Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028377.01.T01 | XP_003615144.1 | 96.203 | 316 | 12 | 0 | 1 | 316 | 1 | 316 | 0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028377.01.T01 | O82161 | 74.038 | 312 | 72 | 4 | 9 | 316 | 7 | 313 | 2.39E-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028377.01.T01 | G7KBC1 | 96.203 | 316 | 12 | 0 | 1 | 316 | 1 | 316 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380015676.01 | MsG0580028377.01 | 0.823886 | 1.087667e-53 | 9.485168e-51 |
| MsG0380015862.01 | MsG0580028377.01 | 0.855382 | 6.551178e-62 | 1.509826e-58 |
| MsG0580027860.01 | MsG0580028377.01 | 0.828750 | 7.556414e-55 | 7.578559e-52 |
| MsG0580027864.01 | MsG0580028377.01 | 0.816699 | 4.832641e-52 | 3.448797e-49 |
| MsG0580027875.01 | MsG0580028377.01 | 0.867724 | 1.107770e-65 | 3.906771e-62 |
| MsG0580028371.01 | MsG0580028377.01 | 0.893424 | 6.369413e-75 | 6.062956e-71 |
| MsG0580028377.01 | MsG0880047496.01 | 0.822074 | 2.877067e-53 | 2.383088e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028377.01.T01 | MTR_5g064360 | 96.203 | 316 | 12 | 0 | 1 | 316 | 1 | 316 | 0.0 | 625 |
| MsG0580028377.01.T01 | MTR_5g064345 | 93.987 | 316 | 18 | 1 | 1 | 316 | 1 | 315 | 0.0 | 607 |
| MsG0580028377.01.T01 | MTR_5g464340 | 93.038 | 316 | 21 | 1 | 1 | 316 | 1 | 315 | 0.0 | 601 |
| MsG0580028377.01.T01 | MTR_5g064340 | 93.038 | 316 | 21 | 1 | 1 | 316 | 1 | 315 | 0.0 | 601 |
| MsG0580028377.01.T01 | MTR_3g074860 | 79.798 | 297 | 47 | 3 | 20 | 316 | 21 | 304 | 6.12e-173 | 481 |
| MsG0580028377.01.T01 | MTR_3g074890 | 78.788 | 297 | 50 | 3 | 20 | 316 | 21 | 304 | 1.47e-171 | 478 |
| MsG0580028377.01.T01 | MTR_3g074830 | 71.704 | 311 | 84 | 3 | 9 | 316 | 36 | 345 | 5.29e-156 | 440 |
| MsG0580028377.01.T01 | MTR_4g094240 | 61.404 | 285 | 96 | 3 | 32 | 316 | 30 | 300 | 1.41e-122 | 353 |
| MsG0580028377.01.T01 | MTR_2g009070 | 53.459 | 318 | 131 | 7 | 1 | 316 | 2 | 304 | 4.46e-119 | 345 |
| MsG0580028377.01.T01 | MTR_1g076470 | 35.179 | 307 | 178 | 7 | 6 | 301 | 33 | 329 | 4.02e-46 | 159 |
| MsG0580028377.01.T01 | MTR_4g033790 | 36.111 | 288 | 162 | 8 | 25 | 301 | 53 | 329 | 5.40e-46 | 159 |
| MsG0580028377.01.T01 | MTR_8g071310 | 70.588 | 68 | 20 | 0 | 249 | 316 | 18 | 85 | 8.46e-27 | 101 |
| MsG0580028377.01.T01 | MTR_4g013230 | 75.385 | 65 | 13 | 1 | 252 | 316 | 79 | 140 | 1.92e-25 | 99.4 |
| MsG0580028377.01.T01 | MTR_8g088900 | 75.385 | 65 | 16 | 0 | 252 | 316 | 308 | 372 | 3.21e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028377.01.T01 | AT4G08950 | 72.241 | 299 | 73 | 6 | 24 | 316 | 20 | 314 | 2.75e-149 | 422 |
| MsG0580028377.01.T01 | AT1G35140 | 65.397 | 315 | 102 | 3 | 1 | 315 | 1 | 308 | 2.01e-144 | 409 |
| MsG0580028377.01.T01 | AT5G64260 | 57.792 | 308 | 120 | 4 | 10 | 316 | 7 | 305 | 2.66e-122 | 353 |
| MsG0580028377.01.T01 | AT5G09440 | 55.814 | 301 | 99 | 7 | 18 | 316 | 10 | 278 | 4.69e-103 | 303 |
| MsG0580028377.01.T01 | AT5G51550 | 35.738 | 305 | 174 | 8 | 20 | 313 | 38 | 331 | 8.74e-49 | 166 |
| MsG0580028377.01.T01 | AT3G02970 | 31.667 | 300 | 167 | 7 | 47 | 314 | 37 | 330 | 2.42e-45 | 157 |
| MsG0580028377.01.T01 | AT2G35150 | 34.154 | 325 | 187 | 11 | 6 | 312 | 1 | 316 | 1.28e-42 | 150 |
| MsG0580028377.01.T01 | AT2G17230 | 32.237 | 304 | 184 | 9 | 22 | 313 | 64 | 357 | 3.01e-40 | 144 |
Find 71 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCAACCAATTTA+TGG | 0.182864 | 5:+79389140 | MsG0580028377.01.T01:CDS |
| TCAAGACCCACATCGTTATT+TGG | 0.213136 | 5:-79389188 | None:intergenic |
| TCTTATGGTGCACGCGTAAA+TGG | 0.225421 | 5:+79389047 | MsG0580028377.01.T01:CDS |
| AATCAGTTATGATGACTCTT+TGG | 0.275197 | 5:-79388719 | None:intergenic |
| GAAACAAATTTGCGTACATT+TGG | 0.281754 | 5:+79389075 | MsG0580028377.01.T01:CDS |
| GGAACCCATGGTTCTTCTTA+TGG | 0.283880 | 5:+79389032 | MsG0580028377.01.T01:CDS |
| CTCGATGAGAATTACTCTTT+AGG | 0.297921 | 5:+79388888 | MsG0580028377.01.T01:CDS |
| TGGTTATGCTGGGGACCTTT+TGG | 0.299405 | 5:+79389352 | MsG0580028377.01.T01:CDS |
| GCACTTTGTGGACCATAAAT+TGG | 0.307975 | 5:-79389152 | None:intergenic |
| GCTTCCAAAGGAGCTTCTTT+TGG | 0.308698 | 5:-79389287 | None:intergenic |
| TTGATGCGAGTTTAAGGATT+TGG | 0.323024 | 5:-79388929 | None:intergenic |
| AAACAAATTTGCGTACATTT+GGG | 0.353432 | 5:+79389076 | MsG0580028377.01.T01:CDS |
| AGGACCAAAAGAAGCTCCTT+TGG | 0.376105 | 5:+79389283 | MsG0580028377.01.T01:CDS |
| GGGGCTTATCCTGGTTATGC+TGG | 0.376447 | 5:+79389341 | MsG0580028377.01.T01:CDS |
| CCATAAATTGGTTGGTGAAA+TGG | 0.381983 | 5:-79389140 | None:intergenic |
| AAATCTCAATCAACCTCATT+TGG | 0.382865 | 5:+79388676 | MsG0580028377.01.T01:CDS |
| AATAACGATGTGGGTCTTGA+TGG | 0.390121 | 5:+79389191 | MsG0580028377.01.T01:CDS |
| TATAACGCAAATGGTGATAA+TGG | 0.393265 | 5:+79389398 | MsG0580028377.01.T01:CDS |
| ATCAGTTATGATGACTCTTT+GGG | 0.405878 | 5:-79388718 | None:intergenic |
| GTACTGGTGTTTATGCTAAA+GGG | 0.410841 | 5:+79389321 | MsG0580028377.01.T01:CDS |
| CAGTGAGAAGAGGGCCTTTG+TGG | 0.411734 | 5:-79388650 | None:intergenic |
| GGTATTGAAATTTAAGTTGT+TGG | 0.450783 | 5:-79388629 | None:intergenic |
| CTAACACATCAGCAGCTGTT+AGG | 0.451358 | 5:-79388983 | None:intergenic |
| GGAACCGTAACGAATCCTTT+TGG | 0.451430 | 5:+79389245 | MsG0580028377.01.T01:CDS |
| TTTAAGTTGTTGGTCCGATT+CGG | 0.453958 | 5:-79388619 | None:intergenic |
| TGAAAATATCCATTACCAAA+AGG | 0.461381 | 5:-79389260 | None:intergenic |
| GCAACCAATGGTGCACTTTG+TGG | 0.466845 | 5:-79389164 | None:intergenic |
| ATCCTTAAACTCGCATCAAA+AGG | 0.475704 | 5:+79388933 | MsG0580028377.01.T01:CDS |
| TATGCTAAAGGGGCTTATCC+TGG | 0.476402 | 5:+79389332 | MsG0580028377.01.T01:CDS |
| GGGCTTATCCTGGTTATGCT+GGG | 0.476504 | 5:+79389342 | MsG0580028377.01.T01:CDS |
| TGTACTGGTGTTTATGCTAA+AGG | 0.478106 | 5:+79389320 | MsG0580028377.01.T01:CDS |
| AAATTTGCGTACATTTGGGT+TGG | 0.481339 | 5:+79389080 | MsG0580028377.01.T01:CDS |
| GAAGCTGCTTCAGCATGTAC+TGG | 0.487766 | 5:+79389305 | MsG0580028377.01.T01:CDS |
| AGCTGTTAGGACAACGTTGA+TGG | 0.491013 | 5:-79388970 | None:intergenic |
| TCAATCAACCTCATTTGGTA+TGG | 0.491730 | 5:+79388681 | MsG0580028377.01.T01:CDS |
| GACGTGGTTGTTCCTCGTTT+AGG | 0.494909 | 5:-79388762 | None:intergenic |
| TGCAAGAAAACTCACCGAAT+CGG | 0.499245 | 5:+79388605 | MsG0580028377.01.T01:CDS |
| TGGTCCACAAAGTGCACCAT+TGG | 0.507521 | 5:+79389160 | MsG0580028377.01.T01:CDS |
| GCTGCTGATGTGTTAGTTGA+CGG | 0.512705 | 5:+79388990 | MsG0580028377.01.T01:CDS |
| TCGTTATTTGGTGCAACCAA+TGG | 0.521248 | 5:-79389176 | None:intergenic |
| GGTGCTAGCTATAACGCAAA+TGG | 0.528973 | 5:+79389389 | MsG0580028377.01.T01:CDS |
| TCTAGTAGGTGTGGAACCCA+TGG | 0.532421 | 5:+79389020 | MsG0580028377.01.T01:CDS |
| TCCTCGTTTAGGAGAAGAGA+GGG | 0.533776 | 5:-79388751 | None:intergenic |
| ATTACCAAAAGGATTCGTTA+CGG | 0.540975 | 5:-79389249 | None:intergenic |
| GCTAAACTAGCTCTCTCACT+AGG | 0.543046 | 5:+79388855 | MsG0580028377.01.T01:CDS |
| CACAAAGGCCCTCTTCTCAC+TGG | 0.547348 | 5:+79388651 | MsG0580028377.01.T01:CDS |
| CGATGTGGGTCTTGATGGAA+TGG | 0.552866 | 5:+79389196 | MsG0580028377.01.T01:CDS |
| ACGCAAATGGTGATAATGGA+AGG | 0.560708 | 5:+79389402 | MsG0580028377.01.T01:CDS |
| TACTGGTGTTTATGCTAAAG+GGG | 0.565761 | 5:+79389322 | MsG0580028377.01.T01:CDS |
| AAAAGGTCCCCAGCATAACC+AGG | 0.566674 | 5:-79389350 | None:intergenic |
| AACCTCAGTTTGTTCTACGT+TGG | 0.574270 | 5:+79389457 | MsG0580028377.01.T01:CDS |
| TTCCACCACGTGGCAACTGA+TGG | 0.582258 | 5:-79388789 | None:intergenic |
| GGCTTATCCTGGTTATGCTG+GGG | 0.583253 | 5:+79389343 | MsG0580028377.01.T01:CDS |
| AACCATCAGTTGCCACGTGG+TGG | 0.610757 | 5:+79388787 | MsG0580028377.01.T01:CDS |
| TTTGTGGACCATAAATTGGT+TGG | 0.611426 | 5:-79389148 | None:intergenic |
| CTTAAATTTCAATACCACAA+AGG | 0.623830 | 5:+79388636 | MsG0580028377.01.T01:CDS |
| GTGCACCATAAGAAGAACCA+TGG | 0.625761 | 5:-79389037 | None:intergenic |
| GGTTGCACCAAATAACGATG+TGG | 0.628110 | 5:+79389181 | MsG0580028377.01.T01:CDS |
| TTCCTCGTTTAGGAGAAGAG+AGG | 0.628736 | 5:-79388752 | None:intergenic |
| GTTATGATGACTCTTTGGGA+CGG | 0.628949 | 5:-79388714 | None:intergenic |
| CATGCTGAAGCAGCTTCCAA+AGG | 0.633514 | 5:-79389299 | None:intergenic |
| TCGTTTAGGAGAAGAGAGGG+AGG | 0.643573 | 5:-79388748 | None:intergenic |
| TTCAGTTGATTTCCACCACG+TGG | 0.645033 | 5:-79388799 | None:intergenic |
| TACCAACGTAGAACAAACTG+AGG | 0.649916 | 5:-79389459 | None:intergenic |
| AATTCAGAGACACAATGTGA+TGG | 0.655422 | 5:+79389104 | MsG0580028377.01.T01:CDS |
| TGCACCATAAGAAGAACCAT+GGG | 0.655555 | 5:-79389036 | None:intergenic |
| GTTGCACCAAATAACGATGT+GGG | 0.661869 | 5:+79389182 | MsG0580028377.01.T01:CDS |
| GGCAACTGATGGTTGTGACG+TGG | 0.693973 | 5:-79388778 | None:intergenic |
| CACAACCATCAGTTGCCACG+TGG | 0.702852 | 5:+79388784 | MsG0580028377.01.T01:CDS |
| TCCCTCTCTTCTCCTAAACG+AGG | 0.714038 | 5:+79388750 | MsG0580028377.01.T01:CDS |
| AATGTGATGGTCAATGCGCG+TGG | 0.746675 | 5:+79389117 | MsG0580028377.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAACAAATTTGCGTACATTT+GGG | + | Chr5:79389076-79389095 | MsG0580028377.01.T01:CDS | 25.0% |
| ! | CTTAAATTTCAATACCACAA+AGG | + | Chr5:79388636-79388655 | MsG0580028377.01.T01:CDS | 25.0% |
| ! | TGAAAATATCCATTACCAAA+AGG | - | Chr5:79389263-79389282 | None:intergenic | 25.0% |
| !!! | GGTATTGAAATTTAAGTTGT+TGG | - | Chr5:79388632-79388651 | None:intergenic | 25.0% |
| !!! | TTTAGCTGACTTTTTATTGT+TGG | - | Chr5:79388841-79388860 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGGATATTTTCA+AGG | + | Chr5:79389263-79389282 | MsG0580028377.01.T01:CDS | 25.0% |
| AAATCTCAATCAACCTCATT+TGG | + | Chr5:79388676-79388695 | MsG0580028377.01.T01:CDS | 30.0% | |
| AATCAGTTATGATGACTCTT+TGG | - | Chr5:79388722-79388741 | None:intergenic | 30.0% | |
| ATCAGTTATGATGACTCTTT+GGG | - | Chr5:79388721-79388740 | None:intergenic | 30.0% | |
| ATTACCAAAAGGATTCGTTA+CGG | - | Chr5:79389252-79389271 | None:intergenic | 30.0% | |
| GAAACAAATTTGCGTACATT+TGG | + | Chr5:79389075-79389094 | MsG0580028377.01.T01:CDS | 30.0% | |
| TATAACGCAAATGGTGATAA+TGG | + | Chr5:79389398-79389417 | MsG0580028377.01.T01:CDS | 30.0% | |
| ! | TGAATTTTCCATACCAAATG+AGG | - | Chr5:79388692-79388711 | None:intergenic | 30.0% |
| !! | ACTTTTTATTGTTGGTGAGT+TGG | - | Chr5:79388833-79388852 | None:intergenic | 30.0% |
| AAATTTGCGTACATTTGGGT+TGG | + | Chr5:79389080-79389099 | MsG0580028377.01.T01:CDS | 35.0% | |
| AATTCAGAGACACAATGTGA+TGG | + | Chr5:79389104-79389123 | MsG0580028377.01.T01:CDS | 35.0% | |
| ATCCTTAAACTCGCATCAAA+AGG | + | Chr5:79388933-79388952 | MsG0580028377.01.T01:CDS | 35.0% | |
| CCATTTCACCAACCAATTTA+TGG | + | Chr5:79389140-79389159 | MsG0580028377.01.T01:CDS | 35.0% | |
| CTCGATGAGAATTACTCTTT+AGG | + | Chr5:79388888-79388907 | MsG0580028377.01.T01:CDS | 35.0% | |
| TACTGGTGTTTATGCTAAAG+GGG | + | Chr5:79389322-79389341 | MsG0580028377.01.T01:CDS | 35.0% | |
| TCAATCAACCTCATTTGGTA+TGG | + | Chr5:79388681-79388700 | MsG0580028377.01.T01:CDS | 35.0% | |
| TTGATGCGAGTTTAAGGATT+TGG | - | Chr5:79388932-79388951 | None:intergenic | 35.0% | |
| TTTGTGGACCATAAATTGGT+TGG | - | Chr5:79389151-79389170 | None:intergenic | 35.0% | |
| ! | GTAACGAATCCTTTTGGTAA+TGG | + | Chr5:79389251-79389270 | MsG0580028377.01.T01:CDS | 35.0% |
| ! | GTACTGGTGTTTATGCTAAA+GGG | + | Chr5:79389321-79389340 | MsG0580028377.01.T01:CDS | 35.0% |
| ! | GTAGAACAAACTGAGGTTTT+AGG | - | Chr5:79389455-79389474 | None:intergenic | 35.0% |
| ! | TGTACTGGTGTTTATGCTAA+AGG | + | Chr5:79389320-79389339 | MsG0580028377.01.T01:CDS | 35.0% |
| ! | TTGACGGTTTTTGTTCTAGT+AGG | + | Chr5:79389006-79389025 | MsG0580028377.01.T01:CDS | 35.0% |
| !! | CCATAAATTGGTTGGTGAAA+TGG | - | Chr5:79389143-79389162 | None:intergenic | 35.0% |
| !! | TTTAAGTTGTTGGTCCGATT+CGG | - | Chr5:79388622-79388641 | None:intergenic | 35.0% |
| !!! | AATGTTGCTAGTCTTTTAGC+TGG | + | Chr5:79389224-79389243 | MsG0580028377.01.T01:CDS | 35.0% |
| AATAACGATGTGGGTCTTGA+TGG | + | Chr5:79389191-79389210 | MsG0580028377.01.T01:CDS | 40.0% | |
| GCACTTTGTGGACCATAAAT+TGG | - | Chr5:79389155-79389174 | None:intergenic | 40.0% | |
| GTTGCACCAAATAACGATGT+GGG | + | Chr5:79389182-79389201 | MsG0580028377.01.T01:CDS | 40.0% | |
| TACCAACGTAGAACAAACTG+AGG | - | Chr5:79389462-79389481 | None:intergenic | 40.0% | |
| TCAAGACCCACATCGTTATT+TGG | - | Chr5:79389191-79389210 | None:intergenic | 40.0% | |
| TGCAAGAAAACTCACCGAAT+CGG | + | Chr5:79388605-79388624 | MsG0580028377.01.T01:CDS | 40.0% | |
| TGCACCATAAGAAGAACCAT+GGG | - | Chr5:79389039-79389058 | None:intergenic | 40.0% | |
| ! | AACCTCAGTTTGTTCTACGT+TGG | + | Chr5:79389457-79389476 | MsG0580028377.01.T01:CDS | 40.0% |
| ! | AGATTTTGCCAGTGAGAAGA+GGG | - | Chr5:79388662-79388681 | None:intergenic | 40.0% |
| ! | GGTTTTTGTTCTAGTAGGTG+TGG | + | Chr5:79389011-79389030 | MsG0580028377.01.T01:CDS | 40.0% |
| ! | GTCCTTTTGATGCGAGTTTA+AGG | - | Chr5:79388938-79388957 | None:intergenic | 40.0% |
| ! | GTTATGATGACTCTTTGGGA+CGG | - | Chr5:79388717-79388736 | None:intergenic | 40.0% |
| !! | ACGCAAATGGTGATAATGGA+AGG | + | Chr5:79389402-79389421 | MsG0580028377.01.T01:CDS | 40.0% |
| !! | CTTTTGGTGGACAAAACAAG+TGG | + | Chr5:79389368-79389387 | MsG0580028377.01.T01:CDS | 40.0% |
| !! | TCGTTATTTGGTGCAACCAA+TGG | - | Chr5:79389179-79389198 | None:intergenic | 40.0% |
| !!! | CACTTGTTTTGTCCACCAAA+AGG | - | Chr5:79389370-79389389 | None:intergenic | 40.0% |
| !!! | GTTTTAGGATCAACAATCGC+AGG | - | Chr5:79389440-79389459 | None:intergenic | 40.0% |
| AGCTGTTAGGACAACGTTGA+TGG | - | Chr5:79388973-79388992 | None:intergenic | 45.0% | |
| AGGACCAAAAGAAGCTCCTT+TGG | + | Chr5:79389283-79389302 | MsG0580028377.01.T01:CDS | 45.0% | |
| CTAACACATCAGCAGCTGTT+AGG | - | Chr5:79388986-79389005 | None:intergenic | 45.0% | |
| GCTGCTGATGTGTTAGTTGA+CGG | + | Chr5:79388990-79389009 | MsG0580028377.01.T01:CDS | 45.0% | |
| GGAACCCATGGTTCTTCTTA+TGG | + | Chr5:79389032-79389051 | MsG0580028377.01.T01:CDS | 45.0% | |
| GGTGCTAGCTATAACGCAAA+TGG | + | Chr5:79389389-79389408 | MsG0580028377.01.T01:CDS | 45.0% | |
| GGTTGCACCAAATAACGATG+TGG | + | Chr5:79389181-79389200 | MsG0580028377.01.T01:CDS | 45.0% | |
| GTGCACCATAAGAAGAACCA+TGG | - | Chr5:79389040-79389059 | None:intergenic | 45.0% | |
| TATGCTAAAGGGGCTTATCC+TGG | + | Chr5:79389332-79389351 | MsG0580028377.01.T01:CDS | 45.0% | |
| TCCTCGTTTAGGAGAAGAGA+GGG | - | Chr5:79388754-79388773 | None:intergenic | 45.0% | |
| TCTTATGGTGCACGCGTAAA+TGG | + | Chr5:79389047-79389066 | MsG0580028377.01.T01:CDS | 45.0% | |
| TTCCTCGTTTAGGAGAAGAG+AGG | - | Chr5:79388755-79388774 | None:intergenic | 45.0% | |
| ! | GAGATTTTGCCAGTGAGAAG+AGG | - | Chr5:79388663-79388682 | None:intergenic | 45.0% |
| ! | GCTAAACTAGCTCTCTCACT+AGG | + | Chr5:79388855-79388874 | MsG0580028377.01.T01:CDS | 45.0% |
| ! | GCTTCCAAAGGAGCTTCTTT+TGG | - | Chr5:79389290-79389309 | None:intergenic | 45.0% |
| ! | GGAACCGTAACGAATCCTTT+TGG | + | Chr5:79389245-79389264 | MsG0580028377.01.T01:CDS | 45.0% |
| ! | TTCAGTTGATTTCCACCACG+TGG | - | Chr5:79388802-79388821 | None:intergenic | 45.0% |
| AAAAGGTCCCCAGCATAACC+AGG | - | Chr5:79389353-79389372 | None:intergenic | 50.0% | |
| AATGTGATGGTCAATGCGCG+TGG | + | Chr5:79389117-79389136 | MsG0580028377.01.T01:CDS | 50.0% | |
| CATGCTGAAGCAGCTTCCAA+AGG | - | Chr5:79389302-79389321 | None:intergenic | 50.0% | |
| CGATGTGGGTCTTGATGGAA+TGG | + | Chr5:79389196-79389215 | MsG0580028377.01.T01:CDS | 50.0% | |
| GAAGCTGCTTCAGCATGTAC+TGG | + | Chr5:79389305-79389324 | MsG0580028377.01.T01:CDS | 50.0% | |
| GACGTGGTTGTTCCTCGTTT+AGG | - | Chr5:79388765-79388784 | None:intergenic | 50.0% | |
| GCAACCAATGGTGCACTTTG+TGG | - | Chr5:79389167-79389186 | None:intergenic | 50.0% | |
| GGCTTATCCTGGTTATGCTG+GGG | + | Chr5:79389343-79389362 | MsG0580028377.01.T01:CDS | 50.0% | |
| GGGCTTATCCTGGTTATGCT+GGG | + | Chr5:79389342-79389361 | MsG0580028377.01.T01:CDS | 50.0% | |
| TCCCTCTCTTCTCCTAAACG+AGG | + | Chr5:79388750-79388769 | MsG0580028377.01.T01:CDS | 50.0% | |
| TCGTTTAGGAGAAGAGAGGG+AGG | - | Chr5:79388751-79388770 | None:intergenic | 50.0% | |
| TCTAGTAGGTGTGGAACCCA+TGG | + | Chr5:79389020-79389039 | MsG0580028377.01.T01:CDS | 50.0% | |
| TGGTCCACAAAGTGCACCAT+TGG | + | Chr5:79389160-79389179 | MsG0580028377.01.T01:CDS | 50.0% | |
| ! | TGGTTATGCTGGGGACCTTT+TGG | + | Chr5:79389352-79389371 | MsG0580028377.01.T01:CDS | 50.0% |
| ! | TTATGCTGGGGACCTTTTGG+TGG | + | Chr5:79389355-79389374 | MsG0580028377.01.T01:CDS | 50.0% |
| AACCATCAGTTGCCACGTGG+TGG | + | Chr5:79388787-79388806 | MsG0580028377.01.T01:CDS | 55.0% | |
| CACAAAGGCCCTCTTCTCAC+TGG | + | Chr5:79388651-79388670 | MsG0580028377.01.T01:CDS | 55.0% | |
| CACAACCATCAGTTGCCACG+TGG | + | Chr5:79388784-79388803 | MsG0580028377.01.T01:CDS | 55.0% | |
| CAGTGAGAAGAGGGCCTTTG+TGG | - | Chr5:79388653-79388672 | None:intergenic | 55.0% | |
| GGCAACTGATGGTTGTGACG+TGG | - | Chr5:79388781-79388800 | None:intergenic | 55.0% | |
| GGGGCTTATCCTGGTTATGC+TGG | + | Chr5:79389341-79389360 | MsG0580028377.01.T01:CDS | 55.0% | |
| TTCCACCACGTGGCAACTGA+TGG | - | Chr5:79388792-79388811 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 79388534 | 79389484 | 79388534 | ID=MsG0580028377.01;Name=MsG0580028377.01 |
| Chr5 | mRNA | 79388534 | 79389484 | 79388534 | ID=MsG0580028377.01.T01;Parent=MsG0580028377.01;Name=MsG0580028377.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|316 |
| Chr5 | exon | 79388534 | 79389484 | 79388534 | ID=MsG0580028377.01.T01:exon:46789;Parent=MsG0580028377.01.T01 |
| Chr5 | CDS | 79388534 | 79389484 | 79388534 | ID=MsG0580028377.01.T01:cds;Parent=MsG0580028377.01.T01 |
| Gene Sequence |
| Protein sequence |
