AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046830.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046830.01.T01 MTR_4g115580 99.180 366 2 1 1 366 1 365 0.0 753
MsG0880046830.01.T01 MTR_5g015270 46.000 350 159 6 42 363 28 375 3.46e-97 294
MsG0880046830.01.T01 MTR_5g015270 45.480 354 159 7 42 363 28 379 2.01e-96 292
MsG0880046830.01.T01 MTR_3g103240 41.371 394 184 6 17 363 3 396 2.26e-96 292
MsG0880046830.01.T01 MTR_0066s0050 57.459 181 77 0 178 358 1 181 3.74e-71 221
MsG0880046830.01.T01 MTR_0066s0040 58.730 63 26 0 39 101 4 66 4.82e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046830.01.T01 AT5G20270 55.000 360 115 3 4 363 20 332 9.56e-139 398
MsG0880046830.01.T01 AT4G37680 43.401 394 179 9 10 363 1 390 1.72e-98 298
MsG0880046830.01.T01 AT4G37680 43.401 394 179 9 10 363 1 390 1.72e-98 298
MsG0880046830.01.T01 AT2G24150 42.614 352 179 5 10 356 1 334 8.43e-98 294
MsG0880046830.01.T01 AT4G37680 43.750 384 174 8 18 363 6 385 1.60e-97 295
MsG0880046830.01.T01 AT4G37680 43.750 384 174 8 18 363 6 385 1.60e-97 295
MsG0880046830.01.T01 AT4G37680 43.750 384 174 8 18 363 6 385 1.60e-97 295
MsG0880046830.01.T01 AT4G30850 44.543 339 163 4 37 358 20 350 1.37e-96 291
MsG0880046830.01.T01 AT4G30850 44.543 339 163 4 37 358 20 350 1.37e-96 291
MsG0880046830.01.T01 AT4G38320 43.164 373 170 8 18 352 6 374 2.20e-91 279
MsG0880046830.01.T01 AT2G24150 51.295 193 94 0 165 357 54 246 1.73e-69 219
MsG0880046830.01.T01 AT2G40710 53.763 93 43 0 271 363 1 93 3.89e-29 108
MsG0880046830.01.T01 AT4G38290 59.459 74 29 1 291 363 35 108 1.88e-25 99.4

Find 99 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAAATATTTCATATTT+TGG 0.119405 8:-78842779 MsG0880046830.01.T01:CDS
GTTGGATTTATTCTGTTTCT+TGG 0.171486 8:-78844645 MsG0880046830.01.T01:CDS
TTCATGCTTGTGTTGCAAAT+TGG 0.232497 8:-78842936 MsG0880046830.01.T01:CDS
TGGCCATTCTTTGTCTTCTT+AGG 0.247470 8:-78843273 MsG0880046830.01.T01:CDS
CAACCAGGCCTCCATCTTTC+CGG 0.258607 8:+78842823 None:intergenic
GTACATAGGTCTATCTCTTC+AGG 0.282931 8:-78843576 MsG0880046830.01.T01:intron
CCTTGCTATAACAAATTCTA+AGG 0.299308 8:+78843296 None:intergenic
GTGTGACAAGGCTTAAATTA+AGG 0.306890 8:-78842689 MsG0880046830.01.T01:exon
AACACAAACAACCTTTGATT+TGG 0.307947 8:-78845116 MsG0880046830.01.T01:five_prime_UTR
ATGGCATTGTCTTACTTGAT+AGG 0.313226 8:-78842871 MsG0880046830.01.T01:CDS
CACAATAGTTCATCTCTGTT+TGG 0.326565 8:+78845067 None:intergenic
CACATGAGGCTTCATCAAAT+TGG 0.331471 8:+78844611 None:intergenic
TTGGATTTATTCTGTTTCTT+GGG 0.332306 8:-78844644 MsG0880046830.01.T01:CDS
AATCTATTCTTAACAGAAAC+AGG 0.333630 8:+78843181 None:intergenic
CTAGAATGGCGTGACACTTT+TGG 0.338813 8:-78842712 MsG0880046830.01.T01:CDS
AGCTATGTTGTTCTGTTCAA+TGG 0.349396 8:-78842983 MsG0880046830.01.T01:CDS
TTCTGATAGCATCAAAGTTC+TGG 0.354226 8:-78843538 MsG0880046830.01.T01:intron
TCGAAATGCGCGGTGTTTAC+CGG 0.364215 8:+78843005 None:intergenic
CGACATCTTTATATTATCCT+TGG 0.366302 8:+78844975 None:intergenic
TCATGCTTGTGTTGCAAATT+GGG 0.369516 8:-78842935 MsG0880046830.01.T01:CDS
TCATTATCCTTCATATAATT+CGG 0.373033 8:+78844895 None:intergenic
CCATTGCCAATGGTAATTGA+TGG 0.375582 8:+78843328 None:intergenic
ATAATGAAACTTTGAATGTT+TGG 0.388241 8:-78844804 MsG0880046830.01.T01:CDS
AGCTTCTTTCAAAGGCCAAT+TGG 0.392420 8:+78844849 None:intergenic
TATTGAATAACAAATTCAAA+TGG 0.401182 8:+78842438 None:intergenic
GTTCTATGTGACGCGGATAC+CGG 0.430826 8:-78842842 MsG0880046830.01.T01:CDS
CTTTCTTCAGTCTCTTTCGT+TGG 0.437703 8:-78844828 MsG0880046830.01.T01:CDS
TATGTATGTGCAGCATTAGA+TGG 0.438102 8:-78842611 MsG0880046830.01.T01:three_prime_UTR
CCTGGTTGGTTTGATTTAGC+AGG 0.442111 8:-78842808 MsG0880046830.01.T01:CDS
TCTGTTTCTTGGGTTGACCT+TGG 0.451875 8:-78844634 MsG0880046830.01.T01:CDS
TACGTTATTACAGAGCCAAT+TGG 0.471460 8:-78844864 MsG0880046830.01.T01:CDS
AGATGGATTCTCTGCATTGT+TGG 0.472351 8:-78842594 MsG0880046830.01.T01:three_prime_UTR
GCTATGTTGTTCTGTTCAAT+GGG 0.476457 8:-78842982 MsG0880046830.01.T01:CDS
CCATTCTTTGTCTTCTTAGG+TGG 0.483745 8:-78843270 MsG0880046830.01.T01:CDS
TAGTCCCATGGCTGTAATAC+CGG 0.489415 8:+78843065 None:intergenic
CTACACTTAAAATGCTAGAA+TGG 0.493476 8:-78842726 MsG0880046830.01.T01:CDS
CAGAAACAGGTTTAAGTCAT+GGG 0.494110 8:+78843194 None:intergenic
CGGAAAGATGGAGGCCTGGT+TGG 0.498832 8:-78842822 MsG0880046830.01.T01:CDS
CTGAAGAAAGCTTCTTTCAA+AGG 0.500853 8:+78844841 None:intergenic
ATCTCTTACAACAATTTACA+AGG 0.502630 8:-78844584 MsG0880046830.01.T01:intron
TGGCATTGTCTTACTTGATA+GGG 0.509976 8:-78842870 MsG0880046830.01.T01:CDS
ATTGAATAACAAATTCAAAT+GGG 0.512716 8:+78842439 None:intergenic
ACAGAAACAGGTTTAAGTCA+TGG 0.515069 8:+78843193 None:intergenic
TTTAAACCATCAATTACCAT+TGG 0.515618 8:-78843334 MsG0880046830.01.T01:CDS
CTTTCCCCATCACTTTCTAC+CGG 0.516838 8:-78843024 MsG0880046830.01.T01:CDS
GGTGGCAAATGCTGCTAGAG+AGG 0.518257 8:+78843232 None:intergenic
CTGTTAAGAATAGATTATGT+CGG 0.524523 8:-78843174 MsG0880046830.01.T01:CDS
AATAACAAATTCAAATGGGA+GGG 0.527564 8:+78842443 None:intergenic
TGGGGAAAGCAATGTTACTA+TGG 0.530611 8:+78843038 None:intergenic
TGACGCGGATACCGGAAAGA+TGG 0.537670 8:-78842834 MsG0880046830.01.T01:CDS
CCTTAGAATTTGTTATAGCA+AGG 0.538068 8:-78843296 MsG0880046830.01.T01:CDS
GTTTACCGGTAGAAAGTGAT+GGG 0.539453 8:+78843019 None:intergenic
ATTTCTCTGACTTGGTTGTG+TGG 0.539970 8:+78845210 None:intergenic
CCATCAATTACCATTGGCAA+TGG 0.541784 8:-78843328 MsG0880046830.01.T01:CDS
CCACCTAAGAAGACAAAGAA+TGG 0.542364 8:+78843270 None:intergenic
GAGCATATATTTCTCTGACT+TGG 0.546616 8:+78845202 None:intergenic
ATATAAAGATGTCGCATGAT+CGG 0.549561 8:-78844966 MsG0880046830.01.T01:CDS
AGGAAAACATAGTAAATCTG+AGG 0.556599 8:+78843120 None:intergenic
ATCAAACAAAACCAAATCAA+AGG 0.558711 8:+78845105 None:intergenic
CATGCTTGTGTTGCAAATTG+GGG 0.564814 8:-78842934 MsG0880046830.01.T01:CDS
TGTTTACCGGTAGAAAGTGA+TGG 0.568335 8:+78843018 None:intergenic
ATACCGGAAAGATGGAGGCC+TGG 0.568351 8:-78842826 MsG0880046830.01.T01:CDS
ATAACAAATTCAAATGGGAG+GGG 0.569382 8:+78842444 None:intergenic
CCTAGCCGGTATTACAGCCA+TGG 0.573786 8:-78843070 MsG0880046830.01.T01:CDS
GCAACACAAGCATGAACTGC+AGG 0.575233 8:+78842943 None:intergenic
CTTGGACTGTGTAAAAGACA+AGG 0.577522 8:+78844993 None:intergenic
GATTCAACTTCCATTGCCAA+TGG 0.580416 8:+78843318 None:intergenic
GTGTGGCTAAATGTTGATGA+TGG 0.583455 8:+78845227 None:intergenic
CATGGGAGTGACATGAAAAG+AGG 0.583926 8:+78843211 None:intergenic
GGAGCTACCGAATTATATGA+AGG 0.585057 8:-78844902 MsG0880046830.01.T01:CDS
TAACAAATTCAAATGGGAGG+GGG 0.586409 8:+78842445 None:intergenic
TGGCAACTCATCTACCTAGC+CGG 0.586984 8:-78843084 MsG0880046830.01.T01:CDS
TGTGTTGTCAAGAGGAACAA+AGG 0.596024 8:-78845036 MsG0880046830.01.T01:CDS
GTTGCCAATGAGGTTGACAT+AGG 0.600058 8:+78843100 None:intergenic
ATAATTACAACTCAATTCAG+AGG 0.600893 8:-78842553 MsG0880046830.01.T01:three_prime_UTR
CCATGGCTGTAATACCGGCT+AGG 0.606682 8:+78843070 None:intergenic
GGAAAACATAGTAAATCTGA+GGG 0.611187 8:+78843121 None:intergenic
GAATAACAAATTCAAATGGG+AGG 0.614454 8:+78842442 None:intergenic
TGTAAGAGATCCACCACATG+AGG 0.615952 8:+78844597 None:intergenic
TAGAATTTGTTATAGCAAGG+TGG 0.617513 8:-78843293 MsG0880046830.01.T01:CDS
AGGTAGATGAGTTGCCAATG+AGG 0.623505 8:+78843090 None:intergenic
ATGTCGCATGATCGGAACAA+AGG 0.623538 8:-78844958 MsG0880046830.01.T01:CDS
CGCGGATACCGGAAAGATGG+AGG 0.624928 8:-78842831 MsG0880046830.01.T01:CDS
CCTGCTAAATCAAACCAACC+AGG 0.625235 8:+78842808 None:intergenic
AGACAAATTGTGTTGTCAAG+AGG 0.634394 8:-78845044 MsG0880046830.01.T01:CDS
TTTGATGAAGCCTCATGTGG+TGG 0.642283 8:-78844607 MsG0880046830.01.T01:CDS
ACTAGCATATGAATGTGTCA+TGG 0.642425 8:-78842890 MsG0880046830.01.T01:CDS
ACAACATAGCTCGAAATGCG+CGG 0.643746 8:+78842995 None:intergenic
CTAGCCGGTATTACAGCCAT+GGG 0.645941 8:-78843069 MsG0880046830.01.T01:CDS
GTAAATCTGAGGGAAGAATG+AGG 0.646981 8:+78843131 None:intergenic
GGGAGTGACATGAAAAGAGG+TGG 0.647977 8:+78843214 None:intergenic
AGGCTTCATCAAATTGGCCA+AGG 0.660901 8:+78844617 None:intergenic
TACTATGGTGAATAGTCCCA+TGG 0.663061 8:+78843053 None:intergenic
CATAGGTCTATCTCTTCAGG+TGG 0.665575 8:-78843573 MsG0880046830.01.T01:intron
CAATTTGATGAAGCCTCATG+TGG 0.668778 8:-78844610 MsG0880046830.01.T01:CDS
GGACTTTGTTCTATGTGACG+CGG 0.692634 8:-78842849 MsG0880046830.01.T01:CDS
GTTGTCAAGAGGAACAAAGG+AGG 0.716326 8:-78845033 MsG0880046830.01.T01:CDS
TTTACCGGTAGAAAGTGATG+GGG 0.740060 8:+78843020 None:intergenic
GCTAGTGTAACATTGCGTCG+AGG 0.746159 8:+78842907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTATTTAGTTTTCAAT+TGG + Chr8:78843597-78843616 None:intergenic 10.0%
!! ATTGAATAACAAATTCAAAT+GGG + Chr8:78845218-78845237 None:intergenic 15.0%
!! CTAAAAATTGTATGTTTATA+GGG - Chr8:78843345-78843364 MsG0880046830.01.T01:CDS 15.0%
!! TATTGAATAACAAATTCAAA+TGG + Chr8:78845219-78845238 None:intergenic 15.0%
!!! AAATTTTATTAGCAGAAATT+CGG - Chr8:78843611-78843630 MsG0880046830.01.T01:intron 15.0%
!!! TCATCAAATATTTCATATTT+TGG - Chr8:78844875-78844894 MsG0880046830.01.T01:CDS 15.0%
!!! TGTTTTTATATTAGTCAATT+TGG - Chr8:78843968-78843987 MsG0880046830.01.T01:intron 15.0%
!!! TTATTTAACATTTTGATGAA+TGG + Chr8:78845133-78845152 None:intergenic 15.0%
!! ATAATGAAACTTTGAATGTT+TGG - Chr8:78842850-78842869 MsG0880046830.01.T01:CDS 20.0%
!! GCTAAAAATTGTATGTTTAT+AGG - Chr8:78843344-78843363 MsG0880046830.01.T01:CDS 20.0%
!! TCATTATCCTTCATATAATT+CGG + Chr8:78842762-78842781 None:intergenic 20.0%
!! TTATTCAAAAATGAAGATGA+TGG + Chr8:78842477-78842496 None:intergenic 20.0%
!! TTCGGAAAACTAAATAAATT+TGG - Chr8:78843629-78843648 MsG0880046830.01.T01:intron 20.0%
!!! AATATTTCATATTTTGGTTG+TGG - Chr8:78844881-78844900 MsG0880046830.01.T01:CDS 20.0%
!!! ATTGGTTTAAATTCAAGTTT+AGG - Chr8:78843799-78843818 MsG0880046830.01.T01:intron 20.0%
!!! CATATTATCTTTTTGTACAT+AGG - Chr8:78844064-78844083 MsG0880046830.01.T01:intron 20.0%
!!! TATTTAGTTTTCAATTGGTA+AGG + Chr8:78843592-78843611 None:intergenic 20.0%
!!! TTGTTTACTTTTAACTTTAG+AGG - Chr8:78843539-78843558 MsG0880046830.01.T01:CDS 20.0%
! AACAATAACAACTAGATCTT+GGG - Chr8:78843774-78843793 MsG0880046830.01.T01:intron 25.0%
! AATAACAAATTCAAATGGGA+GGG + Chr8:78845214-78845233 None:intergenic 25.0%
! AATCTATTCTTAACAGAAAC+AGG + Chr8:78844476-78844495 None:intergenic 25.0%
! ACAAAACTAGAAGCTAATAT+TGG + Chr8:78843938-78843957 None:intergenic 25.0%
! ATAATTACAACTCAATTCAG+AGG - Chr8:78845101-78845120 MsG0880046830.01.T01:five_prime_UTR 25.0%
! ATCAAACAAAACCAAATCAA+AGG + Chr8:78842552-78842571 None:intergenic 25.0%
! ATCTCTTACAACAATTTACA+AGG - Chr8:78843070-78843089 MsG0880046830.01.T01:CDS 25.0%
! CTGTTAAGAATAGATTATGT+CGG - Chr8:78844480-78844499 MsG0880046830.01.T01:intron 25.0%
! TAACAATAACAACTAGATCT+TGG - Chr8:78843773-78843792 MsG0880046830.01.T01:intron 25.0%
! TATATTAGTCAATTTGGATG+AGG - Chr8:78843974-78843993 MsG0880046830.01.T01:intron 25.0%
! TTAATAAATTGAGTTACCGA+CGG - Chr8:78844165-78844184 MsG0880046830.01.T01:intron 25.0%
! TTTAAACCATCAATTACCAT+TGG - Chr8:78844320-78844339 MsG0880046830.01.T01:intron 25.0%
! TTTATGTGTTTATATGTGAG+AGG - Chr8:78843127-78843146 MsG0880046830.01.T01:CDS 25.0%
!! ACATGTAATTAACTTGAACA+AGG - Chr8:78843878-78843897 MsG0880046830.01.T01:intron 25.0%
!! CATGTAATTAACTTGAACAA+GGG - Chr8:78843879-78843898 MsG0880046830.01.T01:intron 25.0%
!! TTGGATTTATTCTGTTTCTT+GGG - Chr8:78843010-78843029 MsG0880046830.01.T01:CDS 25.0%
!! TTTGGATGAGGATTTTTATT+AGG - Chr8:78843986-78844005 MsG0880046830.01.T01:intron 25.0%
!!! AACATACAATTTTTAGCACT+AGG + Chr8:78843341-78843360 None:intergenic 25.0%
!!! AGAAGTCGATTTCATTTTTT+CGG + Chr8:78844201-78844220 None:intergenic 25.0%
!!! TGATTTGGTTTTGTTTGATT+TGG - Chr8:78842553-78842572 MsG0880046830.01.T01:three_prime_UTR 25.0%
AAAGAATAAGAGAACCAATC+TGG - Chr8:78843176-78843195 MsG0880046830.01.T01:CDS 30.0%
AACACAAACAACCTTTGATT+TGG - Chr8:78842538-78842557 MsG0880046830.01.T01:three_prime_UTR 30.0%
AAGCAAACATGACATGAAAA+TGG - Chr8:78843695-78843714 MsG0880046830.01.T01:intron 30.0%
ACAATAACAACTAGATCTTG+GGG - Chr8:78843775-78843794 MsG0880046830.01.T01:intron 30.0%
AGGAAAACATAGTAAATCTG+AGG + Chr8:78844537-78844556 None:intergenic 30.0%
ATAACAAATTCAAATGGGAG+GGG + Chr8:78845213-78845232 None:intergenic 30.0%
ATATAAAGATGTCGCATGAT+CGG - Chr8:78842688-78842707 MsG0880046830.01.T01:exon 30.0%
ATCCAACTAAATGTCTGAAA+AGG + Chr8:78842996-78843015 None:intergenic 30.0%
ATGACATGAAAATGGTTTCT+TGG - Chr8:78843703-78843722 MsG0880046830.01.T01:intron 30.0%
CATAGAAACTTTAGTACCAT+TGG + Chr8:78843845-78843864 None:intergenic 30.0%
CGACATCTTTATATTATCCT+TGG + Chr8:78842682-78842701 None:intergenic 30.0%
CTACACTTAAAATGCTAGAA+TGG - Chr8:78844928-78844947 MsG0880046830.01.T01:CDS 30.0%
GAATAACAAATTCAAATGGG+AGG + Chr8:78845215-78845234 None:intergenic 30.0%
GCAAAATTAGTTGAGAATTG+TGG + Chr8:78844045-78844064 None:intergenic 30.0%
GGAAAACATAGTAAATCTGA+GGG + Chr8:78844536-78844555 None:intergenic 30.0%
TGACAATGTAAGAATTTGCA+GGG - Chr8:78844279-78844298 MsG0880046830.01.T01:intron 30.0%
! CCTTGCTATAACAAATTCTA+AGG + Chr8:78844361-78844380 None:intergenic 30.0%
! GTTGGATTTATTCTGTTTCT+TGG - Chr8:78843009-78843028 MsG0880046830.01.T01:CDS 30.0%
!! CCTTAGAATTTGTTATAGCA+AGG - Chr8:78844358-78844377 MsG0880046830.01.T01:intron 30.0%
!! TAGAATTTGTTATAGCAAGG+TGG - Chr8:78844361-78844380 MsG0880046830.01.T01:intron 30.0%
!!! TTTCATATTTTGGTTGTGGT+TGG - Chr8:78844885-78844904 MsG0880046830.01.T01:CDS 30.0%
!!! TTTTTGGTTTTCATTCTGTC+TGG - Chr8:78842920-78842939 MsG0880046830.01.T01:CDS 30.0%
AACGCTTAGCAACGAAATTA+TGG - Chr8:78844236-78844255 MsG0880046830.01.T01:intron 35.0%
ACACCTTATACAATACACTC+TGG - Chr8:78843315-78843334 MsG0880046830.01.T01:CDS 35.0%
ACAGAAACAGGTTTAAGTCA+TGG + Chr8:78844464-78844483 None:intergenic 35.0%
ACTAGCATATGAATGTGTCA+TGG - Chr8:78844764-78844783 MsG0880046830.01.T01:intron 35.0%
AGACAAATTGTGTTGTCAAG+AGG - Chr8:78842610-78842629 MsG0880046830.01.T01:three_prime_UTR 35.0%
AGCTATGTTGTTCTGTTCAA+TGG - Chr8:78844671-78844690 MsG0880046830.01.T01:intron 35.0%
ATGGCATTGTCTTACTTGAT+AGG - Chr8:78844783-78844802 MsG0880046830.01.T01:intron 35.0%
ATGTAAGAATTTGCAGGGAA+CGG - Chr8:78844284-78844303 MsG0880046830.01.T01:intron 35.0%
CACAATAGTTCATCTCTGTT+TGG + Chr8:78842590-78842609 None:intergenic 35.0%
CAGAAACAGGTTTAAGTCAT+GGG + Chr8:78844463-78844482 None:intergenic 35.0%
CTGAAGAAAGCTTCTTTCAA+AGG + Chr8:78842816-78842835 None:intergenic 35.0%
CTGACAATGTAAGAATTTGC+AGG - Chr8:78844278-78844297 MsG0880046830.01.T01:intron 35.0%
CTTAGCAACGAAATTATGGA+CGG - Chr8:78844240-78844259 MsG0880046830.01.T01:intron 35.0%
GAGCATATATTTCTCTGACT+TGG + Chr8:78842455-78842474 None:intergenic 35.0%
GCTATGTTGTTCTGTTCAAT+GGG - Chr8:78844672-78844691 MsG0880046830.01.T01:intron 35.0%
GTGTGACAAGGCTTAAATTA+AGG - Chr8:78844965-78844984 MsG0880046830.01.T01:CDS 35.0%
TAACAAATTCAAATGGGAGG+GGG + Chr8:78845212-78845231 None:intergenic 35.0%
TACGTTATTACAGAGCCAAT+TGG - Chr8:78842790-78842809 MsG0880046830.01.T01:CDS 35.0%
TATGTATGTGCAGCATTAGA+TGG - Chr8:78845043-78845062 MsG0880046830.01.T01:CDS 35.0%
TCATGCTTGTGTTGCAAATT+GGG - Chr8:78844719-78844738 MsG0880046830.01.T01:intron 35.0%
TGGCATTGTCTTACTTGATA+GGG - Chr8:78844784-78844803 MsG0880046830.01.T01:intron 35.0%
TTCAATTGGTAAGGTTACCA+AGG + Chr8:78843583-78843602 None:intergenic 35.0%
TTCATGCTTGTGTTGCAAAT+TGG - Chr8:78844718-78844737 MsG0880046830.01.T01:intron 35.0%
TTCTGATAGCATCAAAGTTC+TGG - Chr8:78844116-78844135 MsG0880046830.01.T01:intron 35.0%
! ATGCTTTCTGAGAAATGTTG+AGG + Chr8:78843204-78843223 None:intergenic 35.0%
! TGCCTTTTCAGACATTTAGT+TGG - Chr8:78842991-78843010 MsG0880046830.01.T01:CDS 35.0%
! TTACGCTCTTGTGTCTTTTA+TGG - Chr8:78842731-78842750 MsG0880046830.01.T01:CDS 35.0%
! TTCTGTTCAATGGGACTTTT+CGG - Chr8:78844681-78844700 MsG0880046830.01.T01:intron 35.0%
! TTTTCCTATGTCAACCTCAT+TGG - Chr8:78844550-78844569 MsG0880046830.01.T01:intron 35.0%
!! AGTTTCTATGCAGTTTGTTG+TGG - Chr8:78843855-78843874 MsG0880046830.01.T01:intron 35.0%
!! TCTGTCTGGTGTTTTTGATT+AGG - Chr8:78842934-78842953 MsG0880046830.01.T01:CDS 35.0%
!!! ACTTTTAACTTTAGAGGAGC+TGG - Chr8:78843545-78843564 MsG0880046830.01.T01:CDS 35.0%
ACAACTAGATCTTGGGGAAT+TGG - Chr8:78843781-78843800 MsG0880046830.01.T01:intron 40.0%
AGCTTCTTTCAAAGGCCAAT+TGG + Chr8:78842808-78842827 None:intergenic 40.0%
AGGCCAGAGTGTATTGTATA+AGG + Chr8:78843321-78843340 None:intergenic 40.0%
CAATTTGATGAAGCCTCATG+TGG - Chr8:78843044-78843063 MsG0880046830.01.T01:CDS 40.0%
CACATGAGGCTTCATCAAAT+TGG + Chr8:78843046-78843065 None:intergenic 40.0%
CATGCTTGTGTTGCAAATTG+GGG - Chr8:78844720-78844739 MsG0880046830.01.T01:intron 40.0%
CCACCTAAGAAGACAAAGAA+TGG + Chr8:78844387-78844406 None:intergenic 40.0%
CCATCAATTACCATTGGCAA+TGG - Chr8:78844326-78844345 MsG0880046830.01.T01:intron 40.0%
CCATTCTTTGTCTTCTTAGG+TGG - Chr8:78844384-78844403 MsG0880046830.01.T01:intron 40.0%
CCATTGCCAATGGTAATTGA+TGG + Chr8:78844329-78844348 None:intergenic 40.0%
CTTGGACTGTGTAAAAGACA+AGG + Chr8:78842664-78842683 None:intergenic 40.0%
CTTTCTTCAGTCTCTTTCGT+TGG - Chr8:78842826-78842845 MsG0880046830.01.T01:CDS 40.0%
GAAATGTTGAGGAACCAGAT+TGG + Chr8:78843193-78843212 None:intergenic 40.0%
GATTCAACTTCCATTGCCAA+TGG + Chr8:78844339-78844358 None:intergenic 40.0%
GGAGCTACCGAATTATATGA+AGG - Chr8:78842752-78842771 MsG0880046830.01.T01:CDS 40.0%
GTAAATCTGAGGGAAGAATG+AGG + Chr8:78844526-78844545 None:intergenic 40.0%
GTACATAGGTCTATCTCTTC+AGG - Chr8:78844078-78844097 MsG0880046830.01.T01:intron 40.0%
GTTTACCGGTAGAAAGTGAT+GGG + Chr8:78844638-78844657 None:intergenic 40.0%
TACTATGGTGAATAGTCCCA+TGG + Chr8:78844604-78844623 None:intergenic 40.0%
TGGCCATTCTTTGTCTTCTT+AGG - Chr8:78844381-78844400 MsG0880046830.01.T01:intron 40.0%
TGGGGAAAGCAATGTTACTA+TGG + Chr8:78844619-78844638 None:intergenic 40.0%
TGTGTTGTCAAGAGGAACAA+AGG - Chr8:78842618-78842637 MsG0880046830.01.T01:intron 40.0%
TGTTTACCGGTAGAAAGTGA+TGG + Chr8:78844639-78844658 None:intergenic 40.0%
TTTACCGGTAGAAAGTGATG+GGG + Chr8:78844637-78844656 None:intergenic 40.0%
TTTCGGTCTCTAATTTCCGT+CGG + Chr8:78844184-78844203 None:intergenic 40.0%
! AGATGGATTCTCTGCATTGT+TGG - Chr8:78845060-78845079 MsG0880046830.01.T01:CDS 40.0%
! CTTGTCTTTTACACAGTCCA+AGG - Chr8:78842662-78842681 MsG0880046830.01.T01:three_prime_UTR 40.0%
! GTGTGGCTAAATGTTGATGA+TGG + Chr8:78842430-78842449 None:intergenic 40.0%
! TAGAATGGCGTGACACTTTT+GGG - Chr8:78844943-78844962 MsG0880046830.01.T01:CDS 40.0%
!! ATTTCTCTGACTTGGTTGTG+TGG + Chr8:78842447-78842466 None:intergenic 40.0%
!! GCTGGATCTCTAAAATACCT+TGG - Chr8:78843563-78843582 MsG0880046830.01.T01:CDS 40.0%
!!! CATTGGTTTTGTCAACAGGA+CGG + Chr8:78843828-78843847 None:intergenic 40.0%
!!! GTACCATTGGTTTTGTCAAC+AGG + Chr8:78843832-78843851 None:intergenic 40.0%
ACAACATAGCTCGAAATGCG+CGG + Chr8:78844662-78844681 None:intergenic 45.0%
AGGCTTCATCAAATTGGCCA+AGG + Chr8:78843040-78843059 None:intergenic 45.0%
AGGTAGATGAGTTGCCAATG+AGG + Chr8:78844567-78844586 None:intergenic 45.0%
ATGTCGCATGATCGGAACAA+AGG - Chr8:78842696-78842715 MsG0880046830.01.T01:CDS 45.0%
CATAGGTCTATCTCTTCAGG+TGG - Chr8:78844081-78844100 MsG0880046830.01.T01:intron 45.0%
CATGGGAGTGACATGAAAAG+AGG + Chr8:78844446-78844465 None:intergenic 45.0%
CCTGCTAAATCAAACCAACC+AGG + Chr8:78844849-78844868 None:intergenic 45.0%
CGTCCTGTTGACAAAACCAA+TGG - Chr8:78843826-78843845 MsG0880046830.01.T01:intron 45.0%
CTTTCCCCATCACTTTCTAC+CGG - Chr8:78844630-78844649 MsG0880046830.01.T01:CDS 45.0%
GGACTTTGTTCTATGTGACG+CGG - Chr8:78844805-78844824 MsG0880046830.01.T01:CDS 45.0%
GTTGCCAATGAGGTTGACAT+AGG + Chr8:78844557-78844576 None:intergenic 45.0%
GTTGTCAAGAGGAACAAAGG+AGG - Chr8:78842621-78842640 MsG0880046830.01.T01:intron 45.0%
TAGTCCCATGGCTGTAATAC+CGG + Chr8:78844592-78844611 None:intergenic 45.0%
TGTAAGAGATCCACCACATG+AGG + Chr8:78843060-78843079 None:intergenic 45.0%
TTTGATGAAGCCTCATGTGG+TGG - Chr8:78843047-78843066 MsG0880046830.01.T01:CDS 45.0%
! CTAGAATGGCGTGACACTTT+TGG - Chr8:78844942-78844961 MsG0880046830.01.T01:CDS 45.0%
!! CCTGGTTGGTTTGATTTAGC+AGG - Chr8:78844846-78844865 MsG0880046830.01.T01:CDS 45.0%
!! TCTGTTTCTTGGGTTGACCT+TGG - Chr8:78843020-78843039 MsG0880046830.01.T01:CDS 45.0%
!! TGACACTTTTGGGTGTGACA+AGG - Chr8:78844953-78844972 MsG0880046830.01.T01:CDS 45.0%
!!! ATCTATTTTTTTTTTTTTTT+TGG - Chr8:78842904-78842923 MsG0880046830.01.T01:CDS 5.0%
AATGACCTGCAGGTAACAGC+TGG + Chr8:78843230-78843249 None:intergenic 50.0%
ACACAACACCAATGACCTGC+AGG + Chr8:78843240-78843259 None:intergenic 50.0%
AGCTGTTACCTGCAGGTCAT+TGG - Chr8:78843229-78843248 MsG0880046830.01.T01:CDS 50.0%
ATATGCCAGCTGTTACCTGC+AGG - Chr8:78843222-78843241 MsG0880046830.01.T01:CDS 50.0%
CTAGCCGGTATTACAGCCAT+GGG - Chr8:78844585-78844604 MsG0880046830.01.T01:CDS 50.0%
GCAACACAAGCATGAACTGC+AGG + Chr8:78844714-78844733 None:intergenic 50.0%
GCTAGTGTAACATTGCGTCG+AGG + Chr8:78844750-78844769 None:intergenic 50.0%
GGGAGTGACATGAAAAGAGG+TGG + Chr8:78844443-78844462 None:intergenic 50.0%
GTTCTATGTGACGCGGATAC+CGG - Chr8:78844812-78844831 MsG0880046830.01.T01:CDS 50.0%
TCGAAATGCGCGGTGTTTAC+CGG + Chr8:78844652-78844671 None:intergenic 50.0%
TGGCAACTCATCTACCTAGC+CGG - Chr8:78844570-78844589 MsG0880046830.01.T01:intron 50.0%
ATACCGGAAAGATGGAGGCC+TGG - Chr8:78844828-78844847 MsG0880046830.01.T01:CDS 55.0%
CAACCAGGCCTCCATCTTTC+CGG + Chr8:78844834-78844853 None:intergenic 55.0%
CCTAGCCGGTATTACAGCCA+TGG - Chr8:78844584-78844603 MsG0880046830.01.T01:intron 55.0%
GGTGGCAAATGCTGCTAGAG+AGG + Chr8:78844425-78844444 None:intergenic 55.0%
TGACGCGGATACCGGAAAGA+TGG - Chr8:78844820-78844839 MsG0880046830.01.T01:CDS 55.0%
! CCATGGCTGTAATACCGGCT+AGG + Chr8:78844587-78844606 None:intergenic 55.0%
CGCGGATACCGGAAAGATGG+AGG - Chr8:78844823-78844842 MsG0880046830.01.T01:CDS 60.0%
CGGAAAGATGGAGGCCTGGT+TGG - Chr8:78844832-78844851 MsG0880046830.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 78842424 78845252 78842424 ID=MsG0880046830.01;Name=MsG0880046830.01
Chr8 mRNA 78842424 78845252 78842424 ID=MsG0880046830.01.T01;Parent=MsG0880046830.01;Name=MsG0880046830.01.T01;_AED=0.26;_eAED=0.26;_QI=173|1|1|1|0.75|0.6|5|250|366
Chr8 exon 78842424 78842630 78842424 ID=MsG0880046830.01.T01:exon:18962;Parent=MsG0880046830.01.T01
Chr8 exon 78842653 78843376 78842653 ID=MsG0880046830.01.T01:exon:18961;Parent=MsG0880046830.01.T01
Chr8 exon 78843539 78843590 78843539 ID=MsG0880046830.01.T01:exon:18960;Parent=MsG0880046830.01.T01
Chr8 exon 78844585 78844674 78844585 ID=MsG0880046830.01.T01:exon:18959;Parent=MsG0880046830.01.T01
Chr8 exon 78844802 78845252 78844802 ID=MsG0880046830.01.T01:exon:18958;Parent=MsG0880046830.01.T01
Chr8 five_prime_UTR 78845080 78845252 78845080 ID=MsG0880046830.01.T01:five_prime_utr;Parent=MsG0880046830.01.T01
Chr8 CDS 78844802 78845079 78844802 ID=MsG0880046830.01.T01:cds;Parent=MsG0880046830.01.T01
Chr8 CDS 78844585 78844674 78844585 ID=MsG0880046830.01.T01:cds;Parent=MsG0880046830.01.T01
Chr8 CDS 78843539 78843590 78843539 ID=MsG0880046830.01.T01:cds;Parent=MsG0880046830.01.T01
Chr8 CDS 78842696 78843376 78842696 ID=MsG0880046830.01.T01:cds;Parent=MsG0880046830.01.T01
Chr8 three_prime_UTR 78842653 78842695 78842653 ID=MsG0880046830.01.T01:three_prime_utr;Parent=MsG0880046830.01.T01
Chr8 three_prime_UTR 78842424 78842630 78842424 ID=MsG0880046830.01.T01:three_prime_utr;Parent=MsG0880046830.01.T01
Gene Sequence

>MsG0880046830.01.T01

ATGAACTATTGTGAGACAAATTGTGTTGTCAAGAGGAACAAAGGAGGTAAAGAAACTGATGAAACCTTGTCTTTTACACAGTCCAAGGATAATATAAAGATGTCGCATGATCGGAACAAAGGAAAACAACAACGTTACGCTCTTGTGTCTTTTATGGAGCTACCGAATTATATGAAGGATAATGAATATATTTTACGTTATTACAGAGCCAATTGGCCTTTGAAAGAAGCTTTCTTCAGTCTCTTTCGTTGGCATAATGAAACTTTGAATGTTTGGACACATTTAGTTGGATTTATTCTGTTTCTTGGGTTGACCTTGGCCAATTTGATGAAGCCTCATGTGGTGGATCTCTTACAACAATTTACAAGGTCTATCTCTTCAGGTGGTGAAAAAAATGTTTCTGATAGCATCAAAGTTCTGGGAACGGCGTTACTCTTTGATTTAAACCATCAATTACCATTGGCAATGGAAGTTGAATCCTTAGAATTTGTTATAGCAAGGTGGCCATTCTTTGTCTTCTTAGGTGGTTCAATGTTCTGTCTCCTCTCTAGCAGCATTTGCCACCTCTTTTCATGTCACTCCCATGACTTAAACCTGTTTCTGTTAAGAATAGATTATGTCGGAATCGCTGTCATGATCATAACCTCATTCTTCCCTCAGATTTACTATGTTTTCCTATGTCAACCTCATTGGCAACTCATCTACCTAGCCGGTATTACAGCCATGGGACTATTCACCATAGTAACATTGCTTTCCCCATCACTTTCTACCGGTAAACACCGCGCATTTCGAGCTATGTTGTTCTGTTCAATGGGACTTTTCGGCATTGTGCCTGCAGTTCATGCTTGTGTTGCAAATTGGGGAAATCCTCGACGCAATGTTACACTAGCATATGAATGTGTCATGGCATTGTCTTACTTGATAGGGACTTTGTTCTATGTGACGCGGATACCGGAAAGATGGAGGCCTGGTTGGTTTGATTTAGCAGGACATAGTCATCAAATATTTCATATTTTGGTTGTGGTTGGTGCATTATCACATTATGCAGCTACACTTAAAATGCTAGAATGGCGTGACACTTTTGGGTGTGACAAGGCTTAA
Protein sequence

>MsG0880046830.01.T01

MNYCETNCVVKRNKGGKETDETLSFTQSKDNIKMSHDRNKGKQQRYALVSFMELPNYMKDNEYILRYYRANWPLKEAFFSLFRWHNETLNVWTHLVGFILFLGLTLANLMKPHVVDLLQQFTRSISSGGEKNVSDSIKVLGTALLFDLNHQLPLAMEVESLEFVIARWPFFVFLGGSMFCLLSSSICHLFSCHSHDLNLFLLRIDYVGIAVMIITSFFPQIYYVFLCQPHWQLIYLAGITAMGLFTIVTLLSPSLSTGKHRAFRAMLFCSMGLFGIVPAVHACVANWGNPRRNVTLAYECVMALSYLIGTLFYVTRIPERWRPGWFDLAGHSHQIFHILVVVGALSHYAATLKMLEWRDTFGCDKA*