AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047496.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047496.01.T01 MTR_4g128590 92.517 294 6 1 41 334 1 278 0.0 560
MsG0880047496.01.T01 MTR_4g128410 79.643 280 52 1 52 331 6 280 2.51e-168 469
MsG0880047496.01.T01 MTR_4g128580 83.395 271 42 2 65 334 20 288 9.05e-166 463
MsG0880047496.01.T01 MTR_7g093530 78.246 285 54 2 47 331 3 279 4.59e-165 461
MsG0880047496.01.T01 MTR_4g128570 73.810 294 58 2 41 334 1 275 4.28e-160 448
MsG0880047496.01.T01 MTR_4g126920 76.753 271 59 1 61 331 15 281 3.71e-155 436
MsG0880047496.01.T01 MTR_4g128400 70.103 291 79 4 41 331 1 283 2.17e-149 422
MsG0880047496.01.T01 MTR_2g038860 72.857 280 74 1 52 331 9 286 9.72e-148 418
MsG0880047496.01.T01 MTR_2g038705 72.857 280 74 1 52 331 9 286 9.72e-148 418
MsG0880047496.01.T01 MTR_8g081040 68.493 292 79 2 42 333 5 283 3.98e-146 413
MsG0880047496.01.T01 MTR_3g084630 69.072 291 76 2 41 331 1 277 1.13e-144 410
MsG0880047496.01.T01 MTR_3g084620 69.072 291 76 2 41 331 1 277 1.34e-144 409
MsG0880047496.01.T01 MTR_8g102220 63.729 295 80 4 41 334 1 269 2.04e-129 370
MsG0880047496.01.T01 MTR_8g102910 53.191 282 128 3 51 331 1 279 3.38e-106 312
MsG0880047496.01.T01 MTR_6g088320 51.890 291 125 5 46 331 3 283 1.99e-105 310
MsG0880047496.01.T01 MTR_5g091730 50.859 291 130 3 41 331 1 278 6.26e-102 301
MsG0880047496.01.T01 MTR_7g084770 50.512 293 138 3 43 333 2 289 9.80e-102 301
MsG0880047496.01.T01 MTR_3g089540 53.788 264 114 1 68 331 27 282 1.84e-101 300
MsG0880047496.01.T01 MTR_7g084760 55.469 256 109 2 78 333 39 289 7.85e-101 299
MsG0880047496.01.T01 MTR_7g084750 54.826 259 106 3 78 333 39 289 7.09e-100 296
MsG0880047496.01.T01 MTR_6g033055 50.169 295 132 4 43 331 2 287 2.55e-98 292
MsG0880047496.01.T01 MTR_6g033085 50.172 291 133 3 48 331 2 287 2.91e-98 292
MsG0880047496.01.T01 MTR_1g105900 46.128 297 143 4 45 331 2 291 1.28e-94 283
MsG0880047496.01.T01 MTR_4g097640 47.751 289 140 6 44 331 9 287 3.34e-94 282
MsG0880047496.01.T01 MTR_4g097670 47.751 289 140 6 44 331 9 287 3.34e-94 282
MsG0880047496.01.T01 MTR_2g089140 47.735 287 142 4 49 331 4 286 2.01e-93 280
MsG0880047496.01.T01 MTR_4g097700 47.719 285 139 6 48 331 49 324 2.19e-93 281
MsG0880047496.01.T01 MTR_4g045853 45.675 289 150 3 49 333 5 290 7.02e-93 278
MsG0880047496.01.T01 MTR_1g105495 43.522 301 161 4 39 334 1 297 1.94e-87 265
MsG0880047496.01.T01 MTR_2g089140 51.339 224 104 2 112 331 1 223 1.01e-82 250
MsG0880047496.01.T01 MTR_8g013055 44.444 261 139 3 71 331 31 285 1.43e-76 237
MsG0880047496.01.T01 MTR_4g057450 39.365 315 151 10 43 331 4 304 1.73e-63 204
MsG0880047496.01.T01 MTR_7g056090 39.322 295 164 8 38 331 1 281 1.80e-63 203
MsG0880047496.01.T01 MTR_2g095800 41.481 270 137 9 70 331 53 309 1.00e-60 197
MsG0880047496.01.T01 MTR_7g102260 39.636 275 144 8 66 332 32 292 6.53e-59 191
MsG0880047496.01.T01 MTR_1g063020 40.230 261 134 7 79 331 48 294 4.47e-58 189
MsG0880047496.01.T01 MTR_8g064180 35.740 277 168 6 62 331 37 310 1.34e-56 186
MsG0880047496.01.T01 MTR_2g049130 37.543 293 151 9 55 331 1 277 1.42e-55 182
MsG0880047496.01.T01 MTR_2g049030 36.842 285 157 9 50 328 13 280 5.93e-55 181
MsG0880047496.01.T01 MTR_1g033420 37.984 258 148 5 79 331 41 291 6.12e-52 174
MsG0880047496.01.T01 MTR_5g029100 35.688 269 162 6 71 332 42 306 2.45e-51 174
MsG0880047496.01.T01 MTR_5g029100 33.333 291 171 7 49 332 1 275 8.39e-47 161
MsG0880047496.01.T01 MTR_8g090100 33.333 282 163 8 65 331 10 281 5.72e-45 156
MsG0880047496.01.T01 MTR_8g479340 44.118 102 53 2 233 334 41 138 2.85e-22 91.3
MsG0880047496.01.T01 MTR_8g032640 31.609 174 111 4 93 264 33 200 4.65e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047496.01.T01 AT5G57560 71.429 280 76 2 52 331 6 281 1.61e-157 442
MsG0880047496.01.T01 AT4G25810 73.571 280 69 2 52 331 9 283 8.96e-157 441
MsG0880047496.01.T01 AT5G57550 67.596 287 85 1 47 333 6 284 4.95e-152 428
MsG0880047496.01.T01 AT3G23730 66.667 288 93 3 47 334 5 289 1.47e-143 407
MsG0880047496.01.T01 AT4G30270 64.931 288 78 2 47 334 4 268 1.68e-142 404
MsG0880047496.01.T01 AT5G48070 67.293 266 77 2 68 332 26 282 4.30e-142 403
MsG0880047496.01.T01 AT4G14130 64.966 294 96 3 41 334 1 287 5.95e-140 398
MsG0880047496.01.T01 AT5G57530 67.658 269 76 2 67 332 23 283 1.63e-134 384
MsG0880047496.01.T01 AT5G57540 66.791 268 78 2 68 332 23 282 2.83e-133 381
MsG0880047496.01.T01 AT2G18800 60.201 299 108 4 41 331 1 296 1.02e-132 380
MsG0880047496.01.T01 AT4G30280 59.661 295 105 3 39 332 1 282 7.54e-130 372
MsG0880047496.01.T01 AT4G30290 62.021 287 95 3 47 332 4 277 1.79e-129 371
MsG0880047496.01.T01 AT1G65310 64.906 265 83 2 68 331 48 303 2.52e-127 367
MsG0880047496.01.T01 AT1G65310 64.906 265 83 2 68 331 26 281 3.78e-127 365
MsG0880047496.01.T01 AT4G25820 65.169 267 88 1 65 331 24 285 4.23e-126 363
MsG0880047496.01.T01 AT5G13870 57.480 254 103 2 78 331 39 287 7.96e-101 299
MsG0880047496.01.T01 AT5G13870 57.480 254 103 2 78 331 39 287 7.96e-101 299
MsG0880047496.01.T01 AT5G13870 57.480 254 103 2 78 331 39 287 7.96e-101 299
MsG0880047496.01.T01 AT4G28850 47.203 286 140 4 52 332 9 288 1.69e-96 288
MsG0880047496.01.T01 AT2G06850 50.347 288 134 3 50 333 10 292 1.94e-95 285
MsG0880047496.01.T01 AT5G65730 44.406 286 152 4 48 332 12 291 1.31e-92 278
MsG0880047496.01.T01 AT4G03210 47.119 295 145 5 41 333 1 286 5.38e-92 276
MsG0880047496.01.T01 AT4G37800 46.416 293 148 6 41 332 6 290 2.98e-90 272
MsG0880047496.01.T01 AT2G14620 45.936 283 140 3 56 331 18 294 4.74e-90 271
MsG0880047496.01.T01 AT1G11545 46.897 290 138 6 55 334 19 302 3.03e-89 270
MsG0880047496.01.T01 AT2G06850 54.978 231 99 2 101 331 5 230 4.32e-88 264
MsG0880047496.01.T01 AT4G03210 52.263 243 106 4 93 333 24 258 1.68e-85 259
MsG0880047496.01.T01 AT4G13090 48.276 290 125 8 56 331 10 288 7.10e-82 250
MsG0880047496.01.T01 AT2G14620 48.718 234 111 2 102 332 18 245 6.21e-80 244
MsG0880047496.01.T01 AT2G14620 49.554 224 104 2 111 331 16 233 5.11e-78 239
MsG0880047496.01.T01 AT4G13080 45.420 262 133 6 71 331 39 291 1.03e-75 235
MsG0880047496.01.T01 AT3G25050 42.912 261 143 4 71 331 35 289 2.43e-73 229
MsG0880047496.01.T01 AT3G44990 41.111 270 135 9 71 331 39 293 1.39e-58 191
MsG0880047496.01.T01 AT2G36870 41.111 270 137 8 70 331 42 297 2.11e-58 191
MsG0880047496.01.T01 AT1G10550 36.641 262 152 7 82 332 52 310 6.59e-52 174
MsG0880047496.01.T01 AT1G32170 34.602 289 175 7 53 331 9 293 1.47e-51 174
MsG0880047496.01.T01 AT1G14720 32.765 293 178 7 49 331 7 290 4.08e-51 172
MsG0880047496.01.T01 AT2G01850 32.646 291 181 7 49 331 7 290 3.42e-49 167
MsG0880047496.01.T01 AT4G18990 33.808 281 154 8 77 331 38 312 6.46e-45 157
MsG0880047496.01.T01 AT3G48580 34.510 255 144 8 78 331 41 273 1.70e-42 149
MsG0880047496.01.T01 AT4G18990 34.579 214 117 6 136 331 30 238 3.59e-37 135
MsG0880047496.01.T01 AT3G48580 33.190 232 133 7 101 331 4 214 6.99e-37 132
MsG0880047496.01.T01 AT2G36870 42.446 139 70 3 70 200 42 178 9.38e-29 109
MsG0880047496.01.T01 AT3G48580 30.196 255 135 9 78 331 41 253 3.84e-26 105

Find 97 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCATTGGTTGGCTCTT+TGG 0.217423 8:-87147731 None:intergenic
CAGGCTTGCATCTGGTCTTC+TGG 0.231062 8:+87147860 MsG0880047496.01.T01:CDS
TTCTCATTGGTTGGCTCTTT+GGG 0.238486 8:-87147730 None:intergenic
TCAGCCAAGGCAAAGGAAAT+AGG 0.272614 8:+87147464 MsG0880047496.01.T01:CDS
TCAAAGAATGAGTATCTCTT+TGG 0.281236 8:+87147179 MsG0880047496.01.T01:CDS
GGGAACAACAATTCTATCTA+TGG 0.295441 8:+87147485 MsG0880047496.01.T01:CDS
TTGTTCAGATTCTCAGTTGA+TGG 0.305775 8:+87147659 MsG0880047496.01.T01:intron
TTCACACTTATTCTATCATA+TGG 0.312027 8:+87147527 MsG0880047496.01.T01:CDS
CAAAGGCATTCATTACCATT+AGG 0.322287 8:-87147037 None:intergenic
AGAGATACTCATTCTTTGAT+TGG 0.324085 8:-87147175 None:intergenic
GTTTGTGGAATGCAGATAAC+TGG 0.328198 8:+87147762 MsG0880047496.01.T01:CDS
TGAGTTCTTGAACTCTCTAA+TGG 0.332319 8:-87147687 None:intergenic
GAGATAGACTATGAATTTCT+AGG 0.342269 8:+87147400 MsG0880047496.01.T01:CDS
CTTGACAAAGCATCTGGTTC+AGG 0.349485 8:+87147149 MsG0880047496.01.T01:CDS
TGAGAATATATTCAAGTTTG+TGG 0.357681 8:+87147747 MsG0880047496.01.T01:CDS
TCTTCTTGTTAGCTCCCTAA+TGG 0.360536 8:+87147022 MsG0880047496.01.T01:CDS
CTGGTCAAGGGAGGTTGAAA+TGG 0.362354 8:+87147963 MsG0880047496.01.T01:CDS
AAAGGCATTCATTACCATTA+GGG 0.373219 8:-87147036 None:intergenic
CAGCCAAGGCAAAGGAAATA+GGG 0.382115 8:+87147465 MsG0880047496.01.T01:CDS
CATTGGTTGGCTCTTTGGGA+AGG 0.395358 8:-87147726 None:intergenic
TGAGTAACTCACCATTGTTT+AGG 0.399360 8:-87147118 None:intergenic
AAACTTGAATATATTCTCAT+TGG 0.404968 8:-87147743 None:intergenic
GTTCCCTATTTCCTTTGCCT+TGG 0.412829 8:-87147468 None:intergenic
CAAAGAATGAGTATCTCTTT+GGG 0.422787 8:+87147180 MsG0880047496.01.T01:CDS
AGGACTCTGCCAGAGGTTCA+TGG 0.427318 8:+87147918 MsG0880047496.01.T01:CDS
TTCATGGCTTTCACAGGAGT+TGG 0.429392 8:+87147934 MsG0880047496.01.T01:CDS
CTGTGAAAGCCATGAACCTC+TGG 0.431495 8:-87147927 None:intergenic
TTAATGCTCAGGCTTGCATC+TGG 0.449779 8:+87147852 MsG0880047496.01.T01:CDS
ACAGTGCCAGCAGAGTTTCC+AGG 0.451981 8:-87147230 None:intergenic
ATTGGTTGGCTCTTTGGGAA+GGG 0.452250 8:-87147725 None:intergenic
GAGAAACTTACATAATCCTC+TGG 0.455201 8:-87147555 None:intergenic
GAGTTCTTGAACTCTCTAAT+GGG 0.471628 8:-87147686 None:intergenic
TTGAATATATTCTCATTGGT+TGG 0.473138 8:-87147739 None:intergenic
CAAACACTTCATTGTAGAGA+TGG 0.473864 8:+87146962 MsG0880047496.01.T01:CDS
TCACAGGAGTTGGATGCTAC+TGG 0.474886 8:+87147944 MsG0880047496.01.T01:CDS
CTATCACTTGACAAAGCATC+TGG 0.476052 8:+87147143 MsG0880047496.01.T01:CDS
TGTTTGCAGCTATCTTCAAA+AGG 0.478382 8:+87147364 MsG0880047496.01.T01:intron
CAGAGGTTCATGGCTTTCAC+AGG 0.492586 8:+87147928 MsG0880047496.01.T01:CDS
ATATAACATGGGGAGATGGC+CGG 0.493673 8:+87147087 MsG0880047496.01.T01:CDS
CCTCGGCAGTTAACTGCAGC+CGG 0.496217 8:+87146584 MsG0880047496.01.T01:CDS
ACATTAGTGTGAAGGATGTA+TGG 0.498460 8:-87147439 None:intergenic
CTGCCGAGGAATTTGAAATC+CGG 0.498705 8:-87146603 None:intergenic
TATAACATGGGGAGATGGCC+GGG 0.500319 8:+87147088 MsG0880047496.01.T01:CDS
GAGTTGGATGCTACTGGTCA+AGG 0.502874 8:+87147950 MsG0880047496.01.T01:CDS
CTTGTCCCTGGAAACTCTGC+TGG 0.507742 8:+87147224 MsG0880047496.01.T01:CDS
CCCATGTTATATCAAAGTCT+TGG 0.508712 8:-87147076 None:intergenic
AAGTGTGAAAATCAGCTGTT+GGG 0.511857 8:-87147513 None:intergenic
TTCAAGAACTCAGAGACTAT+TGG 0.514298 8:+87147698 MsG0880047496.01.T01:CDS
TTTCTGTAGGAAGCTGTGAA+TGG 0.517237 8:-87147827 None:intergenic
GTCTGCATAAATGCTTTCCT+CGG 0.523178 8:+87146541 None:intergenic
TAAGTGTGAAAATCAGCTGT+TGG 0.524540 8:-87147514 None:intergenic
GTGGACTAGTCAAGACAGAT+TGG 0.526498 8:+87147795 MsG0880047496.01.T01:CDS
ATGCAACTCAAACTTGTCCC+TGG 0.528344 8:+87147212 MsG0880047496.01.T01:CDS
TTCAACTAGTTCTGCATCAA+AGG 0.528786 8:+87147898 MsG0880047496.01.T01:CDS
CAGCCGGATTTCAAATTCCT+CGG 0.530415 8:+87146600 MsG0880047496.01.T01:CDS
TGGTCAAGGGAGGTTGAAAT+GGG 0.531256 8:+87147964 MsG0880047496.01.T01:CDS
CTGAGCATTAAAATTTCTGT+AGG 0.531432 8:-87147840 None:intergenic
TATCTTCAAAAGGATCAACT+TGG 0.532938 8:+87147374 MsG0880047496.01.T01:CDS
GTAATGAATGCCTTTGCTGC+TGG 0.536304 8:+87147044 MsG0880047496.01.T01:CDS
AGATACAAAACGATTTCCAC+AGG 0.547822 8:+87148021 MsG0880047496.01.T01:CDS
GTTCAAGTTACCAGCAGCAA+AGG 0.548175 8:-87147054 None:intergenic
AGAAACTTACATAATCCTCT+GGG 0.548931 8:-87147554 None:intergenic
ACCAAGACTTTGATATAACA+TGG 0.553201 8:+87147075 MsG0880047496.01.T01:CDS
TTTGATATAACATGGGGAGA+TGG 0.565301 8:+87147083 MsG0880047496.01.T01:CDS
TCCTCGGCAGTTAACTGCCG+AGG 0.569355 8:+87146616 MsG0880047496.01.T01:CDS
CCCTCGGCAGTTAACTGCCG+AGG 0.576867 8:-87146617 None:intergenic
TAAGAGTGGTTGCACTCTGG+AGG 0.577789 8:-87148049 None:intergenic
CATTGTTTAGGATCTTTGCC+CGG 0.582367 8:-87147106 None:intergenic
CAGTGCCAGCAGAGTTTCCA+GGG 0.583065 8:-87147229 None:intergenic
CCTCGGCAGTTAACTGCCGA+GGG 0.588839 8:+87146617 MsG0880047496.01.T01:CDS
TGCAGAACTAGTTGAACCAC+AGG 0.589225 8:-87147891 None:intergenic
ATCTTCAAAAGGATCAACTT+GGG 0.591775 8:+87147375 MsG0880047496.01.T01:CDS
ATTAGGGAGCTAACAAGAAG+AGG 0.592984 8:-87147020 None:intergenic
GATAACTGGGCAACAAGAGG+TGG 0.595641 8:+87147776 MsG0880047496.01.T01:CDS
AGTTGGATGCTACTGGTCAA+GGG 0.605563 8:+87147951 MsG0880047496.01.T01:CDS
TTGACTACCGAGGAATTCCT+CGG 0.608802 8:+87146567 MsG0880047496.01.T01:CDS
CCAAGACTTTGATATAACAT+GGG 0.610001 8:+87147076 MsG0880047496.01.T01:CDS
TTAACTGCCGAGGAATTCCT+CGG 0.615472 8:-87146574 None:intergenic
GGCTGAAAACATTAGTGTGA+AGG 0.617871 8:-87147447 None:intergenic
TTTGTGGAATGCAGATAACT+GGG 0.620067 8:+87147763 MsG0880047496.01.T01:CDS
TCGGCAGTTAACTGCCGAGG+GGG 0.629736 8:+87146619 MsG0880047496.01.T01:CDS
GCAGATAACTGGGCAACAAG+AGG 0.630081 8:+87147773 MsG0880047496.01.T01:CDS
TCTTCTGGAGCATCATCCTG+TGG 0.630255 8:+87147875 MsG0880047496.01.T01:CDS
CCGGCTGCAGTTAACTGCCG+AGG 0.639724 8:-87146584 None:intergenic
GCATCAAAGGACTCTGCCAG+AGG 0.647601 8:+87147911 MsG0880047496.01.T01:CDS
GAATTTCTAGGAAATGTAAG+TGG 0.651069 8:+87147412 MsG0880047496.01.T01:CDS
CACTCTGGAGGTAAACCCTG+TGG 0.651377 8:-87148037 None:intergenic
TCCTCGGTAGTCAACTGCCG+AGG 0.658382 8:-87146558 None:intergenic
TCCTCGGCAGTTGACTACCG+AGG 0.665431 8:+87146557 MsG0880047496.01.T01:CDS
CGGGCAAAGATCCTAAACAA+TGG 0.666101 8:+87147107 MsG0880047496.01.T01:CDS
AAACTTACATAATCCTCTGG+GGG 0.667478 8:-87147552 None:intergenic
GATACAAAACGATTTCCACA+GGG 0.673697 8:+87148022 MsG0880047496.01.T01:CDS
CAAGACTTTGATATAACATG+GGG 0.676264 8:+87147077 MsG0880047496.01.T01:CDS
TGGATGCTACTGGTCAAGGG+AGG 0.687088 8:+87147954 MsG0880047496.01.T01:CDS
GAAACTTACATAATCCTCTG+GGG 0.703471 8:-87147553 None:intergenic
CTCGGCAGTTAACTGCCGAG+GGG 0.704786 8:+87146618 MsG0880047496.01.T01:CDS
AGTCAAGACAGATTGGACAA+AGG 0.729558 8:+87147802 MsG0880047496.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATATTATCATCACTAA+CGG + Chr8:87146845-87146864 MsG0880047496.01.T01:intron 15.0%
!! AAACTTGAATATATTCTCAT+TGG - Chr8:87147746-87147765 None:intergenic 20.0%
!! AGTTTGTGTTAACTTATTAA+AGG + Chr8:87147280-87147299 MsG0880047496.01.T01:intron 20.0%
! AAAACATAAAATCTTTGACG+CGG - Chr8:87146729-87146748 None:intergenic 25.0%
! TTCACACTTATTCTATCATA+TGG + Chr8:87147527-87147546 MsG0880047496.01.T01:CDS 25.0%
! TTGAAACTTGAAAGTAGTAA+GGG - Chr8:87146945-87146964 None:intergenic 25.0%
! TTGAATATATTCTCATTGGT+TGG - Chr8:87147742-87147761 None:intergenic 25.0%
! TTGATGTACATAAATAAACG+CGG + Chr8:87146785-87146804 MsG0880047496.01.T01:intron 25.0%
!! GGTATTTAAGATGTAGAATA+AGG - Chr8:87147600-87147619 None:intergenic 25.0%
!! TGAGAATATATTCAAGTTTG+TGG + Chr8:87147747-87147766 MsG0880047496.01.T01:CDS 25.0%
!! TTTGAAACTTGAAAGTAGTA+AGG - Chr8:87146946-87146965 None:intergenic 25.0%
ACCAAGACTTTGATATAACA+TGG + Chr8:87147075-87147094 MsG0880047496.01.T01:CDS 30.0%
AGAAACTTACATAATCCTCT+GGG - Chr8:87147557-87147576 None:intergenic 30.0%
AGAGATACTCATTCTTTGAT+TGG - Chr8:87147178-87147197 None:intergenic 30.0%
AGATGTAGAATAAGGAAACA+CGG - Chr8:87147592-87147611 None:intergenic 30.0%
ATCTTCAAAAGGATCAACTT+GGG + Chr8:87147375-87147394 MsG0880047496.01.T01:CDS 30.0%
CAAAGAATGAGTATCTCTTT+GGG + Chr8:87147180-87147199 MsG0880047496.01.T01:CDS 30.0%
CAAGACTTTGATATAACATG+GGG + Chr8:87147077-87147096 MsG0880047496.01.T01:CDS 30.0%
CCAAGACTTTGATATAACAT+GGG + Chr8:87147076-87147095 MsG0880047496.01.T01:CDS 30.0%
CTGAGCATTAAAATTTCTGT+AGG - Chr8:87147843-87147862 None:intergenic 30.0%
GAGATAGACTATGAATTTCT+AGG + Chr8:87147400-87147419 MsG0880047496.01.T01:CDS 30.0%
TAAAAATGTGTCCAATTGAC+AGG - Chr8:87146765-87146784 None:intergenic 30.0%
TAGAAGTGAATGATGAAGAA+GGG - Chr8:87146903-87146922 None:intergenic 30.0%
TATCTTCAAAAGGATCAACT+TGG + Chr8:87147374-87147393 MsG0880047496.01.T01:CDS 30.0%
TCAAAGAATGAGTATCTCTT+TGG + Chr8:87147179-87147198 MsG0880047496.01.T01:CDS 30.0%
TTAGAAGTGAATGATGAAGA+AGG - Chr8:87146904-87146923 None:intergenic 30.0%
! GAATTTCTAGGAAATGTAAG+TGG + Chr8:87147412-87147431 MsG0880047496.01.T01:CDS 30.0%
!! AAAGGCATTCATTACCATTA+GGG - Chr8:87147039-87147058 None:intergenic 30.0%
!! CTACAGAAATTTTAATGCTC+AGG + Chr8:87147841-87147860 MsG0880047496.01.T01:CDS 30.0%
AAACTTACATAATCCTCTGG+GGG - Chr8:87147555-87147574 None:intergenic 35.0%
AAGTGTGAAAATCAGCTGTT+GGG - Chr8:87147516-87147535 None:intergenic 35.0%
ACATTAGTGTGAAGGATGTA+TGG - Chr8:87147442-87147461 None:intergenic 35.0%
AGATACAAAACGATTTCCAC+AGG + Chr8:87148021-87148040 MsG0880047496.01.T01:CDS 35.0%
ATGTAAGTCTATATGCATGC+AGG - Chr8:87147622-87147641 None:intergenic 35.0%
ATGTAGAATAAGGAAACACG+GGG - Chr8:87147590-87147609 None:intergenic 35.0%
CAAACACTTCATTGTAGAGA+TGG + Chr8:87146962-87146981 MsG0880047496.01.T01:CDS 35.0%
CCCATGTTATATCAAAGTCT+TGG - Chr8:87147079-87147098 None:intergenic 35.0%
GAAACTTACATAATCCTCTG+GGG - Chr8:87147556-87147575 None:intergenic 35.0%
GAGAAACTTACATAATCCTC+TGG - Chr8:87147558-87147577 None:intergenic 35.0%
GAGTTCTTGAACTCTCTAAT+GGG - Chr8:87147689-87147708 None:intergenic 35.0%
GATACAAAACGATTTCCACA+GGG + Chr8:87148022-87148041 MsG0880047496.01.T01:CDS 35.0%
GATGTAGAATAAGGAAACAC+GGG - Chr8:87147591-87147610 None:intergenic 35.0%
GGGAACAACAATTCTATCTA+TGG + Chr8:87147485-87147504 MsG0880047496.01.T01:CDS 35.0%
GTATGCAATCAATGTAAAGC+AGG - Chr8:87147315-87147334 None:intergenic 35.0%
TAAGTGTGAAAATCAGCTGT+TGG - Chr8:87147517-87147536 None:intergenic 35.0%
TGAGTAACTCACCATTGTTT+AGG - Chr8:87147121-87147140 None:intergenic 35.0%
TGAGTTCTTGAACTCTCTAA+TGG - Chr8:87147690-87147709 None:intergenic 35.0%
TGTAAGTCTATATGCATGCA+GGG - Chr8:87147621-87147640 None:intergenic 35.0%
TGTTTGCAGCTATCTTCAAA+AGG + Chr8:87147364-87147383 MsG0880047496.01.T01:intron 35.0%
TTCAAGAACTCAGAGACTAT+TGG + Chr8:87147698-87147717 MsG0880047496.01.T01:CDS 35.0%
TTGTTCAGATTCTCAGTTGA+TGG + Chr8:87147659-87147678 MsG0880047496.01.T01:intron 35.0%
TTTGATATAACATGGGGAGA+TGG + Chr8:87147083-87147102 MsG0880047496.01.T01:CDS 35.0%
TTTGTGGAATGCAGATAACT+GGG + Chr8:87147763-87147782 MsG0880047496.01.T01:CDS 35.0%
!! CAAAGGCATTCATTACCATT+AGG - Chr8:87147040-87147059 None:intergenic 35.0%
!! TTCAACTAGTTCTGCATCAA+AGG + Chr8:87147898-87147917 MsG0880047496.01.T01:CDS 35.0%
AAATGTGTCCAATTGACAGG+TGG - Chr8:87146762-87146781 None:intergenic 40.0%
AGTCAAGACAGATTGGACAA+AGG + Chr8:87147802-87147821 MsG0880047496.01.T01:CDS 40.0%
ATTAGGGAGCTAACAAGAAG+AGG - Chr8:87147023-87147042 None:intergenic 40.0%
ATTTGAAAGAGCCAAGAAGC+TGG - Chr8:87146820-87146839 None:intergenic 40.0%
GAATGATGAAGAAGGGTGAA+TGG - Chr8:87146896-87146915 None:intergenic 40.0%
GGCTGAAAACATTAGTGTGA+AGG - Chr8:87147450-87147469 None:intergenic 40.0%
GTTTGTGGAATGCAGATAAC+TGG + Chr8:87147762-87147781 MsG0880047496.01.T01:CDS 40.0%
TCTTCTTGTTAGCTCCCTAA+TGG + Chr8:87147022-87147041 MsG0880047496.01.T01:CDS 40.0%
TGACAATACCACCTGTCAAT+TGG + Chr8:87146751-87146770 MsG0880047496.01.T01:intron 40.0%
TGCTGTTCACACATTAGAGA+AGG - Chr8:87146674-87146693 None:intergenic 40.0%
TTCACACATTAGAGAAGGCT+GGG - Chr8:87146669-87146688 None:intergenic 40.0%
TTTCTGTAGGAAGCTGTGAA+TGG - Chr8:87147830-87147849 None:intergenic 40.0%
! AATGTTTTCAGCCAAGGCAA+AGG + Chr8:87147457-87147476 MsG0880047496.01.T01:CDS 40.0%
! ATTCTCATTGGTTGGCTCTT+TGG - Chr8:87147734-87147753 None:intergenic 40.0%
! CACACTAATGTTTTCAGCCA+AGG + Chr8:87147451-87147470 MsG0880047496.01.T01:CDS 40.0%
! CATTGTTTAGGATCTTTGCC+CGG - Chr8:87147109-87147128 None:intergenic 40.0%
! CTATCACTTGACAAAGCATC+TGG + Chr8:87147143-87147162 MsG0880047496.01.T01:CDS 40.0%
! TTCTCATTGGTTGGCTCTTT+GGG - Chr8:87147733-87147752 None:intergenic 40.0%
AGTTGGATGCTACTGGTCAA+GGG + Chr8:87147951-87147970 MsG0880047496.01.T01:CDS 45.0%
ATATAACATGGGGAGATGGC+CGG + Chr8:87147087-87147106 MsG0880047496.01.T01:CDS 45.0%
ATGCAACTCAAACTTGTCCC+TGG + Chr8:87147212-87147231 MsG0880047496.01.T01:CDS 45.0%
CAGCCAAGGCAAAGGAAATA+GGG + Chr8:87147465-87147484 MsG0880047496.01.T01:CDS 45.0%
CAGCCGGATTTCAAATTCCT+CGG + Chr8:87146600-87146619 MsG0880047496.01.T01:CDS 45.0%
CGGGCAAAGATCCTAAACAA+TGG + Chr8:87147107-87147126 MsG0880047496.01.T01:CDS 45.0%
GTAATGAATGCCTTTGCTGC+TGG + Chr8:87147044-87147063 MsG0880047496.01.T01:CDS 45.0%
GTTCACACATTAGAGAAGGC+TGG - Chr8:87146670-87146689 None:intergenic 45.0%
GTTCCCTATTTCCTTTGCCT+TGG - Chr8:87147471-87147490 None:intergenic 45.0%
TCAGCCAAGGCAAAGGAAAT+AGG + Chr8:87147464-87147483 MsG0880047496.01.T01:CDS 45.0%
TGATGAAGAAGGGTGAATGG+TGG - Chr8:87146893-87146912 None:intergenic 45.0%
TGCAGAACTAGTTGAACCAC+AGG - Chr8:87147894-87147913 None:intergenic 45.0%
TGGTCAAGGGAGGTTGAAAT+GGG + Chr8:87147964-87147983 MsG0880047496.01.T01:CDS 45.0%
TTAACTGCCGAGGAATTCCT+CGG - Chr8:87146577-87146596 None:intergenic 45.0%
TTAATGCTCAGGCTTGCATC+TGG + Chr8:87147852-87147871 MsG0880047496.01.T01:CDS 45.0%
TTCATGGCTTTCACAGGAGT+TGG + Chr8:87147934-87147953 MsG0880047496.01.T01:CDS 45.0%
TTGACTACCGAGGAATTCCT+CGG + Chr8:87146567-87146586 MsG0880047496.01.T01:CDS 45.0%
! AAAATACGCTTTTGCCCCCT+CGG - Chr8:87146636-87146655 None:intergenic 45.0%
! ATTGGTTGGCTCTTTGGGAA+GGG - Chr8:87147728-87147747 None:intergenic 45.0%
! CTGCCGAGGAATTTGAAATC+CGG - Chr8:87146606-87146625 None:intergenic 45.0%
! CTTGACAAAGCATCTGGTTC+AGG + Chr8:87147149-87147168 MsG0880047496.01.T01:CDS 45.0%
! GTTCAAGTTACCAGCAGCAA+AGG - Chr8:87147057-87147076 None:intergenic 45.0%
!! GTGGACTAGTCAAGACAGAT+TGG + Chr8:87147795-87147814 MsG0880047496.01.T01:CDS 45.0%
CAGAGGTTCATGGCTTTCAC+AGG + Chr8:87147928-87147947 MsG0880047496.01.T01:CDS 50.0%
CTATCATATGGAACCCCCAG+AGG + Chr8:87147539-87147558 MsG0880047496.01.T01:CDS 50.0%
CTGGTCAAGGGAGGTTGAAA+TGG + Chr8:87147963-87147982 MsG0880047496.01.T01:CDS 50.0%
CTGTGAAAGCCATGAACCTC+TGG - Chr8:87147930-87147949 None:intergenic 50.0%
GAGTTGGATGCTACTGGTCA+AGG + Chr8:87147950-87147969 MsG0880047496.01.T01:CDS 50.0%
GATAACTGGGCAACAAGAGG+TGG + Chr8:87147776-87147795 MsG0880047496.01.T01:CDS 50.0%
GCAGATAACTGGGCAACAAG+AGG + Chr8:87147773-87147792 MsG0880047496.01.T01:CDS 50.0%
TAAGAGTGGTTGCACTCTGG+AGG - Chr8:87148052-87148071 None:intergenic 50.0%
TATAACATGGGGAGATGGCC+GGG + Chr8:87147088-87147107 MsG0880047496.01.T01:CDS 50.0%
TCACAGGAGTTGGATGCTAC+TGG + Chr8:87147944-87147963 MsG0880047496.01.T01:CDS 50.0%
! CATTGGTTGGCTCTTTGGGA+AGG - Chr8:87147729-87147748 None:intergenic 50.0%
!! TCTTCTGGAGCATCATCCTG+TGG + Chr8:87147875-87147894 MsG0880047496.01.T01:CDS 50.0%
ACAGTGCCAGCAGAGTTTCC+AGG - Chr8:87147233-87147252 None:intergenic 55.0%
AGGACTCTGCCAGAGGTTCA+TGG + Chr8:87147918-87147937 MsG0880047496.01.T01:CDS 55.0%
CAGTGCCAGCAGAGTTTCCA+GGG - Chr8:87147232-87147251 None:intergenic 55.0%
CTTGTCCCTGGAAACTCTGC+TGG + Chr8:87147224-87147243 MsG0880047496.01.T01:CDS 55.0%
GCATCAAAGGACTCTGCCAG+AGG + Chr8:87147911-87147930 MsG0880047496.01.T01:CDS 55.0%
GGCAACTGTGTCCAGCTTCT+TGG + Chr8:87146806-87146825 MsG0880047496.01.T01:intron 55.0%
TGGATGCTACTGGTCAAGGG+AGG + Chr8:87147954-87147973 MsG0880047496.01.T01:CDS 55.0%
! CACTCTGGAGGTAAACCCTG+TGG - Chr8:87148040-87148059 None:intergenic 55.0%
! CAGGCTTGCATCTGGTCTTC+TGG + Chr8:87147860-87147879 MsG0880047496.01.T01:CDS 55.0%
CCTCGGCAGTTAACTGCAGC+CGG + Chr8:87146584-87146603 MsG0880047496.01.T01:CDS 60.0%
CCTCGGCAGTTAACTGCCGA+GGG + Chr8:87146617-87146636 MsG0880047496.01.T01:CDS 60.0%
CTCGGCAGTTAACTGCCGAG+GGG + Chr8:87146618-87146637 MsG0880047496.01.T01:CDS 60.0%
TCCTCGGCAGTTAACTGCCG+AGG + Chr8:87146616-87146635 MsG0880047496.01.T01:CDS 60.0%
TCCTCGGCAGTTGACTACCG+AGG + Chr8:87146557-87146576 MsG0880047496.01.T01:CDS 60.0%
TCCTCGGTAGTCAACTGCCG+AGG - Chr8:87146561-87146580 None:intergenic 60.0%
TCGGCAGTTAACTGCCGAGG+GGG + Chr8:87146619-87146638 MsG0880047496.01.T01:CDS 60.0%
CCCTCGGCAGTTAACTGCCG+AGG - Chr8:87146620-87146639 None:intergenic 65.0%
CCGGCTGCAGTTAACTGCCG+AGG - Chr8:87146587-87146606 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 87146551 87148072 87146551 ID=MsG0880047496.01;Name=MsG0880047496.01
Chr8 mRNA 87146551 87148072 87146551 ID=MsG0880047496.01.T01;Parent=MsG0880047496.01;Name=MsG0880047496.01.T01;_AED=0.50;_eAED=0.56;_QI=0|0|0|1|0.66|0.75|4|0|334
Chr8 exon 87146551 87146648 87146551 ID=MsG0880047496.01.T01:exon:18002;Parent=MsG0880047496.01.T01
Chr8 exon 87146959 87147265 87146959 ID=MsG0880047496.01.T01:exon:18003;Parent=MsG0880047496.01.T01
Chr8 exon 87147373 87147566 87147373 ID=MsG0880047496.01.T01:exon:18004;Parent=MsG0880047496.01.T01
Chr8 exon 87147667 87148072 87147667 ID=MsG0880047496.01.T01:exon:18005;Parent=MsG0880047496.01.T01
Chr8 CDS 87146551 87146648 87146551 ID=MsG0880047496.01.T01:cds;Parent=MsG0880047496.01.T01
Chr8 CDS 87146959 87147265 87146959 ID=MsG0880047496.01.T01:cds;Parent=MsG0880047496.01.T01
Chr8 CDS 87147373 87147566 87147373 ID=MsG0880047496.01.T01:cds;Parent=MsG0880047496.01.T01
Chr8 CDS 87147667 87148072 87147667 ID=MsG0880047496.01.T01:cds;Parent=MsG0880047496.01.T01
Gene Sequence

>MsG0880047496.01.T01

ATGCTTTCCTCGGCAGTTGACTACCGAGGAATTCCTCGGCAGTTAACTGCAGCCGGATTTCAAATTCCTCGGCAGTTAACTGCCGAGGGGGCAAAAGCTTTCAAACACTTCATTGTAGAGATGGCTTCTTCAAATGATTTCAACATGTTAATTCTAATTCCTCTTCTTGTTAGCTCCCTAATGGTAATGAATGCCTTTGCTGCTGGTAACTTGAACCAAGACTTTGATATAACATGGGGAGATGGCCGGGCAAAGATCCTAAACAATGGTGAGTTACTCACTCTATCACTTGACAAAGCATCTGGTTCAGGATTCCAATCAAAGAATGAGTATCTCTTTGGGAAGATTGATATGCAACTCAAACTTGTCCCTGGAAACTCTGCTGGCACTGTCACTGCATATTACCTATCTTCAAAAGGATCAACTTGGGATGAGATAGACTATGAATTTCTAGGAAATGTAAGTGGTGAACCATACATCCTTCACACTAATGTTTTCAGCCAAGGCAAAGGAAATAGGGAACAACAATTCTATCTATGGTTTGACCCAACAGCTGATTTTCACACTTATTCTATCATATGGAACCCCCAGAGGATTATATTCTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAACTCAGAGACTATTGGCGTGCCCTTCCCAAAGAGCCAACCAATGAGAATATATTCAAGTTTGTGGAATGCAGATAACTGGGCAACAAGAGGTGGACTAGTCAAGACAGATTGGACAAAGGCTCCATTCACAGCTTCCTACAGAAATTTTAATGCTCAGGCTTGCATCTGGTCTTCTGGAGCATCATCCTGTGGTTCAACTAGTTCTGCATCAAAGGACTCTGCCAGAGGTTCATGGCTTTCACAGGAGTTGGATGCTACTGGTCAAGGGAGGTTGAAATGGGTGCAGAAGAATTACATGATATACAATTACTGCTCAGATACAAAACGATTTCCACAGGGTTTACCTCCAGAGTGCAACCACTCTTAA

Protein sequence

>MsG0880047496.01.T01

MLSSAVDYRGIPRQLTAAGFQIPRQLTAEGAKAFKHFIVEMASSNDFNMLILIPLLVSSLMVMNAFAAGNLNQDFDITWGDGRAKILNNGELLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSKGSTWDEIDYEFLGNVSGEPYILHTNVFSQGKGNREQQFYLWFDPTADFHTYSIIWNPQRIIFSVDGTPIREFKNSETIGVPFPKSQPMRIYSSLWNADNWATRGGLVKTDWTKAPFTASYRNFNAQACIWSSGASSCGSTSSASKDSARGSWLSQELDATGQGRLKWVQKNYMIYNYCSDTKRFPQGLPPECNHS*