AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022068.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022068.01.T01 MTR_4g081710 90.191 367 8 2 2 368 1 339 0.0 660
MsG0480022068.01.T01 MTR_5g041350 57.143 378 119 6 5 368 2 350 2.43e-122 357
MsG0480022068.01.T01 MTR_5g041350 54.023 261 103 5 122 368 4 261 2.26e-67 213
MsG0480022068.01.T01 MTR_2g086450 46.484 256 109 4 11 266 38 265 4.36e-65 212
MsG0480022068.01.T01 MTR_6g032990 38.205 390 177 10 11 366 35 394 9.91e-60 198
MsG0480022068.01.T01 MTR_5g041350 53.306 242 96 5 141 368 1 239 1.32e-58 190
MsG0480022068.01.T01 MTR_6g444980 46.860 207 70 6 11 212 28 199 4.37e-48 167
MsG0480022068.01.T01 MTR_5g027440 42.056 214 87 4 8 218 15 194 1.25e-44 155
MsG0480022068.01.T01 MTR_6g444980 48.235 170 51 4 11 179 28 161 3.94e-42 150
MsG0480022068.01.T01 MTR_7g088070 44.737 190 68 5 17 206 49 201 1.08e-41 147
MsG0480022068.01.T01 MTR_7g088070 44.211 190 65 5 17 206 49 197 3.22e-41 146
MsG0480022068.01.T01 MTR_2g027800 38.403 263 115 8 11 261 32 259 6.18e-41 146
MsG0480022068.01.T01 MTR_2g027860 40.476 210 87 6 18 227 49 220 1.48e-39 143
MsG0480022068.01.T01 MTR_2g027800 37.643 263 103 8 11 261 32 245 1.19e-38 140
MsG0480022068.01.T01 MTR_1g090670 38.189 254 105 9 11 260 37 242 8.44e-37 135
MsG0480022068.01.T01 MTR_7g098250 31.852 270 130 7 14 277 258 479 3.11e-32 126
MsG0480022068.01.T01 MTR_1g080330 37.766 188 72 5 14 196 171 318 2.64e-31 122
MsG0480022068.01.T01 MTR_7g115530 31.679 262 116 6 18 276 218 419 6.90e-31 122
MsG0480022068.01.T01 MTR_1g053835 35.795 176 71 3 14 188 254 388 4.41e-29 117
MsG0480022068.01.T01 MTR_7g093030 32.759 174 74 3 17 188 211 343 2.61e-25 105
MsG0480022068.01.T01 MTR_1g080330 36.842 152 54 4 14 163 171 282 6.17e-23 97.4
MsG0480022068.01.T01 MTR_7g115530 36.913 149 52 3 18 164 218 326 9.71e-23 97.8
MsG0480022068.01.T01 MTR_7g068600 33.918 171 72 4 14 181 9 141 3.85e-22 94.4
MsG0480022068.01.T01 MTR_7g115530 59.649 57 23 0 18 74 218 274 4.17e-20 89.7
MsG0480022068.01.T01 MTR_7g115530 59.649 57 23 0 18 74 218 274 1.67e-19 89.0
MsG0480022068.01.T01 MTR_7g093030 55.172 58 26 0 17 74 211 268 1.57e-18 85.5
MsG0480022068.01.T01 MTR_7g115530 61.538 52 20 0 18 69 218 269 5.91e-18 83.2
MsG0480022068.01.T01 MTR_1g053800 32.353 170 76 3 13 182 172 302 6.91e-18 84.0
MsG0480022068.01.T01 MTR_7g115530 58.491 53 22 0 18 70 218 270 3.49e-17 81.3
MsG0480022068.01.T01 MTR_1g053830 47.541 61 32 0 14 74 14 74 6.57e-17 75.9
MsG0480022068.01.T01 MTR_7g069660 55.357 56 25 0 19 74 72 127 5.54e-15 75.9
MsG0480022068.01.T01 MTR_2g023580 46.269 67 36 0 19 85 56 122 1.39e-14 73.2
MsG0480022068.01.T01 MTR_3g450310 49.180 61 31 0 18 78 19 79 1.45e-14 72.4
MsG0480022068.01.T01 MTR_1g112370 60.377 53 21 0 19 71 23 75 1.80e-14 73.9
MsG0480022068.01.T01 MTR_6g071625 55.357 56 25 0 19 74 203 258 1.92e-14 74.3
MsG0480022068.01.T01 MTR_0223s0040 58.491 53 22 0 19 71 19 71 2.47e-14 73.2
MsG0480022068.01.T01 MTR_4g121020 55.932 59 25 1 14 72 211 268 3.63e-14 74.3
MsG0480022068.01.T01 MTR_4g121020 55.932 59 25 1 14 72 107 164 3.66e-14 74.3
MsG0480022068.01.T01 MTR_4g121020 55.932 59 25 1 14 72 211 268 3.70e-14 74.3
MsG0480022068.01.T01 MTR_2g034960 52.857 70 26 2 14 77 207 275 5.23e-14 73.6
MsG0480022068.01.T01 MTR_8g066310 55.357 56 25 0 19 74 174 229 7.05e-14 72.4
MsG0480022068.01.T01 MTR_4g021790 42.529 87 39 3 18 95 168 252 7.57e-14 71.6
MsG0480022068.01.T01 MTR_5g029470 54.386 57 26 0 19 75 220 276 9.26e-14 72.4
MsG0480022068.01.T01 MTR_3g064840 54.386 57 26 0 19 75 275 331 1.52e-13 72.0
MsG0480022068.01.T01 MTR_1g021520 52.632 57 27 0 19 75 127 183 1.59e-13 70.9
MsG0480022068.01.T01 MTR_8g086410 51.786 56 27 0 19 74 110 165 1.79e-13 71.6
MsG0480022068.01.T01 MTR_2g084230 35.878 131 72 4 19 137 98 228 1.83e-13 70.9
MsG0480022068.01.T01 MTR_8g086410 51.786 56 27 0 19 74 112 167 1.84e-13 71.6
MsG0480022068.01.T01 MTR_2g084230 35.878 131 72 4 19 137 98 228 1.89e-13 71.2
MsG0480022068.01.T01 MTR_1g032570 52.542 59 27 1 14 72 127 184 2.17e-13 71.6
MsG0480022068.01.T01 MTR_1g032570 52.542 59 27 1 14 72 196 253 2.41e-13 71.6
MsG0480022068.01.T01 MTR_2g016220 53.571 56 26 0 19 74 90 145 3.03e-13 70.9
MsG0480022068.01.T01 MTR_2g016220 53.571 56 26 0 19 74 90 145 3.19e-13 70.5
MsG0480022068.01.T01 MTR_5g017980 58.182 55 23 0 18 72 193 247 1.00e-12 68.9
MsG0480022068.01.T01 MTR_8g086410 38.554 83 42 2 19 97 112 189 1.02e-12 69.3
MsG0480022068.01.T01 MTR_1g093080 58.182 55 23 0 18 72 211 265 1.07e-12 68.9
MsG0480022068.01.T01 MTR_4g131600 49.153 59 29 1 14 72 197 254 1.69e-12 68.9
MsG0480022068.01.T01 MTR_4g021855 52.727 55 25 1 18 72 168 221 3.24e-12 67.0
MsG0480022068.01.T01 MTR_2g016220 45.161 62 33 1 19 79 90 151 6.87e-12 66.6
MsG0480022068.01.T01 MTR_2g450070 49.153 59 29 1 14 72 209 266 7.59e-12 67.0
MsG0480022068.01.T01 MTR_2g450070 49.153 59 29 1 14 72 209 266 7.81e-12 67.0
MsG0480022068.01.T01 MTR_4g021760 51.852 54 25 1 18 71 169 221 1.06e-11 65.5
MsG0480022068.01.T01 MTR_7g089010 52.727 55 25 1 18 72 91 144 1.53e-11 65.1
MsG0480022068.01.T01 MTR_4g064730 43.421 76 36 2 15 84 128 202 1.92e-11 64.7
MsG0480022068.01.T01 MTR_4g086835 51.724 58 28 0 15 72 271 328 2.59e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022068.01.T01 AT1G69580 46.269 335 117 10 2 325 18 300 5.89e-78 243
MsG0480022068.01.T01 AT1G69580 45.833 336 118 11 2 325 18 301 1.09e-75 237
MsG0480022068.01.T01 AT3G04030 49.012 253 101 6 11 263 38 262 2.46e-63 207
MsG0480022068.01.T01 AT3G04030 48.221 253 102 7 11 263 38 261 3.96e-60 199
MsG0480022068.01.T01 AT5G18240 45.455 253 110 5 11 263 38 262 2.70e-59 197
MsG0480022068.01.T01 AT5G18240 45.455 253 110 5 11 263 38 262 2.70e-59 197
MsG0480022068.01.T01 AT3G04030 47.036 253 100 7 11 263 38 256 1.59e-56 189
MsG0480022068.01.T01 AT3G24120 41.339 254 113 4 11 257 34 258 7.35e-56 185
MsG0480022068.01.T01 AT5G18240 44.664 253 110 6 11 263 38 260 8.99e-56 188
MsG0480022068.01.T01 AT4G13640 43.529 255 104 6 11 258 30 251 9.61e-54 179
MsG0480022068.01.T01 AT3G24120 40.856 257 113 5 11 257 34 261 9.67e-54 179
MsG0480022068.01.T01 AT5G18240 43.478 253 109 6 11 263 38 256 1.10e-52 179
MsG0480022068.01.T01 AT5G18240 43.478 253 109 6 11 263 38 256 1.10e-52 179
MsG0480022068.01.T01 AT4G13640 43.023 258 104 7 11 258 30 254 1.13e-51 174
MsG0480022068.01.T01 AT1G79430 48.649 185 52 4 11 191 27 172 4.72e-46 161
MsG0480022068.01.T01 AT5G45580 43.094 181 77 3 12 189 1 158 1.89e-41 146
MsG0480022068.01.T01 AT5G45580 42.857 182 78 3 11 189 16 174 2.08e-41 147
MsG0480022068.01.T01 AT3G12730 43.575 179 69 4 11 188 16 163 5.74e-40 142
MsG0480022068.01.T01 AT2G01060 42.162 185 70 3 17 201 14 161 4.07e-39 141
MsG0480022068.01.T01 AT3G04030 44.393 214 91 6 50 263 1 186 4.70e-38 139
MsG0480022068.01.T01 AT3G04450 38.119 202 88 4 14 214 194 359 1.15e-32 126
MsG0480022068.01.T01 AT3G04450 38.119 202 88 4 14 214 194 359 1.15e-32 126
MsG0480022068.01.T01 AT3G04450 38.119 202 88 4 14 214 234 399 2.16e-32 126
MsG0480022068.01.T01 AT3G04030 42.056 214 90 7 50 263 1 180 1.07e-31 122
MsG0480022068.01.T01 AT5G29000 38.378 185 75 5 17 199 187 334 4.89e-31 121
MsG0480022068.01.T01 AT5G29000 38.378 185 75 5 17 199 187 334 4.89e-31 121
MsG0480022068.01.T01 AT4G28610 36.898 187 77 3 17 201 224 371 5.89e-31 122
MsG0480022068.01.T01 AT5G29000 38.378 185 75 5 17 199 230 377 1.13e-30 121
MsG0480022068.01.T01 AT5G06800 36.416 173 70 4 18 187 192 327 2.16e-28 114
MsG0480022068.01.T01 AT5G18240 38.318 214 98 6 50 263 1 180 2.43e-28 113
MsG0480022068.01.T01 AT5G06800 35.882 170 70 3 18 187 192 322 4.51e-28 113
MsG0480022068.01.T01 AT3G13040 33.953 215 103 3 14 225 237 415 2.12e-27 112
MsG0480022068.01.T01 AT3G13040 33.953 215 103 3 14 225 237 415 2.12e-27 112
MsG0480022068.01.T01 AT3G13040 33.953 215 103 3 14 225 237 415 2.12e-27 112
MsG0480022068.01.T01 AT2G20400 34.286 175 72 2 20 191 233 367 1.08e-25 107
MsG0480022068.01.T01 AT2G20400 34.857 175 70 3 20 191 233 366 3.90e-25 105
MsG0480022068.01.T01 AT1G79430 43.151 146 40 4 50 191 1 107 3.18e-23 98.6
MsG0480022068.01.T01 AT3G04450 57.377 61 26 0 14 74 234 294 1.10e-19 89.0
MsG0480022068.01.T01 AT5G29000 56.897 58 25 0 17 74 230 287 4.35e-19 87.4
MsG0480022068.01.T01 AT2G01060 36.913 149 57 3 53 201 1 112 2.37e-18 83.6
MsG0480022068.01.T01 AT5G06800 54.386 57 26 0 18 74 192 248 1.37e-17 82.4
MsG0480022068.01.T01 AT2G06020 50.000 64 32 0 11 74 79 142 8.51e-17 80.5
MsG0480022068.01.T01 AT3G12730 36.429 140 57 4 50 188 1 109 1.23e-16 77.4
MsG0480022068.01.T01 AT4G04605 38.889 108 53 3 19 119 15 116 9.44e-16 75.9
MsG0480022068.01.T01 AT1G32240 43.333 90 38 2 19 95 214 303 4.19e-15 76.3
MsG0480022068.01.T01 AT1G32240 43.333 90 38 2 19 95 214 303 5.22e-15 76.3
MsG0480022068.01.T01 AT5G16560 48.571 70 36 0 19 88 220 289 5.88e-15 76.3
MsG0480022068.01.T01 AT1G14600 56.604 53 23 0 19 71 24 76 1.14e-14 73.6
MsG0480022068.01.T01 AT4G17695 40.426 94 46 2 19 105 165 255 2.25e-14 73.6
MsG0480022068.01.T01 AT2G38300 56.604 53 23 0 19 71 55 107 5.50e-14 72.8
MsG0480022068.01.T01 AT5G42630 49.231 65 27 1 19 83 106 164 6.39e-14 70.9
MsG0480022068.01.T01 AT3G16857 56.364 55 23 1 18 72 167 220 1.04e-13 72.8
MsG0480022068.01.T01 AT2G02060 49.180 61 31 0 19 79 30 90 1.16e-13 70.9
MsG0480022068.01.T01 AT2G02060 49.180 61 31 0 19 79 30 90 1.16e-13 70.9
MsG0480022068.01.T01 AT3G16857 56.364 55 23 1 18 72 237 290 1.34e-13 72.8
MsG0480022068.01.T01 AT3G16857 56.364 55 23 1 18 72 237 290 1.35e-13 72.8
MsG0480022068.01.T01 AT5G42630 49.231 65 27 1 19 83 106 164 1.36e-13 70.9
MsG0480022068.01.T01 AT4G04580 49.153 59 30 0 19 77 15 73 1.77e-13 68.2
MsG0480022068.01.T01 AT2G42660 43.056 72 38 1 19 90 51 119 2.84e-13 69.7
MsG0480022068.01.T01 AT2G40260 49.153 59 30 0 19 77 83 141 5.50e-13 70.1
MsG0480022068.01.T01 AT3G25790 45.455 66 36 0 23 88 201 266 2.23e-12 68.2
MsG0480022068.01.T01 AT5G59570 50.000 58 28 1 15 72 138 194 2.85e-12 67.0
MsG0480022068.01.T01 AT5G59570 50.000 58 28 1 15 72 138 194 2.85e-12 67.0
MsG0480022068.01.T01 AT5G05090 52.727 55 25 1 18 72 81 134 4.72e-12 66.2
MsG0480022068.01.T01 AT3G10760 52.727 55 25 1 18 72 105 158 5.92e-12 66.6
MsG0480022068.01.T01 AT2G40970 51.724 58 27 1 15 72 102 158 8.01e-12 65.1
MsG0480022068.01.T01 AT5G58080 53.448 58 26 1 15 72 191 247 9.54e-12 67.0
MsG0480022068.01.T01 AT4G37180 50.943 53 26 0 20 72 212 264 1.42e-11 65.5
MsG0480022068.01.T01 AT4G37180 50.943 53 26 0 20 72 219 271 1.45e-11 65.5
MsG0480022068.01.T01 AT3G46640 50.909 55 26 1 18 72 144 197 1.49e-11 65.1
MsG0480022068.01.T01 AT3G46640 50.909 55 26 1 18 72 144 197 1.68e-11 65.1
MsG0480022068.01.T01 AT3G46640 50.909 55 26 1 18 72 144 197 1.68e-11 65.1
MsG0480022068.01.T01 AT2G01760 49.091 55 27 1 18 72 135 188 2.09e-11 64.7
MsG0480022068.01.T01 AT2G01760 49.091 55 27 1 18 72 200 253 2.88e-11 64.7
MsG0480022068.01.T01 AT1G67710 49.057 53 27 0 20 72 121 173 4.03e-11 64.7
MsG0480022068.01.T01 AT2G01760 49.091 55 27 1 18 72 228 281 4.21e-11 64.3
MsG0480022068.01.T01 AT1G67710 49.057 53 27 0 20 72 130 182 5.23e-11 64.3
MsG0480022068.01.T01 AT1G67710 49.057 53 27 0 20 72 195 247 5.72e-11 64.3
MsG0480022068.01.T01 AT1G25550 51.724 58 28 0 15 72 206 263 5.85e-11 63.5
MsG0480022068.01.T01 AT1G68670 50.725 69 29 1 4 72 206 269 6.24e-11 63.5
MsG0480022068.01.T01 AT5G45580 41.772 79 45 1 112 189 41 119 7.24e-11 62.0

Find 58 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAAATACTATTATAATT+TGG 0.196696 4:+67656752 None:intergenic
CTTCTGGCTCAATGGTCATT+AGG 0.209606 4:+67656720 None:intergenic
TTCTGGCTCAATGGTCATTA+GGG 0.288538 4:+67656721 None:intergenic
ATTACTCAGTGGTTTGGTTC+TGG 0.295890 4:+67657363 None:intergenic
GTTTCTGTTAGTTCTGAAAT+TGG 0.299096 4:+67656911 None:intergenic
AGTGTTCTCAGCCTCATTTA+TGG 0.303454 4:+67656775 None:intergenic
AATCTTGAGTTATTGATTCA+TGG 0.310180 4:-67657449 MsG0480022068.01.T01:CDS
CCATCTTAAAAGTCATTTAC+AGG 0.331529 4:-67657655 MsG0480022068.01.T01:intron
AGCCAGAAGGAAGGTCATTC+AGG 0.335489 4:-67656706 MsG0480022068.01.T01:CDS
TAATTGCATCAGTGAATCTT+TGG 0.343412 4:+67657850 None:intergenic
GTCCTGAATGACCTTCCTTC+TGG 0.358063 4:+67656704 None:intergenic
ACCTTGTTTGTTGTCAGAAC+AGG 0.382827 4:+67657523 None:intergenic
ATCACCCTCATCAAACTCTT+TGG 0.386936 4:+67657702 None:intergenic
TTAACTATTACTCAGTGGTT+TGG 0.396613 4:+67657357 None:intergenic
ATGAGGGTGATGGGAATTCC+AGG 0.406362 4:-67657690 MsG0480022068.01.T01:CDS
AAAGAACCAAACGCATGCTT+TGG 0.416759 4:+67657916 None:intergenic
ATGCTAAGCCTAGGTTGAAA+TGG 0.427329 4:-67657887 MsG0480022068.01.T01:CDS
AAGGCGCAGGAAGCACTTGC+AGG 0.427854 4:-67657031 MsG0480022068.01.T01:CDS
TCTTCTTCTTCTTCGACAAC+GGG 0.438944 4:-67657001 MsG0480022068.01.T01:CDS
GCAAAACCAAAGCATGCGTT+TGG 0.448457 4:-67657922 MsG0480022068.01.T01:CDS
TGACCTTCCTTCTGGCTCAA+TGG 0.468795 4:+67656712 None:intergenic
AGTTCTGAAATTGGAGAACT+AGG 0.474659 4:+67656920 None:intergenic
GAAACTTTATGAACAAATTG+AGG 0.475081 4:-67657208 MsG0480022068.01.T01:intron
ACTGATGCAATTAATCAGCT+TGG 0.488534 4:-67657840 MsG0480022068.01.T01:CDS
CAGAACAGGTTTCTACCTGT+TGG 0.489939 4:+67657537 None:intergenic
TAGACTTGGCAAAAGCCAAC+AGG 0.499299 4:-67657552 MsG0480022068.01.T01:CDS
AATGCAAATGATGGAGGAAG+TGG 0.507541 4:-67656680 MsG0480022068.01.T01:CDS
TGAGGCTCTTGAAGTACAAA+TGG 0.509949 4:-67657241 MsG0480022068.01.T01:CDS
TTCAGGACTAATGCAAATGA+TGG 0.510398 4:-67656689 MsG0480022068.01.T01:CDS
TCATGAGTCCATTTCAACCT+AGG 0.511636 4:+67657879 None:intergenic
AGATGGTACAAAGTGAGTCC+TGG 0.514393 4:+67657672 None:intergenic
CTTACAATCGGTACTAATGA+AGG 0.524871 4:-67657050 MsG0480022068.01.T01:CDS
TTTCCACTGATGCTAAGCCT+AGG 0.525101 4:-67657896 MsG0480022068.01.T01:CDS
AAGAGTTTGATGAGGGTGAT+GGG 0.525589 4:-67657699 MsG0480022068.01.T01:CDS
CAACCTAGGCTTAGCATCAG+TGG 0.529572 4:+67657893 None:intergenic
TGCAGTAGAGAAATCAGTGT+TGG 0.530962 4:-67657389 MsG0480022068.01.T01:CDS
TCAAGGAAAGTACTTACAAT+CGG 0.534694 4:-67657062 MsG0480022068.01.T01:CDS
TATGACAGTAATAGAATGAC+TGG 0.538146 4:-67657491 MsG0480022068.01.T01:CDS
AAAGAGTTTGATGAGGGTGA+TGG 0.538821 4:-67657700 MsG0480022068.01.T01:CDS
CAGTTTAGAATTGAAGCTCA+AGG 0.543693 4:-67657079 MsG0480022068.01.T01:CDS
TGAAAGCTCCGAGAGAAAAG+AGG 0.555833 4:-67656807 MsG0480022068.01.T01:CDS
GATGCAATTAATCAGCTTGG+AGG 0.562956 4:-67657837 MsG0480022068.01.T01:CDS
TTAGTTTAAACTCTGGTGAG+AGG 0.563350 4:-67656880 MsG0480022068.01.T01:CDS
GGTGAGAGGAAACAAAATAG+AGG 0.570215 4:-67656866 MsG0480022068.01.T01:CDS
ATCGGTACTAATGAAGGCGC+AGG 0.585210 4:-67657044 MsG0480022068.01.T01:CDS
TCAGAACTAACAGAAACAAG+AGG 0.597866 4:-67656905 MsG0480022068.01.T01:CDS
ATAGAAATTCAAAACAGTGA+TGG 0.607108 4:-67657416 MsG0480022068.01.T01:CDS
ACCTGTTCTGACAACAAACA+AGG 0.624931 4:-67657524 MsG0480022068.01.T01:CDS
TTATTACAGAAATATAGACT+TGG 0.629448 4:-67657566 MsG0480022068.01.T01:intron
AGGACTAATGCAAATGATGG+AGG 0.631823 4:-67656686 MsG0480022068.01.T01:CDS
AGATGTGTTGATCAACCAGA+TGG 0.635020 4:-67656623 MsG0480022068.01.T01:CDS
AACACCAAAGAGTTTGATGA+GGG 0.637512 4:-67657706 MsG0480022068.01.T01:CDS
ATGCAAATGATGGAGGAAGT+GGG 0.639201 4:-67656679 MsG0480022068.01.T01:CDS
TCTGGCTCAATGGTCATTAG+GGG 0.642002 4:+67656722 None:intergenic
TAGAAGCTTGAAGATTGCTG+AGG 0.644476 4:-67657259 MsG0480022068.01.T01:CDS
CAACACCAAAGAGTTTGATG+AGG 0.646969 4:-67657707 MsG0480022068.01.T01:CDS
TGACCATTGAGCCAGAAGGA+AGG 0.652849 4:-67656715 MsG0480022068.01.T01:CDS
CTAATGACCATTGAGCCAGA+AGG 0.679878 4:-67656719 MsG0480022068.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGAAATACTATTATAATT+TGG + Chr4:67657680-67657699 None:intergenic 15.0%
!! TTATTACAGAAATATAGACT+TGG - Chr4:67656863-67656882 MsG0480022068.01.T01:CDS 20.0%
! ATAGAAATTCAAAACAGTGA+TGG - Chr4:67657013-67657032 MsG0480022068.01.T01:CDS 25.0%
! GAAACTTTATGAACAAATTG+AGG - Chr4:67657221-67657240 MsG0480022068.01.T01:CDS 25.0%
! TCAAATTAACTATTACTCAG+TGG + Chr4:67657080-67657099 None:intergenic 25.0%
!! TAGATTTCAAGTGATGAATA+AGG - Chr4:67657281-67657300 MsG0480022068.01.T01:intron 25.0%
!! TTTTTCACACTATGTATATG+TGG - Chr4:67656693-67656712 MsG0480022068.01.T01:CDS 25.0%
!!! AATCTTGAGTTATTGATTCA+TGG - Chr4:67656980-67656999 MsG0480022068.01.T01:CDS 25.0%
!!! TTTGAGCTTATTTGATTTTC+TGG - Chr4:67656840-67656859 MsG0480022068.01.T01:CDS 25.0%
AAATATGTGGCAAAAAACTG+AGG - Chr4:67657831-67657850 MsG0480022068.01.T01:CDS 30.0%
CCATCTTAAAAGTCATTTAC+AGG - Chr4:67656774-67656793 MsG0480022068.01.T01:CDS 30.0%
GGAAAAACAAACCATAAATG+AGG - Chr4:67657643-67657662 MsG0480022068.01.T01:intron 30.0%
TAATTGCATCAGTGAATCTT+TGG + Chr4:67656582-67656601 None:intergenic 30.0%
TATGACAGTAATAGAATGAC+TGG - Chr4:67656938-67656957 MsG0480022068.01.T01:CDS 30.0%
TCATCACTTGAAATCTAGAT+AGG + Chr4:67657278-67657297 None:intergenic 30.0%
TTAACTATTACTCAGTGGTT+TGG + Chr4:67657075-67657094 None:intergenic 30.0%
! GCTCAAACTCTTATAGTTTT+TGG + Chr4:67656827-67656846 None:intergenic 30.0%
! TCAGTTTGAAACATGATTTC+AGG - Chr4:67657313-67657332 MsG0480022068.01.T01:intron 30.0%
!! CCTGTAAATGACTTTTAAGA+TGG + Chr4:67656777-67656796 None:intergenic 30.0%
!! GTTTCTGTTAGTTCTGAAAT+TGG + Chr4:67657521-67657540 None:intergenic 30.0%
!! TCAAGGAAAGTACTTACAAT+CGG - Chr4:67657367-67657386 MsG0480022068.01.T01:intron 30.0%
!! TTGTTTTTCCTCTTTTCTCT+CGG + Chr4:67657633-67657652 None:intergenic 30.0%
!!! AGAGGTTTTAGTTTAAACTC+TGG - Chr4:67657542-67657561 MsG0480022068.01.T01:CDS 30.0%
!!! AGTGCAACTATTGATTTTGA+TGG - Chr4:67657782-67657801 MsG0480022068.01.T01:intron 30.0%
AACACCAAAGAGTTTGATGA+GGG - Chr4:67656723-67656742 MsG0480022068.01.T01:CDS 35.0%
ACTGATGCAATTAATCAGCT+TGG - Chr4:67656589-67656608 MsG0480022068.01.T01:CDS 35.0%
CAACCAGATGGAAAAATATG+TGG - Chr4:67657818-67657837 MsG0480022068.01.T01:intron 35.0%
CTTACAATCGGTACTAATGA+AGG - Chr4:67657379-67657398 MsG0480022068.01.T01:CDS 35.0%
TCAGAACTAACAGAAACAAG+AGG - Chr4:67657524-67657543 MsG0480022068.01.T01:CDS 35.0%
TGGCAAAAAACTGAGGAAAT+CGG - Chr4:67657838-67657857 MsG0480022068.01.T01:CDS 35.0%
TTAGTTTAAACTCTGGTGAG+AGG - Chr4:67657549-67657568 MsG0480022068.01.T01:CDS 35.0%
TTCAGGACTAATGCAAATGA+TGG - Chr4:67657740-67657759 MsG0480022068.01.T01:intron 35.0%
TTCTTCTTCTTCTTCGACAA+CGG - Chr4:67657427-67657446 MsG0480022068.01.T01:CDS 35.0%
! CAGTTTAGAATTGAAGCTCA+AGG - Chr4:67657350-67657369 MsG0480022068.01.T01:intron 35.0%
! TGACTGGTAGTTTTCTGATT+TGG - Chr4:67656954-67656973 MsG0480022068.01.T01:CDS 35.0%
! TTGCCACATATTTTTCCATC+TGG + Chr4:67657824-67657843 None:intergenic 35.0%
!! AGTTCTGAAATTGGAGAACT+AGG + Chr4:67657512-67657531 None:intergenic 35.0%
AAAGAACCAAACGCATGCTT+TGG + Chr4:67656516-67656535 None:intergenic 40.0%
AAAGAGTTTGATGAGGGTGA+TGG - Chr4:67656729-67656748 MsG0480022068.01.T01:CDS 40.0%
AAGAGTTTGATGAGGGTGAT+GGG - Chr4:67656730-67656749 MsG0480022068.01.T01:CDS 40.0%
ACACTATGTATATGTGGCAG+AGG - Chr4:67656699-67656718 MsG0480022068.01.T01:CDS 40.0%
ACCTGTTCTGACAACAAACA+AGG - Chr4:67656905-67656924 MsG0480022068.01.T01:CDS 40.0%
AGGACTAATGCAAATGATGG+AGG - Chr4:67657743-67657762 MsG0480022068.01.T01:intron 40.0%
AGTGTTCTCAGCCTCATTTA+TGG + Chr4:67657657-67657676 None:intergenic 40.0%
ATCACCCTCATCAAACTCTT+TGG + Chr4:67656730-67656749 None:intergenic 40.0%
CAACACCAAAGAGTTTGATG+AGG - Chr4:67656722-67656741 MsG0480022068.01.T01:CDS 40.0%
GATGCAATTAATCAGCTTGG+AGG - Chr4:67656592-67656611 MsG0480022068.01.T01:CDS 40.0%
GGTGAGAGGAAACAAAATAG+AGG - Chr4:67657563-67657582 MsG0480022068.01.T01:intron 40.0%
TAGAAGCTTGAAGATTGCTG+AGG - Chr4:67657170-67657189 MsG0480022068.01.T01:intron 40.0%
TCATGAGTCCATTTCAACCT+AGG + Chr4:67656553-67656572 None:intergenic 40.0%
TCTTCTTCTTCTTCGACAAC+GGG - Chr4:67657428-67657447 MsG0480022068.01.T01:CDS 40.0%
TGAGGCTCTTGAAGTACAAA+TGG - Chr4:67657188-67657207 MsG0480022068.01.T01:intron 40.0%
TGCAGTAGAGAAATCAGTGT+TGG - Chr4:67657040-67657059 MsG0480022068.01.T01:CDS 40.0%
! AATGCAAATGATGGAGGAAG+TGG - Chr4:67657749-67657768 MsG0480022068.01.T01:intron 40.0%
! AGATGTGTTGATCAACCAGA+TGG - Chr4:67657806-67657825 MsG0480022068.01.T01:intron 40.0%
! ATGCAAATGATGGAGGAAGT+GGG - Chr4:67657750-67657769 MsG0480022068.01.T01:intron 40.0%
! ATGCTAAGCCTAGGTTGAAA+TGG - Chr4:67656542-67656561 MsG0480022068.01.T01:CDS 40.0%
!! ACCTTGTTTGTTGTCAGAAC+AGG + Chr4:67656909-67656928 None:intergenic 40.0%
!! ATTACTCAGTGGTTTGGTTC+TGG + Chr4:67657069-67657088 None:intergenic 40.0%
!! TTCTGGCTCAATGGTCATTA+GGG + Chr4:67657711-67657730 None:intergenic 40.0%
AGATGGTACAAAGTGAGTCC+TGG + Chr4:67656760-67656779 None:intergenic 45.0%
CAGAACAGGTTTCTACCTGT+TGG + Chr4:67656895-67656914 None:intergenic 45.0%
CTAATGACCATTGAGCCAGA+AGG - Chr4:67657710-67657729 MsG0480022068.01.T01:CDS 45.0%
GCAAAACCAAAGCATGCGTT+TGG - Chr4:67656507-67656526 MsG0480022068.01.T01:CDS 45.0%
TAGACTTGGCAAAAGCCAAC+AGG - Chr4:67656877-67656896 MsG0480022068.01.T01:CDS 45.0%
TGAAAGCTCCGAGAGAAAAG+AGG - Chr4:67657622-67657641 MsG0480022068.01.T01:intron 45.0%
TTTCCACTGATGCTAAGCCT+AGG - Chr4:67656533-67656552 MsG0480022068.01.T01:CDS 45.0%
! TCTGGCTCAATGGTCATTAG+GGG + Chr4:67657710-67657729 None:intergenic 45.0%
!! CTTCTGGCTCAATGGTCATT+AGG + Chr4:67657712-67657731 None:intergenic 45.0%
AGCCAGAAGGAAGGTCATTC+AGG - Chr4:67657723-67657742 MsG0480022068.01.T01:intron 50.0%
CAACCTAGGCTTAGCATCAG+TGG + Chr4:67656539-67656558 None:intergenic 50.0%
GTCCTGAATGACCTTCCTTC+TGG + Chr4:67657728-67657747 None:intergenic 50.0%
TGACCATTGAGCCAGAAGGA+AGG - Chr4:67657714-67657733 MsG0480022068.01.T01:intron 50.0%
! ATCGGTACTAATGAAGGCGC+AGG - Chr4:67657385-67657404 MsG0480022068.01.T01:CDS 50.0%
!! ATGAGGGTGATGGGAATTCC+AGG - Chr4:67656739-67656758 MsG0480022068.01.T01:CDS 50.0%
!! TGACCTTCCTTCTGGCTCAA+TGG + Chr4:67657720-67657739 None:intergenic 50.0%
!! AAGGCGCAGGAAGCACTTGC+AGG - Chr4:67657398-67657417 MsG0480022068.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 67656496 67657955 67656496 ID=MsG0480022068.01;Name=MsG0480022068.01
Chr4 mRNA 67656496 67657955 67656496 ID=MsG0480022068.01.T01;Parent=MsG0480022068.01;Name=MsG0480022068.01.T01;_AED=0.33;_eAED=0.35;_QI=0|0|0|1|1|1|5|0|368
Chr4 exon 67657829 67657955 67657829 ID=MsG0480022068.01.T01:exon:21200;Parent=MsG0480022068.01.T01
Chr4 exon 67657656 67657732 67657656 ID=MsG0480022068.01.T01:exon:21199;Parent=MsG0480022068.01.T01
Chr4 exon 67657368 67657579 67657368 ID=MsG0480022068.01.T01:exon:21198;Parent=MsG0480022068.01.T01
Chr4 exon 67657209 67657278 67657209 ID=MsG0480022068.01.T01:exon:21197;Parent=MsG0480022068.01.T01
Chr4 exon 67656496 67657116 67656496 ID=MsG0480022068.01.T01:exon:21196;Parent=MsG0480022068.01.T01
Chr4 CDS 67657829 67657955 67657829 ID=MsG0480022068.01.T01:cds;Parent=MsG0480022068.01.T01
Chr4 CDS 67657656 67657732 67657656 ID=MsG0480022068.01.T01:cds;Parent=MsG0480022068.01.T01
Chr4 CDS 67657368 67657579 67657368 ID=MsG0480022068.01.T01:cds;Parent=MsG0480022068.01.T01
Chr4 CDS 67657209 67657278 67657209 ID=MsG0480022068.01.T01:cds;Parent=MsG0480022068.01.T01
Chr4 CDS 67656496 67657116 67656496 ID=MsG0480022068.01.T01:cds;Parent=MsG0480022068.01.T01
Gene Sequence

>MsG0480022068.01.T01

CAAATGGATCAGCAAAACCAAAGCATGCGTTTGGTTCTTTCCACTGATGCTAAGCCTAGGTTGAAATGGACTCATGAACTTCACCAAAGATTCACTGATGCAATTAATCAGCTTGGAGGTGCAGAAAAGGCAACACCAAAGAGTTTGATGAGGGTGATGGGAATTCCAGGACTCACTTTGTACCATCTTAAAAGTCATTTACAGAAATATAGACTTGGCAAAAGCCAACAGGTAGAAACCTGTTCTGACAACAAACAAGGTGAGTTACTGTATGACAGTAATAGAATGACTGGTAGTTTTCTGATTTGGCATAATCTTGAGTTATTGATTCATGGTGCAGATTACATAGAAATTCAAAACAGTGATGGTCAATGCAGTAGAGAAATCAGTGTTGGAAACCAGAACCAAACCACTGAAAGCTTGAAGATTGCTGAGGCTCTTGAAGTACAAATGGAAGTACAAAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATTGAAGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAGGAAGCACTTGCAGGATATAGTTCTTCTTCTTCTTCGACAACGGGTGTAGAACATGCTAAAGCTGAACTTTCTCAGTTATTATCAATAATCAACAATGCATGTCCTAGTTCTCCAATTTCAGAACTAACAGAAACAAGAGGTTTTAGTTTAAACTCTGGTGAGAGGAAACAAAATAGAGGAACTATGTGTTCTTTAGAAAGTTCTCTTACATCATCTGAAAGCTCCGAGAGAAAAGAGGAAAAACAAACCATAAATGAGGCTGAGAACACTCCAAATTATAATAGTATTTCAGTTGAATTGCCCCTAATGACCATTGAGCCAGAAGGAAGGTCATTCAGGACTAATGCAAATGATGGAGGAAGTGGGAGAAAGAGAAGTGCAACTATTGATTTTGATGGTAGATGTGTTGATCAACCAGATGGAAAAATATGTGGCAAAAAACTGAGGAAATCGGAGTTTTCACAAATGCTTGACTTGAACAGCAAGTATGAGAGAGACATTGACTCAAGTTCATTAGAAATAGATTTAAATTGCAGTTCAAGCTTTTAG

Protein sequence

>MsG0480022068.01.T01

QMDQQNQSMRLVLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQVETCSDNKQGELLYDSNRMTGSFLIWHNLELLIHGADYIEIQNSDGQCSREISVGNQNQTTESLKIAEALEVQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALAGYSSSSSSTTGVEHAKAELSQLLSIINNACPSSPISELTETRGFSLNSGERKQNRGTMCSLESSLTSSESSERKEEKQTINEAENTPNYNSISVELPLMTIEPEGRSFRTNANDGGSGRKRSATIDFDGRCVDQPDGKICGKKLRKSEFSQMLDLNSKYERDIDSSSLEIDLNCSSSF*