AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017727.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017727.01.T01 MTR_3g111190 89.781 411 30 3 40 445 32 435 0.0 726
MsG0380017727.01.T01 MTR_3g111190 94.493 345 8 2 106 445 1 339 0.0 651
MsG0380017727.01.T01 MTR_5g067410 74.696 411 97 5 40 445 38 446 0.0 600
MsG0380017727.01.T01 MTR_4g092820 61.839 435 153 5 13 445 10 433 1.09e-170 490
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017727.01.T01 AT1G58290 72.506 411 98 4 43 445 46 449 0.0 576
MsG0380017727.01.T01 AT1G09940 71.186 413 94 8 43 445 41 438 0.0 561
MsG0380017727.01.T01 AT2G31250 66.954 348 99 6 104 445 95 432 5.17e-157 455

Find 104 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCACCCATTTATCAGTTT+TGG 0.185877 3:+100056897 MsG0380017727.01.T01:CDS
ACGTCATCTTTCATGAATAA+TGG 0.203444 3:-100058567 None:intergenic
ATGCAATAACCGTCGGAAAA+AGG 0.214853 3:+100058220 MsG0380017727.01.T01:CDS
GGTTTCCCAAAACTGATAAA+TGG 0.223166 3:-100056903 None:intergenic
TGGCAGCCACAACCTCTTTA+AGG 0.223188 3:-100058716 None:intergenic
TTCAATCTAGGGTTAGGGTT+AGG 0.235094 3:+100056786 None:intergenic
CACTTTCTCCGGTCCCAAAT+TGG 0.259254 3:+100056837 MsG0380017727.01.T01:CDS
CGTCATCTTTCATGAATAAT+GGG 0.303979 3:-100058566 None:intergenic
GAGGAATAGAGACTCCAATT+TGG 0.312345 3:-100056851 None:intergenic
TCAATCTAGGGTTAGGGTTA+GGG 0.313893 3:+100056787 None:intergenic
CTCTTTGACACCACGGTGTT+GGG 0.321524 3:-100057895 None:intergenic
AGAACCACTTTCACTCAAAA+AGG 0.332496 3:+100056927 MsG0380017727.01.T01:CDS
CCTCCAACATCTTGACTTGC+TGG 0.341053 3:-100058603 None:intergenic
GGTCTTGAGTCTCTTGTATT+GGG 0.347849 3:+100058105 MsG0380017727.01.T01:CDS
ATATATCTCCATTCGGTTGC+AGG 0.348244 3:-100057859 None:intergenic
TGGTCTTGAGTCTCTTGTAT+TGG 0.351928 3:+100058104 MsG0380017727.01.T01:CDS
GCATTATCATGCGAGGCTTC+AGG 0.359923 3:-100058321 None:intergenic
AAAGCTGGTCATCAAACATT+TGG 0.383472 3:+100058377 MsG0380017727.01.T01:CDS
GCTCTAGGCCATTCTGCTTC+CGG 0.389081 3:-100057783 None:intergenic
AGGAGCAGCATTGTCGTCAT+TGG 0.397753 3:+100057712 MsG0380017727.01.T01:CDS
AGTTGAAACAATTTGAAGCT+TGG 0.400753 3:+100058793 MsG0380017727.01.T01:CDS
CAAGAGAGCATTTCTGAAAG+AGG 0.405927 3:-100058498 None:intergenic
GGACAAGGAGTTAACGGCTT+TGG 0.406926 3:+100058171 MsG0380017727.01.T01:CDS
TGCTCGCAAAGCTCTGAAAC+AGG 0.418070 3:-100058028 None:intergenic
GCCGTTTCAACCACTTTCTC+CGG 0.422111 3:+100056826 MsG0380017727.01.T01:CDS
AGGAATAGAGACTCCAATTT+GGG 0.423815 3:-100056850 None:intergenic
CAGAATTCTGATCAAACTAA+TGG 0.426228 3:+100056969 MsG0380017727.01.T01:CDS
AACTGATAAATGGGTGGGAA+TGG 0.427322 3:-100056893 None:intergenic
TCTAAGCCGATCCTCTTTGT+TGG 0.438084 3:-100058736 None:intergenic
GAACAGAAATGTCGATGAAA+AGG 0.454173 3:-100058632 None:intergenic
GCAGAGACTAATATTGCTGC+TGG 0.454882 3:+100058249 MsG0380017727.01.T01:CDS
ATGGAAGCGCAGGCGATCAT+TGG 0.455997 3:+100058765 MsG0380017727.01.T01:CDS
GTTAAGCAAGTTGTCAAAGT+TGG 0.466075 3:+100058150 MsG0380017727.01.T01:CDS
GTTTCCCAAAACTGATAAAT+GGG 0.467054 3:-100056902 None:intergenic
AAAGTTGGACAAGGAGTTAA+CGG 0.467613 3:+100058165 MsG0380017727.01.T01:CDS
TATTCCTCAGATCTTCTTCG+AGG 0.479568 3:+100056866 MsG0380017727.01.T01:CDS
TGAAGCTTGGAGAGACTCGC+TGG 0.485909 3:+100058806 MsG0380017727.01.T01:CDS
GAGTTCAGCTGCCGTGGAGT+TGG 0.487465 3:+100058284 MsG0380017727.01.T01:CDS
ATCAAACATTTGGTTTCGAA+AGG 0.487528 3:+100058387 MsG0380017727.01.T01:CDS
GGAGCAGCATTGTCGTCATT+GGG 0.488441 3:+100057713 MsG0380017727.01.T01:CDS
TTCTGTGAGTTCAGCTGCCG+TGG 0.490671 3:+100058278 MsG0380017727.01.T01:CDS
GGCTCAGTGTGCACACTGCT+CGG 0.491264 3:+100057734 MsG0380017727.01.T01:CDS
CAATGTTGATGACCTTAAAG+AGG 0.492073 3:+100058704 MsG0380017727.01.T01:CDS
AGGATGCTGATTATCGGTGC+TGG 0.497285 3:+100058345 MsG0380017727.01.T01:CDS
TGCTGGGAAGATGGGAAAGC+TGG 0.498604 3:+100058362 MsG0380017727.01.T01:CDS
GATTATCGGTGCTGGGAAGA+TGG 0.501802 3:+100058353 MsG0380017727.01.T01:CDS
CCTCTTTGACACCACGGTGT+TGG 0.505749 3:-100057896 None:intergenic
ATTTCTGTTCCTCGAAATGT+TGG 0.512769 3:+100058645 MsG0380017727.01.T01:CDS
GAGGAGCTCAAGAGCAGAGA+GGG 0.516677 3:-100057003 None:intergenic
ATTATCGGTGCTGGGAAGAT+GGG 0.517250 3:+100058354 MsG0380017727.01.T01:CDS
GAGTCTCTTGTATTGGGAGA+AGG 0.518033 3:+100058111 MsG0380017727.01.T01:CDS
TTCGAAAGGTTGCACAAGGA+TGG 0.522727 3:+100058401 MsG0380017727.01.T01:CDS
CAGAGACTAATATTGCTGCT+GGG 0.527457 3:+100058250 MsG0380017727.01.T01:CDS
AATGCCAGGATGCTGATTAT+CGG 0.528010 3:+100058339 MsG0380017727.01.T01:CDS
ACACATGAACCAACATTTCG+AGG 0.528910 3:-100058654 None:intergenic
AGAAGGTCAAATTCTTGCAC+AGG 0.531198 3:+100058128 MsG0380017727.01.T01:CDS
ACCGGAGAAAGTGGTTGAAA+CGG 0.531801 3:-100056827 None:intergenic
TAGAAAAGCAATGGAAGCGC+AGG 0.539856 3:+100058755 MsG0380017727.01.T01:CDS
CAATTTGGGACCGGAGAAAG+TGG 0.542238 3:-100056836 None:intergenic
CCGTGGTGTCAAAGAGGTCA+TGG 0.542278 3:+100057902 MsG0380017727.01.T01:CDS
TTGTGTTTCTGAAGCAGATG+TGG 0.542350 3:+100058518 MsG0380017727.01.T01:CDS
AAGCCTCGCATGATAATGCC+AGG 0.544469 3:+100058325 MsG0380017727.01.T01:CDS
GGCTTCAGGTAGCTTCATAT+AGG 0.552546 3:-100058307 None:intergenic
CATCTTGACTTGCTGGAGGA+AGG 0.557482 3:-100058596 None:intergenic
CCCAAAACTGATAAATGGGT+GGG 0.559833 3:-100056898 None:intergenic
TAGAGACTCCAATTTGGGAC+CGG 0.563889 3:-100056845 None:intergenic
AGCACCGATAATCAGCATCC+TGG 0.566229 3:-100058343 None:intergenic
GGATGCTGATTATCGGTGCT+GGG 0.570581 3:+100058346 MsG0380017727.01.T01:CDS
TGATGACCTTAAAGAGGTTG+TGG 0.573814 3:+100058710 MsG0380017727.01.T01:CDS
AGGCCATTCTGCTTCCGGAA+TGG 0.575247 3:-100057778 None:intergenic
CGACGACATATATCTCCATT+CGG 0.575634 3:-100057866 None:intergenic
CTCAAGAGCAGAGAGGGTGG+TGG 0.576095 3:-100056997 None:intergenic
TTGCCATTCCGGAAGCAGAA+TGG 0.576827 3:+100057775 MsG0380017727.01.T01:CDS
CCAGCAAGTCAAGATGTTGG+AGG 0.577979 3:+100058603 MsG0380017727.01.T01:CDS
CACAACTCTGCAATAGCTCT+AGG 0.584214 3:-100057798 None:intergenic
GGATCGGCTTAGAAAAGCAA+TGG 0.585302 3:+100058746 MsG0380017727.01.T01:CDS
TCCCAAAACTGATAAATGGG+TGG 0.585404 3:-100056899 None:intergenic
TGCAATACGCGAAGAACTGA+AGG 0.590760 3:+100058455 MsG0380017727.01.T01:CDS
TCTGAGCACCTGCAACCGAA+TGG 0.593474 3:+100057851 MsG0380017727.01.T01:CDS
AACCCTGATCCTTTCAGCAT+AGG 0.597458 3:-100058857 None:intergenic
AGAGACTAATATTGCTGCTG+GGG 0.599145 3:+100058251 MsG0380017727.01.T01:CDS
TATTGCAGCAACTCTCTCCT+CGG 0.599628 3:-100058439 None:intergenic
CAAGTTGTCAAAGTTGGACA+AGG 0.600402 3:+100058156 MsG0380017727.01.T01:CDS
TTCAAGCATGCAATAACCGT+CGG 0.602266 3:+100058213 MsG0380017727.01.T01:CDS
GAGCTCAAGAGCAGAGAGGG+TGG 0.603642 3:-100057000 None:intergenic
CCTCCAGCAAGTCAAGATGT+TGG 0.604438 3:+100058600 MsG0380017727.01.T01:CDS
TGGTTTCGAAAGGTTGCACA+AGG 0.613006 3:+100058397 MsG0380017727.01.T01:CDS
AAATGTCGATGAAAAGGCGA+AGG 0.620011 3:-100058626 None:intergenic
TGGCTGCCAACAAAGAGGAT+CGG 0.623928 3:+100058730 MsG0380017727.01.T01:CDS
CCAACACCGTGGTGTCAAAG+AGG 0.625380 3:+100057896 MsG0380017727.01.T01:CDS
TAACAGGGTACACAAAGGAA+AGG 0.638046 3:+100057692 MsG0380017727.01.T01:intron
GTGTCAAAGAGGTCATGGAA+TGG 0.647540 3:+100057907 MsG0380017727.01.T01:CDS
CATCCTGGCATTATCATGCG+AGG 0.650328 3:-100058328 None:intergenic
CCATGACCTCTTTGACACCA+CGG 0.651376 3:-100057902 None:intergenic
GGTTGTGGCTGCCAACAAAG+AGG 0.659117 3:+100058725 MsG0380017727.01.T01:CDS
CCAACATCTTGACTTGCTGG+AGG 0.669581 3:-100058600 None:intergenic
AACTTTAACAGGGTACACAA+AGG 0.670584 3:+100057687 MsG0380017727.01.T01:intron
TTAGGGTTCTCACTCAACAA+TGG 0.677893 3:+100056804 MsG0380017727.01.T01:CDS
TGAGGAGCTCAAGAGCAGAG+AGG 0.684333 3:-100057004 None:intergenic
CTTCATATAGGCCAACTCCA+CGG 0.687445 3:-100058295 None:intergenic
ATAGCCTCGAAGAAGATCTG+AGG 0.688112 3:-100056870 None:intergenic
GGCTTTGGAAGAAACATCAG+TGG 0.695694 3:+100058186 MsG0380017727.01.T01:CDS
GGTTGTTGTCAATAGAACCG+AGG 0.729846 3:+100058422 MsG0380017727.01.T01:CDS
GTCGCTCTATCCCAACACCG+TGG 0.769259 3:+100057885 MsG0380017727.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATGTTTAATCAAACAA+AGG - Chr3:100057103-100057122 None:intergenic 15.0%
!! TTATACAATTAACTTTAACA+GGG + Chr3:100057677-100057696 MsG0380017727.01.T01:intron 15.0%
!! TTTATACAATTAACTTTAAC+AGG + Chr3:100057676-100057695 MsG0380017727.01.T01:intron 15.0%
!! AGAAATATAACAAACAGAAA+AGG - Chr3:100057451-100057470 None:intergenic 20.0%
!! TTTAATGTATATGTTCTCTT+TGG + Chr3:100057990-100058009 MsG0380017727.01.T01:intron 20.0%
!! TTTCATAGTATTCACTATAA+AGG + Chr3:100057349-100057368 MsG0380017727.01.T01:intron 20.0%
!!! TCTTTGTTGTAAAGTAAAAA+CGG - Chr3:100058054-100058073 None:intergenic 20.0%
!!! TGTTTGTTATATTTCTTAAG+TGG + Chr3:100057455-100057474 MsG0380017727.01.T01:intron 20.0%
! CTTGAATACAATTAATCATC+TGG - Chr3:100057277-100057296 None:intergenic 25.0%
! GTTATATTTCTTAAGTGGTT+CGG + Chr3:100057460-100057479 MsG0380017727.01.T01:intron 25.0%
! TCTCTAAACATATGGATTTA+AGG + Chr3:100057149-100057168 MsG0380017727.01.T01:intron 25.0%
! TGAAAAAAAAACATGTTTCC+TGG - Chr3:100057334-100057353 None:intergenic 25.0%
!! CTCTGAAAGTATATAATCTT+TGG + Chr3:100057234-100057253 MsG0380017727.01.T01:intron 25.0%
!! GAGTTTGTTTAATTCACTTA+AGG + Chr3:100057421-100057440 MsG0380017727.01.T01:intron 25.0%
!!! AGGCTCAATTTTTTTATAGT+AGG - Chr3:100058840-100058859 None:intergenic 25.0%
AAACATGTTTCCTGGTAAAT+AGG - Chr3:100057326-100057345 None:intergenic 30.0%
AACATGTTTCCTGGTAAATA+GGG - Chr3:100057325-100057344 None:intergenic 30.0%
ACGTCATCTTTCATGAATAA+TGG - Chr3:100058570-100058589 None:intergenic 30.0%
ATGAAAGACGAATTCAATTC+AGG - Chr3:100057068-100057087 None:intergenic 30.0%
ATGCACGACAAATATGATTT+AGG - Chr3:100057961-100057980 None:intergenic 30.0%
CAGAATTCTGATCAAACTAA+TGG + Chr3:100056969-100056988 MsG0380017727.01.T01:CDS 30.0%
CGTCATCTTTCATGAATAAT+GGG - Chr3:100058569-100058588 None:intergenic 30.0%
CTGTTGTATCTCTAAACATA+TGG + Chr3:100057141-100057160 MsG0380017727.01.T01:intron 30.0%
GTTTCCCAAAACTGATAAAT+GGG - Chr3:100056905-100056924 None:intergenic 30.0%
TACTTGAAAAAGATGTTGTG+TGG - Chr3:100058079-100058098 None:intergenic 30.0%
TCTACCAAAACAAAGAAAGA+CGG + Chr3:100057590-100057609 MsG0380017727.01.T01:intron 30.0%
TGAAAGACGAATTCAATTCA+GGG - Chr3:100057067-100057086 None:intergenic 30.0%
! AGTTGAAACAATTTGAAGCT+TGG + Chr3:100058793-100058812 MsG0380017727.01.T01:CDS 30.0%
! ATCAAACATTTGGTTTCGAA+AGG + Chr3:100058387-100058406 MsG0380017727.01.T01:CDS 30.0%
!! TTCCAAGATTTGAAGCTTTT+GGG + Chr3:100057522-100057541 MsG0380017727.01.T01:intron 30.0%
!!! AATTCCTTTTTGAGTGAAAG+TGG - Chr3:100056934-100056953 None:intergenic 30.0%
AAAGCTGGTCATCAAACATT+TGG + Chr3:100058377-100058396 MsG0380017727.01.T01:CDS 35.0%
AAAGTTGGACAAGGAGTTAA+CGG + Chr3:100058165-100058184 MsG0380017727.01.T01:CDS 35.0%
AACTTTAACAGGGTACACAA+AGG + Chr3:100057687-100057706 MsG0380017727.01.T01:intron 35.0%
ACAACAGATTAAGACAGAGA+GGG - Chr3:100057128-100057147 None:intergenic 35.0%
AGAACCACTTTCACTCAAAA+AGG + Chr3:100056927-100056946 MsG0380017727.01.T01:CDS 35.0%
AGGAATAGAGACTCCAATTT+GGG - Chr3:100056853-100056872 None:intergenic 35.0%
ATTTCTGTTCCTCGAAATGT+TGG + Chr3:100058645-100058664 MsG0380017727.01.T01:CDS 35.0%
CTACCAAAACAAAGAAAGAC+GGG + Chr3:100057591-100057610 MsG0380017727.01.T01:intron 35.0%
GAACAGAAATGTCGATGAAA+AGG - Chr3:100058635-100058654 None:intergenic 35.0%
GGTTTCCCAAAACTGATAAA+TGG - Chr3:100056906-100056925 None:intergenic 35.0%
GTTAAGCAAGTTGTCAAAGT+TGG + Chr3:100058150-100058169 MsG0380017727.01.T01:CDS 35.0%
TACAACAGATTAAGACAGAG+AGG - Chr3:100057129-100057148 None:intergenic 35.0%
! CGGGATTTCATGTTTTTCAT+TGG + Chr3:100057610-100057629 MsG0380017727.01.T01:intron 35.0%
!! AATCCCGTCTTTCTTTGTTT+TGG - Chr3:100057597-100057616 None:intergenic 35.0%
!! CAATGTTGATGACCTTAAAG+AGG + Chr3:100058704-100058723 MsG0380017727.01.T01:CDS 35.0%
!! GTTCCAAGATTTGAAGCTTT+TGG + Chr3:100057521-100057540 MsG0380017727.01.T01:intron 35.0%
!! TTTTGAGTGAAAGTGGTTCT+GGG - Chr3:100056927-100056946 None:intergenic 35.0%
!!! CATCTTTTTCAAGTATCAGC+TGG + Chr3:100058084-100058103 MsG0380017727.01.T01:CDS 35.0%
!!! TTTTTGAGTGAAAGTGGTTC+TGG - Chr3:100056928-100056947 None:intergenic 35.0%
AAATGTCGATGAAAAGGCGA+AGG - Chr3:100058629-100058648 None:intergenic 40.0%
AACTGATAAATGGGTGGGAA+TGG - Chr3:100056896-100056915 None:intergenic 40.0%
ACACATGAACCAACATTTCG+AGG - Chr3:100058657-100058676 None:intergenic 40.0%
AGAAGGTCAAATTCTTGCAC+AGG + Chr3:100058128-100058147 MsG0380017727.01.T01:CDS 40.0%
AGAGACTAATATTGCTGCTG+GGG + Chr3:100058251-100058270 MsG0380017727.01.T01:CDS 40.0%
ATATATCTCCATTCGGTTGC+AGG - Chr3:100057862-100057881 None:intergenic 40.0%
ATGCAATAACCGTCGGAAAA+AGG + Chr3:100058220-100058239 MsG0380017727.01.T01:CDS 40.0%
CAAGTTGTCAAAGTTGGACA+AGG + Chr3:100058156-100058175 MsG0380017727.01.T01:CDS 40.0%
CAGAGACTAATATTGCTGCT+GGG + Chr3:100058250-100058269 MsG0380017727.01.T01:CDS 40.0%
CCCAAAACTGATAAATGGGT+GGG - Chr3:100056901-100056920 None:intergenic 40.0%
CGACGACATATATCTCCATT+CGG - Chr3:100057869-100057888 None:intergenic 40.0%
GAGGAATAGAGACTCCAATT+TGG - Chr3:100056854-100056873 None:intergenic 40.0%
GGTCTTGAGTCTCTTGTATT+GGG + Chr3:100058105-100058124 MsG0380017727.01.T01:CDS 40.0%
GTCCCAAAAGCTTCAAATCT+TGG - Chr3:100057527-100057546 None:intergenic 40.0%
TAACAGGGTACACAAAGGAA+AGG + Chr3:100057692-100057711 MsG0380017727.01.T01:intron 40.0%
TATTCCTCAGATCTTCTTCG+AGG + Chr3:100056866-100056885 MsG0380017727.01.T01:CDS 40.0%
TCCCAAAACTGATAAATGGG+TGG - Chr3:100056902-100056921 None:intergenic 40.0%
TGATGACCTTAAAGAGGTTG+TGG + Chr3:100058710-100058729 MsG0380017727.01.T01:CDS 40.0%
TGCAATAACCGTCGGAAAAA+GGG + Chr3:100058221-100058240 MsG0380017727.01.T01:CDS 40.0%
TTAGGGTTCTCACTCAACAA+TGG + Chr3:100056804-100056823 MsG0380017727.01.T01:CDS 40.0%
TTCAAGCATGCAATAACCGT+CGG + Chr3:100058213-100058232 MsG0380017727.01.T01:CDS 40.0%
! AATGCCAGGATGCTGATTAT+CGG + Chr3:100058339-100058358 MsG0380017727.01.T01:CDS 40.0%
! CCCACCCATTTATCAGTTTT+GGG + Chr3:100056898-100056917 MsG0380017727.01.T01:CDS 40.0%
! TATCAGCTGCAGAAGTTTTG+AGG - Chr3:100057025-100057044 None:intergenic 40.0%
! TCCCACCCATTTATCAGTTT+TGG + Chr3:100056897-100056916 MsG0380017727.01.T01:CDS 40.0%
! TGGTCTTGAGTCTCTTGTAT+TGG + Chr3:100058104-100058123 MsG0380017727.01.T01:CDS 40.0%
!! CAAGAGAGCATTTCTGAAAG+AGG - Chr3:100058501-100058520 None:intergenic 40.0%
!! GTTTTGGTAGATAACCCTCT+AGG - Chr3:100057581-100057600 None:intergenic 40.0%
!! TTGTGTTTCTGAAGCAGATG+TGG + Chr3:100058518-100058537 MsG0380017727.01.T01:CDS 40.0%
ACCGGAGAAAGTGGTTGAAA+CGG - Chr3:100056830-100056849 None:intergenic 45.0%
ATAGCCTCGAAGAAGATCTG+AGG - Chr3:100056873-100056892 None:intergenic 45.0%
ATTGCAGCACCCTATTTACC+AGG + Chr3:100057313-100057332 MsG0380017727.01.T01:intron 45.0%
CACAACTCTGCAATAGCTCT+AGG - Chr3:100057801-100057820 None:intergenic 45.0%
CAGAGATAAAGTGCAGTAGC+AGG - Chr3:100057219-100057238 None:intergenic 45.0%
CTTCATATAGGCCAACTCCA+CGG - Chr3:100058298-100058317 None:intergenic 45.0%
GAGTCTCTTGTATTGGGAGA+AGG + Chr3:100058111-100058130 MsG0380017727.01.T01:CDS 45.0%
GCAGAGACTAATATTGCTGC+TGG + Chr3:100058249-100058268 MsG0380017727.01.T01:CDS 45.0%
GCGTGAAAAACTTGCCATTC+CGG + Chr3:100057764-100057783 MsG0380017727.01.T01:CDS 45.0%
GGCTTCAGGTAGCTTCATAT+AGG - Chr3:100058310-100058329 None:intergenic 45.0%
GGTTGTTGTCAATAGAACCG+AGG + Chr3:100058422-100058441 MsG0380017727.01.T01:CDS 45.0%
GTGTCAAAGAGGTCATGGAA+TGG + Chr3:100057907-100057926 MsG0380017727.01.T01:CDS 45.0%
TATTGCAGCAACTCTCTCCT+CGG - Chr3:100058442-100058461 None:intergenic 45.0%
TCTAAGCCGATCCTCTTTGT+TGG - Chr3:100058739-100058758 None:intergenic 45.0%
TGCAATACGCGAAGAACTGA+AGG + Chr3:100058455-100058474 MsG0380017727.01.T01:CDS 45.0%
TGGTTTCGAAAGGTTGCACA+AGG + Chr3:100058397-100058416 MsG0380017727.01.T01:CDS 45.0%
TTCGAAAGGTTGCACAAGGA+TGG + Chr3:100058401-100058420 MsG0380017727.01.T01:CDS 45.0%
! GGATCGGCTTAGAAAAGCAA+TGG + Chr3:100058746-100058765 MsG0380017727.01.T01:CDS 45.0%
! GGTGATATCTAGAGCCTAGA+GGG + Chr3:100057564-100057583 MsG0380017727.01.T01:intron 45.0%
! TAGAAAAGCAATGGAAGCGC+AGG + Chr3:100058755-100058774 MsG0380017727.01.T01:CDS 45.0%
! TAGAGACTCCAATTTGGGAC+CGG - Chr3:100056848-100056867 None:intergenic 45.0%
! TGCTCTAACCCTTTTTCCGA+CGG - Chr3:100058232-100058251 None:intergenic 45.0%
! TGGGTTTTCTGATGCTGTAC+TGG - Chr3:100058550-100058569 None:intergenic 45.0%
! TGGTGATATCTAGAGCCTAG+AGG + Chr3:100057563-100057582 MsG0380017727.01.T01:intron 45.0%
!! ATTATCGGTGCTGGGAAGAT+GGG + Chr3:100058354-100058373 MsG0380017727.01.T01:CDS 45.0%
!! GGCTTTGGAAGAAACATCAG+TGG + Chr3:100058186-100058205 MsG0380017727.01.T01:CDS 45.0%
!!! TTTGAAGCTTTTGGGACCTG+TGG + Chr3:100057530-100057549 MsG0380017727.01.T01:intron 45.0%
AGGAGCAGCATTGTCGTCAT+TGG + Chr3:100057712-100057731 MsG0380017727.01.T01:CDS 50.0%
CACTTTCTCCGGTCCCAAAT+TGG + Chr3:100056837-100056856 MsG0380017727.01.T01:CDS 50.0%
CATCCTGGCATTATCATGCG+AGG - Chr3:100058331-100058350 None:intergenic 50.0%
CCAGCAAGTCAAGATGTTGG+AGG + Chr3:100058603-100058622 MsG0380017727.01.T01:CDS 50.0%
CCATGACCTCTTTGACACCA+CGG - Chr3:100057905-100057924 None:intergenic 50.0%
CCTCCAGCAAGTCAAGATGT+TGG + Chr3:100058600-100058619 MsG0380017727.01.T01:CDS 50.0%
CTCTTTGACACCACGGTGTT+GGG - Chr3:100057898-100057917 None:intergenic 50.0%
GCATTATCATGCGAGGCTTC+AGG - Chr3:100058324-100058343 None:intergenic 50.0%
GCCGTTTCAACCACTTTCTC+CGG + Chr3:100056826-100056845 MsG0380017727.01.T01:CDS 50.0%
GGACAAGGAGTTAACGGCTT+TGG + Chr3:100058171-100058190 MsG0380017727.01.T01:CDS 50.0%
GGAGCAGCATTGTCGTCATT+GGG + Chr3:100057713-100057732 MsG0380017727.01.T01:CDS 50.0%
TCACCACAACCATCAACCAC+AGG - Chr3:100057549-100057568 None:intergenic 50.0%
TGGCAGCCACAACCTCTTTA+AGG - Chr3:100058719-100058738 None:intergenic 50.0%
TGGCTGCCAACAAAGAGGAT+CGG + Chr3:100058730-100058749 MsG0380017727.01.T01:CDS 50.0%
TTGCCATTCCGGAAGCAGAA+TGG + Chr3:100057775-100057794 MsG0380017727.01.T01:CDS 50.0%
! AAGCCTCGCATGATAATGCC+AGG + Chr3:100058325-100058344 MsG0380017727.01.T01:CDS 50.0%
! AGGATGCTGATTATCGGTGC+TGG + Chr3:100058345-100058364 MsG0380017727.01.T01:CDS 50.0%
! CAATTTGGGACCGGAGAAAG+TGG - Chr3:100056839-100056858 None:intergenic 50.0%
! GGATGCTGATTATCGGTGCT+GGG + Chr3:100058346-100058365 MsG0380017727.01.T01:CDS 50.0%
!! AGCACCGATAATCAGCATCC+TGG - Chr3:100058346-100058365 None:intergenic 50.0%
!! CATCTTGACTTGCTGGAGGA+AGG - Chr3:100058599-100058618 None:intergenic 50.0%
!! CCAACATCTTGACTTGCTGG+AGG - Chr3:100058603-100058622 None:intergenic 50.0%
!! CCTCCAACATCTTGACTTGC+TGG - Chr3:100058606-100058625 None:intergenic 50.0%
!! GATTATCGGTGCTGGGAAGA+TGG + Chr3:100058353-100058372 MsG0380017727.01.T01:CDS 50.0%
!! TGCTCGCAAAGCTCTGAAAC+AGG - Chr3:100058031-100058050 None:intergenic 50.0%
!!! CTTTTGGGACCTGTGGTTGA+TGG + Chr3:100057537-100057556 MsG0380017727.01.T01:intron 50.0%
AGGCCATTCTGCTTCCGGAA+TGG - Chr3:100057781-100057800 None:intergenic 55.0%
CCTCTTTGACACCACGGTGT+TGG - Chr3:100057899-100057918 None:intergenic 55.0%
GAGGAGCTCAAGAGCAGAGA+GGG - Chr3:100057006-100057025 None:intergenic 55.0%
GGTTGTGGCTGCCAACAAAG+AGG + Chr3:100058725-100058744 MsG0380017727.01.T01:CDS 55.0%
TCTGAGCACCTGCAACCGAA+TGG + Chr3:100057851-100057870 MsG0380017727.01.T01:CDS 55.0%
TGAAGCTTGGAGAGACTCGC+TGG + Chr3:100058806-100058825 MsG0380017727.01.T01:CDS 55.0%
TGAGGAGCTCAAGAGCAGAG+AGG - Chr3:100057007-100057026 None:intergenic 55.0%
TGCTGGGAAGATGGGAAAGC+TGG + Chr3:100058362-100058381 MsG0380017727.01.T01:CDS 55.0%
TTCTGTGAGTTCAGCTGCCG+TGG + Chr3:100058278-100058297 MsG0380017727.01.T01:CDS 55.0%
! ATGGAAGCGCAGGCGATCAT+TGG + Chr3:100058765-100058784 MsG0380017727.01.T01:CDS 55.0%
! CCAACACCGTGGTGTCAAAG+AGG + Chr3:100057896-100057915 MsG0380017727.01.T01:CDS 55.0%
! CCGTGGTGTCAAAGAGGTCA+TGG + Chr3:100057902-100057921 MsG0380017727.01.T01:CDS 55.0%
! GCTCTAGGCCATTCTGCTTC+CGG - Chr3:100057786-100057805 None:intergenic 55.0%
!! GGACCTGTGGTTGATGGTTG+TGG + Chr3:100057543-100057562 MsG0380017727.01.T01:intron 55.0%
CTCAAGAGCAGAGAGGGTGG+TGG - Chr3:100057000-100057019 None:intergenic 60.0%
GAGCTCAAGAGCAGAGAGGG+TGG - Chr3:100057003-100057022 None:intergenic 60.0%
GAGTTCAGCTGCCGTGGAGT+TGG + Chr3:100058284-100058303 MsG0380017727.01.T01:CDS 60.0%
GGCTCAGTGTGCACACTGCT+CGG + Chr3:100057734-100057753 MsG0380017727.01.T01:CDS 60.0%
GTCGCTCTATCCCAACACCG+TGG + Chr3:100057885-100057904 MsG0380017727.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100056798 100058866 100056798 ID=MsG0380017727.01;Name=MsG0380017727.01
Chr3 mRNA 100056798 100058866 100056798 ID=MsG0380017727.01.T01;Parent=MsG0380017727.01;Name=MsG0380017727.01.T01;_AED=0.41;_eAED=0.45;_QI=0|0|0.33|1|0.5|0.66|3|0|448
Chr3 exon 100056798 100057048 100056798 ID=MsG0380017727.01.T01:exon:2722;Parent=MsG0380017727.01.T01
Chr3 exon 100057698 100057942 100057698 ID=MsG0380017727.01.T01:exon:2723;Parent=MsG0380017727.01.T01
Chr3 exon 100058016 100058866 100058016 ID=MsG0380017727.01.T01:exon:2724;Parent=MsG0380017727.01.T01
Chr3 CDS 100056798 100057048 100056798 ID=MsG0380017727.01.T01:cds;Parent=MsG0380017727.01.T01
Chr3 CDS 100057698 100057942 100057698 ID=MsG0380017727.01.T01:cds;Parent=MsG0380017727.01.T01
Chr3 CDS 100058016 100058866 100058016 ID=MsG0380017727.01.T01:cds;Parent=MsG0380017727.01.T01
Gene Sequence

>MsG0380017727.01.T01

TTAGGGTTAGGGTTCTCACTCAACAATGGCCGTTTCAACCACTTTCTCCGGTCCCAAATTGGAGTCTCTATTCCTCAGATCTTCTTCGAGGCTATCCATTCCCACCCATTTATCAGTTTTGGGAAACCCAGAACCACTTTCACTCAAAAAGGAATTATTCGATGTGATGCTCAGAATTCTGATCAAACTAATGGTAGCACCACCACCCTCTCTGCTCTTGAGCTCCTCAAAACTTCTGCAGCTGATAGTAAGGTACACAAAGGAAAGGAGCAGCATTGTCGTCATTGGGCTCAGTGTGCACACTGCTCGGTAGAAATGCGTGAAAAACTTGCCATTCCGGAAGCAGAATGGCCTAGAGCTATTGCAGAGTTGTGCAGTCTCAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTCGTCGCTCTATCCCAACACCGTGGTGTCAAAGAGGTCATGGAATGGATGTCAAAAGTAAACAAGTTCTGTTCCTGTTTCAGAGCTTTGCGAGCACCGTTTTTACTTTACAACAAAGATGCCACACAACATCTTTTTCAAGTATCAGCTGGTCTTGAGTCTCTTGTATTGGGAGAAGGTCAAATTCTTGCACAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAACGGCTTTGGAAGAAACATCAGTGGTCTATTCAAGCATGCAATAACCGTCGGAAAAAGGGTTAGAGCAGAGACTAATATTGCTGCTGGGGCAGTTTCTGTGAGTTCAGCTGCCGTGGAGTTGGCCTATATGAAGCTACCTGAAGCCTCGCATGATAATGCCAGGATGCTGATTATCGGTGCTGGGAAGATGGGAAAGCTGGTCATCAAACATTTGGTTTCGAAAGGTTGCACAAGGATGGTTGTTGTCAATAGAACCGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATAATTTACAAACCTCTTTCAGAAATGCTCTCTTGTGTTTCTGAAGCAGATGTGGTATTCACCAGTACAGCATCAGAAAACCCATTATTCATGAAAGATGACGTCAAAGACCTTCCTCCAGCAAGTCAAGATGTTGGAGGCCTTCGCCTTTTCATCGACATTTCTGTTCCTCGAAATGTTGGTTCATGTGTCTCAGATATTGAATCTGTTCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAACAAAGAGGATCGGCTTAGAAAAGCAATGGAAGCGCAGGCGATCATTGGTGAAGAGTTGAAACAATTTGAAGCTTGGAGAGACTCGCTGGAAACTGTTCCTACTATAAAAAAATTGAGCCTATGCTGA

Protein sequence

>MsG0380017727.01.T01

LGLGFSLNNGRFNHFLRSQIGVSIPQIFFEAIHSHPFISFGKPRTTFTQKGIIRCDAQNSDQTNGSTTTLSALELLKTSAADSKVHKGKEQHCRHWAQCAHCSVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVMEWMSKVNKFCSCFRALRAPFLLYNKDATQHLFQVSAGLESLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRAETNIAAGAVSVSSAAVELAYMKLPEASHDNARMLIIGAGKMGKLVIKHLVSKGCTRMVVVNRTEERVAAIREELKDIEIIYKPLSEMLSCVSEADVVFTSTASENPLFMKDDVKDLPPASQDVGGLRLFIDISVPRNVGSCVSDIESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIGEELKQFEAWRDSLETVPTIKKLSLC*