AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047636.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047636.01.T01 MTR_4g119422 49.189 370 143 8 7 336 3 367 1.53e-99 299
MsG0880047636.01.T01 MTR_4g131910 79.348 184 29 1 138 312 59 242 1.10e-92 277
MsG0880047636.01.T01 MTR_4g131910 89.157 83 8 1 1 83 1 82 7.03e-45 154
MsG0880047636.01.T01 MTR_4g119490 59.563 183 74 0 3 185 1 183 4.74e-63 200
MsG0880047636.01.T01 MTR_4g119450 54.144 181 83 0 3 183 1 181 5.96e-58 187
MsG0880047636.01.T01 MTR_4g119413 51.648 182 88 0 1 182 3 184 1.55e-57 197
MsG0880047636.01.T01 MTR_2g437390 52.198 182 87 0 1 182 1 182 3.18e-57 198
MsG0880047636.01.T01 MTR_4g119413 51.648 182 88 0 1 182 3 184 4.10e-57 197
MsG0880047636.01.T01 MTR_4g119930 54.645 183 80 1 4 186 6 185 3.68e-56 182
MsG0880047636.01.T01 MTR_4g119930 54.545 154 67 1 4 157 6 156 4.37e-46 155
MsG0880047636.01.T01 MTR_7g108340 45.251 179 98 0 4 182 3 181 1.43e-45 166
MsG0880047636.01.T01 MTR_4g119930 56.204 137 60 0 50 186 1 137 3.76e-41 142
MsG0880047636.01.T01 MTR_3g115680 38.953 172 91 4 16 183 18 179 9.78e-29 110
MsG0880047636.01.T01 MTR_4g131905 46.535 101 42 4 45 145 57 145 4.70e-18 80.1
MsG0880047636.01.T01 MTR_7g021400 39.130 138 74 2 203 334 5 138 2.47e-17 78.6
MsG0880047636.01.T01 MTR_5g022730 36.806 144 69 3 203 334 4 137 3.46e-17 78.2
MsG0880047636.01.T01 MTR_7g094150 39.130 138 74 2 203 334 5 138 3.77e-17 78.2
MsG0880047636.01.T01 MTR_5g022710 36.111 144 70 3 203 334 4 137 8.61e-17 77.0
MsG0880047636.01.T01 MTR_4g033455 33.557 149 83 3 203 339 9 153 9.29e-17 77.0
MsG0880047636.01.T01 MTR_4g032510 36.496 137 74 2 203 334 6 134 2.25e-16 75.9
MsG0880047636.01.T01 MTR_5g085030 34.783 138 81 2 203 334 4 138 3.32e-16 75.5
MsG0880047636.01.T01 MTR_4g032460 35.606 132 82 1 203 334 4 132 7.24e-16 74.3
MsG0880047636.01.T01 MTR_7g094170 37.681 138 76 2 203 334 5 138 9.10e-16 74.3
MsG0880047636.01.T01 MTR_4g032500 40.000 130 67 3 204 329 7 129 9.93e-16 73.9
MsG0880047636.01.T01 MTR_4g033460 33.333 138 82 2 203 334 9 142 2.84e-15 75.1
MsG0880047636.01.T01 MTR_4g032400 35.338 133 77 2 203 329 11 140 6.74e-15 72.0
MsG0880047636.01.T01 MTR_3g110048 35.000 140 79 2 203 334 5 140 1.11e-14 71.2
MsG0880047636.01.T01 MTR_7g094280 35.616 146 71 4 204 336 7 142 3.68e-14 69.7
MsG0880047636.01.T01 MTR_7g094120 35.211 142 76 4 203 334 6 141 4.85e-14 69.3
MsG0880047636.01.T01 MTR_8g056060 35.862 145 70 3 203 334 5 139 6.43e-14 68.9
MsG0880047636.01.T01 MTR_7g021380 36.232 138 78 2 203 334 5 138 2.52e-13 67.4
MsG0880047636.01.T01 MTR_8g468480 33.333 135 77 3 203 329 4 133 3.02e-13 67.4
MsG0880047636.01.T01 MTR_4g032450 36.522 115 63 2 200 308 20 130 3.71e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047636.01.T01 AT4G02570 50.838 179 88 0 4 182 3 181 7.80e-54 189
MsG0880047636.01.T01 AT4G02570 50.838 179 88 0 4 182 3 181 7.80e-54 189
MsG0880047636.01.T01 AT4G02570 50.838 179 88 0 4 182 3 181 7.80e-54 189
MsG0880047636.01.T01 AT4G02570 50.838 179 88 0 4 182 3 181 7.80e-54 189
MsG0880047636.01.T01 AT1G43140 43.820 178 100 0 1 178 9 186 2.06e-44 162
MsG0880047636.01.T01 AT1G59790 44.318 176 94 2 7 180 12 185 6.39e-42 150
MsG0880047636.01.T01 AT1G59790 44.318 176 94 2 7 180 12 185 7.40e-42 150
MsG0880047636.01.T01 AT1G02980 42.105 171 98 1 9 178 8 178 1.42e-37 143
MsG0880047636.01.T01 AT1G02980 42.105 171 98 1 9 178 8 178 1.42e-37 143
MsG0880047636.01.T01 AT1G59800 35.632 174 108 1 7 180 7 176 4.96e-29 113
MsG0880047636.01.T01 AT4G34210 33.824 136 82 2 203 334 3 134 1.28e-13 68.2
MsG0880047636.01.T01 AT1G75950 35.556 135 71 3 203 325 3 133 3.89e-13 67.0
MsG0880047636.01.T01 AT4G34470 33.088 136 83 2 203 334 3 134 2.31e-12 64.7
MsG0880047636.01.T01 AT3G21850 35.294 136 81 3 203 334 3 135 2.50e-12 64.7
MsG0880047636.01.T01 AT2G03170 36.090 133 80 2 203 334 3 131 2.69e-12 64.3
MsG0880047636.01.T01 AT3G21860 34.507 142 73 4 203 334 3 134 7.72e-11 60.5
MsG0880047636.01.T01 AT3G60020 31.655 139 85 3 202 334 1 135 9.57e-11 60.1

Find 84 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCATGGGATAAGAAATT+TGG 0.172220 8:+89038003 MsG0880047636.01.T01:CDS
CATCATGCTGTTAAAAGTTT+AGG 0.226714 8:+89038135 MsG0880047636.01.T01:three_prime_UTR
CTATGATCCTGTTTAAAGTT+TGG 0.242763 8:+89038187 MsG0880047636.01.T01:three_prime_UTR
ATCACTAACCAAATGGTAAA+AGG 0.277704 8:-89036412 None:intergenic
TGTACTTGTCGTATAGTTCT+AGG 0.281785 8:-89035679 None:intergenic
TTAATAGGTTCTGCCATCTT+TGG 0.290960 8:+89036233 MsG0880047636.01.T01:intron
AAACTCGTTCGTTCCAAGTT+AGG 0.294919 8:+89035063 MsG0880047636.01.T01:five_prime_UTR
GTAATTGCAGGAAGAGAAAA+TGG 0.299795 8:+89037645 MsG0880047636.01.T01:intron
TTCAAGAATGTTGAGGAGTT+TGG 0.315163 8:-89035170 None:intergenic
TGTTCCTCAGGAGTGAAATT+AGG 0.316139 8:-89035205 None:intergenic
ATCTTCTCTTCTGCCCGTTT+CGG 0.316377 8:-89037202 None:intergenic
AGAGAAGGAAGTTTATATCT+TGG 0.318136 8:-89036369 None:intergenic
GGTTGTGTTTGAAGTTGATT+TGG 0.328338 8:+89037720 MsG0880047636.01.T01:CDS
TGAAGATCATCCAGAGTTAT+AGG 0.337687 8:-89037940 None:intergenic
ATATTCTTACGTACGTATAT+AGG 0.352246 8:-89035234 None:intergenic
CTTCTTGAGCGGCATAGAAT+TGG 0.356922 8:-89038059 None:intergenic
CATAGTCATTAGGAGGCCTT+TGG 0.367248 8:-89035655 None:intergenic
AGAGATGAATAAAGAAATAC+TGG 0.372946 8:+89036548 MsG0880047636.01.T01:CDS
ACTTTCTTTGATAAAACATC+TGG 0.378071 8:-89037676 None:intergenic
AAACTCCTCAACATTCTTGA+AGG 0.392226 8:+89035172 MsG0880047636.01.T01:CDS
TGTTCATCCAAACTTTAAAC+AGG 0.396824 8:-89038194 None:intergenic
AACACTTGCAATTAAAGCAT+TGG 0.403799 8:+89037231 MsG0880047636.01.T01:CDS
CAAAGGCCTCCTAATGACTA+TGG 0.405765 8:+89035656 MsG0880047636.01.T01:CDS
CTCAGGAGTGAAATTAGGTT+CGG 0.406007 8:-89035200 None:intergenic
AACTCGTTCGTTCCAAGTTA+GGG 0.414454 8:+89035064 MsG0880047636.01.T01:five_prime_UTR
GTTGTGTTTGAAGTTGATTT+GGG 0.419950 8:+89037721 MsG0880047636.01.T01:CDS
GTTTGAAGTTGATTTGGGTT+TGG 0.429981 8:+89037726 MsG0880047636.01.T01:CDS
ATAGTCATTAGGAGGCCTTT+GGG 0.431046 8:-89035654 None:intergenic
GATGATCTTCATACATATGC+AGG 0.437688 8:+89037952 MsG0880047636.01.T01:CDS
AGTTCTAGGCCATAGTCATT+AGG 0.438107 8:-89035665 None:intergenic
GCCATCTTTGGAAGAAAAGA+AGG 0.440087 8:+89036245 MsG0880047636.01.T01:CDS
TAGAAGATGGTCAGATTACA+TGG 0.446362 8:+89036293 MsG0880047636.01.T01:CDS
TATCAACTTAGAAGAAGGAT+TGG 0.452292 8:+89035126 MsG0880047636.01.T01:CDS
ATTCACTTCATGAACAGAAA+TGG 0.455202 8:-89037815 None:intergenic
TGAGAGAACTGTTTAGAAGA+TGG 0.476251 8:+89036280 MsG0880047636.01.T01:CDS
TAAACAGTTCTCTCAACAAA+AGG 0.478548 8:-89036272 None:intergenic
AGAGACTTGGGAACCTTGCA+TGG 0.478969 8:+89037989 MsG0880047636.01.T01:CDS
TGATGTTGACCCTATAACTC+TGG 0.483537 8:+89037930 MsG0880047636.01.T01:CDS
GAATTTATCAACTTAGAAGA+AGG 0.483555 8:+89035121 MsG0880047636.01.T01:CDS
CTATTATACTTGTGCAGCAT+CGG 0.485978 8:-89038239 None:intergenic
TCAGGAGTGAAATTAGGTTC+GGG 0.496733 8:-89035199 None:intergenic
GTGCAGCATCGGTTGAACTT+TGG 0.497556 8:-89038228 None:intergenic
TAGAATTGGACGAGTTCCTC+TGG 0.497801 8:-89038045 None:intergenic
GTATCCAGATTGATCCGAAA+CGG 0.501653 8:+89037188 MsG0880047636.01.T01:intron
TCAACATCACCAATCGGAAT+CGG 0.502713 8:-89037790 None:intergenic
TATCCAGATTGATCCGAAAC+GGG 0.511511 8:+89037189 MsG0880047636.01.T01:intron
ACTGGATGCTATAGTTGCTA+TGG 0.514027 8:+89036566 MsG0880047636.01.T01:CDS
GAAAGTCAACTTGGTAAGCT+CGG 0.520925 8:+89037693 MsG0880047636.01.T01:CDS
CAAATTTCTTATCCCATGCA+AGG 0.522321 8:-89038002 None:intergenic
TCAACTTGGTAAGCTCGGAC+AGG 0.523618 8:+89037698 MsG0880047636.01.T01:CDS
AAGTAGAGAGAACCCTAACT+TGG 0.524035 8:-89035076 None:intergenic
GGTTCTCTCTACTTCTGTCA+AGG 0.529137 8:+89035085 MsG0880047636.01.T01:five_prime_UTR
TATAGGTTAATGTGTTCCTC+AGG 0.531967 8:-89035217 None:intergenic
AGTATGTTGATCTCAAGGAC+TGG 0.535333 8:+89037893 MsG0880047636.01.T01:CDS
GAAGATCATCCAGAGTTATA+GGG 0.538617 8:-89037939 None:intergenic
GAGACCATTCCGATTCCGAT+TGG 0.541494 8:+89037781 MsG0880047636.01.T01:CDS
ATGGTATCAACATCACCAAT+CGG 0.541955 8:-89037796 None:intergenic
TTTATCAAAGAAAGTCAACT+TGG 0.543241 8:+89037684 MsG0880047636.01.T01:CDS
GTATGTTGATCTCAAGGACT+GGG 0.555633 8:+89037894 MsG0880047636.01.T01:CDS
ATGGTAAAAGGATATGAAGC+TGG 0.555987 8:-89036400 None:intergenic
ACAGAAGTATGTTGATCTCA+AGG 0.556799 8:+89037888 MsG0880047636.01.T01:CDS
CAGATTACATGGTTATGACC+AGG 0.565886 8:+89036304 MsG0880047636.01.T01:CDS
ATCACCAATCGGAATCGGAA+TGG 0.586243 8:-89037785 None:intergenic
GAAGTTTGAGTCTTCTTGAG+CGG 0.586794 8:-89038070 None:intergenic
AGAACTATACGACAAGTACA+AGG 0.591577 8:+89035682 MsG0880047636.01.T01:CDS
TACTTGAAAATCGAGAGACT+TGG 0.593142 8:+89037976 MsG0880047636.01.T01:CDS
CAACTTGGTAAGCTCGGACA+GGG 0.603846 8:+89037699 MsG0880047636.01.T01:CDS
CTCAAGAATACACAAGGCAA+AGG 0.606376 8:+89037279 MsG0880047636.01.T01:CDS
ACTTGAAAATCGAGAGACTT+GGG 0.609483 8:+89037977 MsG0880047636.01.T01:CDS
CTGTCAAGGTATGACGATGA+GGG 0.611547 8:+89035099 MsG0880047636.01.T01:exon
GTCATTAGGAGGCCTTTGGG+TGG 0.615112 8:-89035651 None:intergenic
GAATAGCAAAATGTTGAGCA+TGG 0.627648 8:+89037834 MsG0880047636.01.T01:CDS
CGATTGCTCAAGAATACACA+AGG 0.630865 8:+89037273 MsG0880047636.01.T01:CDS
TCTGTCAAGGTATGACGATG+AGG 0.635757 8:+89035098 MsG0880047636.01.T01:exon
GAGACTTGGGAACCTTGCAT+GGG 0.636934 8:+89037990 MsG0880047636.01.T01:CDS
GTAAACCTTCAAGAATGTTG+AGG 0.636957 8:-89035177 None:intergenic
TCTAGGCCATAGTCATTAGG+AGG 0.637348 8:-89035662 None:intergenic
TCTTTGGAAGAAAAGAAGGA+TGG 0.640362 8:+89036249 MsG0880047636.01.T01:CDS
GGATTGGAGACTATGCAGAA+AGG 0.648663 8:+89035142 MsG0880047636.01.T01:CDS
AAATCTAAAGACTCTTCTCG+TGG 0.650288 8:-89038110 None:intergenic
ATGATCTTCATACATATGCA+GGG 0.656987 8:+89037953 MsG0880047636.01.T01:CDS
CGAACCTAATTTCACTCCTG+AGG 0.662065 8:+89035201 MsG0880047636.01.T01:CDS
TCTACAATATGTCCACCCAA+AGG 0.683184 8:+89035639 MsG0880047636.01.T01:CDS
GATAAAAGACATGACACCAG+AGG 0.694992 8:+89038029 MsG0880047636.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATAATTGTATTAGAAA+CGG + Chr8:89036687-89036706 MsG0880047636.01.T01:intron 15.0%
!! ATAACAAAGATTAAAACATA+AGG - Chr8:89037121-89037140 None:intergenic 15.0%
!! CAAAAAAAAACTACATAATT+AGG - Chr8:89036990-89037009 None:intergenic 15.0%
!! TAAAAACAACATAAACTAAA+AGG + Chr8:89036753-89036772 MsG0880047636.01.T01:intron 15.0%
!!! AATTCTTTTGAAATATGTTT+TGG + Chr8:89037364-89037383 MsG0880047636.01.T01:intron 15.0%
!! AAAGAAATATTAGGATTCTT+TGG + Chr8:89037520-89037539 MsG0880047636.01.T01:intron 20.0%
!! AAGTATCAAACATATACAAA+TGG - Chr8:89036605-89036624 None:intergenic 20.0%
!! AAGTATTTAGCGTTATTATT+GGG + Chr8:89035375-89035394 MsG0880047636.01.T01:intron 20.0%
!! AATACATCTTTCTTGTTAAT+AGG + Chr8:89036218-89036237 MsG0880047636.01.T01:intron 20.0%
!! AGAAACTTTAATAATGTATC+TGG + Chr8:89035312-89035331 MsG0880047636.01.T01:intron 20.0%
!! AGTATCAAACATATACAAAT+GGG - Chr8:89036604-89036623 None:intergenic 20.0%
!! AGTATTAGAAATTAGACTTA+AGG - Chr8:89036092-89036111 None:intergenic 20.0%
!! ATCCTAATATTTCTTTATAG+TGG - Chr8:89037516-89037535 None:intergenic 20.0%
!! GAAACTTTAATAATGTATCT+GGG + Chr8:89035313-89035332 MsG0880047636.01.T01:intron 20.0%
!! GATTTATATATGACTATTTC+AGG + Chr8:89037548-89037567 MsG0880047636.01.T01:intron 20.0%
!! TAAGTATTTAGCGTTATTAT+TGG + Chr8:89035374-89035393 MsG0880047636.01.T01:intron 20.0%
!! TACCACTATAAAGAAATATT+AGG + Chr8:89037511-89037530 MsG0880047636.01.T01:intron 20.0%
!! TATAAGTTCCAATTATACAA+CGG - Chr8:89036830-89036849 None:intergenic 20.0%
!! TTATTATTGGGATAAAGATA+AGG + Chr8:89035387-89035406 MsG0880047636.01.T01:intron 20.0%
!!! TGCATTACAATTTTTAGAAA+AGG - Chr8:89035613-89035632 None:intergenic 20.0%
!!! TTAGTCTAGTTTTTTTAACT+TGG - Chr8:89037615-89037634 None:intergenic 20.0%
!!! TTTTCTAAAAATTGTAATGC+AGG + Chr8:89035612-89035631 MsG0880047636.01.T01:intron 20.0%
! AAACTAGACTAAGATATTAG+TGG + Chr8:89037623-89037642 MsG0880047636.01.T01:intron 25.0%
! AAATGAATTAACACAACACA+AGG - Chr8:89035588-89035607 None:intergenic 25.0%
! ACTTATGTCAAAAAGATTTG+AGG + Chr8:89037750-89037769 MsG0880047636.01.T01:CDS 25.0%
! ACTTTCTTTGATAAAACATC+TGG - Chr8:89037679-89037698 None:intergenic 25.0%
! AGAGATGAATAAAGAAATAC+TGG + Chr8:89036548-89036567 MsG0880047636.01.T01:CDS 25.0%
! ATAAGTTCCAATTATACAAC+GGG - Chr8:89036829-89036848 None:intergenic 25.0%
! ATAATTGGAACTTATACAGT+GGG + Chr8:89036834-89036853 MsG0880047636.01.T01:intron 25.0%
! ATATAAAACTGTATGGGAAA+GGG - Chr8:89035957-89035976 None:intergenic 25.0%
! ATATTCTTACGTACGTATAT+AGG - Chr8:89035237-89035256 None:intergenic 25.0%
! ATTAGAAATTAGACTTAAGG+AGG - Chr8:89036089-89036108 None:intergenic 25.0%
! GAATTTATCAACTTAGAAGA+AGG + Chr8:89035121-89035140 MsG0880047636.01.T01:CDS 25.0%
! GGAATCATTGCTTAATAATT+GGG - Chr8:89037594-89037613 None:intergenic 25.0%
! TAAAATTTCCATATCTAGCA+TGG + Chr8:89037341-89037360 MsG0880047636.01.T01:intron 25.0%
! TAATGTAATACCTACACTAT+CGG - Chr8:89036184-89036203 None:intergenic 25.0%
! TATAATTGGAACTTATACAG+TGG + Chr8:89036833-89036852 MsG0880047636.01.T01:intron 25.0%
! TGCTATATTCAATCCAAATT+AGG + Chr8:89037095-89037114 MsG0880047636.01.T01:intron 25.0%
! TGGAATCATTGCTTAATAAT+TGG - Chr8:89037595-89037614 None:intergenic 25.0%
! TTAAAACATAAGGCCTAATT+TGG - Chr8:89037111-89037130 None:intergenic 25.0%
! TTACTTTCTCAAATAATCAC+CGG - Chr8:89035813-89035832 None:intergenic 25.0%
! TTGACCATATAAAACTGTAT+GGG - Chr8:89035963-89035982 None:intergenic 25.0%
! TTTAATCGTCAACTATCTAA+TGG + Chr8:89036893-89036912 MsG0880047636.01.T01:intron 25.0%
! TTTATCAAAGAAAGTCAACT+TGG + Chr8:89037684-89037703 MsG0880047636.01.T01:CDS 25.0%
! TTTGACCATATAAAACTGTA+TGG - Chr8:89035964-89035983 None:intergenic 25.0%
!! GATAGCAAAATAATTTTGAG+AGG - Chr8:89036332-89036351 None:intergenic 25.0%
!!! CTTTTGAAATATGTTTTGGT+CGG + Chr8:89037368-89037387 MsG0880047636.01.T01:intron 25.0%
!!! TGCTTCATTTTAATTATCTC+AGG + Chr8:89036518-89036537 MsG0880047636.01.T01:intron 25.0%
AAAGAATTCCATGCTAGATA+TGG - Chr8:89037352-89037371 None:intergenic 30.0%
AACACTTGCAATTAAAGCAT+TGG + Chr8:89037231-89037250 MsG0880047636.01.T01:CDS 30.0%
AAGATATTAGTGGTAATTGC+AGG + Chr8:89037633-89037652 MsG0880047636.01.T01:intron 30.0%
AGAGAAGGAAGTTTATATCT+TGG - Chr8:89036372-89036391 None:intergenic 30.0%
ATATGAATTGTGCAGTTGAA+TGG + Chr8:89037046-89037065 MsG0880047636.01.T01:intron 30.0%
ATCACTAACCAAATGGTAAA+AGG - Chr8:89036415-89036434 None:intergenic 30.0%
ATGATCTTCATACATATGCA+GGG + Chr8:89037953-89037972 MsG0880047636.01.T01:CDS 30.0%
ATTCACTTCATGAACAGAAA+TGG - Chr8:89037818-89037837 None:intergenic 30.0%
CATATAAAACTGTATGGGAA+AGG - Chr8:89035958-89035977 None:intergenic 30.0%
CATCATGCTGTTAAAAGTTT+AGG + Chr8:89038135-89038154 MsG0880047636.01.T01:three_prime_UTR 30.0%
CATGTTTAGCAAAATCCAAA+TGG - Chr8:89036149-89036168 None:intergenic 30.0%
CTGGGAATAGAGTTTATTAA+AGG + Chr8:89035504-89035523 MsG0880047636.01.T01:intron 30.0%
CTTCAAAGACCATTATATAC+TGG - Chr8:89036054-89036073 None:intergenic 30.0%
GAATATCATCACTAACCAAA+TGG - Chr8:89036422-89036441 None:intergenic 30.0%
GTGTAGGTATTACATTAACA+TGG + Chr8:89036187-89036206 MsG0880047636.01.T01:intron 30.0%
TAAACAGTTCTCTCAACAAA+AGG - Chr8:89036275-89036294 None:intergenic 30.0%
TACACTTGCATTTGAGAAAA+AGG + Chr8:89036919-89036938 MsG0880047636.01.T01:intron 30.0%
TATCAACTTAGAAGAAGGAT+TGG + Chr8:89035126-89035145 MsG0880047636.01.T01:CDS 30.0%
TCGTTAGGAAAATTGTATTC+AGG + Chr8:89037400-89037419 MsG0880047636.01.T01:intron 30.0%
TGTTCATCCAAACTTTAAAC+AGG - Chr8:89038197-89038216 None:intergenic 30.0%
TTATACAGTGGGAACTTATT+TGG + Chr8:89036845-89036864 MsG0880047636.01.T01:intron 30.0%
TTATGTATGAGACTCTAGTT+TGG - Chr8:89037449-89037468 None:intergenic 30.0%
! AATAATGTATCTGGGATTAG+TGG + Chr8:89035321-89035340 MsG0880047636.01.T01:intron 30.0%
! ATGTGCTGTACACTTTATTT+AGG - Chr8:89036733-89036752 None:intergenic 30.0%
! CATTTGGATTTTGCTAAACA+TGG + Chr8:89036147-89036166 MsG0880047636.01.T01:intron 30.0%
! CTATGATCCTGTTTAAAGTT+TGG + Chr8:89038187-89038206 MsG0880047636.01.T01:three_prime_UTR 30.0%
! CTTCATATCCTTTTACCATT+TGG + Chr8:89036404-89036423 MsG0880047636.01.T01:CDS 30.0%
! GTTGTGTTTGAAGTTGATTT+GGG + Chr8:89037721-89037740 MsG0880047636.01.T01:CDS 30.0%
! TAGTCTTGATAAACTCTTTC+AGG - Chr8:89035413-89035432 None:intergenic 30.0%
! TCCTTCTCAAGATTTAAAAC+TGG - Chr8:89037487-89037506 None:intergenic 30.0%
!! AACATAAACTAAAAGGCACT+TGG + Chr8:89036760-89036779 MsG0880047636.01.T01:intron 30.0%
!! ACAGTTTTATATGGTCAAAG+TGG + Chr8:89035965-89035984 MsG0880047636.01.T01:intron 30.0%
!! ACATAAACTAAAAGGCACTT+GGG + Chr8:89036761-89036780 MsG0880047636.01.T01:intron 30.0%
!! CAGTTTTATATGGTCAAAGT+GGG + Chr8:89035966-89035985 MsG0880047636.01.T01:intron 30.0%
!! CTTTCCCATACAGTTTTATA+TGG + Chr8:89035956-89035975 MsG0880047636.01.T01:intron 30.0%
!! TATTTTTACCATCCTTGGTA+GGG - Chr8:89036800-89036819 None:intergenic 30.0%
!!! ACCAGTTTTAAATCTTGAGA+AGG + Chr8:89037483-89037502 MsG0880047636.01.T01:intron 30.0%
AAACTCCTCAACATTCTTGA+AGG + Chr8:89035172-89035191 MsG0880047636.01.T01:CDS 35.0%
AAATCTAAAGACTCTTCTCG+TGG - Chr8:89038113-89038132 None:intergenic 35.0%
AAGACCATTATATACTGGAC+AGG - Chr8:89036049-89036068 None:intergenic 35.0%
AATTAGGTCAAGACACGTAA+AGG - Chr8:89036974-89036993 None:intergenic 35.0%
ACTTGAAAATCGAGAGACTT+GGG + Chr8:89037977-89037996 MsG0880047636.01.T01:CDS 35.0%
AGAACTATACGACAAGTACA+AGG + Chr8:89035682-89035701 MsG0880047636.01.T01:CDS 35.0%
AGCAAACTCAGAGTTCATAA+AGG - Chr8:89036502-89036521 None:intergenic 35.0%
ATGGTAAAAGGATATGAAGC+TGG - Chr8:89036403-89036422 None:intergenic 35.0%
ATGGTATCAACATCACCAAT+CGG - Chr8:89037799-89037818 None:intergenic 35.0%
CAAACTCAGAGTTCATAAAG+GGG - Chr8:89036500-89036519 None:intergenic 35.0%
CAAATTTCTTATCCCATGCA+AGG - Chr8:89038005-89038024 None:intergenic 35.0%
CTAACCCATCTTTACAAAAC+CGG - Chr8:89035448-89035467 None:intergenic 35.0%
CTATTATACTTGTGCAGCAT+CGG - Chr8:89038242-89038261 None:intergenic 35.0%
CTTGCATGGGATAAGAAATT+TGG + Chr8:89038003-89038022 MsG0880047636.01.T01:CDS 35.0%
GAAGACAAAAGAGCTATTAC+AGG - Chr8:89037160-89037179 None:intergenic 35.0%
GAAGATCATCCAGAGTTATA+GGG - Chr8:89037942-89037961 None:intergenic 35.0%
GAATAGCAAAATGTTGAGCA+TGG + Chr8:89037834-89037853 MsG0880047636.01.T01:CDS 35.0%
GATGATCTTCATACATATGC+AGG + Chr8:89037952-89037971 MsG0880047636.01.T01:CDS 35.0%
GATTAAAGTCAAGCATCTCT+TGG - Chr8:89036880-89036899 None:intergenic 35.0%
GCAAACTCAGAGTTCATAAA+GGG - Chr8:89036501-89036520 None:intergenic 35.0%
GTAAACCTTCAAGAATGTTG+AGG - Chr8:89035180-89035199 None:intergenic 35.0%
GTAATTGCAGGAAGAGAAAA+TGG + Chr8:89037645-89037664 MsG0880047636.01.T01:intron 35.0%
TACTTGAAAATCGAGAGACT+TGG + Chr8:89037976-89037995 MsG0880047636.01.T01:CDS 35.0%
TAGAAGATGGTCAGATTACA+TGG + Chr8:89036293-89036312 MsG0880047636.01.T01:CDS 35.0%
TATAGGTTAATGTGTTCCTC+AGG - Chr8:89035220-89035239 None:intergenic 35.0%
TGAAGATCATCCAGAGTTAT+AGG - Chr8:89037943-89037962 None:intergenic 35.0%
TGAGAGAACTGTTTAGAAGA+TGG + Chr8:89036280-89036299 MsG0880047636.01.T01:CDS 35.0%
TGATATTATGTAGCACACAC+CGG + Chr8:89035791-89035810 MsG0880047636.01.T01:intron 35.0%
TGTACTTGTCGTATAGTTCT+AGG - Chr8:89035682-89035701 None:intergenic 35.0%
TGTGAGTAAGCAAACAACTA+TGG - Chr8:89036118-89036137 None:intergenic 35.0%
TTAATAGGTTCTGCCATCTT+TGG + Chr8:89036233-89036252 MsG0880047636.01.T01:intron 35.0%
TTCAAGAATGTTGAGGAGTT+TGG - Chr8:89035173-89035192 None:intergenic 35.0%
TTCCAATTATACAACGGGTA+CGG - Chr8:89036824-89036843 None:intergenic 35.0%
! ACAGAAGTATGTTGATCTCA+AGG + Chr8:89037888-89037907 MsG0880047636.01.T01:CDS 35.0%
! GCTCTTTTGTCTTCATTTCT+TGG + Chr8:89037166-89037185 MsG0880047636.01.T01:intron 35.0%
! GCTGTACACTTTATTTAGGT+TGG - Chr8:89036729-89036748 None:intergenic 35.0%
! GGCTGATTCAACTAGTTTAA+CGG + Chr8:89035525-89035544 MsG0880047636.01.T01:intron 35.0%
! GGTTGTGTTTGAAGTTGATT+TGG + Chr8:89037720-89037739 MsG0880047636.01.T01:CDS 35.0%
! TCCTTCTTTTCTTCCAAAGA+TGG - Chr8:89036249-89036268 None:intergenic 35.0%
! TCTTTGGAAGAAAAGAAGGA+TGG + Chr8:89036249-89036268 MsG0880047636.01.T01:CDS 35.0%
! TGATTCAACTAGTTTAACGG+TGG + Chr8:89035528-89035547 MsG0880047636.01.T01:intron 35.0%
! TGGATTTTGCTAAACATGGA+AGG + Chr8:89036151-89036170 MsG0880047636.01.T01:intron 35.0%
!! GTATTTTTACCATCCTTGGT+AGG - Chr8:89036801-89036820 None:intergenic 35.0%
!! GTTTGAAGTTGATTTGGGTT+TGG + Chr8:89037726-89037745 MsG0880047636.01.T01:CDS 35.0%
!!! AAGCTGGTTTTTTCAAGAGA+AGG - Chr8:89036387-89036406 None:intergenic 35.0%
AAACTCGTTCGTTCCAAGTT+AGG + Chr8:89035063-89035082 MsG0880047636.01.T01:five_prime_UTR 40.0%
AACTCGTTCGTTCCAAGTTA+GGG + Chr8:89035064-89035083 MsG0880047636.01.T01:five_prime_UTR 40.0%
AAGACTAACAATCTTCACGC+CGG + Chr8:89035426-89035445 MsG0880047636.01.T01:intron 40.0%
AAGTAGAGAGAACCCTAACT+TGG - Chr8:89035079-89035098 None:intergenic 40.0%
ACGCTGTATTTGCTCAATCT+TGG + Chr8:89035558-89035577 MsG0880047636.01.T01:intron 40.0%
ACTCACATGCATCAACCATT+TGG + Chr8:89036131-89036150 MsG0880047636.01.T01:intron 40.0%
ACTGCCTGTCCAGTATATAA+TGG + Chr8:89036042-89036061 MsG0880047636.01.T01:intron 40.0%
ACTGGATGCTATAGTTGCTA+TGG + Chr8:89036566-89036585 MsG0880047636.01.T01:CDS 40.0%
ACTTCAGATTTAGGCATGTC+TGG - Chr8:89035874-89035893 None:intergenic 40.0%
AGGTTAAGAACCGATAGTGT+AGG + Chr8:89036171-89036190 MsG0880047636.01.T01:intron 40.0%
AGTATGTTGATCTCAAGGAC+TGG + Chr8:89037893-89037912 MsG0880047636.01.T01:CDS 40.0%
ATAGTCATTAGGAGGCCTTT+GGG - Chr8:89035657-89035676 None:intergenic 40.0%
CAGAGTTCATAAAGGGGAAA+GGG - Chr8:89036494-89036513 None:intergenic 40.0%
CAGATTACATGGTTATGACC+AGG + Chr8:89036304-89036323 MsG0880047636.01.T01:CDS 40.0%
CGATTGCTCAAGAATACACA+AGG + Chr8:89037273-89037292 MsG0880047636.01.T01:CDS 40.0%
CTCAAGAATACACAAGGCAA+AGG + Chr8:89037279-89037298 MsG0880047636.01.T01:CDS 40.0%
CTCAGGAGTGAAATTAGGTT+CGG - Chr8:89035203-89035222 None:intergenic 40.0%
GAAAGTCAACTTGGTAAGCT+CGG + Chr8:89037693-89037712 MsG0880047636.01.T01:CDS 40.0%
GAAGTTTGAGTCTTCTTGAG+CGG - Chr8:89038073-89038092 None:intergenic 40.0%
GATAAAAGACATGACACCAG+AGG + Chr8:89038029-89038048 MsG0880047636.01.T01:CDS 40.0%
GTATCCAGATTGATCCGAAA+CGG + Chr8:89037188-89037207 MsG0880047636.01.T01:intron 40.0%
GTATGTTGATCTCAAGGACT+GGG + Chr8:89037894-89037913 MsG0880047636.01.T01:CDS 40.0%
GTATTAGAAACGGAGTACAG+AGG + Chr8:89036697-89036716 MsG0880047636.01.T01:intron 40.0%
TATCCAGATTGATCCGAAAC+GGG + Chr8:89037189-89037208 MsG0880047636.01.T01:intron 40.0%
TCAACATCACCAATCGGAAT+CGG - Chr8:89037793-89037812 None:intergenic 40.0%
TCAGAGTTCATAAAGGGGAA+AGG - Chr8:89036495-89036514 None:intergenic 40.0%
TCAGGAGTGAAATTAGGTTC+GGG - Chr8:89035202-89035221 None:intergenic 40.0%
TCCAATTATACAACGGGTAC+GGG - Chr8:89036823-89036842 None:intergenic 40.0%
TCTACAATATGTCCACCCAA+AGG + Chr8:89035639-89035658 MsG0880047636.01.T01:CDS 40.0%
TGAATTGTGCAGTTGAATGG+TGG + Chr8:89037049-89037068 MsG0880047636.01.T01:intron 40.0%
TGATGTTGACCCTATAACTC+TGG + Chr8:89037930-89037949 MsG0880047636.01.T01:CDS 40.0%
TGTTCCTCAGGAGTGAAATT+AGG - Chr8:89035208-89035227 None:intergenic 40.0%
! AATTTTCCTAACGACGCACA+AGG - Chr8:89037394-89037413 None:intergenic 40.0%
! GCCATCTTTGGAAGAAAAGA+AGG + Chr8:89036245-89036264 MsG0880047636.01.T01:CDS 40.0%
!! ACGGGTATTTTTACCATCCT+TGG - Chr8:89036805-89036824 None:intergenic 40.0%
!! AGCACTGACACTTCAGATTT+AGG - Chr8:89035883-89035902 None:intergenic 40.0%
!! AGTTCTAGGCCATAGTCATT+AGG - Chr8:89035668-89035687 None:intergenic 40.0%
!!! AAATAATTTTGAGAGGCGCC+TGG - Chr8:89036325-89036344 None:intergenic 40.0%
ACCCGTACCCGTTGTATAAT+TGG + Chr8:89036819-89036838 MsG0880047636.01.T01:intron 45.0%
AGAGTTAGACCCAATAGCGT+TGG + Chr8:89035466-89035485 MsG0880047636.01.T01:intron 45.0%
ATCACCAATCGGAATCGGAA+TGG - Chr8:89037788-89037807 None:intergenic 45.0%
ATCTTCTCTTCTGCCCGTTT+CGG - Chr8:89037205-89037224 None:intergenic 45.0%
CAAAGGCCTCCTAATGACTA+TGG + Chr8:89035656-89035675 MsG0880047636.01.T01:CDS 45.0%
CATAGTCATTAGGAGGCCTT+TGG - Chr8:89035658-89035677 None:intergenic 45.0%
CGAACCTAATTTCACTCCTG+AGG + Chr8:89035201-89035220 MsG0880047636.01.T01:CDS 45.0%
CTGTCAAGGTATGACGATGA+GGG + Chr8:89035099-89035118 MsG0880047636.01.T01:exon 45.0%
CTTCTTGAGCGGCATAGAAT+TGG - Chr8:89038062-89038081 None:intergenic 45.0%
GAGTTAGACCCAATAGCGTT+GGG + Chr8:89035467-89035486 MsG0880047636.01.T01:intron 45.0%
GGATTGGAGACTATGCAGAA+AGG + Chr8:89035142-89035161 MsG0880047636.01.T01:CDS 45.0%
GGTTCTCTCTACTTCTGTCA+AGG + Chr8:89035085-89035104 MsG0880047636.01.T01:five_prime_UTR 45.0%
TAGAATTGGACGAGTTCCTC+TGG - Chr8:89038048-89038067 None:intergenic 45.0%
TCAGATTTAGGCATGTCTGG+TGG - Chr8:89035871-89035890 None:intergenic 45.0%
TCTAGGCCATAGTCATTAGG+AGG - Chr8:89035665-89035684 None:intergenic 45.0%
TCTGTCAAGGTATGACGATG+AGG + Chr8:89035098-89035117 MsG0880047636.01.T01:exon 45.0%
!!! CACGCCGGTTTTGTAAAGAT+GGG + Chr8:89035441-89035460 MsG0880047636.01.T01:intron 45.0%
!!! TCACGCCGGTTTTGTAAAGA+TGG + Chr8:89035440-89035459 MsG0880047636.01.T01:intron 45.0%
AGAGACTTGGGAACCTTGCA+TGG + Chr8:89037989-89038008 MsG0880047636.01.T01:CDS 50.0%
CAACTTGGTAAGCTCGGACA+GGG + Chr8:89037699-89037718 MsG0880047636.01.T01:CDS 50.0%
GAGACCATTCCGATTCCGAT+TGG + Chr8:89037781-89037800 MsG0880047636.01.T01:CDS 50.0%
GAGACTTGGGAACCTTGCAT+GGG + Chr8:89037990-89038009 MsG0880047636.01.T01:CDS 50.0%
GATTTAGGCATGTCTGGTGG+CGG - Chr8:89035868-89035887 None:intergenic 50.0%
TACCATCCTTGGTAGGGTGT+CGG - Chr8:89036794-89036813 None:intergenic 50.0%
TCAACTTGGTAAGCTCGGAC+AGG + Chr8:89037698-89037717 MsG0880047636.01.T01:CDS 50.0%
! GTATCTGGGATTAGTGGCTG+TGG + Chr8:89035327-89035346 MsG0880047636.01.T01:intron 50.0%
!! GTGCAGCATCGGTTGAACTT+TGG - Chr8:89038231-89038250 None:intergenic 50.0%
CTGCCCGTTTCGGATCAATC+TGG - Chr8:89037195-89037214 None:intergenic 55.0%
GTCATTAGGAGGCCTTTGGG+TGG - Chr8:89035654-89035673 None:intergenic 55.0%
!! CTTGGTAGGGTGTCGGTCAT+CGG - Chr8:89036787-89036806 None:intergenic 55.0%
CGATGACCGACACCCTACCA+AGG + Chr8:89036785-89036804 MsG0880047636.01.T01:intron 60.0%
CTCCCACGCCCAACGCTATT+GGG - Chr8:89035478-89035497 None:intergenic 60.0%
GACCGACACCCTACCAAGGA+TGG + Chr8:89036789-89036808 MsG0880047636.01.T01:intron 60.0%
TCTCCCACGCCCAACGCTAT+TGG - Chr8:89035479-89035498 None:intergenic 60.0%
! AGACCCAATAGCGTTGGGCG+TGG + Chr8:89035472-89035491 MsG0880047636.01.T01:intron 60.0%
! GACCCAATAGCGTTGGGCGT+GGG + Chr8:89035473-89035492 MsG0880047636.01.T01:intron 60.0%
! TGGGCGTGGGAGAGTGTACT+GGG + Chr8:89035486-89035505 MsG0880047636.01.T01:intron 60.0%
! TTGGGCGTGGGAGAGTGTAC+TGG + Chr8:89035485-89035504 MsG0880047636.01.T01:intron 60.0%
! GGTCGGCCTTGTGCGTCGTT+AGG + Chr8:89037385-89037404 MsG0880047636.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 89035041 89038281 89035041 ID=MsG0880047636.01;Name=MsG0880047636.01
Chr8 mRNA 89035041 89038281 89035041 ID=MsG0880047636.01.T01;Parent=MsG0880047636.01;Name=MsG0880047636.01.T01;_AED=0.49;_eAED=0.49;_QI=68|1|1|1|1|1|6|153|348
Chr8 exon 89035041 89035242 89035041 ID=MsG0880047636.01.T01:exon:34988;Parent=MsG0880047636.01.T01
Chr8 exon 89035634 89035733 89035634 ID=MsG0880047636.01.T01:exon:34989;Parent=MsG0880047636.01.T01
Chr8 exon 89036240 89036425 89036240 ID=MsG0880047636.01.T01:exon:34990;Parent=MsG0880047636.01.T01
Chr8 exon 89036540 89036587 89036540 ID=MsG0880047636.01.T01:exon:34991;Parent=MsG0880047636.01.T01
Chr8 exon 89037196 89037300 89037196 ID=MsG0880047636.01.T01:exon:34992;Parent=MsG0880047636.01.T01
Chr8 exon 89037655 89038281 89037655 ID=MsG0880047636.01.T01:exon:34993;Parent=MsG0880047636.01.T01
Chr8 five_prime_UTR 89035041 89035108 89035041 ID=MsG0880047636.01.T01:five_prime_utr;Parent=MsG0880047636.01.T01
Chr8 CDS 89035109 89035242 89035109 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 CDS 89035634 89035733 89035634 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 CDS 89036240 89036425 89036240 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 CDS 89036540 89036587 89036540 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 CDS 89037196 89037300 89037196 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 CDS 89037655 89038128 89037655 ID=MsG0880047636.01.T01:cds;Parent=MsG0880047636.01.T01
Chr8 three_prime_UTR 89038129 89038281 89038129 ID=MsG0880047636.01.T01:three_prime_utr;Parent=MsG0880047636.01.T01
Gene Sequence

>MsG0880047636.01.T01

ATGACGATGAGGGAATTTATCAACTTAGAAGAAGGATTGGAGACTATGCAGAAAGGTATCACCAAACTCCTCAACATTCTTGAAGGTTTACCCGAACCTAATTTCACTCCTGAGGAACACATTAACCTATATACGACTGTCTACAATATGTCCACCCAAAGGCCTCCTAATGACTATGGCCTAGAACTATACGACAAGTACAAGGAAACATGTGAAGAGTACATTTTATCAAAAGTTCTGCCATCTTTGGAAGAAAAGAAGGATGGCCTTTTGTTGAGAGAACTGTTTAGAAGATGGTCAGATTACATGGTTATGACCAGGCGCCTCTCAAAATTATTTTGCTATCTTGAACGACGCGACATTCCAAGATATAAACTTCCTTCTCTTGAAAAAACCAGCTTCATATCCTTTTACCATTTGGTATATGAAGAGATGAATAAAGAAATACTGGATGCTATAGTTGCTATGATTGATCCGAAACGGGCAGAAGAGAAGATTGATCAAACACTTGCAATTAAAGCATTGGATTTATACTTAGAGTTAAACGATTGCTCAAGAATACACAAGGCAAAGGAAGAGAAAATGGATCGCAGTCCAGATGTTTTATCAAAGAAAGTCAACTTGGTAAGCTCGGACAGGGTTGTGTTTGAAGTTGATTTGGGTTTGGCACTTATGTCAAAAAGATTTGAGGACATTATTGAGACCATTCCGATTCCGATTGGTGATGTTGATACCATTTCTGTTCATGAAGTGAATAGCAAAATGTTGAGCATGGTCGTTGAATACTGCAAGAAGCACGACAAAAGACAGAAGTATGTTGATCTCAAGGACTGGGATGCTCAATTTGTTGATGTTGACCCTATAACTCTGGATGATCTTCATACATATGCAGGGTACTTGAAAATCGAGAGACTTGGGAACCTTGCATGGGATAAGAAATTTGGCTTGATAAAAGACATGACACCAGAGGAACTCGTCCAATTCTATGCCGCTCAAGAAGACTCAAACTTCAAGTCATTAGAAGAGAACCACGAGAAGAGTCTTTAG
Protein sequence

>MsG0880047636.01.T01

MTMREFINLEEGLETMQKGITKLLNILEGLPEPNFTPEEHINLYTTVYNMSTQRPPNDYGLELYDKYKETCEEYILSKVLPSLEEKKDGLLLRELFRRWSDYMVMTRRLSKLFCYLERRDIPRYKLPSLEKTSFISFYHLVYEEMNKEILDAIVAMIDPKRAEEKIDQTLAIKALDLYLELNDCSRIHKAKEEKMDRSPDVLSKKVNLVSSDRVVFEVDLGLALMSKRFEDIIETIPIPIGDVDTISVHEVNSKMLSMVVEYCKKHDKRQKYVDLKDWDAQFVDVDPITLDDLHTYAGYLKIERLGNLAWDKKFGLIKDMTPEELVQFYAAQEDSNFKSLEENHEKSL*