AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007764.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007764.01.T01 MTR_2g031630 92.442 344 26 0 1 344 1 344 0.0 609
MsG0280007764.01.T01 MTR_2g031630 92.442 344 26 0 1 344 1 344 0.0 608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007764.01.T01 AT1G19980 34.118 340 169 9 14 345 9 301 1.98e-48 167

Find 60 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGTGCAACGATTTAAAA+AGG 0.168184 2:+20229030 None:intergenic
GTGGAATCAATTTAATAAAA+TGG 0.179907 2:-20229302 MsG0280007764.01.T01:CDS
CAGTGACTCTTTCTTTGTTC+AGG 0.215122 2:+20228954 None:intergenic
TACCCTGCTCAGTTCATCTT+TGG 0.230573 2:+20229399 None:intergenic
TTCTGATATTAAACGTTATA+AGG 0.239982 2:-20230811 MsG0280007764.01.T01:CDS
AAATTCCAACGGTCGACTTT+TGG 0.277729 2:+20231098 None:intergenic
TCTACGGCGTTTGAAGGTTT+TGG 0.295363 2:+20230975 None:intergenic
AGAAAGTAAAGTGGCTGATA+TGG 0.336902 2:-20229143 MsG0280007764.01.T01:CDS
AGTGACTCTTTCTTTGTTCA+GGG 0.338941 2:+20228955 None:intergenic
GCAGTCTGAAAATATTAAAA+AGG 0.342062 2:-20229185 MsG0280007764.01.T01:CDS
AATCTGTAGAGCGTGGAAAT+TGG 0.346900 2:-20230953 MsG0280007764.01.T01:CDS
GGTTCAGATGATGAAGAATC+AGG 0.362544 2:-20230910 MsG0280007764.01.T01:CDS
ATCTGTAGAGCGTGGAAATT+GGG 0.376472 2:-20230952 MsG0280007764.01.T01:CDS
AGTTCATCTTTGGTTTCATC+AGG 0.393750 2:+20229409 None:intergenic
GGAACGCCATTGAAGGATAT+TGG 0.395267 2:-20229505 MsG0280007764.01.T01:CDS
AGAGAGTACAAAGGATGATT+TGG 0.418152 2:-20229666 MsG0280007764.01.T01:CDS
ACATCAAATAACAGTGATAC+TGG 0.422056 2:-20229013 MsG0280007764.01.T01:CDS
AGATTAAACAAGGAAATATC+AGG 0.427351 2:-20229106 MsG0280007764.01.T01:CDS
CTCCACAAATTTCTCAGAAA+AGG 0.435679 2:-20228906 MsG0280007764.01.T01:CDS
CGCATCGTGTGATGCAGAAT+AGG 0.438445 2:+20231011 None:intergenic
CTGGAAAAGTTGAGAGTAGC+AGG 0.440032 2:-20228994 MsG0280007764.01.T01:CDS
TAAACAAGAAGAAGTAGAAA+AGG 0.440876 2:-20229251 MsG0280007764.01.T01:CDS
TATCCTTCAATGGCGTTCCT+TGG 0.446051 2:+20229509 None:intergenic
TTCTGAGAAATTTGTGGAGG+TGG 0.449334 2:+20228910 None:intergenic
AAAACATACTTCTCCATTCG+AGG 0.451403 2:+20229604 None:intergenic
ACAGATTCTACGGCGTTTGA+AGG 0.453164 2:+20230969 None:intergenic
AGCTAAGGCTGATTTGATGA+TGG 0.458362 2:-20230634 MsG0280007764.01.T01:CDS
GAGGTGGAAGCATGTTCATC+AGG 0.475857 2:+20228926 None:intergenic
TAAGCAGATAGCAAAAGAAC+GGG 0.476280 2:+20228872 None:intergenic
CTCTTGCCAATATCCTTCAA+TGG 0.498953 2:+20229499 None:intergenic
TGATGTTTGAAGAGAAGAAA+CGG 0.503982 2:-20230668 MsG0280007764.01.T01:CDS
GATATTGGCAAGAGGAAGAA+AGG 0.506768 2:-20229490 MsG0280007764.01.T01:CDS
CTTCTTCTTCCCACTACTTG+AGG 0.508521 2:+20229465 None:intergenic
AAACCAAAGATGAACTGAGC+AGG 0.509542 2:-20229402 MsG0280007764.01.T01:CDS
AAGAAAGGAACCTCAAGTAG+TGG 0.509613 2:-20229475 MsG0280007764.01.T01:CDS
GAGTACAAAGGATGATTTGG+AGG 0.515610 2:-20229663 MsG0280007764.01.T01:CDS
GGACCAAGGAACGCCATTGA+AGG 0.522380 2:-20229512 MsG0280007764.01.T01:CDS
AAACATACTTGTTTCTAGCA+TGG 0.526753 2:-20229215 MsG0280007764.01.T01:CDS
GCTAAGGCTGATTTGATGAT+GGG 0.535120 2:-20230633 MsG0280007764.01.T01:CDS
TCCACGCTCTACAGATTCTA+CGG 0.536952 2:+20230959 None:intergenic
ATAAGCAGATAGCAAAAGAA+CGG 0.545285 2:+20228871 None:intergenic
ACGGTTGCTTGAAGAAGCTA+AGG 0.550968 2:-20230649 MsG0280007764.01.T01:CDS
GACTCTTTCTTTGTTCAGGG+TGG 0.557615 2:+20228958 None:intergenic
AAAATTGCAGAATCAACGCT+GGG 0.563347 2:-20230835 MsG0280007764.01.T01:CDS
TAAAATTGCAGAATCAACGC+TGG 0.563506 2:-20230836 MsG0280007764.01.T01:CDS
ATCTGAGTTAGAAAGTAAAG+TGG 0.569525 2:-20229152 MsG0280007764.01.T01:CDS
CTGAACAAAGAAAGAGTCAC+TGG 0.570948 2:-20228953 MsG0280007764.01.T01:CDS
ATCATTTAATACATACAGTA+CGG 0.572842 2:+20228845 None:intergenic
TAAAGTGGCTGATATGGATG+TGG 0.585649 2:-20229137 MsG0280007764.01.T01:CDS
AAACGCCAAAAGTCGACCGT+TGG 0.590442 2:-20231103 None:intergenic
AGAAAGGAACCTCAAGTAGT+GGG 0.601571 2:-20229474 MsG0280007764.01.T01:CDS
TTATAAGGATCAAATTACTC+AGG 0.623873 2:-20230796 MsG0280007764.01.T01:intron
AACCAAAGATGAACTGAGCA+GGG 0.624655 2:-20229401 MsG0280007764.01.T01:CDS
GCCGTAGAATCTGTAGAGCG+TGG 0.627881 2:-20230960 MsG0280007764.01.T01:CDS
CATACTTGTTTCTAGCATGG+AGG 0.643179 2:-20229212 MsG0280007764.01.T01:CDS
GTTACTTTATAACAGGACCA+AGG 0.660017 2:-20229526 MsG0280007764.01.T01:intron
GGAAATATCAGGACTCTCAG+CGG 0.661029 2:-20229095 MsG0280007764.01.T01:CDS
CATTGAAGGATATTGGCAAG+AGG 0.663713 2:-20229498 MsG0280007764.01.T01:CDS
AAGAAGCAGTAAAATTCCAA+CGG 0.666085 2:+20231087 None:intergenic
TTTGACTGCAGAGAGTACAA+AGG 0.671398 2:-20229675 MsG0280007764.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTAATAACTAATAAAA+AGG + Chr2:20230383-20230402 None:intergenic 10.0%
!!! TTTCATGTTTTTTTATTAAT+TGG - Chr2:20229392-20229411 MsG0280007764.01.T01:CDS 10.0%
!! GAATATTTGTATAGAAATTT+AGG - Chr2:20229570-20229589 MsG0280007764.01.T01:intron 15.0%
!! TAAAAAAACATGAAAGAAAA+AGG + Chr2:20229387-20229406 None:intergenic 15.0%
!!! AAAAAGAATGGTTTTTTTAA+TGG - Chr2:20229221-20229240 MsG0280007764.01.T01:CDS 15.0%
!!! AAAAGAATGGTTTTTTTAAT+GGG - Chr2:20229222-20229241 MsG0280007764.01.T01:CDS 15.0%
!!! ATGTTTTTTTATTAATTGGT+TGG - Chr2:20229396-20229415 MsG0280007764.01.T01:CDS 15.0%
!!! TGGATTGTTTTATAAAATAA+TGG - Chr2:20229659-20229678 MsG0280007764.01.T01:CDS 15.0%
!! AAAAACACTAATACTTTGTT+TGG + Chr2:20230177-20230196 None:intergenic 20.0%
!! GTGGAATCAATTTAATAAAA+TGG - Chr2:20230644-20230663 MsG0280007764.01.T01:CDS 20.0%
!! TTCTGATATTAAACGTTATA+AGG - Chr2:20229135-20229154 MsG0280007764.01.T01:CDS 20.0%
!!! AGAATCTTCTATTTTGAAAT+GGG - Chr2:20229348-20229367 MsG0280007764.01.T01:CDS 20.0%
!!! ATTCAACAATTTCAGTTTTA+GGG - Chr2:20229176-20229195 MsG0280007764.01.T01:CDS 20.0%
!!! TAATTGGTTGGTTTTTAAAT+AGG - Chr2:20229408-20229427 MsG0280007764.01.T01:CDS 20.0%
!!! TATGTTTTCTGATATTTATC+AGG - Chr2:20230357-20230376 MsG0280007764.01.T01:intron 20.0%
!!! TATTCAACAATTTCAGTTTT+AGG - Chr2:20229175-20229194 MsG0280007764.01.T01:CDS 20.0%
!!! TTTTGTTGTTGAAAAAAGAA+TGG - Chr2:20229209-20229228 MsG0280007764.01.T01:CDS 20.0%
! AAAAAACCGATCAAACAATA+AGG + Chr2:20230034-20230053 None:intergenic 25.0%
! ACTGTTGGTCAAATTATTAT+CGG - Chr2:20229802-20229821 MsG0280007764.01.T01:intron 25.0%
! AGAAATTAGTAAATTCAACG+TGG - Chr2:20230149-20230168 MsG0280007764.01.T01:intron 25.0%
! AGATTAAACAAGGAAATATC+AGG - Chr2:20230840-20230859 MsG0280007764.01.T01:CDS 25.0%
! GAAATACCTTATTGTTTGAT+CGG - Chr2:20230025-20230044 MsG0280007764.01.T01:intron 25.0%
! GCAGTCTGAAAATATTAAAA+AGG - Chr2:20230761-20230780 MsG0280007764.01.T01:intron 25.0%
! GGAAACAAAAAGATTAAACA+AGG - Chr2:20230830-20230849 MsG0280007764.01.T01:CDS 25.0%
! TAAACAAGAAGAAGTAGAAA+AGG - Chr2:20230695-20230714 MsG0280007764.01.T01:intron 25.0%
! TAATTTCACTTTCTAAGCTA+AGG + Chr2:20229868-20229887 None:intergenic 25.0%
! TACAAATATTCAAACCGATA+AGG + Chr2:20229561-20229580 None:intergenic 25.0%
! TGAAATTATCCTATCAATCT+TGG - Chr2:20229880-20229899 MsG0280007764.01.T01:intron 25.0%
! TTATAAGGATCAAATTACTC+AGG - Chr2:20229150-20229169 MsG0280007764.01.T01:CDS 25.0%
! TTCTATAACCCAAAATCAAA+GGG + Chr2:20229451-20229470 None:intergenic 25.0%
! TTTCTATAACCCAAAATCAA+AGG + Chr2:20229452-20229471 None:intergenic 25.0%
! TTTGATGTTATGTTCCTTAT+CGG - Chr2:20229544-20229563 MsG0280007764.01.T01:intron 25.0%
!!! GAGAATCTTCTATTTTGAAA+TGG - Chr2:20229347-20229366 MsG0280007764.01.T01:CDS 25.0%
!!! TCTATTTTGAAATGGGTTTT+GGG - Chr2:20229355-20229374 MsG0280007764.01.T01:CDS 25.0%
!!! TTCTATTTTGAAATGGGTTT+TGG - Chr2:20229354-20229373 MsG0280007764.01.T01:CDS 25.0%
AAGAAGCAGTAAAATTCCAA+CGG + Chr2:20228862-20228881 None:intergenic 30.0%
AAGGTAAGTCTTAATGTAAC+TGG + Chr2:20229737-20229756 None:intergenic 30.0%
AATCCAACAAGAATAACAAC+AGG + Chr2:20229645-20229664 None:intergenic 30.0%
ACATCAAATAACAGTGATAC+TGG - Chr2:20230933-20230952 MsG0280007764.01.T01:CDS 30.0%
ACCTCAGCAAATAGTTTAAA+AGG + Chr2:20230207-20230226 None:intergenic 30.0%
ATAAGCAGATAGCAAAAGAA+CGG + Chr2:20231078-20231097 None:intergenic 30.0%
ATCTGAGTTAGAAAGTAAAG+TGG - Chr2:20230794-20230813 MsG0280007764.01.T01:intron 30.0%
GATGTGCAACGATTTAAAAA+GGG + Chr2:20230918-20230937 None:intergenic 30.0%
GGAAAAAATATTCAGCACTT+TGG - Chr2:20229015-20229034 MsG0280007764.01.T01:CDS 30.0%
TAACTAAAAACACACGTTCT+AGG + Chr2:20230093-20230112 None:intergenic 30.0%
TCTCAATATCACTTCCAAAT+TGG - Chr2:20230116-20230135 MsG0280007764.01.T01:intron 30.0%
TGATGTGCAACGATTTAAAA+AGG + Chr2:20230919-20230938 None:intergenic 30.0%
TGATGTTTGAAGAGAAGAAA+CGG - Chr2:20229278-20229297 MsG0280007764.01.T01:CDS 30.0%
TTATCCTATCAATCTTGGAA+TGG - Chr2:20229885-20229904 MsG0280007764.01.T01:intron 30.0%
! CTGAGAAGTTACTTTATAAC+AGG - Chr2:20230413-20230432 MsG0280007764.01.T01:intron 30.0%
! CTTTTCTTTCTCTGCAATTT+TGG + Chr2:20230514-20230533 None:intergenic 30.0%
! TGCAAGAAAAGAATTTTGTG+TGG - Chr2:20230625-20230644 MsG0280007764.01.T01:CDS 30.0%
!! AAACATACTTGTTTCTAGCA+TGG - Chr2:20230731-20230750 MsG0280007764.01.T01:intron 30.0%
!! AAATAGGTTGGGTTTTTGAT+GGG - Chr2:20229424-20229443 MsG0280007764.01.T01:CDS 30.0%
!! ACCTTTTAAACTATTTGCTG+AGG - Chr2:20230203-20230222 MsG0280007764.01.T01:intron 30.0%
!! TAAATAGGTTGGGTTTTTGA+TGG - Chr2:20229423-20229442 MsG0280007764.01.T01:CDS 30.0%
!! TACCTTTTCTGAGAAATTTG+TGG + Chr2:20231045-20231064 None:intergenic 30.0%
!!! ATTTGGAGGATTTTAAAGCT+GGG - Chr2:20230297-20230316 MsG0280007764.01.T01:intron 30.0%
!!! GGTTGGTTTTTAAATAGGTT+GGG - Chr2:20229413-20229432 MsG0280007764.01.T01:CDS 30.0%
!!! TGGTTGGTTTTTAAATAGGT+TGG - Chr2:20229412-20229431 MsG0280007764.01.T01:CDS 30.0%
!!! TGTCTTGTTGTTTTTGTTCT+TGG - Chr2:20229507-20229526 MsG0280007764.01.T01:CDS 30.0%
AAAACATACTTCTCCATTCG+AGG + Chr2:20230345-20230364 None:intergenic 35.0%
AAAATTGCAGAATCAACGCT+GGG - Chr2:20229111-20229130 MsG0280007764.01.T01:CDS 35.0%
AACCACATAACTGTAAGAGT+TGG - Chr2:20229992-20230011 MsG0280007764.01.T01:intron 35.0%
ACACCTTCTATCATAAGTGT+AGG + Chr2:20229770-20229789 None:intergenic 35.0%
AGAAAGTAAAGTGGCTGATA+TGG - Chr2:20230803-20230822 MsG0280007764.01.T01:CDS 35.0%
AGTGACTCTTTCTTTGTTCA+GGG + Chr2:20230994-20231013 None:intergenic 35.0%
ATTATGAAGCAGCAGAAAAC+TGG - Chr2:20229598-20229617 MsG0280007764.01.T01:intron 35.0%
CTCCACAAATTTCTCAGAAA+AGG - Chr2:20231040-20231059 MsG0280007764.01.T01:five_prime_UTR 35.0%
CTTTCTCAAAAATCCTCGAA+TGG - Chr2:20230329-20230348 MsG0280007764.01.T01:intron 35.0%
GTACCTACACTTATGATAGA+AGG - Chr2:20229764-20229783 MsG0280007764.01.T01:intron 35.0%
TAAAATTGCAGAATCAACGC+TGG - Chr2:20229110-20229129 MsG0280007764.01.T01:CDS 35.0%
TAAGCAGATAGCAAAAGAAC+GGG + Chr2:20231077-20231096 None:intergenic 35.0%
TATCACTTCCAAATTGGCAT+TGG - Chr2:20230122-20230141 MsG0280007764.01.T01:intron 35.0%
! AATAAGGTATTTCACCACCA+AGG + Chr2:20230018-20230037 None:intergenic 35.0%
! AGAGAGTACAAAGGATGATT+TGG - Chr2:20230280-20230299 MsG0280007764.01.T01:intron 35.0%
! AGTCCTGTTGTTATTCTTGT+TGG - Chr2:20229639-20229658 MsG0280007764.01.T01:CDS 35.0%
! AGTTCATCTTTGGTTTCATC+AGG + Chr2:20230540-20230559 None:intergenic 35.0%
! GTTACTTTATAACAGGACCA+AGG - Chr2:20230420-20230439 MsG0280007764.01.T01:intron 35.0%
!! CATTCGAGGATTTTTGAGAA+AGG + Chr2:20230331-20230350 None:intergenic 35.0%
!! CTTTTCTGAGAAATTTGTGG+AGG + Chr2:20231042-20231061 None:intergenic 35.0%
!!! GATTTGGAGGATTTTAAAGC+TGG - Chr2:20230296-20230315 MsG0280007764.01.T01:intron 35.0%
AAACCAAAGATGAACTGAGC+AGG - Chr2:20230544-20230563 MsG0280007764.01.T01:intron 40.0%
AACCAAAGATGAACTGAGCA+GGG - Chr2:20230545-20230564 MsG0280007764.01.T01:intron 40.0%
AAGAAAGGAACCTCAAGTAG+TGG - Chr2:20230471-20230490 MsG0280007764.01.T01:intron 40.0%
AAGTGTAGGTACTACAGAGA+AGG + Chr2:20229756-20229775 None:intergenic 40.0%
AATCTGTAGAGCGTGGAAAT+TGG - Chr2:20228993-20229012 MsG0280007764.01.T01:CDS 40.0%
AGAAAGGAACCTCAAGTAGT+GGG - Chr2:20230472-20230491 MsG0280007764.01.T01:intron 40.0%
ATCTGTAGAGCGTGGAAATT+GGG - Chr2:20228994-20229013 MsG0280007764.01.T01:CDS 40.0%
ATCTTGGAATGGTCACTGAT+AGG - Chr2:20229896-20229915 MsG0280007764.01.T01:intron 40.0%
CAGTGACTCTTTCTTTGTTC+AGG + Chr2:20230995-20231014 None:intergenic 40.0%
CATTGAAGGATATTGGCAAG+AGG - Chr2:20230448-20230467 MsG0280007764.01.T01:intron 40.0%
CCTACTGTGAAAACAAACAC+TGG + Chr2:20230066-20230085 None:intergenic 40.0%
CTCTTGCCAATATCCTTCAA+TGG + Chr2:20230450-20230469 None:intergenic 40.0%
CTGAACAAAGAAAGAGTCAC+TGG - Chr2:20230993-20231012 MsG0280007764.01.T01:CDS 40.0%
GATATTGGCAAGAGGAAGAA+AGG - Chr2:20230456-20230475 MsG0280007764.01.T01:intron 40.0%
GGTTCAGATGATGAAGAATC+AGG - Chr2:20229036-20229055 MsG0280007764.01.T01:CDS 40.0%
GTGACCATTCCAAGATTGAT+AGG + Chr2:20229892-20229911 None:intergenic 40.0%
TAAAGTGGCTGATATGGATG+TGG - Chr2:20230809-20230828 MsG0280007764.01.T01:CDS 40.0%
TGTTGTTGTAGCACACTTCT+AGG - Chr2:20229945-20229964 MsG0280007764.01.T01:intron 40.0%
TTCTCGTACCAATGCCAATT+TGG + Chr2:20230133-20230152 None:intergenic 40.0%
! ATAACTGTAAGAGTTGGCCT+TGG - Chr2:20229998-20230017 MsG0280007764.01.T01:intron 40.0%
! CTTATGATAGAAGGTGTGTC+CGG - Chr2:20229773-20229792 MsG0280007764.01.T01:intron 40.0%
! GAGTACAAAGGATGATTTGG+AGG - Chr2:20230283-20230302 MsG0280007764.01.T01:intron 40.0%
! TTCTGAGAAATTTGTGGAGG+TGG + Chr2:20231039-20231058 None:intergenic 40.0%
! TTTGACTGCAGAGAGTACAA+AGG - Chr2:20230271-20230290 MsG0280007764.01.T01:intron 40.0%
!! AGCTAAGGCTGATTTGATGA+TGG - Chr2:20229312-20229331 MsG0280007764.01.T01:CDS 40.0%
!! CATACTTGTTTCTAGCATGG+AGG - Chr2:20230734-20230753 MsG0280007764.01.T01:intron 40.0%
!! CCAGTGTTTGTTTTCACAGT+AGG - Chr2:20230063-20230082 MsG0280007764.01.T01:intron 40.0%
!! GCTAAGGCTGATTTGATGAT+GGG - Chr2:20229313-20229332 MsG0280007764.01.T01:CDS 40.0%
!! TGATGGGTCCCTTTGATTTT+GGG - Chr2:20229440-20229459 MsG0280007764.01.T01:CDS 40.0%
!! TTGATGGGTCCCTTTGATTT+TGG - Chr2:20229439-20229458 MsG0280007764.01.T01:CDS 40.0%
ACAGATTCTACGGCGTTTGA+AGG + Chr2:20228980-20228999 None:intergenic 45.0%
ACGGTTGCTTGAAGAAGCTA+AGG - Chr2:20229297-20229316 MsG0280007764.01.T01:CDS 45.0%
CTGGAAAAGTTGAGAGTAGC+AGG - Chr2:20230952-20230971 MsG0280007764.01.T01:CDS 45.0%
CTTCTTCTTCCCACTACTTG+AGG + Chr2:20230484-20230503 None:intergenic 45.0%
GACTCTTTCTTTGTTCAGGG+TGG + Chr2:20230991-20231010 None:intergenic 45.0%
GGAAATATCAGGACTCTCAG+CGG - Chr2:20230851-20230870 MsG0280007764.01.T01:CDS 45.0%
GGAACGCCATTGAAGGATAT+TGG - Chr2:20230441-20230460 MsG0280007764.01.T01:intron 45.0%
GGCCAACTCTTACAGTTATG+TGG + Chr2:20229997-20230016 None:intergenic 45.0%
TACCCTGCTCAGTTCATCTT+TGG + Chr2:20230550-20230569 None:intergenic 45.0%
TATCCTTCAATGGCGTTCCT+TGG + Chr2:20230440-20230459 None:intergenic 45.0%
TCCACGCTCTACAGATTCTA+CGG + Chr2:20228990-20229009 None:intergenic 45.0%
TGAAGCAGCAGAAAACTGGT+CGG - Chr2:20229602-20229621 MsG0280007764.01.T01:intron 45.0%
TGTGCTACAACAACAGTCAG+TGG + Chr2:20229940-20229959 None:intergenic 45.0%
TTTGACCAACAGTGAGACTC+CGG + Chr2:20229795-20229814 None:intergenic 45.0%
! TCTACGGCGTTTGAAGGTTT+TGG + Chr2:20228974-20228993 None:intergenic 45.0%
!!! TTTGTTATTTTAATTTTAAA+TGG - Chr2:20229691-20229710 MsG0280007764.01.T01:intron 5.0%
CGCATCGTGTGATGCAGAAT+AGG + Chr2:20228938-20228957 None:intergenic 50.0%
! GAGGTGGAAGCATGTTCATC+AGG + Chr2:20231023-20231042 None:intergenic 50.0%
!! ACTGTAAGAGTTGGCCTTGG+TGG - Chr2:20230001-20230020 MsG0280007764.01.T01:intron 50.0%
GCCGTAGAATCTGTAGAGCG+TGG - Chr2:20228986-20229005 MsG0280007764.01.T01:CDS 55.0%
GGACCAAGGAACGCCATTGA+AGG - Chr2:20230434-20230453 MsG0280007764.01.T01:intron 55.0%
TGTGTCCGGAGTCTCACTGT+TGG - Chr2:20229787-20229806 MsG0280007764.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20228850 20231118 20228850 ID=MsG0280007764.01;Name=MsG0280007764.01
Chr2 mRNA 20228850 20231118 20228850 ID=MsG0280007764.01.T01;Parent=MsG0280007764.01;Name=MsG0280007764.01.T01;_AED=0.29;_eAED=0.29;_QI=103|1|0.75|1|1|1|4|0|362
Chr2 exon 20228850 20229533 20228850 ID=MsG0280007764.01.T01:exon:10432;Parent=MsG0280007764.01.T01
Chr2 exon 20229613 20229686 20229613 ID=MsG0280007764.01.T01:exon:10431;Parent=MsG0280007764.01.T01
Chr2 exon 20230592 20230703 20230592 ID=MsG0280007764.01.T01:exon:10430;Parent=MsG0280007764.01.T01
Chr2 exon 20230797 20231118 20230797 ID=MsG0280007764.01.T01:exon:10429;Parent=MsG0280007764.01.T01
Chr2 five_prime_UTR 20231016 20231118 20231016 ID=MsG0280007764.01.T01:five_prime_utr;Parent=MsG0280007764.01.T01
Chr2 CDS 20230797 20231015 20230797 ID=MsG0280007764.01.T01:cds;Parent=MsG0280007764.01.T01
Chr2 CDS 20230592 20230703 20230592 ID=MsG0280007764.01.T01:cds;Parent=MsG0280007764.01.T01
Chr2 CDS 20229613 20229686 20229613 ID=MsG0280007764.01.T01:cds;Parent=MsG0280007764.01.T01
Chr2 CDS 20228850 20229533 20228850 ID=MsG0280007764.01.T01:cds;Parent=MsG0280007764.01.T01
Gene Sequence

>MsG0280007764.01.T01

ATGCGTAAATCGAAAAAACCAAAACCTTCAAACGCCGTAGAATCTGTAGAGCGTGGAAATTGGGAAAAAATATTCAGCACTTTGGTTCAGATGATGAAGAATCAGGAAAAGCAACTTCAATCATTCGCTGATCAACAGAACTTTCTACAAGATCGCTTAAAATTGCAGAATCAACGCTGGGCTTCTGATATTAAACGTTATAAGGATCAAATTACTCAGATGAAGACGTTTTTGATGTTTGAAGAGAAGAAACGGTTGCTTGAAGAAGCTAAGGCTGATTTGATGATGGGTTCTAAGCATAGAGAATCTTCTATTTTGAAATGGGTTTTGGAGAGTACAAAGGATGATTTGGAGGATTTTAAAGCTGGGTTTGATTACCTTTCTCAAAAATCCTCGAATGGAGAAGACCAAGGAACGCCATTGAAGGATATTGGCAAGAGGAAGAAAGGAACCTCAAGTAGTGGGAAGAAGAAGTCTTCTTCCAAAATTGCAGAGAAAGAAAAGTGTCCTGATGAAACCAAAGATGAACTGAGCAGGGTAAAAGCTGAATGTGAGAAGCTTGTTGCAGAAAAAGATTCTGAGTTATTAGCGCTCTTGCAAGAAAAGAATTTTGTGTGGAATCAATTTAATAAAATGGAGACTGACTACACTAAGAAATTGAGAAGTAAACAAGAAGAAGTAGAAAAGGCAAATGAGAAGATAAACATACTTGTTTCTAGCATGGAGGAAATGCAGTCTGAAAATATTAAAAAGGATAGTAAAATATCTGAGTTAGAAAGTAAAGTGGCTGATATGGATGTGGAAACAAAAAGATTAAACAAGGAAATATCAGGACTCTCAGCGGAATTGCAATCTTTAAGAAAGTTGAAGAGCAGCGAAGTTAAACCCTTTTTAAATCGTTGCACATCAAATAACAGTGATACTGGAAAAGTTGAGAGTAGCAGGAGTAGAAGAAACACCACCCTGAACAAAGAAAGAGTCACTGGTACTCCTGATGAACATGCTTCCACCTCCACAAATTTCTCAGAAAAGGTAATCTCATCTCCCGTTCTTTTGCTATCTGCTTATCTTCCGTACTGTATGTATTAA

Protein sequence

>MsG0280007764.01.T01

MRKSKKPKPSNAVESVERGNWEKIFSTLVQMMKNQEKQLQSFADQQNFLQDRLKLQNQRWASDIKRYKDQITQMKTFLMFEEKKRLLEEAKADLMMGSKHRESSILKWVLESTKDDLEDFKAGFDYLSQKSSNGEDQGTPLKDIGKRKKGTSSSGKKKSSSKIAEKEKCPDETKDELSRVKAECEKLVAEKDSELLALLQEKNFVWNQFNKMETDYTKKLRSKQEEVEKANEKINILVSSMEEMQSENIKKDSKISELESKVADMDVETKRLNKEISGLSAELQSLRKLKSSEVKPFLNRCTSNNSDTGKVESSRSRRNTTLNKERVTGTPDEHASTSTNFSEKVISSPVLLLSAYLPYCMY*