AlfalfaGEDB | MsG0380011495.01

M. sativa cultivar ZhongmuNo.1 / MsG0380011495.01

KEGG: -
GO: GO:0016788
PFAM: PF00657

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011495.01.T01	XP_003598046.1	98.108	370	6	1	1	369	1	370	0	746

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011495.01.T01	Q8L5Z1	71.676	346	94	3	28	369	25	370	1.82E-180	508

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011495.01.T01	G7IYG5	98.108	370	6	1	1	369	1	370	0.0	746

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047945.01	MsG0380011495.01	0.815108	1.094302e-51	7.476496e-49
MsG0080047955.01	MsG0380011495.01	0.830496	2.841898e-55	2.999107e-52
MsG0080047956.01	MsG0380011495.01	0.807806	4.222145e-50	2.374293e-47
MsG0080047989.01	MsG0380011495.01	0.815641	8.331034e-52	5.776198e-49
MsG0080048068.01	MsG0380011495.01	0.862365	5.337263e-64	1.559078e-60
MsG0080048528.01	MsG0380011495.01	0.829550	4.834133e-55	4.963566e-52
MsG0080048773.01	MsG0380011495.01	0.804250	2.364335e-49	1.213108e-46
MsG0080048777.01	MsG0380011495.01	0.842264	2.875615e-58	4.336341e-55
MsG0080048780.01	MsG0380011495.01	0.839724	1.335564e-57	1.860529e-54
MsG0080048801.01	MsG0380011495.01	0.898653	4.297624e-77	5.127218e-73

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PPI

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Gene1	Gene2	Type
MsG0780041476.01	MsG0380011495.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011495.01.T01	MTR_3g005660	98.108	370	6	1	1	369	1	370	0.0	746
MsG0380011495.01.T01	MTR_0565s0010	56.471	340	144	3	32	369	28	365	2.12e-131	380
MsG0380011495.01.T01	MTR_8g087890	56.932	339	141	4	33	369	28	363	1.91e-129	375
MsG0380011495.01.T01	MTR_3g024510	54.867	339	148	4	33	369	35	370	1.49e-126	369
MsG0380011495.01.T01	MTR_3g005650	47.727	352	174	7	20	369	14	357	1.57e-110	327
MsG0380011495.01.T01	MTR_3g098270	42.077	366	202	6	8	367	6	367	6.34e-99	298
MsG0380011495.01.T01	MTR_8g087870	45.428	339	170	8	33	369	26	351	2.91e-95	288
MsG0380011495.01.T01	MTR_2g017925	44.970	338	169	6	33	367	30	353	1.93e-90	276
MsG0380011495.01.T01	MTR_2g017955	43.491	338	179	5	33	367	30	358	4.98e-90	276
MsG0380011495.01.T01	MTR_2g017875	43.188	345	180	8	30	369	28	361	2.54e-88	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380011495.01.T01	AT1G33811	71.676	346	94	3	28	369	25	370	0.0	508
MsG0380011495.01.T01	AT4G18970	55.030	338	148	3	34	369	26	361	2.02e-124	363
MsG0380011495.01.T01	AT4G18970	55.193	337	147	3	35	369	27	361	4.54e-123	361
MsG0380011495.01.T01	AT5G45670	54.599	337	149	3	35	369	28	362	6.79e-122	356
MsG0380011495.01.T01	AT1G29670	50.276	362	170	6	12	369	8	363	3.30e-121	355
MsG0380011495.01.T01	AT1G29670	50.276	362	170	6	12	369	76	431	1.69e-120	355
MsG0380011495.01.T01	AT1G29660	51.917	339	158	4	33	369	29	364	5.82e-115	339
MsG0380011495.01.T01	AT1G71691	47.774	337	169	6	34	369	53	383	2.65e-105	315
MsG0380011495.01.T01	AT5G15720	49.412	340	163	8	35	369	29	364	9.06e-102	305
MsG0380011495.01.T01	AT1G71250	46.023	352	181	6	24	369	25	373	3.52e-100	301

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Find 100 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTGGCCAACTCAGT+TGG	0.512592	3:-400382	None:intergenic
AAACCCCTTGCTCTTGAATT+TGG	0.162052	3:-396742	None:intergenic
AAAGTGATCGTTACAGCAGT+TGG	0.549990	3:+397731	MsG0380011495.01.T01:CDS
AAATGTTGGCCAACTCAGTT+GGG	0.523121	3:-400381	None:intergenic
AAATTCAAGAGCAAGGGGTT+TGG	0.392526	3:+396744	MsG0380011495.01.T01:CDS
AAATTTCCTTTGTACACGTA+TGG	0.408909	3:+400592	MsG0380011495.01.T01:three_prime_UTR
AACAAGTATGTGAAGATCGT+GGG	0.555057	3:+400332	MsG0380011495.01.T01:CDS
AAGCGACCGGTGGGACCTTG+TGG	0.527657	3:-396402	None:intergenic
AATAATATATGCATTTGCTT+AGG	0.472093	3:-397054	None:intergenic
AATTAGCCCTAGCAAGTGTT+AGG	0.433591	3:-396356	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGGGGAGAAATGAA+TGG	-	Chr3:398445-398464	None:intergenic	30.0%
AAATTTCCTTTGTACACGTA+TGG	+	Chr3:400592-400611	MsG0380011495.01.T01:three_prime_UTR	30.0%
AATGACATCTAACCTACTTA+TGG	+	Chr3:398772-398791	MsG0380011495.01.T01:intron	30.0%
AATTTCCTTTGTACACGTAT+GGG	+	Chr3:400593-400612	MsG0380011495.01.T01:three_prime_UTR	30.0%
ACGTGTACCGAATAAAAAAA+AGG	+	Chr3:399838-399857	MsG0380011495.01.T01:intron	30.0%
AGCACACATTAATTCAACAT+TGG	+	Chr3:396862-396881	MsG0380011495.01.T01:intron	30.0%
AGCGAAAATAAAAATGGAAG+TGG	-	Chr3:398097-398116	None:intergenic	30.0%
ATGCATATATTATTCAGGGT+TGG	+	Chr3:397063-397082	MsG0380011495.01.T01:CDS	30.0%
CAACAAAGTTGTCAATCAAA+TGG	-	Chr3:398160-398179	None:intergenic	30.0%
CACCAAATTTATGTCCAAAA+AGG	+	Chr3:399789-399808	MsG0380011495.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	396158	400706	396158	ID=MsG0380011495.01;Name=MsG0380011495.01
Chr3	mRNA	396158	400706	396158	ID=MsG0380011495.01.T01;Parent=MsG0380011495.01;Name=MsG0380011495.01.T01;_AED=0.50;_eAED=0.50;_QI=40\|1\|1\|1\|1\|1\|5\|229\|369
Chr3	exon	400260	400706	400260	ID=MsG0380011495.01.T01:exon:157;Parent=MsG0380011495.01.T01
Chr3	exon	397707	397965	397707	ID=MsG0380011495.01.T01:exon:156;Parent=MsG0380011495.01.T01
Chr3	exon	396953	397201	396953	ID=MsG0380011495.01.T01:exon:155;Parent=MsG0380011495.01.T01
Chr3	exon	396710	396834	396710	ID=MsG0380011495.01.T01:exon:154;Parent=MsG0380011495.01.T01
Chr3	exon	396158	396456	396158	ID=MsG0380011495.01.T01:exon:153;Parent=MsG0380011495.01.T01
Chr3	five_prime_UTR	396158	396197	396158	ID=MsG0380011495.01.T01:five_prime_utr;Parent=MsG0380011495.01.T01
Chr3	CDS	396198	396456	396198	ID=MsG0380011495.01.T01:cds;Parent=MsG0380011495.01.T01
Chr3	CDS	396710	396834	396710	ID=MsG0380011495.01.T01:cds;Parent=MsG0380011495.01.T01
Chr3	CDS	396953	397201	396953	ID=MsG0380011495.01.T01:cds;Parent=MsG0380011495.01.T01
Chr3	CDS	397707	397965	397707	ID=MsG0380011495.01.T01:cds;Parent=MsG0380011495.01.T01
Chr3	CDS	400260	400477	400260	ID=MsG0380011495.01.T01:cds;Parent=MsG0380011495.01.T01
Chr3	three_prime_UTR	400478	400706	400478	ID=MsG0380011495.01.T01:three_prime_utr;Parent=MsG0380011495.01.T01

Gene Sequence

>MsG0380011495.01.T01

ATGAAGCATTTTATTTTCACATTCACGTGTATCTGGCTGAGCCTAAGTCCTACAAAATGTTTGTCTCAGGTTTTGCCACGGCAACCAGAGGGACAACAAGTGCCATGTTTCTTCATATTTGGCGACTCATTGGTTGATAATGGAAACAACAATGGGATCCTAACACTTGCTAGGGCTAATTATCGACCTTATGGCATCGACTTCCCACAAGGTCCCACCGGTCGCTTCACCAATGGTCGAACCTTCGTCGATGCATTAGCTCAACTTTTGGGTTTTCGAGCATATATTCCTCCAAATTCAAGAGCAAGGGGTTTGGACCTTCTTAGAGGAGTCAATTATGCATCTGGAGCAGCAGGCATCAGAGAGGAAACAGGCAGTAACCTGGGGGCTCATACATCAATGACTGAGCAAGTGACAAACTTTGGAAACACAGTGCAACAAATGAGAAGGTTCTTTAGAGGAGACAATGATGCACTTAATAGCTACCTAAGCAAATGCATATATTATTCAGGGTTGGGAAGCAATGATTACCTGAACAACTATTTCATGACTGATTTTTATTCAACTAGCACTCAGTACACACCTAAAGCTTTTGCATCTGCCCTTCTTCAAGACTACGCTCGCCAACTATCTCAATTACATTCATTAGGGGCAAGAAAAGTGATCGTTACAGCAGTTGGTCAAATTGGGTGCATACCATATGAATTAGCACGTATTAATGGTAACATCACCGGATGCAATGAGAAGATTAACAATGCCATCCAGTATTTTAACTCAGGTCTTAAGCAATTAGTTCAGAATATCAATGGAGGGCAGCTTCCGGGAGCAAAGTTTGTGTTTTTGGACTTTTATCAAAGCAGTGCAGATCTAGCATTAAATGGAAAATCAATGGGGTTTGATGTGGTAGACAAGGGATGCTGTGGTGTTGGCAGAAACAATGGACAAATCACTTGCCTTCCATTACAACAAGTATGTGAAGATCGTGGGAAATATTTGTTTTGGGATGCTTTCCACCCAACTGAGTTGGCCAACATTTTACTAGCCAAGGCATCATACAGTTCACAATCATACACTTCTCCCATTAATATCCAACAATTGGCAATGCTTTAG

Protein sequence

>MsG0380011495.01.T01

MKHFIFTFTCIWLSLSPTKCLSQVLPRQPEGQQVPCFFIFGDSLVDNGNNNGILTLARANYRPYGIDFPQGPTGRFTNGRTFVDALAQLLGFRAYIPPNSRARGLDLLRGVNYASGAAGIREETGSNLGAHTSMTEQVTNFGNTVQQMRRFFRGDNDALNSYLSKCIYYSGLGSNDYLNNYFMTDFYSTSTQYTPKAFASALLQDYARQLSQLHSLGARKVIVTAVGQIGCIPYELARINGNITGCNEKINNAIQYFNSGLKQLVQNINGGQLPGAKFVFLDFYQSSADLALNGKSMGFDVVDKGCCGVGRNNGQITCLPLQQVCEDRGKYLFWDAFHPTELANILLAKASYSSQSYTSPINIQQLAML*