AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027833.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027833.01.T01 MTR_5g063760 90.654 107 10 0 14 120 470 576 1.97e-63 203
MsG0580027833.01.T01 MTR_5g063740 88.785 107 12 0 14 120 846 952 8.23e-58 192
MsG0580027833.01.T01 MTR_4g046920 65.094 106 35 2 15 119 929 1033 2.78e-37 133
MsG0580027833.01.T01 MTR_4g064760 66.038 106 35 1 14 119 887 991 4.13e-37 133
MsG0580027833.01.T01 MTR_5g087320 65.421 107 35 2 14 119 888 993 7.39e-37 132
MsG0580027833.01.T01 MTR_5g087090 65.421 107 35 2 14 119 928 1033 2.01e-36 131
MsG0580027833.01.T01 MTR_5g086650 60.000 105 40 2 14 117 59 162 8.18e-36 120
MsG0580027833.01.T01 MTR_5g086570 65.421 107 35 2 14 119 948 1053 1.17e-35 129
MsG0580027833.01.T01 MTR_5g087070 65.421 107 35 2 14 119 955 1060 3.59e-35 127
MsG0580027833.01.T01 MTR_5g086550 63.551 107 37 2 14 119 862 967 4.17e-35 127
MsG0580027833.01.T01 MTR_5g086630 62.037 108 39 2 14 120 886 992 6.09e-35 127
MsG0580027833.01.T01 MTR_5g087080 62.963 108 37 2 14 120 883 988 1.19e-34 126
MsG0580027833.01.T01 MTR_5g086810 64.486 107 36 2 14 119 889 994 2.51e-34 125
MsG0580027833.01.T01 MTR_5g086945 64.486 107 36 2 14 119 568 673 2.72e-34 125
MsG0580027833.01.T01 MTR_5g080000 60.577 104 41 0 14 117 806 909 1.52e-33 123
MsG0580027833.01.T01 MTR_5g079980 60.577 104 41 0 14 117 900 1003 1.65e-33 122
MsG0580027833.01.T01 MTR_5g086530 62.264 106 39 1 14 119 884 988 4.44e-33 121
MsG0580027833.01.T01 MTR_5g096340 56.604 106 46 0 14 119 911 1016 1.48e-32 120
MsG0580027833.01.T01 MTR_5g086620 61.111 108 41 1 9 116 619 725 8.21e-32 118
MsG0580027833.01.T01 MTR_5g095200 55.660 106 47 0 14 119 165 270 1.05e-31 113
MsG0580027833.01.T01 MTR_4g032320 57.407 108 44 1 14 119 952 1059 1.15e-30 114
MsG0580027833.01.T01 MTR_5g096320 57.009 107 45 1 14 119 468 574 3.00e-30 113
MsG0580027833.01.T01 MTR_3g027330 55.660 106 47 0 14 119 861 966 7.00e-30 112
MsG0580027833.01.T01 MTR_5g095120 55.660 106 47 0 14 119 904 1009 1.18e-29 112
MsG0580027833.01.T01 MTR_5g094820 57.407 108 41 2 12 119 744 846 1.58e-29 111
MsG0580027833.01.T01 MTR_6g471240 54.206 107 48 1 14 119 906 1012 4.31e-29 110
MsG0580027833.01.T01 MTR_2g032560 55.140 107 47 1 14 119 853 959 1.69e-28 108
MsG0580027833.01.T01 MTR_5g096360 50.943 106 33 1 14 119 837 923 7.48e-24 95.5
MsG0580027833.01.T01 MTR_7g009580 45.283 106 54 3 14 118 797 899 1.35e-20 86.3
MsG0580027833.01.T01 MTR_7g009580 45.631 103 51 2 14 112 1462 1563 1.94e-17 77.0
MsG0580027833.01.T01 MTR_7g009520 44.231 104 54 2 14 114 191 293 3.45e-17 76.3
MsG0580027833.01.T01 MTR_7g009510 43.000 100 55 1 14 111 803 902 4.83e-17 75.9
MsG0580027833.01.T01 MTR_7g009790 41.748 103 57 2 12 111 744 846 5.85e-17 75.9
MsG0580027833.01.T01 MTR_2g450870 45.192 104 51 4 14 115 791 890 2.51e-16 73.9
MsG0580027833.01.T01 MTR_8g040910 37.607 117 54 4 14 114 19 132 3.47e-16 70.1
MsG0580027833.01.T01 MTR_5g095420 66.667 57 19 0 12 68 731 787 3.75e-16 73.6
MsG0580027833.01.T01 MTR_7g009470 41.584 101 57 1 14 112 760 860 4.53e-16 73.2
MsG0580027833.01.T01 MTR_7g009450 41.837 98 57 0 14 111 798 895 1.57e-15 71.6
MsG0580027833.01.T01 MTR_8g040920 37.273 110 60 2 14 114 37 146 2.47e-15 68.2
MsG0580027833.01.T01 MTR_8g089000 38.462 117 52 4 14 112 753 867 3.16e-15 70.9
MsG0580027833.01.T01 MTR_7g010730 43.564 101 53 2 14 111 807 906 3.53e-15 70.9
MsG0580027833.01.T01 MTR_2g017805 39.048 105 55 2 14 111 269 371 9.32e-15 69.3
MsG0580027833.01.T01 MTR_4g016910 36.792 106 66 1 12 117 576 680 1.09e-14 69.3
MsG0580027833.01.T01 MTR_8g041100 37.607 117 54 4 14 114 760 873 1.23e-14 69.3
MsG0580027833.01.T01 MTR_8g040985 41.304 92 52 1 17 106 1 92 1.29e-14 65.1
MsG0580027833.01.T01 MTR_4g017280 40.594 101 49 3 14 113 970 1060 2.17e-14 68.6
MsG0580027833.01.T01 MTR_7g007820 46.429 84 38 2 14 90 826 909 2.39e-14 68.2
MsG0580027833.01.T01 MTR_4g016850 40.367 109 54 3 14 117 806 908 2.39e-14 68.2
MsG0580027833.01.T01 MTR_2g017495 35.294 119 59 4 1 111 655 763 3.79e-14 67.8
MsG0580027833.01.T01 MTR_8g041150 37.273 110 60 2 14 114 709 818 4.03e-14 67.8
MsG0580027833.01.T01 MTR_4g016780 45.122 82 40 1 14 90 568 649 5.15e-14 67.4
MsG0580027833.01.T01 MTR_2g031660 39.831 118 60 2 6 119 171 281 8.78e-14 66.2
MsG0580027833.01.T01 MTR_8g041190 38.462 117 53 4 14 114 712 825 1.11e-13 66.2
MsG0580027833.01.T01 MTR_8g040925 38.462 117 53 4 14 114 712 825 1.11e-13 66.2
MsG0580027833.01.T01 MTR_5g085970 42.045 88 49 1 14 99 858 945 1.14e-13 66.2
MsG0580027833.01.T01 MTR_7g009570 41.176 102 57 2 12 111 750 850 1.30e-13 66.2
MsG0580027833.01.T01 MTR_7g009420 40.816 98 56 1 17 112 783 880 2.03e-13 65.5
MsG0580027833.01.T01 MTR_3g463540 47.887 71 36 1 14 84 636 705 2.06e-13 65.5
MsG0580027833.01.T01 MTR_3g452800 39.773 88 51 1 14 99 639 726 2.46e-13 65.5
MsG0580027833.01.T01 MTR_4g017350 43.210 81 43 2 14 94 971 1048 2.75e-13 65.5
MsG0580027833.01.T01 MTR_4g417260 41.837 98 50 3 14 106 968 1063 2.76e-13 65.5
MsG0580027833.01.T01 MTR_2g017420 36.190 105 58 2 14 111 857 959 3.04e-13 65.1
MsG0580027833.01.T01 MTR_8g023720 42.466 73 42 0 14 86 651 723 3.15e-13 65.1
MsG0580027833.01.T01 MTR_6g016195 38.384 99 51 2 14 108 930 1022 3.24e-13 65.1
MsG0580027833.01.T01 MTR_0087s0070 37.000 100 55 2 12 108 582 676 4.82e-13 64.7
MsG0580027833.01.T01 MTR_2g017470 37.736 106 56 3 14 111 846 949 5.34e-13 64.3
MsG0580027833.01.T01 MTR_3g452900 38.372 86 52 1 14 99 663 747 5.89e-13 64.3
MsG0580027833.01.T01 MTR_2g017480 36.190 105 58 3 14 111 843 945 6.05e-13 64.3
MsG0580027833.01.T01 MTR_4g017600 39.286 84 48 1 14 94 975 1058 1.20e-12 63.5
MsG0580027833.01.T01 MTR_4g018970 41.346 104 54 3 14 111 789 891 1.34e-12 63.2
MsG0580027833.01.T01 MTR_0271s0040 35.556 90 57 1 14 103 71 159 1.58e-12 62.0
MsG0580027833.01.T01 MTR_3g452790 47.222 72 36 2 14 84 589 659 1.59e-12 63.2
MsG0580027833.01.T01 MTR_6g016140 36.000 100 57 2 12 108 804 899 1.62e-12 63.2
MsG0580027833.01.T01 MTR_3g048860 39.535 86 51 1 14 99 637 721 1.83e-12 62.8
MsG0580027833.01.T01 MTR_0087s0040 36.538 104 60 2 7 108 846 945 3.09e-12 62.4
MsG0580027833.01.T01 MTR_3g041560 36.667 90 56 1 14 103 660 748 3.16e-12 62.4
MsG0580027833.01.T01 MTR_3g041560 36.667 90 56 1 14 103 636 724 3.24e-12 62.4
MsG0580027833.01.T01 MTR_3g452850 36.667 90 56 1 14 103 540 628 4.24e-12 62.0
MsG0580027833.01.T01 MTR_6g016210 37.113 97 55 2 14 108 849 941 4.69e-12 61.6
MsG0580027833.01.T01 MTR_4g017260 38.272 81 50 0 14 94 758 838 4.84e-12 61.6
MsG0580027833.01.T01 MTR_8g023445 40.000 90 49 3 14 99 688 776 4.90e-12 61.6
MsG0580027833.01.T01 MTR_8g088970 35.043 117 56 4 14 112 784 898 5.20e-12 61.6
MsG0580027833.01.T01 MTR_3g452730 38.889 90 50 3 14 99 649 737 7.05e-12 61.2
MsG0580027833.01.T01 MTR_4g040360 37.079 89 52 2 14 101 908 993 8.18e-12 61.2
MsG0580027833.01.T01 MTR_3g452750 37.778 90 55 1 14 103 755 843 8.49e-12 60.8
MsG0580027833.01.T01 MTR_4g017490 33.654 104 66 1 14 114 712 815 9.42e-12 60.8
MsG0580027833.01.T01 MTR_1g015530 35.644 101 46 1 13 113 514 595 9.71e-12 60.8
MsG0580027833.01.T01 MTR_4g417270 42.466 73 40 1 14 84 975 1047 1.00e-11 60.8
MsG0580027833.01.T01 MTR_4g417270 38.835 103 56 3 14 111 1297 1397 1.51e-11 60.5
MsG0580027833.01.T01 MTR_6g051800 35.354 99 54 3 14 112 797 885 1.08e-11 60.8
MsG0580027833.01.T01 MTR_1g015530 35.644 101 46 1 13 113 485 566 1.09e-11 60.8
MsG0580027833.01.T01 MTR_6g038760 34.737 95 57 1 14 108 283 372 1.33e-11 60.5
MsG0580027833.01.T01 MTR_6g016200 37.374 99 56 2 12 108 299 393 1.37e-11 60.5
MsG0580027833.01.T01 MTR_3g452880 36.667 90 56 1 14 103 149 237 1.42e-11 59.7
MsG0580027833.01.T01 MTR_3g048440 38.889 90 50 3 14 99 732 820 1.43e-11 60.5
MsG0580027833.01.T01 MTR_7g014430 35.052 97 57 2 6 99 789 882 1.52e-11 60.5
MsG0580027833.01.T01 MTR_3g048470 38.372 86 52 1 14 99 423 507 1.60e-11 60.1
MsG0580027833.01.T01 MTR_2g055360 38.889 108 56 4 14 115 653 756 1.76e-11 60.1
MsG0580027833.01.T01 MTR_4g016820 33.654 104 68 1 14 117 157 259 2.02e-11 59.3
MsG0580027833.01.T01 MTR_4g016800 34.615 104 67 1 14 117 681 783 2.16e-11 59.7
MsG0580027833.01.T01 MTR_3g048785 37.209 86 53 1 14 99 670 754 2.16e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 901 1003 2.19e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 901 1003 2.20e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 593 695 2.20e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 683 785 2.31e-11 59.7
MsG0580027833.01.T01 MTR_4g017370 36.082 97 57 1 14 105 975 1071 2.34e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 683 785 2.42e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 593 695 2.47e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 901 1003 2.52e-11 59.7
MsG0580027833.01.T01 MTR_4g015960 34.862 109 55 2 14 106 497 605 2.55e-11 59.7
MsG0580027833.01.T01 MTR_3g452950 43.750 64 35 1 14 77 58 120 2.57e-11 57.0
MsG0580027833.01.T01 MTR_6g038790 35.789 95 55 2 14 108 505 593 2.58e-11 59.7
MsG0580027833.01.T01 MTR_5g046350 52.830 53 25 0 14 66 936 988 2.60e-11 59.7
MsG0580027833.01.T01 MTR_4g015930 34.615 104 67 1 14 117 681 783 2.64e-11 59.7
MsG0580027833.01.T01 MTR_6g038790 35.789 95 55 2 14 108 495 583 2.70e-11 59.7
MsG0580027833.01.T01 MTR_3g452770 44.444 72 38 2 14 84 658 728 2.94e-11 59.3
MsG0580027833.01.T01 MTR_2g046780 42.857 105 53 4 14 115 346 446 3.29e-11 59.3
MsG0580027833.01.T01 MTR_3g048910 37.363 91 50 2 14 99 658 746 3.53e-11 59.3
MsG0580027833.01.T01 MTR_3g451890 35.556 90 57 1 14 103 292 380 3.87e-11 58.9
MsG0580027833.01.T01 MTR_3g048740 35.000 100 62 2 6 103 611 709 3.91e-11 58.9
MsG0580027833.01.T01 MTR_3g452970 37.209 86 53 1 14 99 384 468 3.93e-11 58.9
MsG0580027833.01.T01 MTR_3g452210 36.667 90 56 1 14 103 544 632 4.84e-11 58.9
MsG0580027833.01.T01 MTR_3g451090 36.667 90 56 1 14 103 544 632 4.84e-11 58.9
MsG0580027833.01.T01 MTR_3g452760 35.789 95 55 2 14 108 644 732 5.22e-11 58.9
MsG0580027833.01.T01 MTR_4g019030 40.385 104 50 5 14 111 865 962 5.96e-11 58.5
MsG0580027833.01.T01 MTR_3g048760 37.209 86 53 1 14 99 517 601 7.09e-11 58.5
MsG0580027833.01.T01 MTR_5g069580 35.644 101 53 2 14 102 778 878 7.18e-11 58.5
MsG0580027833.01.T01 MTR_0087s0030 35.000 100 57 2 12 108 520 614 7.47e-11 58.2
MsG0580027833.01.T01 MTR_4g017720 39.604 101 47 4 14 111 932 1021 8.32e-11 58.2
MsG0580027833.01.T01 MTR_2g078260 39.175 97 52 4 14 106 790 883 8.65e-11 58.2
MsG0580027833.01.T01 MTR_4g017730 39.604 101 47 4 14 111 839 928 9.02e-11 58.2
MsG0580027833.01.T01 MTR_0640s0020 36.667 90 55 2 14 103 663 750 9.23e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027833.01.T01 AT2G33030 40.741 108 61 2 14 119 100 206 3.12e-19 79.7
MsG0580027833.01.T01 AT2G33020 37.736 106 65 1 14 119 754 858 1.68e-17 77.4
MsG0580027833.01.T01 AT3G05650 39.252 107 61 2 14 117 741 846 2.43e-17 77.0
MsG0580027833.01.T01 AT2G33060 39.252 107 59 3 14 119 667 768 2.82e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 798 904 2.94e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 735 841 3.01e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 807 913 3.12e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 744 850 3.22e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 831 937 3.28e-17 76.6
MsG0580027833.01.T01 AT3G11010 40.367 109 58 3 14 117 768 874 3.39e-17 76.6
MsG0580027833.01.T01 AT3G05660 41.121 107 61 2 14 120 752 856 5.50e-17 75.9
MsG0580027833.01.T01 AT2G25440 35.714 112 61 3 14 119 554 660 4.95e-16 73.2
MsG0580027833.01.T01 AT2G32660 41.584 101 57 2 14 114 472 570 9.91e-16 72.4
MsG0580027833.01.T01 AT2G32660 41.584 101 57 2 14 114 654 752 1.03e-15 72.4
MsG0580027833.01.T01 AT4G13810 42.857 98 55 1 14 110 593 690 2.97e-15 70.9
MsG0580027833.01.T01 AT4G13810 42.857 98 55 1 14 110 417 514 3.07e-15 70.9
MsG0580027833.01.T01 AT4G13810 42.857 98 55 1 14 110 511 608 4.28e-15 70.5
MsG0580027833.01.T01 AT5G40170 39.175 97 56 1 14 107 679 775 4.30e-15 70.5
MsG0580027833.01.T01 AT3G24982 39.450 109 62 2 14 119 798 905 6.54e-15 70.1
MsG0580027833.01.T01 AT1G45616 40.385 104 54 2 14 110 869 971 1.47e-14 68.9
MsG0580027833.01.T01 AT1G47890 41.905 105 57 2 14 114 896 1000 2.11e-14 68.6
MsG0580027833.01.T01 AT3G25020 37.615 109 64 2 14 119 765 872 2.69e-14 68.2
MsG0580027833.01.T01 AT2G15042 36.792 106 64 2 14 117 302 406 4.41e-14 67.4
MsG0580027833.01.T01 AT3G25010 37.037 108 65 2 14 119 766 872 7.30e-14 67.0
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 823 919 7.63e-14 67.0
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 784 880 7.83e-14 67.0
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 756 852 8.05e-14 67.0
MsG0580027833.01.T01 AT3G28890 38.532 109 60 3 14 117 585 691 8.05e-14 67.0
MsG0580027833.01.T01 AT3G28890 38.532 109 60 3 14 117 585 691 8.05e-14 67.0
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 781 877 8.22e-14 67.0
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 566 662 8.34e-14 66.6
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 809 905 8.40e-14 66.6
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 809 905 8.40e-14 66.6
MsG0580027833.01.T01 AT5G49290 38.384 99 53 3 14 106 809 905 8.40e-14 66.6
MsG0580027833.01.T01 AT3G25010 37.037 108 65 2 14 119 797 903 1.01e-13 66.6
MsG0580027833.01.T01 AT3G23120 40.196 102 52 3 14 109 674 772 1.16e-13 66.2
MsG0580027833.01.T01 AT2G33050 37.500 104 64 1 14 117 657 759 1.44e-13 66.2
MsG0580027833.01.T01 AT2G25470 34.000 100 64 2 14 112 811 909 1.67e-13 65.9
MsG0580027833.01.T01 AT2G25470 34.000 100 64 2 14 112 854 952 1.73e-13 65.9
MsG0580027833.01.T01 AT3G05370 33.613 119 72 3 6 120 724 839 1.76e-13 65.9
MsG0580027833.01.T01 AT4G13920 37.255 102 60 1 14 115 778 875 2.23e-13 65.5
MsG0580027833.01.T01 AT5G27060 38.532 109 60 3 14 117 832 938 3.03e-13 65.1
MsG0580027833.01.T01 AT5G27060 38.532 109 60 3 14 117 831 937 3.12e-13 65.1
MsG0580027833.01.T01 AT5G27060 38.532 109 60 3 14 117 831 937 3.12e-13 65.1
MsG0580027833.01.T01 AT1G74180 55.556 54 24 0 14 67 848 901 3.90e-13 65.1
MsG0580027833.01.T01 AT1G74180 55.556 54 24 0 14 67 834 887 4.21e-13 64.7
MsG0580027833.01.T01 AT3G11080 37.383 107 63 2 14 117 819 924 5.42e-13 64.3
MsG0580027833.01.T01 AT3G11080 37.383 107 63 2 14 117 819 924 5.42e-13 64.3
MsG0580027833.01.T01 AT5G25910 37.273 110 65 2 14 120 691 799 8.52e-13 63.9
MsG0580027833.01.T01 AT1G54475 50.000 64 30 1 14 77 85 146 9.14e-13 62.4
MsG0580027833.01.T01 AT1G74190 35.455 110 67 3 12 120 842 948 2.54e-12 62.8
MsG0580027833.01.T01 AT1G71390 37.113 97 60 1 14 109 668 764 4.47e-12 62.0
MsG0580027833.01.T01 AT1G71390 37.113 97 60 1 14 109 663 759 4.51e-12 62.0
MsG0580027833.01.T01 AT1G74170 38.889 108 54 5 14 116 844 944 4.55e-12 62.0
MsG0580027833.01.T01 AT1G74170 38.889 108 54 5 14 116 912 1012 4.84e-12 61.6
MsG0580027833.01.T01 AT3G23010 38.235 102 55 2 14 109 493 592 6.91e-12 61.2
MsG0580027833.01.T01 AT1G17240 44.578 83 39 2 14 96 641 716 1.45e-11 60.5
MsG0580027833.01.T01 AT1G17240 44.578 83 39 2 14 96 646 721 1.49e-11 60.5
MsG0580027833.01.T01 AT3G53240 36.283 113 65 4 7 116 796 904 1.90e-11 60.1
MsG0580027833.01.T01 AT3G53240 36.283 113 65 4 7 116 760 868 1.95e-11 60.1
MsG0580027833.01.T01 AT3G53240 36.283 113 65 4 7 116 760 868 1.95e-11 60.1
MsG0580027833.01.T01 AT4G13880 34.615 104 61 1 14 110 620 723 4.77e-11 58.9
MsG0580027833.01.T01 AT1G17250 38.462 91 50 2 12 99 648 735 5.22e-11 58.9
MsG0580027833.01.T01 AT1G71400 36.364 99 56 2 14 108 723 818 7.48e-11 58.5

Find 37 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGAATGATTCCTATAA+GGG 0.276425 5:-69328438 MsG0580027833.01.T01:CDS
TAGCCCTGGATTTCCCTTAT+AGG 0.276490 5:+69328425 None:intergenic
GTTTAGTGAGAGGTTCAATT+TGG 0.282901 5:+69328503 None:intergenic
TGTCTTCAACAAATCAAAAT+AGG 0.295807 5:+69328220 None:intergenic
ATTTCAGAATGATTCCTATA+AGG 0.298804 5:-69328439 MsG0580027833.01.T01:CDS
AATGGTGTTTGGAATACTAT+TGG 0.372278 5:-69328277 MsG0580027833.01.T01:CDS
GGATGGAAAGCTGTGGCTAT+TGG 0.390814 5:-69328312 MsG0580027833.01.T01:CDS
CTCGCCTGTGAGTTTGTTTG+AGG 0.401125 5:+69328559 None:intergenic
CATTCTGAAATGTATTGAAC+TGG 0.421791 5:+69328451 None:intergenic
TTTGGAAAGAAATTTAAGAT+TGG 0.422710 5:+69328521 None:intergenic
GATTCCTATAAGGGAAATCC+AGG 0.442844 5:-69328429 MsG0580027833.01.T01:CDS
TATGCTAGTGGAATGGTGTT+TGG 0.447972 5:-69328288 MsG0580027833.01.T01:CDS
ATGGTGTTTGGAATACTATT+GGG 0.451204 5:-69328276 MsG0580027833.01.T01:CDS
TCAAATGAACTTGAATCTCT+TGG 0.457735 5:+69328357 None:intergenic
TTAAGATTGGTCAATGCCTC+AGG 0.459380 5:+69328534 None:intergenic
TTGGTATGATCCCCTCCAGC+TGG 0.460066 5:+69328481 None:intergenic
CCTCCAGCTGGTTTAGTGAG+AGG 0.519435 5:+69328493 None:intergenic
CTGTGAGTTTGTTTGAGGAG+AGG 0.526946 5:+69328564 None:intergenic
AAGGGAAATCCAGGGCTATG+TGG 0.529484 5:-69328420 MsG0580027833.01.T01:CDS
ACAAATCAAAATAGGCATTG+TGG 0.560450 5:+69328228 None:intergenic
CTCTCCTCAAACAAACTCAC+AGG 0.566023 5:-69328563 MsG0580027833.01.T01:CDS
AGGGAAATCCAGGGCTATGT+GGG 0.567760 5:-69328419 MsG0580027833.01.T01:CDS
TGTTCTTCATCCTTGTGACA+TGG 0.568192 5:+69328381 None:intergenic
GTATTGAACTGGTTCCCACT+TGG 0.569311 5:+69328462 None:intergenic
TCTCACTAAACCAGCTGGAG+GGG 0.569777 5:-69328491 MsG0580027833.01.T01:CDS
AAAGGTAACCCACATAGCCC+TGG 0.578517 5:+69328411 None:intergenic
GAACCTCTCACTAAACCAGC+TGG 0.582473 5:-69328496 MsG0580027833.01.T01:CDS
CTCTCACTAAACCAGCTGGA+GGG 0.589331 5:-69328492 MsG0580027833.01.T01:CDS
GTGGCTATTGGATATGCTAG+TGG 0.601788 5:-69328300 MsG0580027833.01.T01:CDS
AACTCACAGGCGAGATCCTG+AGG 0.613536 5:-69328550 MsG0580027833.01.T01:CDS
TTTATTTGGATGGAAAGCTG+TGG 0.638074 5:-69328319 MsG0580027833.01.T01:CDS
TATTGGATATGCTAGTGGAA+TGG 0.659443 5:-69328295 MsG0580027833.01.T01:CDS
CCTCTCACTAAACCAGCTGG+AGG 0.673578 5:-69328493 MsG0580027833.01.T01:CDS
TTTGTCAAAACCATGTCACA+AGG 0.677511 5:-69328391 MsG0580027833.01.T01:CDS
TGGAGGGGATCATACCAAGT+GGG 0.679419 5:-69328476 MsG0580027833.01.T01:CDS
ATTCCTATAAGGGAAATCCA+GGG 0.686842 5:-69328428 MsG0580027833.01.T01:CDS
CTGGAGGGGATCATACCAAG+TGG 0.692086 5:-69328477 MsG0580027833.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAGAATTTTTATTTGGA+TGG - Chr5:69328477-69328496 MsG0580027833.01.T01:CDS 20.0%
!!! CATGAAGAAGAATTTTTATT+TGG - Chr5:69328473-69328492 MsG0580027833.01.T01:CDS 20.0%
!!! TTTGGAAAGAAATTTAAGAT+TGG + Chr5:69328288-69328307 None:intergenic 20.0%
! ATTTCAGAATGATTCCTATA+AGG - Chr5:69328367-69328386 MsG0580027833.01.T01:CDS 25.0%
! TTTCAGAATGATTCCTATAA+GGG - Chr5:69328368-69328387 MsG0580027833.01.T01:CDS 25.0%
TCAAATGAACTTGAATCTCT+TGG + Chr5:69328452-69328471 None:intergenic 30.0%
! AATGGTGTTTGGAATACTAT+TGG - Chr5:69328529-69328548 MsG0580027833.01.T01:CDS 30.0%
! ATGGTGTTTGGAATACTATT+GGG - Chr5:69328530-69328549 MsG0580027833.01.T01:CDS 30.0%
!! CATTCTGAAATGTATTGAAC+TGG + Chr5:69328358-69328377 None:intergenic 30.0%
ATTCCTATAAGGGAAATCCA+GGG - Chr5:69328378-69328397 MsG0580027833.01.T01:CDS 35.0%
GTTTAGTGAGAGGTTCAATT+TGG + Chr5:69328306-69328325 None:intergenic 35.0%
TATTGGATATGCTAGTGGAA+TGG - Chr5:69328511-69328530 MsG0580027833.01.T01:CDS 35.0%
TTTATTTGGATGGAAAGCTG+TGG - Chr5:69328487-69328506 MsG0580027833.01.T01:CDS 35.0%
TTTGTCAAAACCATGTCACA+AGG - Chr5:69328415-69328434 MsG0580027833.01.T01:CDS 35.0%
!!! TTGTGACATGGTTTTGACAA+AGG + Chr5:69328416-69328435 None:intergenic 35.0%
GATTCCTATAAGGGAAATCC+AGG - Chr5:69328377-69328396 MsG0580027833.01.T01:CDS 40.0%
TATGCTAGTGGAATGGTGTT+TGG - Chr5:69328518-69328537 MsG0580027833.01.T01:CDS 40.0%
TGTTCTTCATCCTTGTGACA+TGG + Chr5:69328428-69328447 None:intergenic 40.0%
! TTAAGATTGGTCAATGCCTC+AGG + Chr5:69328275-69328294 None:intergenic 40.0%
CTCTCCTCAAACAAACTCAC+AGG - Chr5:69328243-69328262 MsG0580027833.01.T01:CDS 45.0%
GTGGCTATTGGATATGCTAG+TGG - Chr5:69328506-69328525 MsG0580027833.01.T01:CDS 45.0%
TAGCCCTGGATTTCCCTTAT+AGG + Chr5:69328384-69328403 None:intergenic 45.0%
! CTGTGAGTTTGTTTGAGGAG+AGG + Chr5:69328245-69328264 None:intergenic 45.0%
! GTATTGAACTGGTTCCCACT+TGG + Chr5:69328347-69328366 None:intergenic 45.0%
AAAGGTAACCCACATAGCCC+TGG + Chr5:69328398-69328417 None:intergenic 50.0%
AAGGGAAATCCAGGGCTATG+TGG - Chr5:69328386-69328405 MsG0580027833.01.T01:CDS 50.0%
AGGGAAATCCAGGGCTATGT+GGG - Chr5:69328387-69328406 MsG0580027833.01.T01:CDS 50.0%
CTCTCACTAAACCAGCTGGA+GGG - Chr5:69328314-69328333 MsG0580027833.01.T01:CDS 50.0%
GAACCTCTCACTAAACCAGC+TGG - Chr5:69328310-69328329 MsG0580027833.01.T01:CDS 50.0%
GGATGGAAAGCTGTGGCTAT+TGG - Chr5:69328494-69328513 MsG0580027833.01.T01:CDS 50.0%
TCTCACTAAACCAGCTGGAG+GGG - Chr5:69328315-69328334 MsG0580027833.01.T01:CDS 50.0%
TGGAGGGGATCATACCAAGT+GGG - Chr5:69328330-69328349 MsG0580027833.01.T01:CDS 50.0%
! CTCGCCTGTGAGTTTGTTTG+AGG + Chr5:69328250-69328269 None:intergenic 50.0%
AACTCACAGGCGAGATCCTG+AGG - Chr5:69328256-69328275 MsG0580027833.01.T01:CDS 55.0%
CCTCTCACTAAACCAGCTGG+AGG - Chr5:69328313-69328332 MsG0580027833.01.T01:CDS 55.0%
CTGGAGGGGATCATACCAAG+TGG - Chr5:69328329-69328348 MsG0580027833.01.T01:CDS 55.0%
TTGGTATGATCCCCTCCAGC+TGG + Chr5:69328328-69328347 None:intergenic 55.0%
! CCTCCAGCTGGTTTAGTGAG+AGG + Chr5:69328316-69328335 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 69328233 69328595 69328233 ID=MsG0580027833.01;Name=MsG0580027833.01
Chr5 mRNA 69328233 69328595 69328233 ID=MsG0580027833.01.T01;Parent=MsG0580027833.01;Name=MsG0580027833.01.T01;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|120
Chr5 exon 69328233 69328595 69328233 ID=MsG0580027833.01.T01:exon:4736;Parent=MsG0580027833.01.T01
Chr5 CDS 69328233 69328595 69328233 ID=MsG0580027833.01.T01:cds;Parent=MsG0580027833.01.T01
Gene Sequence

>MsG0580027833.01.T01

ATGGTTGGACCTCTCCTCAAACAAACTCACAGGCGAGATCCTGAGGCATTGACCAATCTTAAATTTCTTTCCAAATTGAACCTCTCACTAAACCAGCTGGAGGGGATCATACCAAGTGGGAACCAGTTCAATACATTTCAGAATGATTCCTATAAGGGAAATCCAGGGCTATGTGGGTTACCTTTGTCAAAACCATGTCACAAGGATGAAGAACAACCAAGAGATTCAAGTTCATTTGAGCATGAAGAAGAATTTTTATTTGGATGGAAAGCTGTGGCTATTGGATATGCTAGTGGAATGGTGTTTGGAATACTATTGGGTTACATTGTATTCTTATTTGAAAAACCACAATGCCTATTTTGA

Protein sequence

>MsG0580027833.01.T01

MVGPLLKQTHRRDPEALTNLKFLSKLNLSLNQLEGIIPSGNQFNTFQNDSYKGNPGLCGLPLSKPCHKDEEQPRDSSSFEHEEEFLFGWKAVAIGYASGMVFGILLGYIVFLFEKPQCLF*