATAACACAAAGTCA+TGG | 0.527453 | 1:-400191 | MsG0180000019.01.T01:CDS |
| AAGAGAAACAAAGTAAGCTA+AGG | 0.530956 | 1:-400290 | MsG0180000019.01.T01:CDS |
| GCTAGAAGAAAACCTAAAGA+TGG | 0.536495 | 1:-400102 | MsG0180000019.01.T01:CDS |
| GAAGTGAAGAGATCTTTGTT+GGG | 0.537217 | 1:+399991 | None:intergenic |
| CACCTTTGGTGGAGTGGACA+CGG | 0.538901 | 1:+399969 | None:intergenic |
| AGCCTGAAGAAATTGATCAA+AGG | 0.541841 | 1:-399753 | MsG0180000019.01.T01:CDS |
| TAAAGAGATCGAAGTTTCAG+AGG | 0.548970 | 1:-399936 | MsG0180000019.01.T01:CDS |
| CGTGTCCACTCCACCAAAGG+TGG | 0.560517 | 1:-399968 | MsG0180000019.01.T01:CDS |
| AACAACAAAGCACCGCCGAT+GGG | 0.567253 | 1:-399841 | MsG0180000019.01.T01:CDS |
| AGCACAGGATTCAACTGAAG+AGG | 0.568748 | 1:+399568 | None:intergenic |
| TCACCAAAGATTTCTTGTAT+GGG | 0.570550 | 1:-400051 | MsG0180000019.01.T01:CDS |
| TTCCGTGTCCACTCCACCAA+AGG | 0.573551 | 1:-399971 | MsG0180000019.01.T01:CDS |
| GTTCTGGATTTGTTGATGAA+GGG | 0.581024 | 1:-399864 | MsG0180000019.01.T01:CDS |
| AGAAAACCTAAAGATGGTGG+TGG | 0.587690 | 1:-400096 | MsG0180000019.01.T01:CDS |
| TATGGAATCATAGTAACCAT+AGG | 0.589627 | 1:+400129 | None:intergenic |
| GAACAACAAAGCACCGCCGA+TGG | 0.591209 | 1:-399842 | MsG0180000019.01.T01:CDS |
| GAGATTTGCAAGTGGACGTG+AGG | 0.598149 | 1:-399809 | MsG0180000019.01.T01:CDS |
| TTTGCGGAAAGGAAATCAGA+TGG | 0.598533 | 1:-399886 | MsG0180000019.01.T01:CDS |
| TTGCTTTACTGATGGAGAGG+AGG | 0.603818 | 1:-399728 | MsG0180000019.01.T01:CDS |
| GGATTGCTTTACTGATGGAG+AGG | 0.611817 | 1:-399731 | MsG0180000019.01.T01:CDS |
| CTAAAGCGAAATTTGCGGAA+AGG | 0.612185 | 1:-399897 | MsG0180000019.01.T01:CDS |
| GAAGAACAATGGCTCCACCT+AGG | 0.627085 | 1:-399591 | MsG0180000019.01.T01:CDS |
| TTCAACTGAAGAGGCCTAGG+TGG | 0.634353 | 1:+399577 | None:intergenic |
| AGAAGAAAACCTAAAGATGG+TGG | 0.634473 | 1:-400099 | MsG0180000019.01.T01:CDS |
| TCTTTGGAAGAGAAGAACAA+TGG | 0.638654 | 1:-399602 | MsG0180000019.01.T01:CDS |
| AATCTCCTCATATCACCCAT+CGG | 0.643282 | 1:+399826 | None:intergenic |
| GAAAATAACACAAAGTCATG+GGG | 0.645047 | 1:-400189 | MsG0180000019.01.T01:CDS |
| AAATAGTGGTACATCTAATG+TGG | 0.671533 | 1:-399659 | MsG0180000019.01.T01:CDS |
| TCCACCAAAGGTGGATACGG+AGG | 0.678054 | 1:-399959 | MsG0180000019.01.T01:CDS |
| CTCCTCATATCACCCATCGG+CGG | 0.680805 | 1:+399829 | None:intergenic |
| GAGGTCTAAAGCGAAATTTG+CGG | 0.681767 | 1:-399902 | MsG0180000019.01.T01:CDS |
| GATATGAGGAGATTTGCAAG+TGG | 0.723470 | 1:-399817 | MsG0180000019.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTAAATTTGATTGGA+AGG | - | Chr1:400067-400086 | MsG0180000019.01.T01:CDS | 20.0% |
| ! | AGAAAATAACACAAAGTCAT+GGG | - | Chr1:399662-399681 | MsG0180000019.01.T01:CDS | 25.0% |
| !!! | AGGCTTTTTCTAAATTTGAT+TGG | - | Chr1:400063-400082 | MsG0180000019.01.T01:CDS | 25.0% |
| AAATAGTGGTACATCTAATG+TGG | - | Chr1:400193-400212 | MsG0180000019.01.T01:CDS | 30.0% | |
| AAGAGAAACAAAGTAAGCTA+AGG | - | Chr1:399562-399581 | MsG0180000019.01.T01:CDS | 30.0% | |
| CAAAGATTAATCTCATTCCT+TGG | + | Chr1:400236-400255 | None:intergenic | 30.0% | |
| CAAGGAATGAGATTAATCTT+TGG | - | Chr1:400234-400253 | MsG0180000019.01.T01:CDS | 30.0% | |
| CAGAAAATAACACAAAGTCA+TGG | - | Chr1:399661-399680 | MsG0180000019.01.T01:CDS | 30.0% | |
| GAAAATAACACAAAGTCATG+GGG | - | Chr1:399663-399682 | MsG0180000019.01.T01:CDS | 30.0% | |
| TATGGAATCATAGTAACCAT+AGG | + | Chr1:399726-399745 | None:intergenic | 30.0% | |
| TCACCAAAGATTTCTTGTAT+GGG | - | Chr1:399801-399820 | MsG0180000019.01.T01:CDS | 30.0% | |
| TTCACCAAAGATTTCTTGTA+TGG | - | Chr1:399800-399819 | MsG0180000019.01.T01:CDS | 30.0% | |
| AAAAACTCATGCTACTGGTA+AGG | - | Chr1:399689-399708 | MsG0180000019.01.T01:CDS | 35.0% | |
| AAAACTCATGCTACTGGTAA+GGG | - | Chr1:399690-399709 | MsG0180000019.01.T01:CDS | 35.0% | |
| AGAAGAAAACCTAAAGATGG+TGG | - | Chr1:399753-399772 | MsG0180000019.01.T01:CDS | 35.0% | |
| AGCCTGAAGAAATTGATCAA+AGG | - | Chr1:400099-400118 | MsG0180000019.01.T01:CDS | 35.0% | |
| CAAGAAATCTTTGGTGAAGT+AGG | + | Chr1:399798-399817 | None:intergenic | 35.0% | |
| CCTAAAATAGGTGCAGAAAA+TGG | + | Chr1:400164-400183 | None:intergenic | 35.0% | |
| CTAAATTTGTGATCTCTTCC+TGG | + | Chr1:399639-399658 | None:intergenic | 35.0% | |
| GAAGTGAAGAGATCTTTGTT+GGG | + | Chr1:399864-399883 | None:intergenic | 35.0% | |
| GCCTGAAGAAATTGATCAAA+GGG | - | Chr1:400100-400119 | MsG0180000019.01.T01:CDS | 35.0% | |
| GCTAGAAGAAAACCTAAAGA+TGG | - | Chr1:399750-399769 | MsG0180000019.01.T01:CDS | 35.0% | |
| TAAAGAGATCGAAGTTTCAG+AGG | - | Chr1:399916-399935 | MsG0180000019.01.T01:CDS | 35.0% | |
| TCCCTTTGATCAATTTCTTC+AGG | + | Chr1:400104-400123 | None:intergenic | 35.0% | |
| TGTCCCATACAAGAAATCTT+TGG | + | Chr1:399807-399826 | None:intergenic | 35.0% | |
| TTTCCACCAACACCTAAAAT+AGG | + | Chr1:400176-400195 | None:intergenic | 35.0% | |
| ! | AAGAGATCTTTGTTGGGTTT+TGG | + | Chr1:399858-399877 | None:intergenic | 35.0% |
| ! | CCATTTTCTGCACCTATTTT+AGG | - | Chr1:400161-400180 | MsG0180000019.01.T01:CDS | 35.0% |
| ! | CTGATTTGAAGTTTAAGCCA+AGG | - | Chr1:400216-400235 | MsG0180000019.01.T01:CDS | 35.0% |
| ! | TCTTTGGAAGAGAAGAACAA+TGG | - | Chr1:400250-400269 | MsG0180000019.01.T01:CDS | 35.0% |
| !! | GTTCTGGATTTGTTGATGAA+GGG | - | Chr1:399988-400007 | MsG0180000019.01.T01:CDS | 35.0% |
| !!! | GGTTTTCTTCTAGCTTCATA+TGG | + | Chr1:399744-399763 | None:intergenic | 35.0% |
| AATCTCCTCATATCACCCAT+CGG | + | Chr1:400029-400048 | None:intergenic | 40.0% | |
| CAAAGGGATTGCTTTACTGA+TGG | - | Chr1:400116-400135 | MsG0180000019.01.T01:CDS | 40.0% | |
| CTAAAGCGAAATTTGCGGAA+AGG | - | Chr1:399955-399974 | MsG0180000019.01.T01:CDS | 40.0% | |
| GAAAGGAAATCAGATGGTTC+TGG | - | Chr1:399972-399991 | MsG0180000019.01.T01:CDS | 40.0% | |
| GATATGAGGAGATTTGCAAG+TGG | - | Chr1:400035-400054 | MsG0180000019.01.T01:CDS | 40.0% | |
| GGAAGTGAAGAGATCTTTGT+TGG | + | Chr1:399865-399884 | None:intergenic | 40.0% | |
| TTTGCGGAAAGGAAATCAGA+TGG | - | Chr1:399966-399985 | MsG0180000019.01.T01:CDS | 40.0% | |
| ! | AGAAAACCTAAAGATGGTGG+TGG | - | Chr1:399756-399775 | MsG0180000019.01.T01:CDS | 40.0% |
| ! | GAGGTCTAAAGCGAAATTTG+CGG | - | Chr1:399950-399969 | MsG0180000019.01.T01:CDS | 40.0% |
| ! | TAAGGGATTTTCTGGACCTA+TGG | - | Chr1:399707-399726 | MsG0180000019.01.T01:CDS | 40.0% |
| !! | GGTTCTGGATTTGTTGATGA+AGG | - | Chr1:399987-400006 | MsG0180000019.01.T01:CDS | 40.0% |
| !! | TCTGCACCTATTTTAGGTGT+TGG | - | Chr1:400167-400186 | MsG0180000019.01.T01:CDS | 40.0% |
| !! | TTAGGTGTTGGTGGAAATAG+TGG | - | Chr1:400179-400198 | MsG0180000019.01.T01:CDS | 40.0% |
| !!! | TTCAGAGGATTTTTTCGCAG+AGG | - | Chr1:399931-399950 | MsG0180000019.01.T01:CDS | 40.0% |
| AGCACAGGATTCAACTGAAG+AGG | + | Chr1:400287-400306 | None:intergenic | 45.0% | |
| GGATTGCTTTACTGATGGAG+AGG | - | Chr1:400121-400140 | MsG0180000019.01.T01:CDS | 45.0% | |
| GGTGCAAAAACTCATGCTAC+TGG | - | Chr1:399684-399703 | MsG0180000019.01.T01:CDS | 45.0% | |
| TCATTGCCACCACCATCTTT+AGG | + | Chr1:399765-399784 | None:intergenic | 45.0% | |
| TGATCTCTTCCTGGACTGAA+AGG | + | Chr1:399630-399649 | None:intergenic | 45.0% | |
| TTGCTTTACTGATGGAGAGG+AGG | - | Chr1:400124-400143 | MsG0180000019.01.T01:CDS | 45.0% | |
| TTTACCTCCGTATCCACCTT+TGG | + | Chr1:399900-399919 | None:intergenic | 45.0% | |
| ! | GCTACTGGTAAGGGATTTTC+TGG | - | Chr1:399699-399718 | MsG0180000019.01.T01:CDS | 45.0% |
| !!! | GCACCTATTTTAGGTGTTGG+TGG | - | Chr1:400170-400189 | MsG0180000019.01.T01:CDS | 45.0% |
| CAAAACGCTCCTTTCAGTCC+AGG | - | Chr1:399618-399637 | MsG0180000019.01.T01:CDS | 50.0% | |
| CACTCCACCAAAGGTGGATA+CGG | - | Chr1:399890-399909 | MsG0180000019.01.T01:CDS | 50.0% | |
| GAAGAACAATGGCTCCACCT+AGG | - | Chr1:400261-400280 | MsG0180000019.01.T01:CDS | 50.0% | |
| GAGATTTGCAAGTGGACGTG+AGG | - | Chr1:400043-400062 | MsG0180000019.01.T01:CDS | 50.0% | |
| GGATTCAACTGAAGAGGCCT+AGG | + | Chr1:400281-400300 | None:intergenic | 50.0% | |
| TTCAACTGAAGAGGCCTAGG+TGG | + | Chr1:400278-400297 | None:intergenic | 50.0% | |
| !! | AACAACAAAGCACCGCCGAT+GGG | - | Chr1:400011-400030 | MsG0180000019.01.T01:CDS | 50.0% |
| ACCTCCGTATCCACCTTTGG+TGG | + | Chr1:399897-399916 | None:intergenic | 55.0% | |
| CACCTTTGGTGGAGTGGACA+CGG | + | Chr1:399886-399905 | None:intergenic | 55.0% | |
| CGTATCCACCTTTGGTGGAG+TGG | + | Chr1:399892-399911 | None:intergenic | 55.0% | |
| CTCCTCATATCACCCATCGG+CGG | + | Chr1:400026-400045 | None:intergenic | 55.0% | |
| TCCACCAAAGGTGGATACGG+AGG | - | Chr1:399893-399912 | MsG0180000019.01.T01:CDS | 55.0% | |
| TTCCGTGTCCACTCCACCAA+AGG | - | Chr1:399881-399900 | MsG0180000019.01.T01:CDS | 55.0% | |
| !! | GAACAACAAAGCACCGCCGA+TGG | - | Chr1:400010-400029 | MsG0180000019.01.T01:CDS | 55.0% |
| CACCGCCGATGGGTGATATG+AGG | - | Chr1:400021-400040 | MsG0180000019.01.T01:CDS | 60.0% | |
| CGTGTCCACTCCACCAAAGG+TGG | - | Chr1:399884-399903 | MsG0180000019.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 399555 | 400319 | 399555 | ID=MsG0180000019.01;Name=MsG0180000019.01 |
| Chr1 | mRNA | 399555 | 400319 | 399555 | ID=MsG0180000019.01.T01;Parent=MsG0180000019.01;Name=MsG0180000019.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|254 |
| Chr1 | exon | 399555 | 400319 | 399555 | ID=MsG0180000019.01.T01:exon:7904;Parent=MsG0180000019.01.T01 |
| Chr1 | CDS | 399555 | 400319 | 399555 | ID=MsG0180000019.01.T01:cds;Parent=MsG0180000019.01.T01 |
| Gene Sequence |
| Protein sequence |
