Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028371.01.T01 | XP_013454048.2 | 97.143 | 315 | 9 | 0 | 1 | 315 | 25 | 339 | 0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028371.01.T01 | O82161 | 74.277 | 311 | 72 | 4 | 9 | 315 | 7 | 313 | 7.35E-164 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028371.01.T01 | G7KBB9 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 626 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380015676.01 | MsG0580028371.01 | 0.821429 | 4.056424e-53 | 3.299393e-50 |
| MsG0380015862.01 | MsG0580028371.01 | 0.868495 | 6.257244e-66 | 2.268150e-62 |
| MsG0580027860.01 | MsG0580028371.01 | 0.914236 | 2.429904e-84 | 5.975891e-80 |
| MsG0580027863.01 | MsG0580028371.01 | 0.833908 | 4.070741e-56 | 4.755059e-53 |
| MsG0580027864.01 | MsG0580028371.01 | 0.827307 | 1.682038e-54 | 1.617730e-51 |
| MsG0580027875.01 | MsG0580028371.01 | 0.893188 | 7.928525e-75 | 7.478881e-71 |
| MsG0580027876.01 | MsG0580028371.01 | 0.855453 | 6.247589e-62 | 1.443167e-58 |
| MsG0580028371.01 | MsG0580028377.01 | 0.893424 | 6.369413e-75 | 6.062956e-71 |
| MsG0580028371.01 | MsG0880047496.01 | 0.806804 | 6.886256e-50 | 3.772908e-47 |
| MsG0580028371.01 | MsG0880047554.01 | 0.815889 | 7.333308e-52 | 5.118606e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028371.01.T01 | MTR_5g464340 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 626 |
| MsG0580028371.01.T01 | MTR_5g064340 | 97.143 | 315 | 9 | 0 | 1 | 315 | 1 | 315 | 0.0 | 626 |
| MsG0580028371.01.T01 | MTR_5g064345 | 95.873 | 315 | 13 | 0 | 1 | 315 | 1 | 315 | 0.0 | 617 |
| MsG0580028371.01.T01 | MTR_5g064360 | 94.620 | 316 | 16 | 1 | 1 | 315 | 1 | 316 | 0.0 | 610 |
| MsG0580028371.01.T01 | MTR_3g074860 | 78.912 | 294 | 49 | 3 | 22 | 315 | 24 | 304 | 1.49e-170 | 475 |
| MsG0580028371.01.T01 | MTR_3g074890 | 77.891 | 294 | 52 | 3 | 22 | 315 | 24 | 304 | 4.44e-169 | 471 |
| MsG0580028371.01.T01 | MTR_3g074830 | 72.115 | 312 | 82 | 4 | 8 | 315 | 35 | 345 | 5.93e-156 | 440 |
| MsG0580028371.01.T01 | MTR_4g094240 | 61.754 | 285 | 95 | 3 | 31 | 315 | 30 | 300 | 1.09e-122 | 354 |
| MsG0580028371.01.T01 | MTR_2g009070 | 53.922 | 306 | 125 | 6 | 11 | 315 | 14 | 304 | 1.40e-118 | 343 |
| MsG0580028371.01.T01 | MTR_4g033790 | 35.811 | 296 | 168 | 8 | 16 | 300 | 45 | 329 | 2.09e-47 | 163 |
| MsG0580028371.01.T01 | MTR_1g076470 | 34.967 | 306 | 178 | 7 | 18 | 312 | 46 | 341 | 1.45e-46 | 160 |
| MsG0580028371.01.T01 | MTR_8g071310 | 70.588 | 68 | 20 | 0 | 248 | 315 | 18 | 85 | 4.75e-27 | 102 |
| MsG0580028371.01.T01 | MTR_8g088900 | 75.385 | 65 | 16 | 0 | 251 | 315 | 308 | 372 | 1.46e-25 | 105 |
| MsG0580028371.01.T01 | MTR_4g013230 | 75.385 | 65 | 13 | 1 | 251 | 315 | 79 | 140 | 2.59e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028371.01.T01 | AT4G08950 | 73.579 | 299 | 69 | 6 | 23 | 315 | 20 | 314 | 8.83e-152 | 428 |
| MsG0580028371.01.T01 | AT1G35140 | 64.331 | 314 | 106 | 3 | 1 | 314 | 1 | 308 | 1.90e-144 | 409 |
| MsG0580028371.01.T01 | AT5G64260 | 57.729 | 317 | 120 | 6 | 1 | 315 | 1 | 305 | 2.63e-121 | 350 |
| MsG0580028371.01.T01 | AT5G09440 | 59.489 | 274 | 82 | 7 | 44 | 315 | 32 | 278 | 4.34e-103 | 303 |
| MsG0580028371.01.T01 | AT5G51550 | 35.974 | 303 | 172 | 8 | 21 | 312 | 40 | 331 | 2.12e-48 | 165 |
| MsG0580028371.01.T01 | AT3G02970 | 31.773 | 299 | 168 | 7 | 46 | 313 | 37 | 330 | 4.13e-46 | 159 |
| MsG0580028371.01.T01 | AT2G35150 | 34.877 | 324 | 182 | 11 | 8 | 311 | 2 | 316 | 3.72e-44 | 154 |
| MsG0580028371.01.T01 | AT2G17230 | 33.007 | 306 | 183 | 9 | 19 | 312 | 62 | 357 | 2.42e-42 | 150 |
Find 68 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5:+79292770 | MsG0580028371.01.T01:CDS |
| TTGATGCGAGTTTAAGAATT+TGG | 0.184159 | 5:-79292559 | None:intergenic |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5:-79292818 | None:intergenic |
| TCTTATGGAGCACGCGTAAA+TGG | 0.252501 | 5:+79292677 | MsG0580028371.01.T01:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.253396 | 5:+79292662 | MsG0580028371.01.T01:CDS |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.271186 | 5:-79292917 | None:intergenic |
| CTTGACGAGAATTACTCTTT+AGG | 0.286620 | 5:+79292518 | MsG0580028371.01.T01:CDS |
| TGGTTATGCTGGGGACCTTT+TGG | 0.299405 | 5:+79292982 | MsG0580028371.01.T01:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5:-79292782 | None:intergenic |
| GAAACAAGTTCGCGTACATT+TGG | 0.347338 | 5:+79292705 | MsG0580028371.01.T01:CDS |
| AAATTTCCGTAAACCTCATT+TGG | 0.349271 | 5:+79292306 | MsG0580028371.01.T01:CDS |
| TCCATACCAAATGAGGTTTA+CGG | 0.350588 | 5:-79292312 | None:intergenic |
| GTTAACTGATTTCTTGTTGT+TGG | 0.351760 | 5:-79292468 | None:intergenic |
| GTACTGGTGTTTATGCTAAA+GGG | 0.358568 | 5:+79292951 | MsG0580028371.01.T01:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5:+79292913 | MsG0580028371.01.T01:CDS |
| GGGGCTTATCCTGGTTATGC+TGG | 0.376447 | 5:+79292971 | MsG0580028371.01.T01:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5:-79292770 | None:intergenic |
| GGTATTGAAATTTATGTTGT+TGG | 0.387199 | 5:-79292259 | None:intergenic |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5:+79292821 | MsG0580028371.01.T01:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5:+79293028 | MsG0580028371.01.T01:CDS |
| GCTGCTGATGTGTTAGTTGA+TGG | 0.402313 | 5:+79292620 | MsG0580028371.01.T01:CDS |
| AAACAAGTTCGCGTACATTT+GGG | 0.409022 | 5:+79292706 | MsG0580028371.01.T01:CDS |
| GGAACCGTGACCAATCCTTT+TGG | 0.427628 | 5:+79292875 | MsG0580028371.01.T01:CDS |
| TGTACTGGTGTTTATGCTAA+AGG | 0.430957 | 5:+79292950 | MsG0580028371.01.T01:CDS |
| TCCGTAAACCTCATTTGGTA+TGG | 0.445565 | 5:+79292311 | MsG0580028371.01.T01:CDS |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5:-79292613 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5:-79292890 | None:intergenic |
| ATTTCTTGTTGTTGGTGAGT+TGG | 0.466156 | 5:-79292460 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5:-79292794 | None:intergenic |
| CGGTTAGAAGAGGACCTTTG+TGG | 0.467173 | 5:-79292280 | None:intergenic |
| CACAAAGGTCCTCTTCTAAC+CGG | 0.469717 | 5:+79292281 | MsG0580028371.01.T01:CDS |
| TATGCTAAAGGGGCTTATCC+TGG | 0.476402 | 5:+79292962 | MsG0580028371.01.T01:CDS |
| GGGCTTATCCTGGTTATGCT+GGG | 0.476504 | 5:+79292972 | MsG0580028371.01.T01:CDS |
| ATTCTTAAACTCGCATCAAA+AGG | 0.483182 | 5:+79292563 | MsG0580028371.01.T01:CDS |
| GAAGCCGCTTCAGCTTGTAC+TGG | 0.486507 | 5:+79292935 | MsG0580028371.01.T01:CDS |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5:-79292600 | None:intergenic |
| GAGTACCTAGTGAGAGAGCT+AGG | 0.494212 | 5:-79292490 | None:intergenic |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5:+79292790 | MsG0580028371.01.T01:CDS |
| TACTGGTGTTTATGCTAAAG+GGG | 0.514152 | 5:+79292952 | MsG0580028371.01.T01:CDS |
| ATATCCATTACCAAAAGGAT+TGG | 0.518887 | 5:-79292885 | None:intergenic |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5:-79292806 | None:intergenic |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5:+79293019 | MsG0580028371.01.T01:CDS |
| AACCTCAGCTTGTTCTACAT+TGG | 0.544398 | 5:+79293087 | MsG0580028371.01.T01:CDS |
| AATTCTGAAACTCAATGTGC+TGG | 0.549654 | 5:+79292734 | MsG0580028371.01.T01:CDS |
| GTTATGATCGCTCGTTGAGA+TGG | 0.550978 | 5:-79292344 | None:intergenic |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5:+79292826 | MsG0580028371.01.T01:CDS |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5:+79293032 | MsG0580028371.01.T01:CDS |
| AAGTTCGCGTACATTTGGGT+TGG | 0.562836 | 5:+79292710 | MsG0580028371.01.T01:CDS |
| TCAAGTAGGTGTGGAACCCA+TGG | 0.564282 | 5:+79292650 | MsG0580028371.01.T01:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.566674 | 5:-79292980 | None:intergenic |
| GTTAACCTAGCTCTCTCACT+AGG | 0.568709 | 5:+79292485 | MsG0580028371.01.T01:CDS |
| TACCAATGTAGAACAAGCTG+AGG | 0.574594 | 5:-79293089 | None:intergenic |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5:-79292419 | None:intergenic |
| GGCTTATCCTGGTTATGCTG+GGG | 0.583253 | 5:+79292973 | MsG0580028371.01.T01:CDS |
| AACACCAGTACAAGCTGAAG+CGG | 0.584082 | 5:-79292939 | None:intergenic |
| TGCTCCATAAGAAGAACCAT+GGG | 0.584910 | 5:-79292666 | None:intergenic |
| CAAGCTGAAGCGGCTTCCAA+AGG | 0.586430 | 5:-79292929 | None:intergenic |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5:+79292417 | MsG0580028371.01.T01:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5:-79292778 | None:intergenic |
| GTGCTCCATAAGAAGAACCA+TGG | 0.622936 | 5:-79292667 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5:+79292811 | MsG0580028371.01.T01:CDS |
| ATTACCAAAAGGATTGGTCA+CGG | 0.640683 | 5:-79292879 | None:intergenic |
| TTCGGTTGATTTCCACCACG+TGG | 0.652662 | 5:-79292429 | None:intergenic |
| CATAAATTTCAATACCACAA+AGG | 0.658892 | 5:+79292266 | MsG0580028371.01.T01:CDS |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5:+79292812 | MsG0580028371.01.T01:CDS |
| GGCAACTGATGGTTGTGATG+TGG | 0.667076 | 5:-79292408 | None:intergenic |
| AATGTGCTGGTCAATGCGCA+TGG | 0.681885 | 5:+79292747 | MsG0580028371.01.T01:CDS |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5:+79292414 | MsG0580028371.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATAAATTTCAATACCACAA+AGG | + | Chr5:79292266-79292285 | MsG0580028371.01.T01:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | Chr5:79292893-79292912 | None:intergenic | 25.0% |
| !! | GGTATTGAAATTTATGTTGT+TGG | - | Chr5:79292262-79292281 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | Chr5:79292893-79292912 | MsG0580028371.01.T01:CDS | 25.0% |
| AAATTTCCGTAAACCTCATT+TGG | + | Chr5:79292306-79292325 | MsG0580028371.01.T01:CDS | 30.0% | |
| ATATCCATTACCAAAAGGAT+TGG | - | Chr5:79292888-79292907 | None:intergenic | 30.0% | |
| ATTCTTAAACTCGCATCAAA+AGG | + | Chr5:79292563-79292582 | MsG0580028371.01.T01:CDS | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | Chr5:79293028-79293047 | MsG0580028371.01.T01:CDS | 30.0% | |
| TTGATGCGAGTTTAAGAATT+TGG | - | Chr5:79292562-79292581 | None:intergenic | 30.0% | |
| ! | GTTAACTGATTTCTTGTTGT+TGG | - | Chr5:79292471-79292490 | None:intergenic | 30.0% |
| ! | TGAATTTTCCATACCAAATG+AGG | - | Chr5:79292322-79292341 | None:intergenic | 30.0% |
| !!! | GATGTGGTTGTTTGTTTTTT+AGG | - | Chr5:79292395-79292414 | None:intergenic | 30.0% |
| !!! | GGTGAGTTGGTAATATTTTT+CGG | - | Chr5:79292450-79292469 | None:intergenic | 30.0% |
| !!! | TTGATGGATTTTGTTCAAGT+AGG | + | Chr5:79292636-79292655 | MsG0580028371.01.T01:CDS | 30.0% |
| !!! | TTTTTTAGGAGAAGAAAGTG+AGG | - | Chr5:79292381-79292400 | None:intergenic | 30.0% |
| AAACAAGTTCGCGTACATTT+GGG | + | Chr5:79292706-79292725 | MsG0580028371.01.T01:CDS | 35.0% | |
| CCATTTCACCAACCAATTTA+TGG | + | Chr5:79292770-79292789 | MsG0580028371.01.T01:CDS | 35.0% | |
| CTTGACGAGAATTACTCTTT+AGG | + | Chr5:79292518-79292537 | MsG0580028371.01.T01:CDS | 35.0% | |
| TACTGGTGTTTATGCTAAAG+GGG | + | Chr5:79292952-79292971 | MsG0580028371.01.T01:CDS | 35.0% | |
| TCCATACCAAATGAGGTTTA+CGG | - | Chr5:79292315-79292334 | None:intergenic | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | Chr5:79292781-79292800 | None:intergenic | 35.0% | |
| ! | GAGGTTTACGGAAATTTTAC+CGG | - | Chr5:79292303-79292322 | None:intergenic | 35.0% |
| ! | GTACTGGTGTTTATGCTAAA+GGG | + | Chr5:79292951-79292970 | MsG0580028371.01.T01:CDS | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | Chr5:79292950-79292969 | MsG0580028371.01.T01:CDS | 35.0% |
| !! | AATTCTGAAACTCAATGTGC+TGG | + | Chr5:79292734-79292753 | MsG0580028371.01.T01:CDS | 35.0% |
| !! | ATTACCAAAAGGATTGGTCA+CGG | - | Chr5:79292882-79292901 | None:intergenic | 35.0% |
| !! | ATTTCTTGTTGTTGGTGAGT+TGG | - | Chr5:79292463-79292482 | None:intergenic | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | Chr5:79292773-79292792 | None:intergenic | 35.0% |
| !! | GAAATTTTACCGGTTAGAAG+AGG | - | Chr5:79292293-79292312 | None:intergenic | 35.0% |
| AATAACGATGTGGGTCTTGA+TGG | + | Chr5:79292821-79292840 | MsG0580028371.01.T01:CDS | 40.0% | |
| GAAACAAGTTCGCGTACATT+TGG | + | Chr5:79292705-79292724 | MsG0580028371.01.T01:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | Chr5:79292785-79292804 | None:intergenic | 40.0% | |
| GTTGCACCAAATAACGATGT+GGG | + | Chr5:79292812-79292831 | MsG0580028371.01.T01:CDS | 40.0% | |
| TACCAATGTAGAACAAGCTG+AGG | - | Chr5:79293092-79293111 | None:intergenic | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | Chr5:79292821-79292840 | None:intergenic | 40.0% | |
| TCCGTAAACCTCATTTGGTA+TGG | + | Chr5:79292311-79292330 | MsG0580028371.01.T01:CDS | 40.0% | |
| TGCTCCATAAGAAGAACCAT+GGG | - | Chr5:79292669-79292688 | None:intergenic | 40.0% | |
| ! | AACCTCAGCTTGTTCTACAT+TGG | + | Chr5:79293087-79293106 | MsG0580028371.01.T01:CDS | 40.0% |
| ! | GGATTTTGTTCAAGTAGGTG+TGG | + | Chr5:79292641-79292660 | MsG0580028371.01.T01:CDS | 40.0% |
| ! | GTAGAACAAGCTGAGGTTTT+AGG | - | Chr5:79293085-79293104 | None:intergenic | 40.0% |
| ! | GTGACCAATCCTTTTGGTAA+TGG | + | Chr5:79292881-79292900 | MsG0580028371.01.T01:CDS | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | Chr5:79293032-79293051 | MsG0580028371.01.T01:CDS | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | Chr5:79292998-79293017 | MsG0580028371.01.T01:CDS | 40.0% |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | Chr5:79292809-79292828 | None:intergenic | 40.0% |
| !!! | AATGTCGCTAGTCTTTTAGC+TGG | + | Chr5:79292854-79292873 | MsG0580028371.01.T01:CDS | 40.0% |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | Chr5:79293000-79293019 | None:intergenic | 40.0% |
| AACACCAGTACAAGCTGAAG+CGG | - | Chr5:79292942-79292961 | None:intergenic | 45.0% | |
| AAGTTCGCGTACATTTGGGT+TGG | + | Chr5:79292710-79292729 | MsG0580028371.01.T01:CDS | 45.0% | |
| AGCTGTTAGGACAACGTTGA+TGG | - | Chr5:79292603-79292622 | None:intergenic | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | Chr5:79292913-79292932 | MsG0580028371.01.T01:CDS | 45.0% | |
| CACAAAGGTCCTCTTCTAAC+CGG | + | Chr5:79292281-79292300 | MsG0580028371.01.T01:CDS | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | Chr5:79292616-79292635 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+TGG | + | Chr5:79292620-79292639 | MsG0580028371.01.T01:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | Chr5:79292662-79292681 | MsG0580028371.01.T01:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | Chr5:79293019-79293038 | MsG0580028371.01.T01:CDS | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | Chr5:79292811-79292830 | MsG0580028371.01.T01:CDS | 45.0% | |
| GTGCTCCATAAGAAGAACCA+TGG | - | Chr5:79292670-79292689 | None:intergenic | 45.0% | |
| GTTATGATCGCTCGTTGAGA+TGG | - | Chr5:79292347-79292366 | None:intergenic | 45.0% | |
| TATGCTAAAGGGGCTTATCC+TGG | + | Chr5:79292962-79292981 | MsG0580028371.01.T01:CDS | 45.0% | |
| TCTTATGGAGCACGCGTAAA+TGG | + | Chr5:79292677-79292696 | MsG0580028371.01.T01:CDS | 45.0% | |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | Chr5:79292920-79292939 | None:intergenic | 45.0% |
| ! | GTTAACCTAGCTCTCTCACT+AGG | + | Chr5:79292485-79292504 | MsG0580028371.01.T01:CDS | 45.0% |
| !!! | GTTTTAGGATCAGCAATCGC+AGG | - | Chr5:79293070-79293089 | None:intergenic | 45.0% |
| AAAAGGTCCCCAGCATAACC+AGG | - | Chr5:79292983-79293002 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | Chr5:79292826-79292845 | MsG0580028371.01.T01:CDS | 50.0% | |
| CGGTTAGAAGAGGACCTTTG+TGG | - | Chr5:79292283-79292302 | None:intergenic | 50.0% | |
| GAGTACCTAGTGAGAGAGCT+AGG | - | Chr5:79292493-79292512 | None:intergenic | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | Chr5:79292797-79292816 | None:intergenic | 50.0% | |
| GGCAACTGATGGTTGTGATG+TGG | - | Chr5:79292411-79292430 | None:intergenic | 50.0% | |
| GGCTTATCCTGGTTATGCTG+GGG | + | Chr5:79292973-79292992 | MsG0580028371.01.T01:CDS | 50.0% | |
| GGGCTTATCCTGGTTATGCT+GGG | + | Chr5:79292972-79292991 | MsG0580028371.01.T01:CDS | 50.0% | |
| TCAAGTAGGTGTGGAACCCA+TGG | + | Chr5:79292650-79292669 | MsG0580028371.01.T01:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | Chr5:79292790-79292809 | MsG0580028371.01.T01:CDS | 50.0% | |
| ! | AATGTGCTGGTCAATGCGCA+TGG | + | Chr5:79292747-79292766 | MsG0580028371.01.T01:CDS | 50.0% |
| ! | GGAACCGTGACCAATCCTTT+TGG | + | Chr5:79292875-79292894 | MsG0580028371.01.T01:CDS | 50.0% |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | Chr5:79292982-79293001 | MsG0580028371.01.T01:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | Chr5:79292985-79293004 | MsG0580028371.01.T01:CDS | 50.0% |
| ! | TTCGGTTGATTTCCACCACG+TGG | - | Chr5:79292432-79292451 | None:intergenic | 50.0% |
| AACCATCAGTTGCCACGTGG+TGG | + | Chr5:79292417-79292436 | MsG0580028371.01.T01:CDS | 55.0% | |
| CAAGCTGAAGCGGCTTCCAA+AGG | - | Chr5:79292932-79292951 | None:intergenic | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | Chr5:79292414-79292433 | MsG0580028371.01.T01:CDS | 55.0% | |
| GAAGCCGCTTCAGCTTGTAC+TGG | + | Chr5:79292935-79292954 | MsG0580028371.01.T01:CDS | 55.0% | |
| GGGGCTTATCCTGGTTATGC+TGG | + | Chr5:79292971-79292990 | MsG0580028371.01.T01:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | Chr5:79292422-79292441 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 79292167 | 79293114 | 79292167 | ID=MsG0580028371.01;Name=MsG0580028371.01 |
| Chr5 | mRNA | 79292167 | 79293114 | 79292167 | ID=MsG0580028371.01.T01;Parent=MsG0580028371.01;Name=MsG0580028371.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|315 |
| Chr5 | exon | 79292167 | 79293114 | 79292167 | ID=MsG0580028371.01.T01:exon:46768;Parent=MsG0580028371.01.T01 |
| Chr5 | CDS | 79292167 | 79293114 | 79292167 | ID=MsG0580028371.01.T01:cds;Parent=MsG0580028371.01.T01 |
| Gene Sequence |
| Protein sequence |
