Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046438.01.T01 | RHN63634.1 | 68.482 | 257 | 37 | 5 | 8 | 235 | 115 | 356 | 7.31E-111 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046438.01.T01 | Q9STT7 | 58.527 | 258 | 61 | 5 | 8 | 235 | 597 | 838 | 2.79E-83 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046438.01.T01 | A0A396IH78 | 68.482 | 257 | 37 | 5 | 8 | 235 | 115 | 356 | 3.49e-111 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000470.01 | MsG0880046438.01 | 0.820364 | 7.133270e-53 | 5.632607e-50 |
| MsG0880044821.01 | MsG0880046438.01 | 0.827493 | 1.517899e-54 | 1.467720e-51 |
| MsG0480019435.01 | MsG0880046438.01 | 0.801490 | 8.784499e-49 | 4.200725e-46 |
| MsG0480022068.01 | MsG0880046438.01 | 0.806585 | 7.657374e-50 | 4.171834e-47 |
| MsG0580027833.01 | MsG0880046438.01 | 0.803827 | 2.894597e-49 | 1.469254e-46 |
| MsG0280006770.01 | MsG0880046438.01 | 0.806848 | 6.739428e-50 | 3.696789e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046438.01.T01 | MTR_4g108170 | 68.482 | 257 | 37 | 4 | 8 | 235 | 580 | 821 | 1.20e-110 | 340 |
| MsG0880046438.01.T01 | MTR_4g108163 | 68.482 | 257 | 37 | 5 | 8 | 235 | 583 | 824 | 2.38e-109 | 337 |
| MsG0880046438.01.T01 | MTR_4g108240 | 65.314 | 271 | 48 | 5 | 8 | 249 | 595 | 848 | 3.10e-108 | 334 |
| MsG0880046438.01.T01 | MTR_4g108210 | 68.093 | 257 | 21 | 5 | 8 | 235 | 213 | 437 | 1.28e-107 | 322 |
| MsG0880046438.01.T01 | MTR_4g108153 | 63.424 | 257 | 50 | 4 | 8 | 235 | 553 | 794 | 4.11e-102 | 317 |
| MsG0880046438.01.T01 | MTR_3g437870 | 62.257 | 257 | 53 | 4 | 8 | 235 | 600 | 841 | 1.03e-97 | 306 |
| MsG0880046438.01.T01 | MTR_4g108240 | 64.317 | 227 | 37 | 4 | 8 | 205 | 595 | 806 | 9.86e-86 | 272 |
| MsG0880046438.01.T01 | MTR_4g108240 | 65.972 | 144 | 35 | 3 | 8 | 141 | 595 | 734 | 1.83e-54 | 187 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.341 | 249 | 119 | 8 | 16 | 235 | 1266 | 1501 | 1.81e-35 | 134 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.294 | 221 | 117 | 7 | 29 | 231 | 376 | 588 | 4.51e-21 | 93.2 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.341 | 249 | 119 | 8 | 16 | 235 | 1448 | 1683 | 1.83e-35 | 134 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.294 | 221 | 117 | 7 | 29 | 231 | 558 | 770 | 4.52e-21 | 93.2 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.341 | 249 | 119 | 8 | 16 | 235 | 1246 | 1481 | 1.84e-35 | 134 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.294 | 221 | 117 | 7 | 29 | 231 | 356 | 568 | 4.72e-21 | 92.8 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.341 | 249 | 119 | 8 | 16 | 235 | 1448 | 1683 | 2.30e-35 | 134 |
| MsG0880046438.01.T01 | MTR_7g091380 | 35.294 | 221 | 117 | 7 | 29 | 231 | 558 | 770 | 4.69e-21 | 93.2 |
| MsG0880046438.01.T01 | MTR_3g437990 | 35.749 | 207 | 107 | 7 | 45 | 231 | 544 | 744 | 2.45e-28 | 114 |
| MsG0880046438.01.T01 | MTR_3g099990 | 35.577 | 208 | 106 | 8 | 45 | 231 | 544 | 744 | 1.94e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046438.01.T01 | AT3G47760 | 58.527 | 258 | 61 | 5 | 8 | 235 | 597 | 838 | 2.85e-84 | 270 |
| MsG0880046438.01.T01 | AT3G47740 | 56.809 | 257 | 67 | 5 | 8 | 235 | 593 | 834 | 1.65e-83 | 268 |
| MsG0880046438.01.T01 | AT3G47780 | 56.809 | 257 | 67 | 5 | 8 | 235 | 596 | 837 | 5.69e-83 | 267 |
| MsG0880046438.01.T01 | AT3G47760 | 55.805 | 267 | 69 | 6 | 2 | 235 | 558 | 808 | 5.23e-82 | 264 |
| MsG0880046438.01.T01 | AT3G47760 | 55.805 | 267 | 69 | 6 | 2 | 235 | 548 | 798 | 6.22e-82 | 263 |
| MsG0880046438.01.T01 | AT5G61740 | 56.420 | 257 | 68 | 4 | 8 | 235 | 431 | 672 | 6.71e-82 | 261 |
| MsG0880046438.01.T01 | AT3G47790 | 53.282 | 259 | 77 | 4 | 6 | 235 | 567 | 810 | 3.28e-81 | 262 |
| MsG0880046438.01.T01 | AT5G61740 | 56.420 | 257 | 68 | 4 | 8 | 235 | 536 | 777 | 5.23e-81 | 261 |
| MsG0880046438.01.T01 | AT5G61740 | 56.420 | 257 | 68 | 4 | 8 | 235 | 570 | 811 | 8.37e-81 | 261 |
| MsG0880046438.01.T01 | AT3G47770 | 55.642 | 257 | 70 | 5 | 8 | 235 | 593 | 834 | 2.78e-80 | 259 |
| MsG0880046438.01.T01 | AT3G47770 | 55.642 | 257 | 70 | 5 | 8 | 235 | 567 | 808 | 3.46e-80 | 259 |
| MsG0880046438.01.T01 | AT3G47750 | 56.420 | 257 | 68 | 5 | 8 | 235 | 598 | 839 | 9.59e-80 | 258 |
| MsG0880046438.01.T01 | AT5G61700 | 55.253 | 257 | 71 | 5 | 8 | 235 | 578 | 819 | 4.14e-79 | 256 |
| MsG0880046438.01.T01 | AT3G47790 | 48.696 | 230 | 74 | 4 | 6 | 206 | 448 | 662 | 8.45e-61 | 203 |
| MsG0880046438.01.T01 | AT3G47790 | 48.696 | 230 | 74 | 4 | 6 | 206 | 567 | 781 | 6.72e-60 | 202 |
| MsG0880046438.01.T01 | AT5G61700 | 49.791 | 239 | 75 | 6 | 8 | 216 | 578 | 801 | 1.41e-59 | 202 |
| MsG0880046438.01.T01 | AT5G61700 | 49.791 | 239 | 75 | 6 | 8 | 216 | 578 | 801 | 1.41e-59 | 202 |
| MsG0880046438.01.T01 | AT5G61700 | 54.962 | 131 | 47 | 2 | 8 | 128 | 578 | 706 | 1.06e-36 | 138 |
| MsG0880046438.01.T01 | AT2G41700 | 36.777 | 242 | 112 | 8 | 22 | 235 | 1450 | 1678 | 3.55e-36 | 137 |
| MsG0880046438.01.T01 | AT2G41700 | 36.444 | 225 | 117 | 7 | 25 | 231 | 549 | 765 | 1.45e-23 | 100 |
| MsG0880046438.01.T01 | AT2G41700 | 36.777 | 242 | 112 | 8 | 22 | 235 | 1408 | 1636 | 4.20e-36 | 136 |
| MsG0880046438.01.T01 | AT2G41700 | 36.444 | 225 | 117 | 7 | 25 | 231 | 479 | 695 | 1.80e-23 | 100 |
| MsG0880046438.01.T01 | AT3G47770 | 61.856 | 97 | 37 | 0 | 8 | 104 | 593 | 689 | 3.10e-34 | 130 |
| MsG0880046438.01.T01 | AT5G61730 | 34.310 | 239 | 121 | 10 | 22 | 231 | 517 | 748 | 2.28e-28 | 114 |
| MsG0880046438.01.T01 | AT5G61730 | 34.310 | 239 | 121 | 10 | 22 | 231 | 507 | 738 | 2.55e-28 | 114 |
| MsG0880046438.01.T01 | AT3G47730 | 32.245 | 245 | 128 | 9 | 16 | 231 | 511 | 746 | 2.18e-27 | 111 |
| MsG0880046438.01.T01 | AT5G61690 | 32.922 | 243 | 118 | 10 | 22 | 231 | 516 | 746 | 3.26e-27 | 110 |
| MsG0880046438.01.T01 | AT5G61690 | 33.054 | 239 | 124 | 10 | 22 | 231 | 516 | 747 | 4.06e-27 | 110 |
Find 62 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAATGAAACTATTAAAT+AGG | 0.198161 | 8:+73416683 | MsG0880046438.01.T01:CDS |
| TTCAAATTAGGTTGTTTATA+TGG | 0.223574 | 8:+73416327 | MsG0880046438.01.T01:intron |
| GCAAACAATTGCATGATTAA+TGG | 0.242207 | 8:-73414690 | None:intergenic |
| TTGGTATGCTTGGTCCTAAT+GGG | 0.261683 | 8:+73414807 | MsG0880046438.01.T01:CDS |
| CCGGATTAGACCCTGCTTCT+AGG | 0.269487 | 8:+73416362 | MsG0880046438.01.T01:CDS |
| TGCTATCAGGCTTGCGAAAC+AGG | 0.300464 | 8:+73416399 | MsG0880046438.01.T01:CDS |
| TTTGGTATGCTTGGTCCTAA+TGG | 0.318158 | 8:+73414806 | MsG0880046438.01.T01:CDS |
| CTTGAGCAATGTACCTCCTT+TGG | 0.324121 | 8:-73416637 | None:intergenic |
| GCGGAACTGGACTATTAAAA+AGG | 0.349692 | 8:+73416705 | MsG0880046438.01.T01:CDS |
| AACTATTAAATAGGCGGAAC+TGG | 0.363881 | 8:+73416692 | MsG0880046438.01.T01:CDS |
| ATGCAGACTTAAAATCTTCA+AGG | 0.371600 | 8:+73415277 | MsG0880046438.01.T01:CDS |
| ATTGCCTATGGAATGCTATC+AGG | 0.378461 | 8:+73416386 | MsG0880046438.01.T01:CDS |
| ATGCTTGGTCCTAATGGGGC+TGG | 0.380455 | 8:+73414812 | MsG0880046438.01.T01:CDS |
| TGCTTGGTCCTAATGGGGCT+GGG | 0.407211 | 8:+73414813 | MsG0880046438.01.T01:CDS |
| GAGGCTTTGTGTGATCGATT+AGG | 0.418842 | 8:+73416577 | MsG0880046438.01.T01:CDS |
| GAACTCTTCCCAGCCCCATT+AGG | 0.418894 | 8:-73414821 | None:intergenic |
| TATGTGTGCTTATAGATGAT+TGG | 0.440629 | 8:+73415011 | MsG0880046438.01.T01:intron |
| CCAGGACGGGATGGAAATCC+AGG | 0.441633 | 8:+73414734 | MsG0880046438.01.T01:CDS |
| TATGCTTTCAGCACATTCAA+TGG | 0.455677 | 8:+73416546 | MsG0880046438.01.T01:intron |
| GGGGAGTGCTTTGGTATGCT+TGG | 0.459630 | 8:+73414797 | MsG0880046438.01.T01:CDS |
| TTAAGTCTGCATAGAAAAGT+AGG | 0.462081 | 8:-73415266 | None:intergenic |
| CCTGGATTTCCATCCCGTCC+TGG | 0.462082 | 8:-73414734 | None:intergenic |
| CATAGGCAATTCCTAGAAGC+AGG | 0.465569 | 8:-73416373 | None:intergenic |
| CAGCAACCCCTCCATAGAAA+AGG | 0.470528 | 8:-73416134 | None:intergenic |
| GGTCTCACAGAGCCATCATC+TGG | 0.471605 | 8:+73415032 | MsG0880046438.01.T01:CDS |
| GTGCCTCGAGGGGAGTGCTT+TGG | 0.480183 | 8:+73414788 | MsG0880046438.01.T01:CDS |
| CCTAGAAGCAGGGTCTAATC+CGG | 0.491254 | 8:-73416362 | None:intergenic |
| CTTCTCCCTCTGAAGACAAA+AGG | 0.493783 | 8:-73414642 | None:intergenic |
| TGTTCCTTGCTGTGCCTCGA+GGG | 0.493999 | 8:+73414777 | MsG0880046438.01.T01:CDS |
| GGCAGTAGAAGAATCTTTGA+AGG | 0.502458 | 8:+73416104 | MsG0880046438.01.T01:intron |
| ACAATTGCATGATTAATGGT+TGG | 0.506495 | 8:-73414686 | None:intergenic |
| TGCGGCATATGTTCAAGGTC+AGG | 0.510713 | 8:+73415055 | MsG0880046438.01.T01:CDS |
| CTGCTTCTAGGAATTGCCTA+TGG | 0.518175 | 8:+73416374 | MsG0880046438.01.T01:CDS |
| TTCAGCACATTCAATGGAAG+AGG | 0.524876 | 8:+73416552 | MsG0880046438.01.T01:intron |
| TCTGGTGCGGCATATGTTCA+AGG | 0.525918 | 8:+73415050 | MsG0880046438.01.T01:CDS |
| GCAGGGTCTAATCCGGTACT+TGG | 0.528591 | 8:-73416355 | None:intergenic |
| ACATATGCCGCACCAGATGA+TGG | 0.538309 | 8:-73415044 | None:intergenic |
| TATATGGATGAGCCAAGTAC+CGG | 0.542219 | 8:+73416343 | MsG0880046438.01.T01:CDS |
| TTGTCTTCAGAGGGAGAAGG+TGG | 0.547323 | 8:+73414646 | MsG0880046438.01.T01:CDS |
| ACATTCAATGGAAGAGGCAG+AGG | 0.550197 | 8:+73416558 | MsG0880046438.01.T01:CDS |
| TTTCAGCTTACTCATGCTGT+GGG | 0.550746 | 8:-73415123 | None:intergenic |
| ATTTCAGCTTACTCATGCTG+TGG | 0.562062 | 8:-73415124 | None:intergenic |
| TGGTATGCTTGGTCCTAATG+GGG | 0.564755 | 8:+73414808 | MsG0880046438.01.T01:CDS |
| AAATTCTATCCAGGACGGGA+TGG | 0.568787 | 8:+73414725 | MsG0880046438.01.T01:CDS |
| TGAAAGCAATATTACTAACA+TGG | 0.578073 | 8:+73415093 | MsG0880046438.01.T01:CDS |
| CAAGCCTGATAGCATTCCAT+AGG | 0.581968 | 8:-73416390 | None:intergenic |
| TTAATATTCAAACAGTAATG+TGG | 0.591094 | 8:-73415327 | None:intergenic |
| ATGTTCCTTGCTGTGCCTCG+AGG | 0.594888 | 8:+73414776 | MsG0880046438.01.T01:CDS |
| GTTCCTTGCTGTGCCTCGAG+GGG | 0.611831 | 8:+73414778 | MsG0880046438.01.T01:CDS |
| AAAAGGCAAACATTAAATGA+GGG | 0.616423 | 8:+73416722 | MsG0880046438.01.T01:CDS |
| GGGGTTGCTGATAAACAAGC+GGG | 0.619755 | 8:+73416147 | MsG0880046438.01.T01:CDS |
| CACAGAGCCATCATCTGGTG+CGG | 0.621727 | 8:+73415037 | MsG0880046438.01.T01:CDS |
| GAAAGCAATATTACTAACAT+GGG | 0.628170 | 8:+73415094 | MsG0880046438.01.T01:CDS |
| AAATGAAACTATTAAATAGG+CGG | 0.629756 | 8:+73416686 | MsG0880046438.01.T01:CDS |
| ATAGGCAATTCCTAGAAGCA+GGG | 0.640618 | 8:-73416372 | None:intergenic |
| ACTCCCCTCGAGGCACAGCA+AGG | 0.650546 | 8:-73414781 | None:intergenic |
| GAATGAACTTACTTGAGTCA+AGG | 0.663965 | 8:-73415305 | None:intergenic |
| GACGGAAGATTGCAGTGCGT+AGG | 0.670076 | 8:+73416610 | MsG0880046438.01.T01:CDS |
| AGGGGTTGCTGATAAACAAG+CGG | 0.672960 | 8:+73416146 | MsG0880046438.01.T01:CDS |
| ATACCAAAGCACTCCCCTCG+AGG | 0.674604 | 8:-73414791 | None:intergenic |
| GCAGTGCGTAGGAAATCCAA+AGG | 0.686653 | 8:+73416621 | MsG0880046438.01.T01:CDS |
| GTGCGTAGGAAATCCAAAGG+AGG | 0.714617 | 8:+73416624 | MsG0880046438.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTAATTACATTAAATTT+AGG | + | Chr8:73415949-73415968 | MsG0880046438.01.T01:intron | 10.0% |
| !!! | TTAAATTTTAATATTACCAA+AGG | + | Chr8:73415575-73415594 | MsG0880046438.01.T01:intron | 10.0% |
| !! | AAGATAAACATAAAAAATGT+AGG | - | Chr8:73415152-73415171 | None:intergenic | 15.0% |
| !! | ATTTATCAATTGAAAAGAAA+AGG | - | Chr8:73415719-73415738 | None:intergenic | 15.0% |
| !! | CTGATTAGATTTATAAATTA+AGG | - | Chr8:73414989-73415008 | None:intergenic | 15.0% |
| !! | TCAAAATGAAACTATTAAAT+AGG | + | Chr8:73416683-73416702 | MsG0880046438.01.T01:CDS | 15.0% |
| !! | AAATAAACAATAACAATTGC+AGG | - | Chr8:73415994-73416013 | None:intergenic | 20.0% |
| !! | AAATGAAACTATTAAATAGG+CGG | + | Chr8:73416686-73416705 | MsG0880046438.01.T01:CDS | 20.0% |
| !! | CTAAACTTTCATTAAAAGTA+GGG | - | Chr8:73415915-73415934 | None:intergenic | 20.0% |
| !! | GAAAAATTAAATTGCGAAAT+AGG | + | Chr8:73415763-73415782 | MsG0880046438.01.T01:intron | 20.0% |
| !! | TGAAAAGAAAAGGATAATTT+AGG | - | Chr8:73415709-73415728 | None:intergenic | 20.0% |
| !! | TGAATATTAAGATTCTTGTT+AGG | + | Chr8:73415340-73415359 | MsG0880046438.01.T01:intron | 20.0% |
| !! | TGTAAATGACAATTCAAATT+AGG | + | Chr8:73416315-73416334 | MsG0880046438.01.T01:intron | 20.0% |
| !! | TTAAGGAGAAAAAAATTCAA+AGG | - | Chr8:73414972-73414991 | None:intergenic | 20.0% |
| !! | TTAATATTCAAACAGTAATG+TGG | - | Chr8:73415330-73415349 | None:intergenic | 20.0% |
| !! | TTATAAAAATTGTACTTCCA+CGG | + | Chr8:73415381-73415400 | MsG0880046438.01.T01:intron | 20.0% |
| !!! | TTATTTTTCTGTTTAGAGTA+TGG | + | Chr8:73416008-73416027 | MsG0880046438.01.T01:intron | 20.0% |
| !!! | TTCAAATTAGGTTGTTTATA+TGG | + | Chr8:73416327-73416346 | MsG0880046438.01.T01:intron | 20.0% |
| ! | AAAAATCAAGATAACCTACT+TGG | + | Chr8:73415645-73415664 | MsG0880046438.01.T01:intron | 25.0% |
| ! | ACAAAACTAATATGACCATA+TGG | - | Chr8:73415506-73415525 | None:intergenic | 25.0% |
| ! | CCTAAACTTTCATTAAAAGT+AGG | - | Chr8:73415916-73415935 | None:intergenic | 25.0% |
| ! | GAAAGCAATATTACTAACAT+GGG | + | Chr8:73415094-73415113 | MsG0880046438.01.T01:CDS | 25.0% |
| ! | TAAAAAAATTCTATCCAGGA+CGG | + | Chr8:73414720-73414739 | MsG0880046438.01.T01:CDS | 25.0% |
| ! | TATATGTTGTAATAAGGTTC+AGG | - | Chr8:73415795-73415814 | None:intergenic | 25.0% |
| ! | TGAAAACAGAAACAAACTTT+GGG | - | Chr8:73416230-73416249 | None:intergenic | 25.0% |
| ! | TGAAAGCAATATTACTAACA+TGG | + | Chr8:73415093-73415112 | MsG0880046438.01.T01:CDS | 25.0% |
| ! | TTGAAAACAGAAACAAACTT+TGG | - | Chr8:73416231-73416250 | None:intergenic | 25.0% |
| !! | GAAGAGTTCTTTTATTAGTA+TGG | + | Chr8:73414835-73414854 | MsG0880046438.01.T01:CDS | 25.0% |
| !! | TGTAATATCTTTTTCCAAGT+AGG | - | Chr8:73415662-73415681 | None:intergenic | 25.0% |
| !! | TTTTAAACCTTTTCTATGGA+GGG | + | Chr8:73416127-73416146 | MsG0880046438.01.T01:CDS | 25.0% |
| !!! | AAGGTTTTAAACCTTTTCTA+TGG | + | Chr8:73416123-73416142 | MsG0880046438.01.T01:CDS | 25.0% |
| !!! | CCTACTTTTAATGAAAGTTT+AGG | + | Chr8:73415913-73415932 | MsG0880046438.01.T01:intron | 25.0% |
| !!! | GAAAAGTGTTTCTAAAAATG+TGG | + | Chr8:73415617-73415636 | MsG0880046438.01.T01:intron | 25.0% |
| AAAAAAATTCTATCCAGGAC+GGG | + | Chr8:73414721-73414740 | MsG0880046438.01.T01:CDS | 30.0% | |
| ACAATTGCATGATTAATGGT+TGG | - | Chr8:73414689-73414708 | None:intergenic | 30.0% | |
| ATAAAACTGAGTTGTTCCTT+TGG | - | Chr8:73415594-73415613 | None:intergenic | 30.0% | |
| ATGCAGACTTAAAATCTTCA+AGG | + | Chr8:73415277-73415296 | MsG0880046438.01.T01:CDS | 30.0% | |
| CCTGCTTATATGTTGTAATA+AGG | - | Chr8:73415801-73415820 | None:intergenic | 30.0% | |
| CCTTATTACAACATATAAGC+AGG | + | Chr8:73415798-73415817 | MsG0880046438.01.T01:intron | 30.0% | |
| CTTTCATTAAAAGTAGGGTT+TGG | - | Chr8:73415910-73415929 | None:intergenic | 30.0% | |
| GAAAACAGAAACAAACTTTG+GGG | - | Chr8:73416229-73416248 | None:intergenic | 30.0% | |
| GACCTAAAAAAATTCTATCC+AGG | + | Chr8:73414716-73414735 | MsG0880046438.01.T01:CDS | 30.0% | |
| GCAAACAATTGCATGATTAA+TGG | - | Chr8:73414693-73414712 | None:intergenic | 30.0% | |
| TAAAACACATATTTATGCCG+TGG | - | Chr8:73415401-73415420 | None:intergenic | 30.0% | |
| TATGTGTGCTTATAGATGAT+TGG | + | Chr8:73415011-73415030 | MsG0880046438.01.T01:intron | 30.0% | |
| TTAAATTGCGAAATAGGAGA+AGG | + | Chr8:73415769-73415788 | MsG0880046438.01.T01:intron | 30.0% | |
| TTAAGTCTGCATAGAAAAGT+AGG | - | Chr8:73415269-73415288 | None:intergenic | 30.0% | |
| ! | ACGGCATAAATATGTGTTTT+AGG | + | Chr8:73415400-73415419 | MsG0880046438.01.T01:intron | 30.0% |
| ! | AGCTTCTATTTTATTGTTGC+AGG | + | Chr8:73416083-73416102 | MsG0880046438.01.T01:intron | 30.0% |
| ! | ATCTAGAACATCATTCCATA+TGG | + | Chr8:73415488-73415507 | MsG0880046438.01.T01:intron | 30.0% |
| ! | TTTAAACCTTTTCTATGGAG+GGG | + | Chr8:73416128-73416147 | MsG0880046438.01.T01:CDS | 30.0% |
| !! | GTTTTAAACCTTTTCTATGG+AGG | + | Chr8:73416126-73416145 | MsG0880046438.01.T01:CDS | 30.0% |
| !!! | AGATTTGTTTTAGTTGAGTC+TGG | - | Chr8:73415834-73415853 | None:intergenic | 30.0% |
| !!! | GTCCTGGATAGAATTTTTTT+AGG | - | Chr8:73414721-73414740 | None:intergenic | 30.0% |
| AACTATTAAATAGGCGGAAC+TGG | + | Chr8:73416692-73416711 | MsG0880046438.01.T01:CDS | 35.0% | |
| GAATGAACTTACTTGAGTCA+AGG | - | Chr8:73415308-73415327 | None:intergenic | 35.0% | |
| TAATCACACTCACTCTTTCA+TGG | + | Chr8:73416444-73416463 | MsG0880046438.01.T01:intron | 35.0% | |
| TATGCTTTCAGCACATTCAA+TGG | + | Chr8:73416546-73416565 | MsG0880046438.01.T01:intron | 35.0% | |
| ! | AGTGTTGCCATTTCATTGAT+TGG | + | Chr8:73416200-73416219 | MsG0880046438.01.T01:intron | 35.0% |
| ! | CGATTAGGAATTTTCGTAGA+CGG | + | Chr8:73416592-73416611 | MsG0880046438.01.T01:CDS | 35.0% |
| ! | GTGTTGCCATTTCATTGATT+GGG | + | Chr8:73416201-73416220 | MsG0880046438.01.T01:intron | 35.0% |
| ! | TCTTTCACAGCAAATTTTCC+TGG | - | Chr8:73414755-73414774 | None:intergenic | 35.0% |
| ! | TGTTGCCATTTCATTGATTG+GGG | + | Chr8:73416202-73416221 | MsG0880046438.01.T01:intron | 35.0% |
| ! | TTCTTCCTTTTGTCTTCAGA+GGG | + | Chr8:73414637-73414656 | MsG0880046438.01.T01:CDS | 35.0% |
| ! | TTTCTTCCTTTTGTCTTCAG+AGG | + | Chr8:73414636-73414655 | MsG0880046438.01.T01:CDS | 35.0% |
| !! | ATGATTCTATAGCTTGCTGT+GGG | + | Chr8:73415221-73415240 | MsG0880046438.01.T01:intron | 35.0% |
| ATAGGCAATTCCTAGAAGCA+GGG | - | Chr8:73416375-73416394 | None:intergenic | 40.0% | |
| ATTGCCTATGGAATGCTATC+AGG | + | Chr8:73416386-73416405 | MsG0880046438.01.T01:CDS | 40.0% | |
| ATTTCAGCTTACTCATGCTG+TGG | - | Chr8:73415127-73415146 | None:intergenic | 40.0% | |
| CAGCAAGCTATAGAATCATG+AGG | - | Chr8:73415220-73415239 | None:intergenic | 40.0% | |
| GAAAGAGTGAGTGTGATTAC+TGG | - | Chr8:73416443-73416462 | None:intergenic | 40.0% | |
| GCGGAACTGGACTATTAAAA+AGG | + | Chr8:73416705-73416724 | MsG0880046438.01.T01:CDS | 40.0% | |
| GGCAGTAGAAGAATCTTTGA+AGG | + | Chr8:73416104-73416123 | MsG0880046438.01.T01:intron | 40.0% | |
| TAAACAAGCGGGAAATACAG+TGG | + | Chr8:73416158-73416177 | MsG0880046438.01.T01:intron | 40.0% | |
| TAGTTGAGTCTGGTCATAGT+TGG | - | Chr8:73415824-73415843 | None:intergenic | 40.0% | |
| TATATGGATGAGCCAAGTAC+CGG | + | Chr8:73416343-73416362 | MsG0880046438.01.T01:CDS | 40.0% | |
| TTCAGCACATTCAATGGAAG+AGG | + | Chr8:73416552-73416571 | MsG0880046438.01.T01:intron | 40.0% | |
| TTGGTATGCTTGGTCCTAAT+GGG | + | Chr8:73414807-73414826 | MsG0880046438.01.T01:CDS | 40.0% | |
| TTTCAGCTTACTCATGCTGT+GGG | - | Chr8:73415126-73415145 | None:intergenic | 40.0% | |
| TTTGGTATGCTTGGTCCTAA+TGG | + | Chr8:73414806-73414825 | MsG0880046438.01.T01:CDS | 40.0% | |
| !! | CATGATTCTATAGCTTGCTG+TGG | + | Chr8:73415220-73415239 | MsG0880046438.01.T01:intron | 40.0% |
| AAATTCTATCCAGGACGGGA+TGG | + | Chr8:73414725-73414744 | MsG0880046438.01.T01:CDS | 45.0% | |
| AATACAGTGGAGGGATGAAG+AGG | + | Chr8:73416171-73416190 | MsG0880046438.01.T01:intron | 45.0% | |
| ACATTCAATGGAAGAGGCAG+AGG | + | Chr8:73416558-73416577 | MsG0880046438.01.T01:CDS | 45.0% | |
| AGGGGTTGCTGATAAACAAG+CGG | + | Chr8:73416146-73416165 | MsG0880046438.01.T01:CDS | 45.0% | |
| CAAGCCTGATAGCATTCCAT+AGG | - | Chr8:73416393-73416412 | None:intergenic | 45.0% | |
| CATAGGCAATTCCTAGAAGC+AGG | - | Chr8:73416376-73416395 | None:intergenic | 45.0% | |
| CTTGAGCAATGTACCTCCTT+TGG | - | Chr8:73416640-73416659 | None:intergenic | 45.0% | |
| TGGTATGCTTGGTCCTAATG+GGG | + | Chr8:73414808-73414827 | MsG0880046438.01.T01:CDS | 45.0% | |
| ! | CTGCTTCTAGGAATTGCCTA+TGG | + | Chr8:73416374-73416393 | MsG0880046438.01.T01:CDS | 45.0% |
| ! | CTTCTCCCTCTGAAGACAAA+AGG | - | Chr8:73414645-73414664 | None:intergenic | 45.0% |
| ! | CTTTTGTCTTCAGAGGGAGA+AGG | + | Chr8:73414643-73414662 | MsG0880046438.01.T01:CDS | 45.0% |
| ! | GAGGCTTTGTGTGATCGATT+AGG | + | Chr8:73416577-73416596 | MsG0880046438.01.T01:CDS | 45.0% |
| !! | ATTATTAAAAAAAATGAAAA+AGG | - | Chr8:73416271-73416290 | None:intergenic | 5.0% |
| ACAAGCGGGAAATACAGTGG+AGG | + | Chr8:73416161-73416180 | MsG0880046438.01.T01:intron | 50.0% | |
| ACATATGCCGCACCAGATGA+TGG | - | Chr8:73415047-73415066 | None:intergenic | 50.0% | |
| CAAGCGGGAAATACAGTGGA+GGG | + | Chr8:73416162-73416181 | MsG0880046438.01.T01:intron | 50.0% | |
| CAGCAACCCCTCCATAGAAA+AGG | - | Chr8:73416137-73416156 | None:intergenic | 50.0% | |
| CCTAGAAGCAGGGTCTAATC+CGG | - | Chr8:73416365-73416384 | None:intergenic | 50.0% | |
| GCAGTGCGTAGGAAATCCAA+AGG | + | Chr8:73416621-73416640 | MsG0880046438.01.T01:CDS | 50.0% | |
| GGGGTCCCCAATCAATGAAA+TGG | - | Chr8:73416210-73416229 | None:intergenic | 50.0% | |
| GGGGTTGCTGATAAACAAGC+GGG | + | Chr8:73416147-73416166 | MsG0880046438.01.T01:CDS | 50.0% | |
| GTGCGTAGGAAATCCAAAGG+AGG | + | Chr8:73416624-73416643 | MsG0880046438.01.T01:CDS | 50.0% | |
| TCTGGTGCGGCATATGTTCA+AGG | + | Chr8:73415050-73415069 | MsG0880046438.01.T01:CDS | 50.0% | |
| TGCGGCATATGTTCAAGGTC+AGG | + | Chr8:73415055-73415074 | MsG0880046438.01.T01:CDS | 50.0% | |
| TGCTATCAGGCTTGCGAAAC+AGG | + | Chr8:73416399-73416418 | MsG0880046438.01.T01:CDS | 50.0% | |
| TTGCTGTGGGAAAGCTTGAC+AGG | + | Chr8:73415234-73415253 | MsG0880046438.01.T01:intron | 50.0% | |
| TTGTCTTCAGAGGGAGAAGG+TGG | + | Chr8:73414646-73414665 | MsG0880046438.01.T01:CDS | 50.0% | |
| ACAGTGGAGGGATGAAGAGG+AGG | + | Chr8:73416174-73416193 | MsG0880046438.01.T01:intron | 55.0% | |
| ATGCTTGGTCCTAATGGGGC+TGG | + | Chr8:73414812-73414831 | MsG0880046438.01.T01:CDS | 55.0% | |
| CACAGAGCCATCATCTGGTG+CGG | + | Chr8:73415037-73415056 | MsG0880046438.01.T01:CDS | 55.0% | |
| GAACTCTTCCCAGCCCCATT+AGG | - | Chr8:73414824-73414843 | None:intergenic | 55.0% | |
| GACGGAAGATTGCAGTGCGT+AGG | + | Chr8:73416610-73416629 | MsG0880046438.01.T01:CDS | 55.0% | |
| GCAGGGTCTAATCCGGTACT+TGG | - | Chr8:73416358-73416377 | None:intergenic | 55.0% | |
| GGTCTCACAGAGCCATCATC+TGG | + | Chr8:73415032-73415051 | MsG0880046438.01.T01:CDS | 55.0% | |
| TGCTTGGTCCTAATGGGGCT+GGG | + | Chr8:73414813-73414832 | MsG0880046438.01.T01:CDS | 55.0% | |
| ! | ATACCAAAGCACTCCCCTCG+AGG | - | Chr8:73414794-73414813 | None:intergenic | 55.0% |
| ! | ATGTTCCTTGCTGTGCCTCG+AGG | + | Chr8:73414776-73414795 | MsG0880046438.01.T01:CDS | 55.0% |
| ! | CCGGATTAGACCCTGCTTCT+AGG | + | Chr8:73416362-73416381 | MsG0880046438.01.T01:CDS | 55.0% |
| ! | TGTTCCTTGCTGTGCCTCGA+GGG | + | Chr8:73414777-73414796 | MsG0880046438.01.T01:CDS | 55.0% |
| !! | GGGGAGTGCTTTGGTATGCT+TGG | + | Chr8:73414797-73414816 | MsG0880046438.01.T01:CDS | 55.0% |
| CCAGGACGGGATGGAAATCC+AGG | + | Chr8:73414734-73414753 | MsG0880046438.01.T01:CDS | 60.0% | |
| CCTGGATTTCCATCCCGTCC+TGG | - | Chr8:73414737-73414756 | None:intergenic | 60.0% | |
| ! | GTTCCTTGCTGTGCCTCGAG+GGG | + | Chr8:73414778-73414797 | MsG0880046438.01.T01:CDS | 60.0% |
| ACTCCCCTCGAGGCACAGCA+AGG | - | Chr8:73414784-73414803 | None:intergenic | 65.0% | |
| !! | GTGCCTCGAGGGGAGTGCTT+TGG | + | Chr8:73414788-73414807 | MsG0880046438.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 73414632 | 73416741 | 73414632 | ID=MsG0880046438.01;Name=MsG0880046438.01 |
| Chr8 | mRNA | 73414632 | 73416741 | 73414632 | ID=MsG0880046438.01.T01;Parent=MsG0880046438.01;Name=MsG0880046438.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.4|0.33|1|1|1|6|0|265 |
| Chr8 | exon | 73414632 | 73414856 | 73414632 | ID=MsG0880046438.01.T01:exon:11694;Parent=MsG0880046438.01.T01 |
| Chr8 | exon | 73415026 | 73415134 | 73415026 | ID=MsG0880046438.01.T01:exon:11695;Parent=MsG0880046438.01.T01 |
| Chr8 | exon | 73415256 | 73415356 | 73415256 | ID=MsG0880046438.01.T01:exon:11696;Parent=MsG0880046438.01.T01 |
| Chr8 | exon | 73416105 | 73416176 | 73416105 | ID=MsG0880046438.01.T01:exon:11697;Parent=MsG0880046438.01.T01 |
| Chr8 | exon | 73416337 | 73416442 | 73416337 | ID=MsG0880046438.01.T01:exon:11698;Parent=MsG0880046438.01.T01 |
| Chr8 | exon | 73416557 | 73416741 | 73416557 | ID=MsG0880046438.01.T01:exon:11699;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73414632 | 73414856 | 73414632 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73415026 | 73415134 | 73415026 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73415256 | 73415356 | 73415256 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73416105 | 73416176 | 73416105 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73416337 | 73416442 | 73416337 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Chr8 | CDS | 73416557 | 73416741 | 73416557 | ID=MsG0880046438.01.T01:cds;Parent=MsG0880046438.01.T01 |
| Gene Sequence |
| Protein sequence |
