AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005233.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005233.01.T01 MTR_1g095640 74.593 307 16 2 118 424 182 426 1.53e-129 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005233.01.T01 AT5G50840 58.824 289 52 3 134 422 181 402 9.06e-87 270
MsG0180005233.01.T01 AT5G50840 58.824 289 52 3 134 422 180 401 1.13e-86 270

Find 55 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACATGCATTGAATTTC+AGG 0.170965 1:-88917869 MsG0180005233.01.T01:CDS
TGCATTCTTCCTGAAAATAA+TGG 0.245108 1:+88920295 None:intergenic
TACTTCTTGAGAAACCTATT+TGG 0.283685 1:-88920891 MsG0180005233.01.T01:CDS
CAACCACCTCTTCTTCATAT+TGG 0.283834 1:+88917190 None:intergenic
AGAACAAGTATCTCAGTTAT+TGG 0.302337 1:-88918307 MsG0180005233.01.T01:CDS
TTTCTCAAGAAGTAACCTTT+TGG 0.311218 1:+88920900 None:intergenic
CGGGCATTGGACTTCCAAAT+AGG 0.322397 1:+88920877 None:intergenic
AAATTAGTCCTTGGTGGGTT+GGG 0.367376 1:-88921583 MsG0180005233.01.T01:intron
ATCGCTATGCCGGTCACTTC+AGG 0.373308 1:-88917269 MsG0180005233.01.T01:CDS
TGCTACAGGATGTGAGTATC+AGG 0.375897 1:-88918924 MsG0180005233.01.T01:intron
AGAGAAATTCCAACAGTTCC+AGG 0.384564 1:-88918244 MsG0180005233.01.T01:CDS
GACTGTAATGTAATAGAAAC+TGG 0.386543 1:+88922388 None:intergenic
TTCAAACCTTGATTGCATCT+TGG 0.400861 1:+88920220 None:intergenic
ACTATTATTACTCTTGTTCT+CGG 0.407706 1:+88917225 None:intergenic
CAGAATAAATGTCACCTTCT+GGG 0.408951 1:+88918513 None:intergenic
CACTTTCCTGATCATCCAAA+AGG 0.445788 1:-88920915 MsG0180005233.01.T01:CDS
CGTTCTCCTTTAGCTGAGAA+AGG 0.449090 1:+88918878 None:intergenic
ACAGTTGAAGCAAAAGTCAT+TGG 0.459008 1:-88918409 MsG0180005233.01.T01:intron
ATAAGCTTGAGTCACTATGC+AGG 0.470749 1:-88921866 MsG0180005233.01.T01:CDS
TAAGTTCCAAGATGCAATCA+AGG 0.480936 1:-88920226 MsG0180005233.01.T01:intron
AAAATTAGTCCTTGGTGGGT+TGG 0.485716 1:-88921584 MsG0180005233.01.T01:intron
AATTGAAAATTAGTCCTTGG+TGG 0.486573 1:-88921589 MsG0180005233.01.T01:intron
CGTTTGCAGCTGACAACTGA+TGG 0.491667 1:-88918267 MsG0180005233.01.T01:CDS
ATTAGTTCATTCTACAGAAA+CGG 0.492031 1:-88922340 MsG0180005233.01.T01:intron
CATCTTGCACTGCCTTGATG+AGG 0.492384 1:-88921557 MsG0180005233.01.T01:CDS
TGATTGCCTTTCTCAGCTAA+AGG 0.494939 1:-88918884 MsG0180005233.01.T01:CDS
AAATAATTACCAGCGGGCAT+TGG 0.501043 1:+88920864 None:intergenic
CGAGCGCTTGAAGAAACAGC+TGG 0.505935 1:-88917323 MsG0180005233.01.T01:CDS
ACATGAGGAAAGATCTGCTC+AGG 0.520293 1:-88918355 MsG0180005233.01.T01:CDS
ATCAATGAAGGAACTCAAGA+AGG 0.523923 1:-88917660 MsG0180005233.01.T01:CDS
ATTGAAAATTAGTCCTTGGT+GGG 0.532815 1:-88921588 MsG0180005233.01.T01:intron
TCCTCTCTGCCTGAAGTGAC+CGG 0.533884 1:+88917260 None:intergenic
GCACTTGTGTACAGAGCTGC+TGG 0.543023 1:-88921535 MsG0180005233.01.T01:intron
TCAGATGGCAAAATCAATGA+AGG 0.543783 1:-88917672 MsG0180005233.01.T01:intron
GATAACTGAATGTGCTAAGT+CGG 0.548424 1:-88922519 MsG0180005233.01.T01:CDS
TAGCACATAATATAATAAAG+TGG 0.550675 1:+88918181 None:intergenic
GCGTCAAAATAAAATGCTGA+TGG 0.573163 1:-88921835 MsG0180005233.01.T01:CDS
CAACTGAGGGGCAAAACTTG+AGG 0.580596 1:-88920263 MsG0180005233.01.T01:CDS
TGTACACAAGTGCCTCATCA+AGG 0.581153 1:+88921545 None:intergenic
TGCAAACGTGTATCAACTGA+GGG 0.582847 1:-88920276 MsG0180005233.01.T01:CDS
TGAGGGGCAAAACTTGAGGA+TGG 0.583482 1:-88920259 MsG0180005233.01.T01:CDS
TTTGGAAGTCCAATGCCCGC+TGG 0.587438 1:-88920873 MsG0180005233.01.T01:intron
TGACTCAAGCTTATCTCTGA+CGG 0.609729 1:+88921875 None:intergenic
TGAGCAGCAATATGCCCAGA+AGG 0.617929 1:-88918527 MsG0180005233.01.T01:intron
TATCAGGCTCGAAGAACGAA+AGG 0.619128 1:-88918908 MsG0180005233.01.T01:CDS
TAAGGTATTCGGTCTCATTG+CGG 0.634523 1:-88917405 MsG0180005233.01.T01:intron
TAAGCTTGAGTCACTATGCA+GGG 0.636629 1:-88921865 MsG0180005233.01.T01:CDS
ACTTATAGAGTTAGTTGACG+AGG 0.647388 1:-88917594 MsG0180005233.01.T01:CDS
ATTTAAACAAGAGATTGAGA+AGG 0.652438 1:-88917812 MsG0180005233.01.T01:intron
GCCGGTCACTTCAGGCAGAG+AGG 0.655548 1:-88917261 MsG0180005233.01.T01:CDS
ATGCAAACGTGTATCAACTG+AGG 0.661308 1:-88920277 MsG0180005233.01.T01:CDS
AGATGAAACCCAACCCACCA+AGG 0.665039 1:+88921575 None:intergenic
GAGTAATAATAGTAACAACT+CGG 0.668165 1:-88917215 MsG0180005233.01.T01:CDS
GAAATTCCAACAGTTCCAGG+TGG 0.691572 1:-88918241 MsG0180005233.01.T01:CDS
GCAAACGTGTATCAACTGAG+GGG 0.772676 1:-88920275 MsG0180005233.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG + Chr1:88919653-88919672 None:intergenic 0.0%
!! AAGAGAATTTAAATAATTAA+TGG + Chr1:88918555-88918574 None:intergenic 10.0%
!! ATATATTATAGAATAGTAAA+TGG + Chr1:88922189-88922208 None:intergenic 10.0%
!! CTATTCTATAATATATAAAT+AGG - Chr1:88922193-88922212 MsG0180005233.01.T01:intron 10.0%
!! TTGAAAAAAATGTAATATTT+AGG + Chr1:88921953-88921972 None:intergenic 10.0%
!!! TTGATTCATTTTTAAAAATA+TGG + Chr1:88922348-88922367 None:intergenic 10.0%
!!! TTTTTTTCTTGTATTAATTT+GGG - Chr1:88917667-88917686 MsG0180005233.01.T01:CDS 10.0%
!!! TTTTTTTTCTTGTATTAATT+TGG - Chr1:88917666-88917685 MsG0180005233.01.T01:CDS 10.0%
!! AAAAATTAGTTACAGATTAA+GGG + Chr1:88917794-88917813 None:intergenic 15.0%
!! AAAATTAAACACATATACTT+TGG + Chr1:88918421-88918440 None:intergenic 15.0%
!! AATATTATACCAAGTATTAT+CGG + Chr1:88920950-88920969 None:intergenic 15.0%
!! ATATACAAAGAAAATCTAAA+TGG - Chr1:88920360-88920379 MsG0180005233.01.T01:CDS 15.0%
!! TATTACTATTCTTTACAATT+CGG + Chr1:88920697-88920716 None:intergenic 15.0%
!!! AAAAACTTAAAAACAGATTT+TGG - Chr1:88919789-88919808 MsG0180005233.01.T01:intron 15.0%
!!! ATAAACTTTTATCAATTTCT+AGG - Chr1:88918918-88918937 MsG0180005233.01.T01:CDS 15.0%
!!! GATGAATTATTTTCTTTTAT+AGG - Chr1:88920197-88920216 MsG0180005233.01.T01:intron 15.0%
!!! TTAAAAATTTGCTGAAAAAT+GGG + Chr1:88920010-88920029 None:intergenic 15.0%
!!! TTGTTATTGTATATATTGTT+GGG - Chr1:88920175-88920194 MsG0180005233.01.T01:intron 15.0%
!!! TTTAAAAATTTGCTGAAAAA+TGG + Chr1:88920011-88920030 None:intergenic 15.0%
!!! TTTAGATTTTCTTTGTATAT+AGG + Chr1:88920360-88920379 None:intergenic 15.0%
!! AAAAATTACAAAAGAGTAAG+TGG + Chr1:88919769-88919788 None:intergenic 20.0%
!! AAACCATCTTAATTATATCT+CGG - Chr1:88918626-88918645 MsG0180005233.01.T01:intron 20.0%
!! ACATAGTGTAATCAAATTAT+TGG - Chr1:88917412-88917431 MsG0180005233.01.T01:intron 20.0%
!! ATAATTGAAAAATGATTCCA+TGG + Chr1:88920735-88920754 None:intergenic 20.0%
!! ATAGCAATACATTTAAAAAG+AGG + Chr1:88917260-88917279 None:intergenic 20.0%
!! ATATAAATAGGGAGATAAAT+TGG - Chr1:88922205-88922224 MsG0180005233.01.T01:intron 20.0%
!! ATTAAAAATTAAGCAACATG+AGG - Chr1:88921355-88921374 MsG0180005233.01.T01:intron 20.0%
!! ATTACTATTCTTTACAATTC+GGG + Chr1:88920696-88920715 None:intergenic 20.0%
!! CAAAAATTAGTTACAGATTA+AGG + Chr1:88917795-88917814 None:intergenic 20.0%
!! CATAGTGTAATCAAATTATT+GGG - Chr1:88917413-88917432 MsG0180005233.01.T01:intron 20.0%
!! TAATTGAAAAATGATTCCAT+GGG + Chr1:88920734-88920753 None:intergenic 20.0%
!! TAGCACATAATATAATAAAG+TGG + Chr1:88921547-88921566 None:intergenic 20.0%
!! TATAAACTAAACATGAGAAA+TGG + Chr1:88918250-88918269 None:intergenic 20.0%
!!! AAATCATGTCGAATTATTTT+AGG + Chr1:88921125-88921144 None:intergenic 20.0%
!!! AATTACCATATTTTGATAGA+CGG + Chr1:88922285-88922304 None:intergenic 20.0%
!!! ACCATTGATTTGTTTAATAA+CGG - Chr1:88921664-88921683 MsG0180005233.01.T01:intron 20.0%
!!! CATTTCATTTTTGTTTCAAA+AGG + Chr1:88918705-88918724 None:intergenic 20.0%
!!! CTCTTTTTAAAAGGAAAAAA+GGG - Chr1:88921058-88921077 MsG0180005233.01.T01:intron 20.0%
!!! GTTGTTATTGTATATATTGT+TGG - Chr1:88920174-88920193 MsG0180005233.01.T01:intron 20.0%
!!! TATTTATTAACTTTTGAGAC+TGG - Chr1:88921265-88921284 MsG0180005233.01.T01:intron 20.0%
!!! TCTTCTTAAAAAACTTTTCA+GGG + Chr1:88920883-88920902 None:intergenic 20.0%
!!! TTGATTTGTTATGAAAGTTT+TGG - Chr1:88919044-88919063 MsG0180005233.01.T01:intron 20.0%
!!! TTTCAGCAAATTTTTAAATC+TGG - Chr1:88920013-88920032 MsG0180005233.01.T01:intron 20.0%
! AAAATTGTACCATGTTCAAA+TGG + Chr1:88917649-88917668 None:intergenic 25.0%
! AACCATCTTAATTATATCTC+GGG - Chr1:88918627-88918646 MsG0180005233.01.T01:intron 25.0%
! AATAAGAAAAGGAACTCATT+AGG + Chr1:88919308-88919327 None:intergenic 25.0%
! AATCAATCTAAATCAAAGAC+AGG - Chr1:88919937-88919956 MsG0180005233.01.T01:intron 25.0%
! ACCGTTATTAAACAAATCAA+TGG + Chr1:88921668-88921687 None:intergenic 25.0%
! ACTATTATTACTCTTGTTCT+CGG + Chr1:88922503-88922522 None:intergenic 25.0%
! ACTCTGTTAATGAAAAAACT+AGG - Chr1:88919398-88919417 MsG0180005233.01.T01:intron 25.0%
! ATCAATCTAAATCAAAGACA+GGG - Chr1:88919938-88919957 MsG0180005233.01.T01:intron 25.0%
! ATTAGATTCCAATATGTTCA+AGG - Chr1:88920045-88920064 MsG0180005233.01.T01:intron 25.0%
! ATTAGTTCATTCTACAGAAA+CGG - Chr1:88917385-88917404 MsG0180005233.01.T01:CDS 25.0%
! ATTCGACATGATTTCAATAT+AGG - Chr1:88921131-88921150 MsG0180005233.01.T01:intron 25.0%
! ATTCTATGCTCAAAGATTAA+GGG + Chr1:88919832-88919851 None:intergenic 25.0%
! ATTTAAACAAGAGATTGAGA+AGG - Chr1:88921913-88921932 MsG0180005233.01.T01:intron 25.0%
! CACATAAACACATAAACTAA+GGG - Chr1:88918301-88918320 MsG0180005233.01.T01:CDS 25.0%
! CACATTCATGTAATAAGAAA+AGG + Chr1:88919319-88919338 None:intergenic 25.0%
! CATATTAACTGTTGTTATGT+TGG - Chr1:88917233-88917252 MsG0180005233.01.T01:CDS 25.0%
! CCAAAGAAACATTAATTTCA+AGG + Chr1:88919868-88919887 None:intergenic 25.0%
! CCTTGAAATTAATGTTTCTT+TGG - Chr1:88919865-88919884 MsG0180005233.01.T01:intron 25.0%
! CTGTTAGGATATAGAATAAA+CGG - Chr1:88920458-88920477 MsG0180005233.01.T01:intron 25.0%
! GAGTAATAATAGTAACAACT+CGG - Chr1:88922510-88922529 MsG0180005233.01.T01:CDS 25.0%
! GGAATATTTGTATAGATAAG+AGG - Chr1:88920505-88920524 MsG0180005233.01.T01:intron 25.0%
! GTAATTTGATACTAGGATAT+TGG - Chr1:88917455-88917474 MsG0180005233.01.T01:intron 25.0%
! TATTAGATAATCAGTTTCAG+AGG + Chr1:88917937-88917956 None:intergenic 25.0%
! TATTCTATGCTCAAAGATTA+AGG + Chr1:88919833-88919852 None:intergenic 25.0%
! TCACATAAACACATAAACTA+AGG - Chr1:88918300-88918319 MsG0180005233.01.T01:CDS 25.0%
! TGTTAGGATATAGAATAAAC+GGG - Chr1:88920459-88920478 MsG0180005233.01.T01:intron 25.0%
! TGTTGAATGCCTAAAAAATT+AGG - Chr1:88917979-88917998 MsG0180005233.01.T01:intron 25.0%
! TTTAATGAAATTGCTTATCG+TGG + Chr1:88918603-88918622 None:intergenic 25.0%
!! ATACAATGGCTCTTTTTAAA+AGG - Chr1:88921049-88921068 MsG0180005233.01.T01:intron 25.0%
!! ATTCATGTTCCATTATTTTC+AGG - Chr1:88919421-88919440 MsG0180005233.01.T01:intron 25.0%
!! GTCTTCTTAAAAAACTTTTC+AGG + Chr1:88920884-88920903 None:intergenic 25.0%
!! TTCTTGTATTAATTTGGGTT+AGG - Chr1:88917672-88917691 MsG0180005233.01.T01:intron 25.0%
!! TTTTGAACAAAGTGTACATT+TGG - Chr1:88919557-88919576 MsG0180005233.01.T01:intron 25.0%
!!! ATAGTAATATCTTTTCTAGC+TGG - Chr1:88920708-88920727 MsG0180005233.01.T01:intron 25.0%
!!! ATTTTTGCTTTTCATCCTTA+AGG - Chr1:88922302-88922321 MsG0180005233.01.T01:intron 25.0%
!!! CTTAAAAACAGATTTTGGAA+AGG - Chr1:88919794-88919813 MsG0180005233.01.T01:intron 25.0%
!!! GCTCTTTTTAAAAGGAAAAA+AGG - Chr1:88921057-88921076 MsG0180005233.01.T01:intron 25.0%
!!! TACTTATCCCTATTTTAGAA+TGG - Chr1:88921736-88921755 MsG0180005233.01.T01:intron 25.0%
!!! TCATTTTTGTTTCAAAAGGA+TGG + Chr1:88918701-88918720 None:intergenic 25.0%
!!! TGTATGTAATTTTGTTTAGC+TGG - Chr1:88919101-88919120 MsG0180005233.01.T01:intron 25.0%
!!! TTTTAAAAAGAGCCATTGTA+TGG + Chr1:88921050-88921069 None:intergenic 25.0%
AAAAATACTGTAGCGAGATT+AGG + Chr1:88919169-88919188 None:intergenic 30.0%
AAAAGAGACATTCTTCAAGA+CGG + Chr1:88919141-88919160 None:intergenic 30.0%
AACAATCATAGGATCCATAA+AGG + Chr1:88921092-88921111 None:intergenic 30.0%
AATTGAAAATTAGTCCTTGG+TGG - Chr1:88918136-88918155 MsG0180005233.01.T01:intron 30.0%
ACCATCTTAATTATATCTCG+GGG - Chr1:88918628-88918647 MsG0180005233.01.T01:intron 30.0%
AGAACAAGTATCTCAGTTAT+TGG - Chr1:88921418-88921437 MsG0180005233.01.T01:intron 30.0%
AGAGAAGCAATACATTTAGA+AGG + Chr1:88917584-88917603 None:intergenic 30.0%
AGTTTATGTGTTTATGTGAG+TGG + Chr1:88918299-88918318 None:intergenic 30.0%
ATCCTAGTATCAAATTACAC+TGG + Chr1:88917453-88917472 None:intergenic 30.0%
ATGTGTCATAAATTAAAGCG+TGG + Chr1:88919590-88919609 None:intergenic 30.0%
ATTCAAGTGCTCAATTACAA+AGG + Chr1:88917516-88917535 None:intergenic 30.0%
ATTGAAAATTAGTCCTTGGT+GGG - Chr1:88918137-88918156 MsG0180005233.01.T01:intron 30.0%
ATTTGATACTAGGATATTGG+AGG - Chr1:88917458-88917477 MsG0180005233.01.T01:intron 30.0%
CAAACAAATTCAGATTTCCA+TGG + Chr1:88918105-88918124 None:intergenic 30.0%
CTGAATAGATGTATTTCAAC+AGG - Chr1:88918887-88918906 MsG0180005233.01.T01:CDS 30.0%
CTGACTACAAAACCAAATTT+GGG - Chr1:88918014-88918033 MsG0180005233.01.T01:intron 30.0%
GACTGTAATGTAATAGAAAC+TGG + Chr1:88917340-88917359 None:intergenic 30.0%
GCTAATTGAAAATTAGTCCT+TGG - Chr1:88918133-88918152 MsG0180005233.01.T01:intron 30.0%
GGTTAATATCCCTGAAATAT+AGG - Chr1:88920283-88920302 MsG0180005233.01.T01:CDS 30.0%
GTCTTCATTTGGAAAATTGA+TGG - Chr1:88920664-88920683 MsG0180005233.01.T01:intron 30.0%
GTGACTAACATATTGCTTTA+TGG + Chr1:88922232-88922251 None:intergenic 30.0%
GTTTATGTGTTTATGTGAGT+GGG + Chr1:88918298-88918317 None:intergenic 30.0%
TAAATGGTCAAGAACAAAAC+AGG + Chr1:88922173-88922192 None:intergenic 30.0%
TAATATCCCTGAAATATAGG+TGG - Chr1:88920286-88920305 MsG0180005233.01.T01:CDS 30.0%
TACCAGTGTAATTTGATACT+AGG - Chr1:88917448-88917467 MsG0180005233.01.T01:intron 30.0%
TACTTCTTGAGAAACCTATT+TGG - Chr1:88918834-88918853 MsG0180005233.01.T01:intron 30.0%
TATGCACACATAACAAATCA+TGG + Chr1:88921636-88921655 None:intergenic 30.0%
TCAAACATGCATTGAATTTC+AGG - Chr1:88921856-88921875 MsG0180005233.01.T01:CDS 30.0%
TCAACAAGAATTTCTCAAAG+AGG + Chr1:88919028-88919047 None:intergenic 30.0%
TCAGACAAAATAATTACCAG+CGG + Chr1:88918871-88918890 None:intergenic 30.0%
TCATTGTGGTAAAAATCAGA+TGG - Chr1:88922038-88922057 MsG0180005233.01.T01:intron 30.0%
TCTAAATGACCATTTGAACA+TGG - Chr1:88917637-88917656 MsG0180005233.01.T01:CDS 30.0%
TCTGACTACAAAACCAAATT+TGG - Chr1:88918013-88918032 MsG0180005233.01.T01:intron 30.0%
TGACTACAAAACCAAATTTG+GGG - Chr1:88918015-88918034 MsG0180005233.01.T01:intron 30.0%
TGCATCTTCTTAACTGTAAT+GGG - Chr1:88917536-88917555 MsG0180005233.01.T01:intron 30.0%
TGCATTCTTCCTGAAAATAA+TGG + Chr1:88919433-88919452 None:intergenic 30.0%
TGCTTGAATCATATCTTACT+TGG - Chr1:88921982-88922001 MsG0180005233.01.T01:intron 30.0%
TGTATAGATAAGAGGATAGT+AGG - Chr1:88920513-88920532 MsG0180005233.01.T01:intron 30.0%
TGTTAAAACTACCAAACGTT+TGG - Chr1:88918723-88918742 MsG0180005233.01.T01:intron 30.0%
TTAAACACATATACTTTGGC+AGG + Chr1:88918417-88918436 None:intergenic 30.0%
TTATACCAAGTATTATCGGA+TGG + Chr1:88920946-88920965 None:intergenic 30.0%
TTGCATCTTCTTAACTGTAA+TGG - Chr1:88917535-88917554 MsG0180005233.01.T01:intron 30.0%
TTGTGACTGAAATGAAAAAG+AGG + Chr1:88921519-88921538 None:intergenic 30.0%
TTTCTCCGTCTATCAAAATA+TGG - Chr1:88922277-88922296 MsG0180005233.01.T01:intron 30.0%
TTTGATACTAGGATATTGGA+GGG - Chr1:88917459-88917478 MsG0180005233.01.T01:intron 30.0%
! GGTATCTAAATTCTGAAGAA+GGG - Chr1:88918211-88918230 MsG0180005233.01.T01:CDS 30.0%
! GTAATAGAAACTGGTTTCTA+TGG + Chr1:88917331-88917350 None:intergenic 30.0%
! TCTGATTTGAAACATAGTGT+GGG - Chr1:88921786-88921805 MsG0180005233.01.T01:intron 30.0%
! TCTGATTTTTACCACAATGA+TGG + Chr1:88922038-88922057 None:intergenic 30.0%
! TGGTATCTAAATTCTGAAGA+AGG - Chr1:88918210-88918229 MsG0180005233.01.T01:CDS 30.0%
! TGTATTAATTTGGGTTAGGT+TGG - Chr1:88917676-88917695 MsG0180005233.01.T01:intron 30.0%
! TTCTGATTTGAAACATAGTG+TGG - Chr1:88921785-88921804 MsG0180005233.01.T01:intron 30.0%
! TTTCTCAAGAAGTAACCTTT+TGG + Chr1:88918828-88918847 None:intergenic 30.0%
! TTTTACCATCCGATAATACT+TGG - Chr1:88920938-88920957 MsG0180005233.01.T01:intron 30.0%
!! CCAAACACCATTCTAAAATA+GGG + Chr1:88921746-88921765 None:intergenic 30.0%
!! CTTTTCATCCTTAAGGTATT+CGG - Chr1:88922309-88922328 MsG0180005233.01.T01:intron 30.0%
!! TTTTACCACAATGATGGAAA+AGG + Chr1:88922032-88922051 None:intergenic 30.0%
!! TTTTGGAAAGGATATCAAAC+AGG - Chr1:88919806-88919825 MsG0180005233.01.T01:intron 30.0%
!!! CAGTATTTTTTTTCCCTTTC+TGG - Chr1:88919179-88919198 MsG0180005233.01.T01:intron 30.0%
!!! GAAAATCTTTTTGGGATTCT+TGG - Chr1:88918977-88918996 MsG0180005233.01.T01:intron 30.0%
!!! GTTGTTTTGAGAAACACTTA+GGG - Chr1:88917717-88917736 MsG0180005233.01.T01:intron 30.0%
!!! TGTTGTTTTGAGAAACACTT+AGG - Chr1:88917716-88917735 MsG0180005233.01.T01:intron 30.0%
!!! TTGCTACTTAGTTTTGAGTT+CGG - Chr1:88919913-88919932 MsG0180005233.01.T01:intron 30.0%
!!! TTGTTTTGAGAAACACTTAG+GGG - Chr1:88917718-88917737 MsG0180005233.01.T01:intron 30.0%
AAAAACTTGAATCGCTATGC+CGG - Chr1:88922446-88922465 MsG0180005233.01.T01:intron 35.0%
AAACTACCAAACGTTTGGAA+TGG - Chr1:88918728-88918747 MsG0180005233.01.T01:intron 35.0%
AAGCAAGTGATACTACTGTT+AGG - Chr1:88920443-88920462 MsG0180005233.01.T01:intron 35.0%
AAGTGAATTGTTCACTTCAG+TGG - Chr1:88921712-88921731 MsG0180005233.01.T01:intron 35.0%
AATGCTCTGGCAAATTCTTT+GGG - Chr1:88920262-88920281 MsG0180005233.01.T01:CDS 35.0%
AATTACTGCTTGATCTTTCG+CGG + Chr1:88920090-88920109 None:intergenic 35.0%
ACAAGAATTTCTCAAAGAGG+AGG + Chr1:88919025-88919044 None:intergenic 35.0%
ACAGAATAAATGTCACCTTC+TGG + Chr1:88921216-88921235 None:intergenic 35.0%
ACAGTTGAAGCAAAAGTCAT+TGG - Chr1:88921316-88921335 MsG0180005233.01.T01:intron 35.0%
ACATATACTTTGGCAGGATA+GGG + Chr1:88918411-88918430 None:intergenic 35.0%
ACCCCGAGATATAATTAAGA+TGG + Chr1:88918632-88918651 None:intergenic 35.0%
ACTTATAGAGTTAGTTGACG+AGG - Chr1:88922131-88922150 MsG0180005233.01.T01:intron 35.0%
AGGAACTCATTAGGATAAAG+AGG + Chr1:88919299-88919318 None:intergenic 35.0%
AGTTGTGCAAATATGATGTC+AGG + Chr1:88918775-88918794 None:intergenic 35.0%
ATAAGAGGATAGTAGGATAG+AGG - Chr1:88920520-88920539 MsG0180005233.01.T01:intron 35.0%
ATCAATGAAGGAACTCAAGA+AGG - Chr1:88922065-88922084 MsG0180005233.01.T01:intron 35.0%
ATTATATCTCGGGGTATAGT+TGG - Chr1:88918637-88918656 MsG0180005233.01.T01:intron 35.0%
CAAATGAAGACTTTAGACTC+GGG + Chr1:88920655-88920674 None:intergenic 35.0%
CAAATTCAGATTTCCATGGA+TGG + Chr1:88918101-88918120 None:intergenic 35.0%
CAAGAATTTCTCAAAGAGGA+GGG + Chr1:88919024-88919043 None:intergenic 35.0%
CAGAATAAATGTCACCTTCT+GGG + Chr1:88921215-88921234 None:intergenic 35.0%
CAGACAAAATAATTACCAGC+GGG + Chr1:88918870-88918889 None:intergenic 35.0%
CCAAATGAAGACTTTAGACT+CGG + Chr1:88920656-88920675 None:intergenic 35.0%
GAAAAATGGGTGTGCAAAAT+AGG + Chr1:88919997-88920016 None:intergenic 35.0%
GAATGCCTAAAAAATTAGGC+AGG - Chr1:88917983-88918002 MsG0180005233.01.T01:intron 35.0%
GATAAAGAGGAGATACAACA+TGG + Chr1:88919286-88919305 None:intergenic 35.0%
GATAACTGAATGTGCTAAGT+CGG - Chr1:88917206-88917225 MsG0180005233.01.T01:CDS 35.0%
GCGTCAAAATAAAATGCTGA+TGG - Chr1:88917890-88917909 MsG0180005233.01.T01:intron 35.0%
GCTCAACAAGAAACAATCAT+AGG + Chr1:88921103-88921122 None:intergenic 35.0%
TAAGAGGATAGTAGGATAGA+GGG - Chr1:88920521-88920540 MsG0180005233.01.T01:intron 35.0%
TAAGTTCCAAGATGCAATCA+AGG - Chr1:88919499-88919518 MsG0180005233.01.T01:intron 35.0%
TACAAAAGAGTAAGTGGTGT+TGG + Chr1:88919763-88919782 None:intergenic 35.0%
TAGCAAAGAGAAGTTAGCAA+TGG + Chr1:88920786-88920805 None:intergenic 35.0%
TCAGATGGCAAAATCAATGA+AGG - Chr1:88922053-88922072 MsG0180005233.01.T01:intron 35.0%
TCCAATATGTTCAAGGATAG+AGG - Chr1:88920052-88920071 MsG0180005233.01.T01:intron 35.0%
TCCTCTATCCTTGAACATAT+TGG + Chr1:88920056-88920075 None:intergenic 35.0%
TGGGATTCTTGGAAGTAATT+TGG - Chr1:88918988-88919007 MsG0180005233.01.T01:intron 35.0%
TTAGCATCTATTCAATGCTC+TGG - Chr1:88920249-88920268 MsG0180005233.01.T01:CDS 35.0%
TTATATCTCGGGGTATAGTT+GGG - Chr1:88918638-88918657 MsG0180005233.01.T01:intron 35.0%
TTCAAACCTTGATTGCATCT+TGG + Chr1:88919508-88919527 None:intergenic 35.0%
TTCGAGTAGTTAGTTAGTAG+AGG - Chr1:88920484-88920503 MsG0180005233.01.T01:intron 35.0%
TTGAGCATAGAATAGCAGAT+GGG - Chr1:88919839-88919858 MsG0180005233.01.T01:intron 35.0%
TTTGAGCATAGAATAGCAGA+TGG - Chr1:88919838-88919857 MsG0180005233.01.T01:intron 35.0%
! AAGTAACCTTTTGGATGATC+AGG + Chr1:88918819-88918838 None:intergenic 35.0%
! ATCCCAAAAAGATTTTCCAG+AGG + Chr1:88918974-88918993 None:intergenic 35.0%
! ATGGGATTGTATTGCTCTTT+TGG - Chr1:88917554-88917573 MsG0180005233.01.T01:intron 35.0%
! TGTTTTACTGCACCATACAA+TGG - Chr1:88921035-88921054 MsG0180005233.01.T01:intron 35.0%
!! CTCCTCTGGAAAATCTTTTT+GGG - Chr1:88918969-88918988 MsG0180005233.01.T01:intron 35.0%
!! GCCAAACACCATTCTAAAAT+AGG + Chr1:88921747-88921766 None:intergenic 35.0%
!! TAGCAATGGCAATTGCTTTT+TGG + Chr1:88920772-88920791 None:intergenic 35.0%
!! TCTCCTCTGGAAAATCTTTT+TGG - Chr1:88918968-88918987 MsG0180005233.01.T01:intron 35.0%
!!! AACCTCCTGCCTAATTTTTT+AGG + Chr1:88917991-88918010 None:intergenic 35.0%
!!! CCCTATTTTAGAATGGTGTT+TGG - Chr1:88921743-88921762 MsG0180005233.01.T01:intron 35.0%
AAAAAACCACCTGGAACTGT+TGG + Chr1:88921493-88921512 None:intergenic 40.0%
AAAGGGAACACGTTCCTTTA+TGG - Chr1:88921075-88921094 MsG0180005233.01.T01:intron 40.0%
AAATAATTACCAGCGGGCAT+TGG + Chr1:88918864-88918883 None:intergenic 40.0%
AAGAATCTGATCACACTACC+AGG + Chr1:88919349-88919368 None:intergenic 40.0%
AAGAGGACAAAAAAACCACC+TGG + Chr1:88921502-88921521 None:intergenic 40.0%
ACACCACCAAAGATATGGAA+TGG + Chr1:88918464-88918483 None:intergenic 40.0%
ACATGAATGTGACTTCTACC+TGG - Chr1:88919328-88919347 MsG0180005233.01.T01:intron 40.0%
ACCTTACACCACCAAAGATA+TGG + Chr1:88918469-88918488 None:intergenic 40.0%
ACTAAACATGAGAAATGGCC+AGG + Chr1:88918245-88918264 None:intergenic 40.0%
AGAAATAGAGAGATCCACCA+AGG + Chr1:88920620-88920639 None:intergenic 40.0%
AGAGAAATTCCAACAGTTCC+AGG - Chr1:88921481-88921500 MsG0180005233.01.T01:intron 40.0%
ATAAGCTTGAGTCACTATGC+AGG - Chr1:88917859-88917878 MsG0180005233.01.T01:CDS 40.0%
ATGCAAACGTGTATCAACTG+AGG - Chr1:88919448-88919467 MsG0180005233.01.T01:intron 40.0%
ATTACTGCTTGATCTTTCGC+GGG + Chr1:88920089-88920108 None:intergenic 40.0%
CAATGAGACCGAATACCTTA+AGG + Chr1:88922320-88922339 None:intergenic 40.0%
CAATGCTCTGGCAAATTCTT+TGG - Chr1:88920261-88920280 MsG0180005233.01.T01:CDS 40.0%
CACATATACTTTGGCAGGAT+AGG + Chr1:88918412-88918431 None:intergenic 40.0%
CACCAAAGATATGGAATGGA+GGG + Chr1:88918460-88918479 None:intergenic 40.0%
CACTTTCCTGATCATCCAAA+AGG - Chr1:88918810-88918829 MsG0180005233.01.T01:intron 40.0%
CTAAACTAGCACACCCAAAT+TGG - Chr1:88919681-88919700 MsG0180005233.01.T01:intron 40.0%
CTAAGTGATTTCGCTTGTAG+TGG - Chr1:88918050-88918069 MsG0180005233.01.T01:intron 40.0%
GAAATAGAGAGATCCACCAA+GGG + Chr1:88920619-88920638 None:intergenic 40.0%
TAAGCTTGAGTCACTATGCA+GGG - Chr1:88917860-88917879 MsG0180005233.01.T01:CDS 40.0%
TCTAAATGGTGCCTAGTTGA+TGG - Chr1:88920374-88920393 MsG0180005233.01.T01:intron 40.0%
TGACGGCAAAAGCTACAAAA+AGG + Chr1:88917836-88917855 None:intergenic 40.0%
TGACTCAAGCTTATCTCTGA+CGG + Chr1:88917853-88917872 None:intergenic 40.0%
TGAGAAACACTTAGGGGAAA+TGG - Chr1:88917724-88917743 MsG0180005233.01.T01:intron 40.0%
TGATTGCCTTTCTCAGCTAA+AGG - Chr1:88920841-88920860 MsG0180005233.01.T01:intron 40.0%
TGCAAACGTGTATCAACTGA+GGG - Chr1:88919449-88919468 MsG0180005233.01.T01:intron 40.0%
TGCCTAAAAAATTAGGCAGG+AGG - Chr1:88917986-88918005 MsG0180005233.01.T01:intron 40.0%
TGCTAACTTCTCTTTGCTAC+AGG - Chr1:88920787-88920806 MsG0180005233.01.T01:intron 40.0%
TGGTTGTTGCTACTGATATG+TGG - Chr1:88919221-88919240 MsG0180005233.01.T01:intron 40.0%
TTGATGGAAACTGGTAGGAA+TGG - Chr1:88920390-88920409 MsG0180005233.01.T01:intron 40.0%
! AAAATTAGTCCTTGGTGGGT+TGG - Chr1:88918141-88918160 MsG0180005233.01.T01:intron 40.0%
! AGTCAGATTAGCCCCAAATT+TGG + Chr1:88918029-88918048 None:intergenic 40.0%
! ATTCTCTCTGGTGCCAATTT+GGG + Chr1:88919697-88919716 None:intergenic 40.0%
! CCGAGTCTAAAGTCTTCATT+TGG - Chr1:88920653-88920672 MsG0180005233.01.T01:intron 40.0%
! TAAGGTATTCGGTCTCATTG+CGG - Chr1:88922320-88922339 MsG0180005233.01.T01:intron 40.0%
! TACCAAACGTTTGGAATGGA+GGG - Chr1:88918732-88918751 MsG0180005233.01.T01:intron 40.0%
!! AAATCAGAACCAGAAGTGCT+AGG + Chr1:88921774-88921793 None:intergenic 40.0%
!! AAATTAGTCCTTGGTGGGTT+GGG - Chr1:88918142-88918161 MsG0180005233.01.T01:intron 40.0%
!! TCCATATCTTTGGTGGTGTA+AGG - Chr1:88918465-88918484 MsG0180005233.01.T01:intron 40.0%
!!! GGATGTTAGTTTTGCACTAG+AGG + Chr1:88918277-88918296 None:intergenic 40.0%
!!! TGTTAGTTTTGCACTAGAGG+TGG + Chr1:88918274-88918293 None:intergenic 40.0%
AACCCAGCCACCTATATTTC+AGG + Chr1:88920296-88920315 None:intergenic 45.0%
AAGAGTAGAGATGTCCATCC+AGG + Chr1:88919972-88919991 None:intergenic 45.0%
AATGGAGGGAGTTGTTTAGG+AGG + Chr1:88918446-88918465 None:intergenic 45.0%
ACATGAGGAAAGATCTGCTC+AGG - Chr1:88921370-88921389 MsG0180005233.01.T01:intron 45.0%
ACCAGAGAGAATCGAACCTA+AGG - Chr1:88919705-88919724 MsG0180005233.01.T01:intron 45.0%
ACCCAGCCACCTATATTTCA+GGG + Chr1:88920295-88920314 None:intergenic 45.0%
AGGACATGAAAGAGCCAGAA+AGG + Chr1:88919196-88919215 None:intergenic 45.0%
AGGCCTCACATTTGCATTCA+GGG - Chr1:88918938-88918957 MsG0180005233.01.T01:intron 45.0%
ATCCCTGAAATATAGGTGGC+TGG - Chr1:88920290-88920309 MsG0180005233.01.T01:CDS 45.0%
ATGGAGGGAGTTGTTTAGGA+GGG + Chr1:88918445-88918464 None:intergenic 45.0%
CAGTAGCAACAACCATGACT+AGG + Chr1:88919216-88919235 None:intergenic 45.0%
CCACCAAAGATATGGAATGG+AGG + Chr1:88918461-88918480 None:intergenic 45.0%
CCTACCAGTTTCCATCAACT+AGG + Chr1:88920388-88920407 None:intergenic 45.0%
CCTCCATTCCATATCTTTGG+TGG - Chr1:88918458-88918477 MsG0180005233.01.T01:intron 45.0%
CGTTCTCCTTTAGCTGAGAA+AGG + Chr1:88920850-88920869 None:intergenic 45.0%
CTCCCTCCATTCCATATCTT+TGG - Chr1:88918455-88918474 MsG0180005233.01.T01:intron 45.0%
GAAATTCCAACAGTTCCAGG+TGG - Chr1:88921484-88921503 MsG0180005233.01.T01:intron 45.0%
GCAAACGTGTATCAACTGAG+GGG - Chr1:88919450-88919469 MsG0180005233.01.T01:intron 45.0%
GCTCTTTCATGTCCTAGTCA+TGG - Chr1:88919201-88919220 MsG0180005233.01.T01:intron 45.0%
GGACATGAAAGAGCCAGAAA+GGG + Chr1:88919195-88919214 None:intergenic 45.0%
GGGGTATAGTTGGGAAACAA+AGG - Chr1:88918647-88918666 MsG0180005233.01.T01:intron 45.0%
TAGGCCTCACATTTGCATTC+AGG - Chr1:88918937-88918956 MsG0180005233.01.T01:intron 45.0%
TATCAGGCTCGAAGAACGAA+AGG - Chr1:88920817-88920836 MsG0180005233.01.T01:intron 45.0%
TCCCTGAAATATAGGTGGCT+GGG - Chr1:88920291-88920310 MsG0180005233.01.T01:CDS 45.0%
TGCTACAGGATGTGAGTATC+AGG - Chr1:88920801-88920820 MsG0180005233.01.T01:intron 45.0%
TGGAATGGAGGGAGTTGTTT+AGG + Chr1:88918449-88918468 None:intergenic 45.0%
TGTACACAAGTGCCTCATCA+AGG + Chr1:88918183-88918202 None:intergenic 45.0%
TTAACCCACACCCACTTAGT+GGG - Chr1:88920138-88920157 MsG0180005233.01.T01:intron 45.0%
TTATCCCACTAAGTGGGTGT+GGG + Chr1:88920145-88920164 None:intergenic 45.0%
TTGCCCTGAATGCAAATGTG+AGG + Chr1:88918944-88918963 None:intergenic 45.0%
TTTGCAGAAGAGGAAACCCT+TGG - Chr1:88920600-88920619 MsG0180005233.01.T01:intron 45.0%
! ACAAGCCTTATCCCACTAAG+TGG + Chr1:88920152-88920171 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr1:88920151-88920170 None:intergenic 45.0%
! CAGTGACTCTTTTGCAGAAG+AGG - Chr1:88920590-88920609 MsG0180005233.01.T01:intron 45.0%
! CTACCAAACGTTTGGAATGG+AGG - Chr1:88918731-88918750 MsG0180005233.01.T01:intron 45.0%
! GATTCTCTCTGGTGCCAATT+TGG + Chr1:88919698-88919717 None:intergenic 45.0%
! GTCGTCCTTTTCCATCATTG+TGG - Chr1:88922024-88922043 MsG0180005233.01.T01:intron 45.0%
!! AAGAGTAAGTGGTGTTGGCT+TGG + Chr1:88919758-88919777 None:intergenic 45.0%
!! AGAGTAAGTGGTGTTGGCTT+GGG + Chr1:88919757-88919776 None:intergenic 45.0%
!! CCTAGTTGATGGAAACTGGT+AGG - Chr1:88920385-88920404 MsG0180005233.01.T01:intron 45.0%
!!! CGGGTTTTAGTTTCCATCCA+TGG - Chr1:88918085-88918104 MsG0180005233.01.T01:intron 45.0%
!!! TATCTTTTCTAGCTGGCCCA+TGG - Chr1:88920715-88920734 MsG0180005233.01.T01:intron 45.0%
!! TATTCTATAATATATAAATA+GGG - Chr1:88922194-88922213 MsG0180005233.01.T01:intron 5.0%
AAAGACAGGGTGAGCATTCC+TGG - Chr1:88919951-88919970 MsG0180005233.01.T01:intron 50.0%
AGATGAAACCCAACCCACCA+AGG + Chr1:88918153-88918172 None:intergenic 50.0%
CAACTGAGGGGCAAAACTTG+AGG - Chr1:88919462-88919481 MsG0180005233.01.T01:intron 50.0%
CACACCCACTTAGTGGGATA+AGG - Chr1:88920144-88920163 MsG0180005233.01.T01:intron 50.0%
CATCTTGCACTGCCTTGATG+AGG - Chr1:88918168-88918187 MsG0180005233.01.T01:intron 50.0%
CGTTTGCAGCTGACAACTGA+TGG - Chr1:88921458-88921477 MsG0180005233.01.T01:intron 50.0%
CTCCCTCCATTCCAAACGTT+TGG + Chr1:88918737-88918756 None:intergenic 50.0%
CTTATCCCACTAAGTGGGTG+TGG + Chr1:88920146-88920165 None:intergenic 50.0%
GAATCGAACCTAAGGCCTTG+AGG - Chr1:88919713-88919732 MsG0180005233.01.T01:intron 50.0%
GCCTTAGGTTCGATTCTCTC+TGG + Chr1:88919709-88919728 None:intergenic 50.0%
GGAAACTAAAACCCGTGACC+AGG + Chr1:88918080-88918099 None:intergenic 50.0%
GTTAACCCACACCCACTTAG+TGG - Chr1:88920137-88920156 MsG0180005233.01.T01:intron 50.0%
TCAGGGCAATTACTCTCCTC+TGG - Chr1:88918955-88918974 MsG0180005233.01.T01:intron 50.0%
TGAAGAAGGGTAGCATGTCC+TGG - Chr1:88918224-88918243 MsG0180005233.01.T01:CDS 50.0%
TGAGGGGCAAAACTTGAGGA+TGG - Chr1:88919466-88919485 MsG0180005233.01.T01:intron 50.0%
TGGAGGGAGTTGTTTAGGAG+GGG + Chr1:88918444-88918463 None:intergenic 50.0%
TTGAGGAGGAGCAAACTCCA+AGG - Chr1:88919730-88919749 MsG0180005233.01.T01:intron 50.0%
TTGGCTGATCCTAGCACTTC+TGG - Chr1:88921762-88921781 MsG0180005233.01.T01:intron 50.0%
! TGTAGTGGAACACCTGGTCA+CGG - Chr1:88918065-88918084 MsG0180005233.01.T01:intron 50.0%
! TTCGCTTGTAGTGGAACACC+TGG - Chr1:88918059-88918078 MsG0180005233.01.T01:intron 50.0%
! TTGGAGTTTGCTCCTCCTCA+AGG + Chr1:88919731-88919750 None:intergenic 50.0%
!! CGGGCATTGGACTTCCAAAT+AGG + Chr1:88918851-88918870 None:intergenic 50.0%
!! GGTGCCTAGTTGATGGAAAC+TGG - Chr1:88920381-88920400 MsG0180005233.01.T01:intron 50.0%
ACAGGGTGAGCATTCCTGGA+TGG - Chr1:88919955-88919974 MsG0180005233.01.T01:intron 55.0%
ACTGCTTGATCTTTCGCGGG+AGG + Chr1:88920086-88920105 None:intergenic 55.0%
ATCGCTATGCCGGTCACTTC+AGG - Chr1:88922456-88922475 MsG0180005233.01.T01:intron 55.0%
CCTCCCACAGCTCAAAAGCT+GGG - Chr1:88920994-88921013 MsG0180005233.01.T01:intron 55.0%
CGAGCGCTTGAAGAAACAGC+TGG - Chr1:88922402-88922421 MsG0180005233.01.T01:intron 55.0%
GCACTTGTGTACAGAGCTGC+TGG - Chr1:88918190-88918209 MsG0180005233.01.T01:CDS 55.0%
GCAGAAGAGGAAACCCTTGG+TGG - Chr1:88920603-88920622 MsG0180005233.01.T01:intron 55.0%
GGGAGGGGTGAAACAAATGC+AGG + Chr1:88920980-88920999 None:intergenic 55.0%
TCCTCTCTGCCTGAAGTGAC+CGG + Chr1:88922468-88922487 None:intergenic 55.0%
TCGAACCTAAGGCCTTGAGG+AGG - Chr1:88919716-88919735 MsG0180005233.01.T01:intron 55.0%
TTGCTCCTCCTCAAGGCCTT+AGG + Chr1:88919724-88919743 None:intergenic 55.0%
TTTGGAAGTCCAATGCCCGC+TGG - Chr1:88918852-88918871 MsG0180005233.01.T01:intron 55.0%
! AGAGCCCAGCTTTTGAGCTG+TGG + Chr1:88921001-88921020 None:intergenic 55.0%
! CAGCTTTTGAGCTGTGGGAG+GGG + Chr1:88920995-88921014 None:intergenic 55.0%
! CCAGCTTTTGAGCTGTGGGA+GGG + Chr1:88920996-88921015 None:intergenic 55.0%
! GAGCCCAGCTTTTGAGCTGT+GGG + Chr1:88921000-88921019 None:intergenic 55.0%
! GTAGTGGAACACCTGGTCAC+GGG - Chr1:88918066-88918085 MsG0180005233.01.T01:intron 55.0%
CCCTCCCACAGCTCAAAAGC+TGG - Chr1:88920993-88921012 MsG0180005233.01.T01:intron 60.0%
GCTTGATCTTTCGCGGGAGG+TGG + Chr1:88920083-88920102 None:intergenic 60.0%
! CCCAGCTTTTGAGCTGTGGG+AGG + Chr1:88920997-88921016 None:intergenic 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + Chr1:88919750-88919769 None:intergenic 60.0%
GCCGGTCACTTCAGGCAGAG+AGG - Chr1:88922464-88922483 MsG0180005233.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88917204 88922543 88917204 ID=MsG0180005233.01;Name=MsG0180005233.01
Chr1 mRNA 88917204 88922543 88917204 ID=MsG0180005233.01.T01;Parent=MsG0180005233.01;Name=MsG0180005233.01.T01;_AED=0.48;_eAED=0.65;_QI=0|0.36|0.16|1|0.45|0.33|12|0|424
Chr1 exon 88922505 88922543 88922505 ID=MsG0180005233.01.T01:exon:11128;Parent=MsG0180005233.01.T01
Chr1 exon 88922341 88922413 88922341 ID=MsG0180005233.01.T01:exon:11127;Parent=MsG0180005233.01.T01
Chr1 exon 88921826 88921903 88921826 ID=MsG0180005233.01.T01:exon:11126;Parent=MsG0180005233.01.T01
Chr1 exon 88921536 88921598 88921536 ID=MsG0180005233.01.T01:exon:11125;Parent=MsG0180005233.01.T01
Chr1 exon 88920874 88920939 88920874 ID=MsG0180005233.01.T01:exon:11124;Parent=MsG0180005233.01.T01
Chr1 exon 88920227 88920384 88920227 ID=MsG0180005233.01.T01:exon:11123;Parent=MsG0180005233.01.T01
Chr1 exon 88918874 88918938 88918874 ID=MsG0180005233.01.T01:exon:11122;Parent=MsG0180005233.01.T01
Chr1 exon 88918528 88918594 88918528 ID=MsG0180005233.01.T01:exon:11121;Parent=MsG0180005233.01.T01
Chr1 exon 88918187 88918427 88918187 ID=MsG0180005233.01.T01:exon:11120;Parent=MsG0180005233.01.T01
Chr1 exon 88917813 88917901 88917813 ID=MsG0180005233.01.T01:exon:11119;Parent=MsG0180005233.01.T01
Chr1 exon 88917575 88917690 88917575 ID=MsG0180005233.01.T01:exon:11118;Parent=MsG0180005233.01.T01
Chr1 exon 88917204 88917423 88917204 ID=MsG0180005233.01.T01:exon:11117;Parent=MsG0180005233.01.T01
Chr1 CDS 88922505 88922543 88922505 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88922341 88922413 88922341 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88921826 88921903 88921826 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88921536 88921598 88921536 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88920874 88920939 88920874 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88920227 88920384 88920227 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88918874 88918938 88918874 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88918528 88918594 88918528 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88918187 88918427 88918187 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88917813 88917901 88917813 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88917575 88917690 88917575 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Chr1 CDS 88917204 88917423 88917204 ID=MsG0180005233.01.T01:cds;Parent=MsG0180005233.01.T01
Gene Sequence

>MsG0180005233.01.T01

ATGATAACTGAATGTGCTAAGTCGGCTAACATATTAACTAAACCAGTTTCTATTACATTACAGTCATCTAATTCTGCTGATGACAAAGCTATTAGTTCATTCTACAGAAACGCTTTTGCCGTCAGAGATAAGCTTGAGTCACTATGCAGGGAGTTACAGCGTCAAAATAAAATGCTGATGGTATTCTTCTTCCTTGGTGGGTTGGGTTTCATCTTGCACTGCCTTGATGAGGCACTTGTGTACAGAGCTGCTGTTCACTTTCCTGATCATCCAAAAGGTTACTTCTTGAGAAACCTATTTGGAAGTCCAATGCCCGCTGATTCTTATTTATTTTACTTCAAGAGCAACATTTTGACTCTGTTAATGAAAAAACTAGGATTCATGTTCCATTATTTTCAGGAAGAATGCAAACGTGTATCAACTGAGGGGCAAAACTTGAGGATGGACTTGTCAGCTAAGTTCCAAGATGCAATCAAGGATGTGAGTATCAGGCTCGAAGAACGAAAGGATGATTGCCTTTCTCAGCTAAAGGAGAACGACATGTTAAGAAACAATTTAAAGCAACTTGCTGAGCAATATGAACTATCTGAGCAGCAATATGCCCAGAAGTTGAAGCAAAAGTCATTGGAGCTACAGATTGCAGAATTAAAAATTAAGCAACATGAGGAAAGATCTGCTCAGGAACAGTCACAAATGAAATTATATGCAGAACAAGTATCTCAGTTATTGGCGACTGAGAAGAATTTGCGTTTGCAGCTGACAACTGATGGAGAGAAATTCCAACAGTTCCAGGTGGTTTTTTTGTCCTCTTTTTCATTTCAGTCACAATTTGACCACTTTATTATATTATATTGTATGTTTCAAACATGCATTGAATTTCAGGAAGCATTGACAAAGAGCAATGATGTATTTGAAACATTTAAACAAGAGATTGAGAAGATGGCAAAATCAATGAAGGAACTCAAGAAGGAGAATCAATTTTTGAAGAGTAAATCAGAAAAGTCTGATATTACACTTATAGAGTTAGTTGACGAGGTACATTGCTTGCGTTTCCTGTATTCGGTCTCATTGCGGTTCCATATTTTTAAAAATGAATCAACAATGAATTTTTGCTTTTCATTGTCTGAACAGCGCGAGCGCTTGAAGAAACAGCTGGAGAAAACGAAAAATCAAAAAGAAAAACTTGAATCGCTATGCCGGTCACTTCAGGCAGAGAGGAAGCAAAGTTTATCCGAGAACAAGAGTAATAATAGTAACAACTCGGCTCCAATATGA

Protein sequence

>MsG0180005233.01.T01

MITECAKSANILTKPVSITLQSSNSADDKAISSFYRNAFAVRDKLESLCRELQRQNKMLMVFFFLGGLGFILHCLDEALVYRAAVHFPDHPKGYFLRNLFGSPMPADSYLFYFKSNILTLLMKKLGFMFHYFQEECKRVSTEGQNLRMDLSAKFQDAIKDVSIRLEERKDDCLSQLKENDMLRNNLKQLAEQYELSEQQYAQKLKQKSLELQIAELKIKQHEERSAQEQSQMKLYAEQVSQLLATEKNLRLQLTTDGEKFQQFQVVFLSSFSFQSQFDHFIILYCMFQTCIEFQEALTKSNDVFETFKQEIEKMAKSMKELKKENQFLKSKSEKSDITLIELVDEVHCLRFLYSVSLRFHIFKNESTMNFCFSLSEQRERLKKQLEKTKNQKEKLESLCRSLQAERKQSLSENKSNNSNNSAPI*