AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045140.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045140.01.T01 MTR_8g066330 83.706 313 14 1 3 278 56 368 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045140.01.T01 AT5G46850 46.296 216 104 5 66 278 93 299 2.71e-54 178
MsG0880045140.01.T01 AT5G46850 46.296 216 104 5 66 278 90 296 4.60e-54 177
MsG0880045140.01.T01 AT5G46850 46.296 216 104 5 66 278 119 325 6.34e-54 178

Find 47 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATCTTAACATGGAATTA+TGG 0.250061 8:-54856858 None:intergenic
GTTGGCTGTAGTAATGTATT+TGG 0.259385 8:-54857288 None:intergenic
TATTTGGATCAACATCTAAA+TGG 0.285963 8:-54857272 None:intergenic
GGCTACTCGATAGTTGAATT+TGG 0.307122 8:+54857605 MsG0880045140.01.T01:CDS
TCATTTGGTGATTCAGAATC+AGG 0.311868 8:+54854260 MsG0880045140.01.T01:CDS
TGGTCTGTGTGAAGCACTTC+CGG 0.339033 8:+54856831 MsG0880045140.01.T01:CDS
TTGCCTGGAGTTCATTTATA+TGG 0.343508 8:+54854222 MsG0880045140.01.T01:CDS
GTTATTGAAAGATTGCCTTC+TGG 0.349209 8:+54857003 MsG0880045140.01.T01:CDS
TCTGTATCTATTTGTTTGCC+TGG 0.357368 8:+54854207 MsG0880045140.01.T01:CDS
TGTATGATGCTGGTCTTGTT+TGG 0.392415 8:+54857717 MsG0880045140.01.T01:CDS
TCACCAAATGAACAATTTCC+AGG 0.399806 8:-54854248 None:intergenic
ATGTCTCAAGAAGTCACTTC+TGG 0.424065 8:+54856811 MsG0880045140.01.T01:CDS
GCAAGATGTTGTAATTCAAA+TGG 0.425864 8:-54857039 None:intergenic
TCACCTGGAAATTGTTCATT+TGG 0.427525 8:+54854245 MsG0880045140.01.T01:CDS
GTTGTAAGACGTGATCTTGT+TGG 0.444614 8:+54856883 MsG0880045140.01.T01:CDS
GTTATCAACTCTTGTAATTG+TGG 0.457283 8:+54857805 MsG0880045140.01.T01:CDS
TTCAATGATATAGCTGTGTT+TGG 0.462761 8:+54857195 MsG0880045140.01.T01:CDS
TTGCAGCCTCTGAATGAAAG+TGG 0.503544 8:+54857584 MsG0880045140.01.T01:intron
GAGAATACCATCGGGAAGAA+AGG 0.515375 8:+54857739 MsG0880045140.01.T01:CDS
TGACCATATAAATGAACTCC+AGG 0.528958 8:-54854225 None:intergenic
CAGACAAAGACTTCAACTGT+TGG 0.529420 8:-54856951 None:intergenic
CTGCAGCGAAGTAACATATC+CGG 0.531814 8:-54857632 None:intergenic
TGTGTTTGGTGATACAAATC+TGG 0.533992 8:+54857209 MsG0880045140.01.T01:CDS
TAAACAAATATTTACTAACC+TGG 0.542513 8:-54854283 None:intergenic
AACTCTATGCTGAAATCTGT+TGG 0.544041 8:-54857306 None:intergenic
GATTTCAACAGCAGAACGGT+TGG 0.547321 8:-54857250 None:intergenic
GAATGCGCCTTTCTTCCCGA+TGG 0.548620 8:-54857746 None:intergenic
ATTTGATTAATGTAGACATA+CGG 0.551866 8:-54856921 None:intergenic
AAGACCAGCATCATACAGAT+TGG 0.554082 8:-54857711 None:intergenic
GATGCCAATCTGTATGATGC+TGG 0.565021 8:+54857707 MsG0880045140.01.T01:CDS
TCTTGTTTGGAGAATACCAT+CGG 0.572466 8:+54857730 MsG0880045140.01.T01:CDS
GATAGTTGAATTTGGTGCAC+CGG 0.578120 8:+54857613 MsG0880045140.01.T01:CDS
ATGTTGTAATTCAAATGGAT+CGG 0.579658 8:-54857034 None:intergenic
AGTTCATTTATATGGTCACC+TGG 0.580303 8:+54854230 MsG0880045140.01.T01:CDS
TGGTGATTCAGAATCAGGCC+AGG 0.583728 8:+54854265 MsG0880045140.01.T01:CDS
ACTTGGTATCGTGCATGCAA+AGG 0.593468 8:-54857330 None:intergenic
CTTGTTTGGAGAATACCATC+GGG 0.595457 8:+54857731 MsG0880045140.01.T01:CDS
CAAGGCGATAAGAAATGTAA+CGG 0.607957 8:-54857783 None:intergenic
AGACGTGATCTTGTTGGTGA+AGG 0.611322 8:+54856889 MsG0880045140.01.T01:CDS
GAGTAGCCACTTTCATTCAG+AGG 0.621657 8:-54857590 None:intergenic
AATGGATTTCAACAGCAGAA+CGG 0.635365 8:-54857254 None:intergenic
TACAACTGACAATCTTAACA+TGG 0.643691 8:-54856866 None:intergenic
GTTACTTCGCTGCAGCACAA+AGG 0.673717 8:+54857640 MsG0880045140.01.T01:CDS
CAACATCTTGCTCAACGTGG+TGG 0.684782 8:+54857051 MsG0880045140.01.T01:CDS
AATTACAAGAGTTGATAACA+AGG 0.697817 8:-54857801 None:intergenic
GAACGGTTGGACAAGAACGA+AGG 0.718054 8:-54857237 None:intergenic
TTACAACATCTTGCTCAACG+TGG 0.734899 8:+54857048 MsG0880045140.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATATAAAATTGCAAA+CGG - Chr8:54856078-54856097 None:intergenic 10.0%
!! AAATAATAATAATCTATCTT+TGG + Chr8:54855631-54855650 MsG0880045140.01.T01:intron 10.0%
!! AAACATATAACACTAAATAA+TGG - Chr8:54857425-54857444 None:intergenic 15.0%
!! ATTACAAATAAAATAGAAAG+TGG + Chr8:54857099-54857118 MsG0880045140.01.T01:intron 15.0%
!!! GTTATTGATTAGAAAAAATA+TGG - Chr8:54857158-54857177 None:intergenic 15.0%
!! AAATTATCAAGTCTATTAAG+AGG + Chr8:54854658-54854677 MsG0880045140.01.T01:intron 20.0%
!! ATGACAAAAATTAAAACTGT+AGG - Chr8:54856369-54856388 None:intergenic 20.0%
!! ATTATTCAATAAGTTTGAAC+CGG - Chr8:54856642-54856661 None:intergenic 20.0%
!! ATTTGATTAATGTAGACATA+CGG - Chr8:54856924-54856943 None:intergenic 20.0%
!! CTAATTATTTACATAAAGCA+GGG - Chr8:54855808-54855827 None:intergenic 20.0%
!! TAAACAAATATTTACTAACC+TGG - Chr8:54854286-54854305 None:intergenic 20.0%
!! TACATCAAAATCACTTATAA+TGG - Chr8:54855612-54855631 None:intergenic 20.0%
!! TTCAATAGTTAATAGATACA+GGG + Chr8:54855563-54855582 MsG0880045140.01.T01:intron 20.0%
!! TTTAATTAGTTAAGAGATAC+AGG + Chr8:54855526-54855545 MsG0880045140.01.T01:intron 20.0%
!! TTTATTTGTAATCTGAAAAG+CGG - Chr8:54857091-54857110 None:intergenic 20.0%
!!! AATAAAGAGTGTATTATTTC+TGG - Chr8:54854761-54854780 None:intergenic 20.0%
!!! AGATTTTTTATGCTACTATT+AGG - Chr8:54856561-54856580 None:intergenic 20.0%
!!! AGTGAATGTCATTATTTTTT+AGG - Chr8:54854382-54854401 None:intergenic 20.0%
!!! ATATTTTGTTAAATGACTGA+AGG + Chr8:54856091-54856110 MsG0880045140.01.T01:intron 20.0%
!!! GTGAATGTCATTATTTTTTA+GGG - Chr8:54854381-54854400 None:intergenic 20.0%
!!! TATTTTGTTAAATGACTGAA+GGG + Chr8:54856092-54856111 MsG0880045140.01.T01:intron 20.0%
! AAAAAAAATACCAGCTTATG+TGG - Chr8:54856473-54856492 None:intergenic 25.0%
! AAAAGTCACTTATAGTATCA+AGG + Chr8:54855206-54855225 MsG0880045140.01.T01:intron 25.0%
! AAAATCTTTGTGACTTACTA+TGG - Chr8:54855169-54855188 None:intergenic 25.0%
! AAAATTCTTAGTGTGACATT+AGG - Chr8:54855330-54855349 None:intergenic 25.0%
! AAAGAGTAAAGTTAAAGAAG+GGG + Chr8:54854531-54854550 MsG0880045140.01.T01:intron 25.0%
! AAAGTCACTTATAGTATCAA+GGG + Chr8:54855207-54855226 MsG0880045140.01.T01:intron 25.0%
! ACAATCTTAACATGGAATTA+TGG - Chr8:54856861-54856880 None:intergenic 25.0%
! ATCATTTCAGATATGAATAG+AGG + Chr8:54856294-54856313 MsG0880045140.01.T01:intron 25.0%
! ATGTTGTAATTCAAATGGAT+CGG - Chr8:54857037-54857056 None:intergenic 25.0%
! CAAAGAGTAAAGTTAAAGAA+GGG + Chr8:54854530-54854549 MsG0880045140.01.T01:intron 25.0%
! GCTAATTATTTACATAAAGC+AGG - Chr8:54855809-54855828 None:intergenic 25.0%
! GTAGTATAAATTGCAAATAG+AGG - Chr8:54856018-54856037 None:intergenic 25.0%
! GTTCAATAGTTAATAGATAC+AGG + Chr8:54855562-54855581 MsG0880045140.01.T01:intron 25.0%
! TATATAAAATTGCAAACGGA+TGG - Chr8:54856074-54856093 None:intergenic 25.0%
! TATTGTTCCTTTCTAAGTTT+GGG + Chr8:54854310-54854329 MsG0880045140.01.T01:intron 25.0%
! TATTTGGATCAACATCTAAA+TGG - Chr8:54857275-54857294 None:intergenic 25.0%
! TTATATCTTAATGTCACTGT+TGG + Chr8:54857372-54857391 MsG0880045140.01.T01:intron 25.0%
! TTATTTGTAATCTGAAAAGC+GGG - Chr8:54857090-54857109 None:intergenic 25.0%
!! AACCTTTTTATTCTTGAAAC+AGG - Chr8:54857478-54857497 None:intergenic 25.0%
!! AATCATCTTTTGTATAGTGA+GGG - Chr8:54855424-54855443 None:intergenic 25.0%
!! GTAAAGCTCTGTTATTTATA+AGG - Chr8:54855658-54855677 None:intergenic 25.0%
!! TCTTTCATTTTCATTTCAGA+TGG + Chr8:54856663-54856682 MsG0880045140.01.T01:intron 25.0%
!!! AACTTCTAAAATAACAGCAT+AGG + Chr8:54854345-54854364 MsG0880045140.01.T01:intron 25.0%
!!! AATTACAAGAGTTGATAACA+AGG - Chr8:54857804-54857823 None:intergenic 25.0%
!!! ACTTCTAAAATAACAGCATA+GGG + Chr8:54854346-54854365 MsG0880045140.01.T01:intron 25.0%
!!! CTGGTATTTTTTTTTTTCTC+TGG + Chr8:54856479-54856498 MsG0880045140.01.T01:intron 25.0%
!!! GATTTTAGTGTTTGATAAGA+TGG + Chr8:54855183-54855202 MsG0880045140.01.T01:intron 25.0%
!!! GTATTATTTCTGGAAATCAA+AGG - Chr8:54854751-54854770 None:intergenic 25.0%
!!! GTGACATTAGGTTTATTTTT+TGG - Chr8:54855318-54855337 None:intergenic 25.0%
!!! TCATTATTTTTTAGGGCAAT+GGG - Chr8:54854374-54854393 None:intergenic 25.0%
AACAGATACAGTCAATTGAT+AGG - Chr8:54854956-54854975 None:intergenic 30.0%
AAGAGTAAAGTTAAAGAAGG+GGG + Chr8:54854532-54854551 MsG0880045140.01.T01:intron 30.0%
AATGGTTACAGAGAATGTAA+AGG - Chr8:54857407-54857426 None:intergenic 30.0%
AATTTGTAGCGAGAAATTTG+AGG + Chr8:54855395-54855414 MsG0880045140.01.T01:intron 30.0%
ACTAAGAGATCTATATAGGT+AGG - Chr8:54856439-54856458 None:intergenic 30.0%
AGAACACAAAGATTATGCAA+AGG - Chr8:54856536-54856555 None:intergenic 30.0%
ATAGTAATTCAGTGTATAGC+CGG + Chr8:54855679-54855698 MsG0880045140.01.T01:intron 30.0%
ATGGTTACAGAGAATGTAAA+GGG - Chr8:54857406-54857425 None:intergenic 30.0%
ATTCTCATCTATAAGCTAGT+AGG + Chr8:54856255-54856274 MsG0880045140.01.T01:intron 30.0%
ATTGAAGAATGATATGTGTC+AGG + Chr8:54854587-54854606 MsG0880045140.01.T01:intron 30.0%
CAGAACTAAGAGATCTATAT+AGG - Chr8:54856443-54856462 None:intergenic 30.0%
CATTTCAACAAGAAAAACAC+AGG - Chr8:54855083-54855102 None:intergenic 30.0%
CATTTCTGCTATTAGAGATA+GGG - Chr8:54856702-54856721 None:intergenic 30.0%
CCAAAGAGTAAAGTTAAAGA+AGG + Chr8:54854529-54854548 MsG0880045140.01.T01:intron 30.0%
GACTTATTTCAAAATGAGCA+TGG + Chr8:54855102-54855121 MsG0880045140.01.T01:intron 30.0%
GCAAGATGTTGTAATTCAAA+TGG - Chr8:54857042-54857061 None:intergenic 30.0%
GGAAGAAAATAGAGTAGTAA+TGG - Chr8:54854786-54854805 None:intergenic 30.0%
GTATTGTTCCTTTCTAAGTT+TGG + Chr8:54854309-54854328 MsG0880045140.01.T01:intron 30.0%
GTCCTGTTTCAAGAATAAAA+AGG + Chr8:54857473-54857492 MsG0880045140.01.T01:intron 30.0%
GTTATCAACTCTTGTAATTG+TGG + Chr8:54857805-54857824 MsG0880045140.01.T01:CDS 30.0%
TACAACTGACAATCTTAACA+TGG - Chr8:54856869-54856888 None:intergenic 30.0%
TCATTTCTGCTATTAGAGAT+AGG - Chr8:54856703-54856722 None:intergenic 30.0%
TCTCCTCTTATCGTATAAAT+AGG + Chr8:54855971-54855990 MsG0880045140.01.T01:intron 30.0%
TTATCAAGTCTATTAAGAGG+CGG + Chr8:54854661-54854680 MsG0880045140.01.T01:intron 30.0%
TTATGATCAACTCTTGTTAC+CGG - Chr8:54855497-54855516 None:intergenic 30.0%
TTCAATGATATAGCTGTGTT+TGG + Chr8:54857195-54857214 MsG0880045140.01.T01:CDS 30.0%
TTCTCATCTATAAGCTAGTA+GGG + Chr8:54856256-54856275 MsG0880045140.01.T01:intron 30.0%
TTGAAGAATGATATGTGTCA+GGG + Chr8:54854588-54854607 MsG0880045140.01.T01:intron 30.0%
! AACATGGAATTATGGTTTTC+CGG - Chr8:54856853-54856872 None:intergenic 30.0%
! CAATCATCTTTTGTATAGTG+AGG - Chr8:54855425-54855444 None:intergenic 30.0%
! CCTTCTTTAACTTTACTCTT+TGG - Chr8:54854532-54854551 None:intergenic 30.0%
! TACAGAGAAGAATTCTAGTT+TGG - Chr8:54855056-54855075 None:intergenic 30.0%
! TCACACTAAGAATTTTACGA+TGG + Chr8:54855334-54855353 MsG0880045140.01.T01:intron 30.0%
!! AATTCTAGTTTGGCATTCAA+AGG - Chr8:54855046-54855065 None:intergenic 30.0%
!! ATTCTAGTTTGGCATTCAAA+GGG - Chr8:54855045-54855064 None:intergenic 30.0%
!! CATTTACTGTTTCTGTAATC+CGG + Chr8:54854871-54854890 MsG0880045140.01.T01:intron 30.0%
!!! GCTGTTATTTTAGAAGTTTG+TGG - Chr8:54854343-54854362 None:intergenic 30.0%
!!! GTCATTATTTTTTAGGGCAA+TGG - Chr8:54854375-54854394 None:intergenic 30.0%
AACCAATGTGCAATTCACAT+TGG + Chr8:54855131-54855150 MsG0880045140.01.T01:intron 35.0%
AACTCTATGCTGAAATCTGT+TGG - Chr8:54857309-54857328 None:intergenic 35.0%
AAGGACTAACATGTTAAAGC+AGG - Chr8:54855869-54855888 None:intergenic 35.0%
AATAAGTTTGAACCGGACAA+AGG - Chr8:54856635-54856654 None:intergenic 35.0%
AATGTGAATTGCACATTGGT+TGG - Chr8:54855132-54855151 None:intergenic 35.0%
AATTGCAAACGGATGGAAAT+TGG - Chr8:54856067-54856086 None:intergenic 35.0%
AGGACTAACATGTTAAAGCA+GGG - Chr8:54855868-54855887 None:intergenic 35.0%
AGTTCATTTATATGGTCACC+TGG + Chr8:54854230-54854249 MsG0880045140.01.T01:CDS 35.0%
AGTTGAACACAACTGATACA+AGG - Chr8:54856150-54856169 None:intergenic 35.0%
ATACTGCAATTTACCTGGTA+AGG - Chr8:54857535-54857554 None:intergenic 35.0%
CAAGGCGATAAGAAATGTAA+CGG - Chr8:54857786-54857805 None:intergenic 35.0%
CAGCCTATTTATACGATAAG+AGG - Chr8:54855977-54855996 None:intergenic 35.0%
CGGATTACAGAAACAGTAAA+TGG - Chr8:54854873-54854892 None:intergenic 35.0%
GAGATCTATATAGGTAGGTA+TGG - Chr8:54856434-54856453 None:intergenic 35.0%
GTAGATTGGTAGATACTTGT+AGG + Chr8:54854476-54854495 MsG0880045140.01.T01:intron 35.0%
GTTATTGAAAGATTGCCTTC+TGG + Chr8:54857003-54857022 MsG0880045140.01.T01:CDS 35.0%
GTTGGCTGTAGTAATGTATT+TGG - Chr8:54857291-54857310 None:intergenic 35.0%
TACTGCAATTTACCTGGTAA+GGG - Chr8:54857534-54857553 None:intergenic 35.0%
TCACCAAATGAACAATTTCC+AGG - Chr8:54854251-54854270 None:intergenic 35.0%
TCACCTGGAAATTGTTCATT+TGG + Chr8:54854245-54854264 MsG0880045140.01.T01:CDS 35.0%
TCACTTATAGTATCAAGGGA+GGG + Chr8:54855211-54855230 MsG0880045140.01.T01:intron 35.0%
TCTGTATCTATTTGTTTGCC+TGG + Chr8:54854207-54854226 MsG0880045140.01.T01:CDS 35.0%
TGACCATATAAATGAACTCC+AGG - Chr8:54854228-54854247 None:intergenic 35.0%
TGACTTATAACAGCCTTACT+TGG - Chr8:54857350-54857369 None:intergenic 35.0%
TGATTGAGTCTTGACTTAAG+TGG + Chr8:54855439-54855458 MsG0880045140.01.T01:intron 35.0%
TGCTATTAGAGATAGGGTTT+GGG - Chr8:54856696-54856715 None:intergenic 35.0%
TGGAAATTGGACTTTCTCTT+TGG - Chr8:54856054-54856073 None:intergenic 35.0%
TTGCCTGGAGTTCATTTATA+TGG + Chr8:54854222-54854241 MsG0880045140.01.T01:CDS 35.0%
TTGGCATCTGTTTCAACAAT+AGG + Chr8:54855001-54855020 MsG0880045140.01.T01:intron 35.0%
TTTGTCGAATCTCTATGACA+TGG + Chr8:54854827-54854846 MsG0880045140.01.T01:intron 35.0%
! AATGGATTTCAACAGCAGAA+CGG - Chr8:54857257-54857276 None:intergenic 35.0%
! AGAATTTTACGATGGATGAG+TGG + Chr8:54855342-54855361 MsG0880045140.01.T01:intron 35.0%
! AGTGCTGGAAATGCATATTA+AGG - Chr8:54855888-54855907 None:intergenic 35.0%
! ATGTGAATTGCACATTGGTT+GGG - Chr8:54855131-54855150 None:intergenic 35.0%
! ATTGGTGACAGTTTGAAGTA+AGG + Chr8:54854430-54854449 MsG0880045140.01.T01:intron 35.0%
! CATATAAAGTGTCCTTTGTC+CGG + Chr8:54856620-54856639 MsG0880045140.01.T01:intron 35.0%
! TCATTTGGTGATTCAGAATC+AGG + Chr8:54854260-54854279 MsG0880045140.01.T01:CDS 35.0%
! TCTTGTTTGGAGAATACCAT+CGG + Chr8:54857730-54857749 MsG0880045140.01.T01:CDS 35.0%
! TGCATTACTCATCTTGCTTT+TGG + Chr8:54856331-54856350 MsG0880045140.01.T01:intron 35.0%
! TGTGTTTGGTGATACAAATC+TGG + Chr8:54857209-54857228 MsG0880045140.01.T01:CDS 35.0%
! TTGACTGTATCTGTTTTCCT+TGG + Chr8:54854961-54854980 MsG0880045140.01.T01:intron 35.0%
! TTGGTGACAGTTTGAAGTAA+GGG + Chr8:54854431-54854450 MsG0880045140.01.T01:intron 35.0%
!! ATTACTCATCTTGCTTTTGG+GGG + Chr8:54856334-54856353 MsG0880045140.01.T01:intron 35.0%
!! CATTACTCATCTTGCTTTTG+GGG + Chr8:54856333-54856352 MsG0880045140.01.T01:intron 35.0%
!! GCATTACTCATCTTGCTTTT+GGG + Chr8:54856332-54856351 MsG0880045140.01.T01:intron 35.0%
!! GTTTCACGTTTGTTGTCAAA+TGG - Chr8:54854807-54854826 None:intergenic 35.0%
AAAGCAGGGAATGTGTCAAA+AGG - Chr8:54855794-54855813 None:intergenic 40.0%
AAAGCAGGGAATGTGTCAAA+TGG - Chr8:54855794-54855813 None:intergenic 40.0%
AAGACCAGCATCATACAGAT+TGG - Chr8:54857714-54857733 None:intergenic 40.0%
AAGCAGGGAATGTGTCAAAA+GGG - Chr8:54855853-54855872 None:intergenic 40.0%
AAGCAGGGAATGTGTCAAAT+GGG - Chr8:54855793-54855812 None:intergenic 40.0%
ACACTGACCCAAACTTAGAA+AGG - Chr8:54854320-54854339 None:intergenic 40.0%
AGAGGGGAAAATGTAAGATG+AGG - Chr8:54857560-54857579 None:intergenic 40.0%
AGGCAATACTGCAATTTACC+TGG - Chr8:54857540-54857559 None:intergenic 40.0%
AGTTAGTAACTGAGAGTGAG+AGG + Chr8:54854558-54854577 MsG0880045140.01.T01:intron 40.0%
ATGTCTCAAGAAGTCACTTC+TGG + Chr8:54856811-54856830 MsG0880045140.01.T01:CDS 40.0%
CAATGTCAAGTTCAGGAAGA+AGG - Chr8:54854414-54854433 None:intergenic 40.0%
CAGACAAAGACTTCAACTGT+TGG - Chr8:54856954-54856973 None:intergenic 40.0%
CGGACAAAGGACACTTTATA+TGG - Chr8:54856622-54856641 None:intergenic 40.0%
CTGCTATTAGAGATAGGGTT+TGG - Chr8:54856697-54856716 None:intergenic 40.0%
CTGGATGAACATTTGCATGT+AGG + Chr8:54856498-54856517 MsG0880045140.01.T01:intron 40.0%
CTGTGTAAATCCACATAAGC+TGG + Chr8:54856460-54856479 MsG0880045140.01.T01:intron 40.0%
CTGTTATAAGGATGCTGAGT+GGG + Chr8:54854616-54854635 MsG0880045140.01.T01:intron 40.0%
CTTCTTCCTGAACTTGACAT+TGG + Chr8:54854412-54854431 MsG0880045140.01.T01:intron 40.0%
CTTGTTTGGAGAATACCATC+GGG + Chr8:54857731-54857750 MsG0880045140.01.T01:CDS 40.0%
GACCAATGTGAATTGCACAT+TGG - Chr8:54855136-54855155 None:intergenic 40.0%
GAGTCTTGACTTAAGTGGTT+TGG + Chr8:54855444-54855463 MsG0880045140.01.T01:intron 40.0%
GCTATTAGAGATAGGGTTTG+GGG - Chr8:54856695-54856714 None:intergenic 40.0%
GGCTACTCGATAGTTGAATT+TGG + Chr8:54857605-54857624 MsG0880045140.01.T01:CDS 40.0%
GTCACTTATAGTATCAAGGG+AGG + Chr8:54855210-54855229 MsG0880045140.01.T01:intron 40.0%
GTCAGGGAAATCCTGTTATA+AGG + Chr8:54854604-54854623 MsG0880045140.01.T01:intron 40.0%
GTTGTAAGACGTGATCTTGT+TGG + Chr8:54856883-54856902 MsG0880045140.01.T01:CDS 40.0%
TCAGAGGCTGCAAAAAAAGA+GGG - Chr8:54857577-54857596 None:intergenic 40.0%
TCTTGTTACCGGTACTTCTA+CGG - Chr8:54855486-54855505 None:intergenic 40.0%
TGGTCACAAAAGACACAGTA+AGG + Chr8:54855362-54855381 MsG0880045140.01.T01:intron 40.0%
TGTTATAAGGATGCTGAGTG+GGG + Chr8:54854617-54854636 MsG0880045140.01.T01:intron 40.0%
TTACAACATCTTGCTCAACG+TGG + Chr8:54857048-54857067 MsG0880045140.01.T01:CDS 40.0%
TTCAGAGGCTGCAAAAAAAG+AGG - Chr8:54857578-54857597 None:intergenic 40.0%
! TGTGAATTGCACATTGGTTG+GGG - Chr8:54855130-54855149 None:intergenic 40.0%
!! GATAGTTGAATTTGGTGCAC+CGG + Chr8:54857613-54857632 MsG0880045140.01.T01:CDS 40.0%
!! TGTATGATGCTGGTCTTGTT+TGG + Chr8:54857717-54857736 MsG0880045140.01.T01:CDS 40.0%
AAACCAGCCAACTGGAACAA+TGG - Chr8:54855912-54855931 None:intergenic 45.0%
ACTCTTTGGATGACTCTGAG+TGG - Chr8:54854518-54854537 None:intergenic 45.0%
ACTTGGTATCGTGCATGCAA+AGG - Chr8:54857333-54857352 None:intergenic 45.0%
AGCACTTCCATTGTTCCAGT+TGG + Chr8:54855902-54855921 MsG0880045140.01.T01:intron 45.0%
CAGAGGCTGCAAAAAAAGAG+GGG - Chr8:54857576-54857595 None:intergenic 45.0%
CAGTATTGTTGTCCCTTACC+AGG + Chr8:54857519-54857538 MsG0880045140.01.T01:intron 45.0%
CATCTACTGTGATGCGAATC+CGG - Chr8:54854893-54854912 None:intergenic 45.0%
CCACTCAGCATCCTTATAAC+AGG - Chr8:54854618-54854637 None:intergenic 45.0%
CCTGTTATAAGGATGCTGAG+TGG + Chr8:54854615-54854634 MsG0880045140.01.T01:intron 45.0%
CTCTTTGGATGACTCTGAGT+GGG - Chr8:54854517-54854536 None:intergenic 45.0%
CTGCAGCACAAAGGAAAAAC+TGG + Chr8:54857649-54857668 MsG0880045140.01.T01:CDS 45.0%
CTGCAGCGAAGTAACATATC+CGG - Chr8:54857635-54857654 None:intergenic 45.0%
CTGGTAAGGGACAACAATAC+TGG - Chr8:54857521-54857540 None:intergenic 45.0%
CTGTCACCAATGTCAAGTTC+AGG - Chr8:54854421-54854440 None:intergenic 45.0%
CTTGTTACCGGTACTTCTAC+GGG - Chr8:54855485-54855504 None:intergenic 45.0%
GAGAATACCATCGGGAAGAA+AGG + Chr8:54857739-54857758 MsG0880045140.01.T01:CDS 45.0%
GATGCCAATCTGTATGATGC+TGG + Chr8:54857707-54857726 MsG0880045140.01.T01:CDS 45.0%
GATTTCAACAGCAGAACGGT+TGG - Chr8:54857253-54857272 None:intergenic 45.0%
GCAAGATGAGTAATGCAGCA+AGG - Chr8:54856328-54856347 None:intergenic 45.0%
GGCAAGAGATGCAGAAACAT+TGG + Chr8:54854982-54855001 MsG0880045140.01.T01:intron 45.0%
TGCATGCACGATACCAAGTA+AGG + Chr8:54857334-54857353 MsG0880045140.01.T01:intron 45.0%
TTGCAGCCTCTGAATGAAAG+TGG + Chr8:54857584-54857603 MsG0880045140.01.T01:intron 45.0%
! AACTGGAACAATGGAAGTGC+TGG - Chr8:54855903-54855922 None:intergenic 45.0%
! AGACGTGATCTTGTTGGTGA+AGG + Chr8:54856889-54856908 MsG0880045140.01.T01:CDS 45.0%
! GAGTAGCCACTTTCATTCAG+AGG - Chr8:54857593-54857612 None:intergenic 45.0%
! TATTAAGAGGCGGAGAGCAT+TGG + Chr8:54854671-54854690 MsG0880045140.01.T01:intron 45.0%
! TGTTTCTGCATCTCTTGCCA+AGG - Chr8:54854981-54855000 None:intergenic 45.0%
! TTAAGTGGTTTGGACACGTG+TGG + Chr8:54855454-54855473 MsG0880045140.01.T01:intron 45.0%
!! AGCTTAGCTCTGTGGACAAT+AGG + Chr8:54854704-54854723 MsG0880045140.01.T01:intron 45.0%
ACAACCAAGCCTTTCTCTCC+AGG - Chr8:54855710-54855729 None:intergenic 50.0%
ATCTGTACCAGCAGTCAGCA+TGG + Chr8:54854454-54854473 MsG0880045140.01.T01:intron 50.0%
CAACATCTTGCTCAACGTGG+TGG + Chr8:54857051-54857070 MsG0880045140.01.T01:CDS 50.0%
CAGCAGTCAGCATGGTAGAT+TGG + Chr8:54854462-54854481 MsG0880045140.01.T01:intron 50.0%
CGGATTCGCATCACAGTAGA+TGG + Chr8:54854891-54854910 MsG0880045140.01.T01:intron 50.0%
CGTGTAAGAAACCAGCCAAC+TGG - Chr8:54855920-54855939 None:intergenic 50.0%
CTTCCATTGTTCCAGTTGGC+TGG + Chr8:54855906-54855925 MsG0880045140.01.T01:intron 50.0%
GAACGGTTGGACAAGAACGA+AGG - Chr8:54857240-54857259 None:intergenic 50.0%
GGATCGGCAAAAACTCCAGA+AGG - Chr8:54857021-54857040 None:intergenic 50.0%
GTTACTTCGCTGCAGCACAA+AGG + Chr8:54857640-54857659 MsG0880045140.01.T01:CDS 50.0%
TGGTGATTCAGAATCAGGCC+AGG + Chr8:54854265-54854284 MsG0880045140.01.T01:CDS 50.0%
! CAATCTACCATGCTGACTGC+TGG - Chr8:54854464-54854483 None:intergenic 50.0%
! GGAGAAACCCGTAGAAGTAC+CGG + Chr8:54855475-54855494 MsG0880045140.01.T01:intron 50.0%
! TGGTCTGTGTGAAGCACTTC+CGG + Chr8:54856831-54856850 MsG0880045140.01.T01:CDS 50.0%
ACCAAGCCTTTCTCTCCAGG+TGG - Chr8:54855707-54855726 None:intergenic 55.0%
CTTGTAGGCCCAAGTGTGCA+AGG + Chr8:54854491-54854510 MsG0880045140.01.T01:intron 55.0%
GAATGCGCCTTTCTTCCCGA+TGG - Chr8:54857749-54857768 None:intergenic 55.0%
TCCACCTGGAGAGAAAGGCT+TGG + Chr8:54855703-54855722 MsG0880045140.01.T01:intron 55.0%
TGAGTGGGCCTTGCACACTT+GGG - Chr8:54854502-54854521 None:intergenic 55.0%
!! CGGAGAGCATTGGTTCTCTG+AGG + Chr8:54854681-54854700 MsG0880045140.01.T01:intron 55.0%
!! CTCTGAGGAGCTTAGCTCTG+TGG + Chr8:54854696-54854715 MsG0880045140.01.T01:intron 55.0%
AGGATGCTGAGTGGGGAGAG+AGG + Chr8:54854624-54854643 MsG0880045140.01.T01:intron 60.0%
CCTTTCTCTCCAGGTGGAGC+CGG - Chr8:54855701-54855720 None:intergenic 60.0%
CTGAGTGGGCCTTGCACACT+TGG - Chr8:54854503-54854522 None:intergenic 60.0%
CTGAGTGGGGAGAGAGGGAT+AGG + Chr8:54854630-54854649 MsG0880045140.01.T01:intron 60.0%
GGATGCTGAGTGGGGAGAGA+GGG + Chr8:54854625-54854644 MsG0880045140.01.T01:intron 60.0%
! AGTGTATAGCCGGCTCCACC+TGG + Chr8:54855689-54855708 MsG0880045140.01.T01:intron 60.0%
CCGGCTCCACCTGGAGAGAA+AGG + Chr8:54855698-54855717 MsG0880045140.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 54854182 54857894 54854182 ID=MsG0880045140.01;Name=MsG0880045140.01
Chr8 mRNA 54854182 54857894 54854182 ID=MsG0880045140.01.T01;Parent=MsG0880045140.01;Name=MsG0880045140.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.66|0.5|1|0.66|0.5|4|11|278
Chr8 exon 54854182 54854290 54854182 ID=MsG0880045140.01.T01:exon:23645;Parent=MsG0880045140.01.T01
Chr8 exon 54856797 54857072 54856797 ID=MsG0880045140.01.T01:exon:23646;Parent=MsG0880045140.01.T01
Chr8 exon 54857193 54857350 54857193 ID=MsG0880045140.01.T01:exon:23647;Parent=MsG0880045140.01.T01
Chr8 exon 54857590 54857894 54857590 ID=MsG0880045140.01.T01:exon:23648;Parent=MsG0880045140.01.T01
Chr8 CDS 54854182 54854290 54854182 ID=MsG0880045140.01.T01:cds;Parent=MsG0880045140.01.T01
Chr8 CDS 54856797 54857072 54856797 ID=MsG0880045140.01.T01:cds;Parent=MsG0880045140.01.T01
Chr8 CDS 54857193 54857350 54857193 ID=MsG0880045140.01.T01:cds;Parent=MsG0880045140.01.T01
Chr8 CDS 54857590 54857883 54857590 ID=MsG0880045140.01.T01:cds;Parent=MsG0880045140.01.T01
Chr8 three_prime_UTR 54857884 54857894 54857884 ID=MsG0880045140.01.T01:three_prime_utr;Parent=MsG0880045140.01.T01
Gene Sequence

>MsG0880045140.01.T01

ATGACAACTAGACGACTTATTCAACTCTGTATCTATTTGTTTGCCTGGAGTTCATTTATATGGTCACCTGGAAATTGTTCATTTGGTGATTCAGAATCAGGCCAGGTTAATTTTGAAAATTTCATGTCTCAAGAAGTCACTTCTGGTCTGTGTGAAGCACTTCCGGAAAACCATAATTCCATGTTAAGATTGTCAGTTGTAAGACGTGATCTTGTTGGTGAAGGTTCTCATCGCCGTATGTCTACATTAATCAAATTACAAAGCCAACAGTTGAAGTCTTTGTCTGAACTTTTAAGCTACTCGTGTGAATTCATAGTTATTGAAAGATTGCCTTCTGGAGTTTTTGCCGATCCATTTGAATTACAACATCTTGCTCAACGTGGTGTGTTCAATGATATAGCTGTGTTTGGTGATACAAATCTGGAGCTGCCTTCGTTCTTGTCCAACCGTTCTGCTGTTGAAATCCATTTAGATGTTGATCCAAATACATTACTACAGCCAACAGATTTCAGCATAGAGTTTCCTTTGCATGCACGATACCAACCTCTGAATGAAAGTGGCTACTCGATAGTTGAATTTGGTGCACCGGATATGTTACTTCGCTGCAGCACAAAGGAAAAACTGGAAAATAACAATTGCTTGTTCAGATTGAAAAACGATGATGCCAATCTGTATGATGCTGGTCTTGTTTGGAGAATACCATCGGGAAGAAAGGCGCATTCTGAACTTGTCTCTGCCGTTACATTTCTTATCGCCTTGTTATCAACTCTTGTAATTGTGGTAACATCATTGCGTTATTTCAATTGTAGAGTGAACAAAGATTTGAAACAATCGTAA
Protein sequence

>MsG0880045140.01.T01

MTTRRLIQLCIYLFAWSSFIWSPGNCSFGDSESGQVNFENFMSQEVTSGLCEALPENHNSMLRLSVVRRDLVGEGSHRRMSTLIKLQSQQLKSLSELLSYSCEFIVIERLPSGVFADPFELQHLAQRGVFNDIAVFGDTNLELPSFLSNRSAVEIHLDVDPNTLLQPTDFSIEFPLHARYQPLNESGYSIVEFGAPDMLLRCSTKEKLENNNCLFRLKNDDANLYDAGLVWRIPSGRKAHSELVSAVTFLIALLSTLVIVVTSLRYFNCRVNKDLKQS*