AlfalfaGEDB | MsG0880047078.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047078.01

KEGG: K14844
GO: GO:0003723 GO:0005488
PFAM: PF08144

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047078.01.T01	XP_013458284.1	74.961	639	42	8	1	521	1	639	0	890

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047078.01.T01	Q9LRZ3	61.569	255	80	2	34	270	42	296	5.33E-97	310

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047078.01.T01	A0A072V2I3	74.961	639	42	8	1	521	1	639	0.0	890

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004946.01	MsG0880047078.01	0.836022	1.193325e-56	1.485040e-53
MsG0280006327.01	MsG0880047078.01	0.807176	5.744375e-50	3.177778e-47
MsG0380016977.01	MsG0880047078.01	0.824579	7.477477e-54	6.650724e-51
MsG0480018401.01	MsG0880047078.01	0.816949	4.247191e-52	3.052168e-49
MsG0480021530.01	MsG0880047078.01	0.883166	5.644101e-71	3.538311e-67
MsG0480023388.01	MsG0880047078.01	0.823014	1.740109e-53	1.480536e-50
MsG0480023962.01	MsG0880047078.01	0.806047	9.941506e-50	5.342564e-47
MsG0680030285.01	MsG0880047078.01	0.806622	7.523445e-50	4.102474e-47
MsG0780038383.01	MsG0880047078.01	0.816665	4.919937e-52	3.507896e-49
MsG0780040823.01	MsG0880047078.01	0.847620	1.030858e-59	1.842920e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047078.01.T01	MTR_4g120470	74.961	639	42	8	1	521	1	639	0.0	890
MsG0880047078.01.T01	MTR_4g120460	56.481	108	20	2	396	503	90	170	1.35e-24	100
MsG0880047078.01.T01	MTR_4g120460	84.091	44	7	0	111	154	16	59	1.13e-19	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047078.01.T01	AT3G16810	61.569	255	80	2	34	270	42	296	5.44e-98	310
MsG0880047078.01.T01	AT3G16810	44.863	292	113	5	261	511	349	633	1.66e-72	243

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Find 129 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAAATGTGAATTAT+GGG	0.335970	8:-81626375	MsG0880047078.01.T01:CDS
AAAATGATATAGGGGTGCAT+TGG	0.580583	8:+81626042	None:intergenic
AAATGTGAATTATGGGCCCA+TGG	0.606288	8:-81626368	MsG0880047078.01.T01:CDS
AAGTCCCAACGAAGGAAACC+AGG	0.600794	8:-81630077	MsG0880047078.01.T01:intron
AATTATGGGCCCATGGTCAC+AGG	0.521124	8:-81626361	MsG0880047078.01.T01:intron
AATTCTGAAGGAGCTTGTTT+TGG	0.303882	8:-81627638	MsG0880047078.01.T01:CDS
AATTGGCGACGATGATTCCA+TGG	0.539580	8:-81627113	MsG0880047078.01.T01:CDS
AATTTGGTAGTGGATTTCTT+CGG	0.499576	8:+81632498	None:intergenic
ACAAAAGCAAGAGCTACTTT+TGG	0.443561	8:-81630136	MsG0880047078.01.T01:CDS
ACAAGATGGAAGCAAAGTCG+GGG	0.683734	8:+81626411	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCTTGACAATGGTAA+TGG	-	Chr8:81627291-81627310	MsG0880047078.01.T01:intron	30.0%
AAACACAAGTAATACATGGA+AGG	+	Chr8:81631447-81631466	None:intergenic	30.0%
AAATACAATACTCCAGAAAG+AGG	+	Chr8:81628894-81628913	None:intergenic	30.0%
AATAAGCTGTTTATCAGAAC+AGG	+	Chr8:81626307-81626326	None:intergenic	30.0%
AATAGTTGCTAAACAAACCT+TGG	+	Chr8:81629307-81629326	None:intergenic	30.0%
ACACTGAAAGACTTGATAAA+TGG	-	Chr8:81629617-81629636	MsG0880047078.01.T01:intron	30.0%
ACTACTAAGATACAATAGCA+GGG	+	Chr8:81632552-81632571	None:intergenic	30.0%
AGCTTATACAAAAACAGTCT+AGG	+	Chr8:81626536-81626555	None:intergenic	30.0%
ATAAGTTGTGTGAAACTGTT+TGG	+	Chr8:81626476-81626495	None:intergenic	30.0%
ATACTTTAGCATTGCTGATA+AGG	-	Chr8:81629069-81629088	MsG0880047078.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	81625684	81632700	81625684	ID=MsG0880047078.01;Name=MsG0880047078.01
Chr8	mRNA	81625684	81632700	81625684	ID=MsG0880047078.01.T01;Parent=MsG0880047078.01;Name=MsG0880047078.01.T01;_AED=0.42;_eAED=0.42;_QI=105\|0.75\|1\|1\|1\|1\|13\|450\|521
Chr8	exon	81625684	81626266	81625684	ID=MsG0880047078.01.T01:exon:34983;Parent=MsG0880047078.01.T01
Chr8	exon	81626362	81626609	81626362	ID=MsG0880047078.01.T01:exon:34982;Parent=MsG0880047078.01.T01
Chr8	exon	81626698	81626772	81626698	ID=MsG0880047078.01.T01:exon:34981;Parent=MsG0880047078.01.T01
Chr8	exon	81626979	81627179	81626979	ID=MsG0880047078.01.T01:exon:34980;Parent=MsG0880047078.01.T01
Chr8	exon	81627633	81627683	81627633	ID=MsG0880047078.01.T01:exon:34979;Parent=MsG0880047078.01.T01
Chr8	exon	81627775	81627825	81627775	ID=MsG0880047078.01.T01:exon:34978;Parent=MsG0880047078.01.T01
Chr8	exon	81629294	81629444	81629294	ID=MsG0880047078.01.T01:exon:34977;Parent=MsG0880047078.01.T01
Chr8	exon	81630078	81630192	81630078	ID=MsG0880047078.01.T01:exon:34976;Parent=MsG0880047078.01.T01
Chr8	exon	81630894	81630977	81630894	ID=MsG0880047078.01.T01:exon:34975;Parent=MsG0880047078.01.T01
Chr8	exon	81631078	81631201	81631078	ID=MsG0880047078.01.T01:exon:34974;Parent=MsG0880047078.01.T01
Chr8	exon	81631296	81631377	81631296	ID=MsG0880047078.01.T01:exon:34973;Parent=MsG0880047078.01.T01
Chr8	exon	81631477	81631538	81631477	ID=MsG0880047078.01.T01:exon:34972;Parent=MsG0880047078.01.T01
Chr8	exon	81632407	81632700	81632407	ID=MsG0880047078.01.T01:exon:34971;Parent=MsG0880047078.01.T01
Chr8	five_prime_UTR	81632596	81632700	81632596	ID=MsG0880047078.01.T01:five_prime_utr;Parent=MsG0880047078.01.T01
Chr8	CDS	81632407	81632595	81632407	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81631477	81631538	81631477	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81631296	81631377	81631296	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81631078	81631201	81631078	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81630894	81630977	81630894	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81630078	81630192	81630078	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81629294	81629444	81629294	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81627775	81627825	81627775	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81627633	81627683	81627633	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81626979	81627179	81626979	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81626698	81626772	81626698	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81626362	81626609	81626362	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	CDS	81626134	81626266	81626134	ID=MsG0880047078.01.T01:cds;Parent=MsG0880047078.01.T01
Chr8	three_prime_UTR	81625684	81626133	81625684	ID=MsG0880047078.01.T01:three_prime_utr;Parent=MsG0880047078.01.T01

Gene Sequence

>MsG0880047078.01.T01

ATGGCGGCGAAGAAGCAACAAGAGGTAGACATCAAAAAGAGAAAGCGAATCGACACTAAAACTCCTTCTTCTAATCCGAAGAAATCCACTACCAAATTCGTTCCTTCAAAGAAGCCAAAACCTCACTCCGATGATAAAGACAAGAACAAAACTCCCCTTAACGCCCGTGAACGTCGTCACCATGCTAAGGAGCTTGCACGTCTATGGGAAAAGATGAGACGTCATGAGATTGCTAAAGAAGACAGATCCAAGCTGGTGACAGAAGCTCTAACAAAAATGAAGGGGAAGATTCATGAGATTGCAGGGTCTCACATTACTTCTCGTGTTCTTCAGACTTGTGTCAAACATTGTTCACAAGCTGAAAGAGATCAAGTATTTGAAGAGCTTCGTCCGCATTTTCTAAATCTAGCCTACAGTGCATATGCTGTTCACTTAGTAAAGAAAATGCTTGACAATGCCTCGAAGAAACAACTGGCAGGCTTTATCTCTACTCTTCGTGGCCATGTTGCTCCTCTTCTTCGCCACATGGTTGGATCAGTTGTTGTTGAGCATGCATATGACTTAGCCAGTGCTGCACAAAAGCAAGAGCTACTTTTGGAATTATATTCCACAGAGCTTCAGTTGTTTAAGGACCAAGTCCCAACGAAGGAAACCAGATTACTAGATGTAATGTCCAAGTTGGGTCTACAAAAAGGCTCAGTTTCACGTCATATGTCGAAAGTGATTCAGCCAATTTTAGAGAAAGGGATAGTTGACCACTCTATCCTACACAGAGTCTTGTTGGAATACTTTAGCATTGCTGATAAGGTGCTGGTTTCCATCCTTTCAGTTGTCGACGATACAAAACTGATAACAAAGGTTATCATTCGCGAGCTTCAATCAATTCTGAAGGAGCTTGTTTTGGACAAGGATCAGTCAGAAGCAAGCTCTCAGACAGAAACTTCCAAGGTTTCAATTGGCGACGATGATTCCATGGAAGACAGCGAAGTGAAAGTGCCCGAAGTTAATGAAGATAAAACTTCTGTGGATGATACTGACCTAGTTGAGAGTGGAAAGAAAGACCCATTGGTCAGAAGGCAGGAGCTATTGATCAACAGTGGACTTGCAGAGAGTCTTCTTGATATATGCATTGAGAATGTAGGAGAACTGATACGGTCAAATTTTGGCAAAGAGGTCATATACGAGGTTGCGACAGGGGGATTTGAGGGCATATTGCATCCAACTTTGGATGATAAGATTAATTCTCTCCACAAAGCGATAGCATCTCTTGCAGCAGTGCCTAAGTCAGAAGATTCACAAGAGGAGCACGTCCTTGAAAATTTCTTTTCAAATCGGACCATTAGAAAACTAATCTTGGACTGCCCCGACTTTGCTTCCATCTTGTGGAAGGAAGCTTTAAAAGGGAAATGTGAATTATGGGCCCATGGTCACAGCTGTAAGGTTATCACTGCATTTTTGGAATCAACAGATTCAAAGGTACAGAAGCTTGCAAAAAAAGAGTTGCAGCCTTTAATTGATAATGGAGTTCTCAAGAACCCACAGCCCAAAGAACAAGCAAGCCAATGA

Protein sequence

>MsG0880047078.01.T01

MAAKKQQEVDIKKRKRIDTKTPSSNPKKSTTKFVPSKKPKPHSDDKDKNKTPLNARERRHHAKELARLWEKMRRHEIAKEDRSKLVTEALTKMKGKIHEIAGSHITSRVLQTCVKHCSQAERDQVFEELRPHFLNLAYSAYAVHLVKKMLDNASKKQLAGFISTLRGHVAPLLRHMVGSVVVEHAYDLASAAQKQELLLELYSTELQLFKDQVPTKETRLLDVMSKLGLQKGSVSRHMSKVIQPILEKGIVDHSILHRVLLEYFSIADKVLVSILSVVDDTKLITKVIIRELQSILKELVLDKDQSEASSQTETSKVSIGDDDSMEDSEVKVPEVNEDKTSVDDTDLVESGKKDPLVRRQELLINSGLAESLLDICIENVGELIRSNFGKEVIYEVATGGFEGILHPTLDDKINSLHKAIASLAAVPKSEDSQEEHVLENFFSNRTIRKLILDCPDFASILWKEALKGKCELWAHGHSCKVITAFLESTDSKVQKLAKKELQPLIDNGVLKNPQPKEQASQ*