Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021561.01.T01 | XP_024631910.1 | 87.179 | 117 | 10 | 2 | 10 | 123 | 1027 | 1141 | 9.92E-50 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021561.01.T01 | A0A2K3MEG5 | 79.121 | 91 | 19 | 0 | 10 | 100 | 82 | 172 | 5.62e-43 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048463.01 | MsG0480021561.01 | 0.824533 | 7.667642e-54 | 6.810445e-51 |
| MsG0080048464.01 | MsG0480021561.01 | 0.813663 | 2.283839e-51 | 1.500585e-48 |
| MsG0080048660.01 | MsG0480021561.01 | 0.820261 | 7.530739e-53 | 5.929571e-50 |
| MsG0080048826.01 | MsG0480021561.01 | 0.833633 | 4.768211e-56 | 5.523021e-53 |
| MsG0080048849.01 | MsG0480021561.01 | 0.811671 | 6.229618e-51 | 3.879697e-48 |
| MsG0080049069.01 | MsG0480021561.01 | 0.810110 | 1.356618e-50 | 8.107738e-48 |
| MsG0180000241.01 | MsG0480021561.01 | 0.802104 | 6.572049e-49 | 3.191967e-46 |
| MsG0180000840.01 | MsG0480021561.01 | 0.805047 | 1.611811e-49 | 8.442107e-47 |
| MsG0180001704.01 | MsG0480021561.01 | 0.806652 | 7.413809e-50 | 4.045763e-47 |
| MsG0180004025.01 | MsG0480021561.01 | 0.815685 | 8.144522e-52 | 5.653635e-49 |
| MsG0180006054.01 | MsG0480021561.01 | 0.826791 | 2.234544e-54 | 2.116806e-51 |
| MsG0280006309.01 | MsG0480021561.01 | 0.824025 | 1.009504e-53 | 8.836720e-51 |
| MsG0280010722.01 | MsG0480021561.01 | 0.805212 | 1.488445e-49 | 7.829071e-47 |
| MsG0280010807.01 | MsG0480021561.01 | 0.827998 | 1.147690e-54 | 1.126268e-51 |
| MsG0280011404.01 | MsG0480021561.01 | 0.815992 | 6.957074e-52 | 4.869943e-49 |
| MsG0380012005.01 | MsG0480021561.01 | 0.822685 | 2.075948e-53 | 1.749858e-50 |
| MsG0380012567.01 | MsG0480021561.01 | 0.808109 | 3.639481e-50 | 2.063005e-47 |
| MsG0480018653.01 | MsG0480021561.01 | 0.819056 | 1.418704e-52 | 1.080272e-49 |
| MsG0480019313.01 | MsG0480021561.01 | 0.833693 | 4.606941e-56 | 5.345649e-53 |
| MsG0480020024.01 | MsG0480021561.01 | 0.809706 | 1.657009e-50 | 9.798593e-48 |
| MsG0480020025.01 | MsG0480021561.01 | 0.837902 | 3.952133e-57 | 5.207431e-54 |
| MsG0480020283.01 | MsG0480021561.01 | 0.805612 | 1.227173e-49 | 6.521542e-47 |
| MsG0480020322.01 | MsG0480021561.01 | 0.801392 | 9.201208e-49 | 4.388982e-46 |
| MsG0480020887.01 | MsG0480021561.01 | 0.802006 | 6.883979e-49 | 3.335164e-46 |
| MsG0480020935.01 | MsG0480021561.01 | -0.810764 | 9.799192e-51 | 5.958667e-48 |
| MsG0480021201.01 | MsG0480021561.01 | 0.801809 | 7.556703e-49 | 3.642867e-46 |
| MsG0480021561.01 | MsG0480021869.01 | 0.809809 | 1.574943e-50 | 9.338622e-48 |
| MsG0480021561.01 | MsG0480022259.01 | 0.803297 | 3.729298e-49 | 1.867189e-46 |
| MsG0480021561.01 | MsG0480022359.01 | 0.847333 | 1.235597e-59 | 2.188592e-56 |
| MsG0480021561.01 | MsG0480022802.01 | 0.826785 | 2.242296e-54 | 2.123750e-51 |
| MsG0480021561.01 | MsG0480023251.01 | 0.800686 | 1.283098e-48 | 6.011976e-46 |
| MsG0480021561.01 | MsG0480023723.01 | 0.831217 | 1.891613e-55 | 2.039252e-52 |
| MsG0480021561.01 | MsG0480023877.01 | 0.829110 | 6.181453e-55 | 6.265894e-52 |
| MsG0480021561.01 | MsG0580024628.01 | 0.804568 | 2.029476e-49 | 1.049907e-46 |
| MsG0480021561.01 | MsG0580024788.01 | 0.808046 | 3.754207e-50 | 2.124461e-47 |
| MsG0480021561.01 | MsG0580024790.01 | -0.804245 | 2.369730e-49 | 1.215719e-46 |
| MsG0480021561.01 | MsG0580025467.01 | 0.820885 | 5.415213e-53 | 4.338452e-50 |
| MsG0480021561.01 | MsG0580025827.01 | 0.855939 | 4.504322e-62 | 1.057468e-58 |
| MsG0480021561.01 | MsG0580025832.01 | 0.822701 | 2.058221e-53 | 1.735703e-50 |
| MsG0480021561.01 | MsG0580026053.01 | 0.807588 | 4.697083e-50 | 2.626253e-47 |
| MsG0480021561.01 | MsG0580026122.01 | 0.835212 | 1.914150e-56 | 2.325051e-53 |
| MsG0480021561.01 | MsG0580027955.01 | 0.806585 | 7.660370e-50 | 4.173379e-47 |
| MsG0480021561.01 | MsG0580028428.01 | 0.812720 | 3.678661e-51 | 2.356427e-48 |
| MsG0480021561.01 | MsG0580029472.01 | 0.872171 | 3.903222e-67 | 1.616973e-63 |
| MsG0480021561.01 | MsG0680030514.01 | 0.817186 | 3.757479e-52 | 2.717481e-49 |
| MsG0480021561.01 | MsG0680030599.01 | 0.810577 | 1.075845e-50 | 6.509097e-48 |
| MsG0480021561.01 | MsG0680030907.01 | 0.805359 | 1.386953e-49 | 7.322923e-47 |
| MsG0480021561.01 | MsG0680031998.01 | 0.833351 | 5.607422e-56 | 6.441217e-53 |
| MsG0480021561.01 | MsG0680032460.01 | -0.811560 | 6.585483e-51 | 4.089649e-48 |
| MsG0480021561.01 | MsG0680032827.01 | 0.830657 | 2.595554e-55 | 2.752231e-52 |
| MsG0480021561.01 | MsG0680033427.01 | 0.804423 | 2.175706e-49 | 1.121320e-46 |
| MsG0480021561.01 | MsG0780037442.01 | 0.916971 | 9.365913e-86 | 2.640022e-81 |
| MsG0480021561.01 | MsG0780041187.01 | 0.808177 | 3.521171e-50 | 1.999632e-47 |
| MsG0480021561.01 | MsG0780041468.01 | 0.807444 | 5.039421e-50 | 2.807306e-47 |
| MsG0480021561.01 | MsG0780041747.01 | 0.801546 | 8.554636e-49 | 4.096499e-46 |
| MsG0480021561.01 | MsG0880041861.01 | 0.814020 | 1.906006e-51 | 1.264504e-48 |
| MsG0480021561.01 | MsG0880041864.01 | 0.816363 | 5.748428e-52 | 4.064940e-49 |
| MsG0480021561.01 | MsG0880042022.01 | 0.819270 | 1.268576e-52 | 9.716211e-50 |
| MsG0480021561.01 | MsG0880043157.01 | 0.802606 | 5.179264e-49 | 2.547925e-46 |
| MsG0480021561.01 | MsG0880043298.01 | 0.834567 | 2.781805e-56 | 3.314221e-53 |
| MsG0480021561.01 | MsG0880043955.01 | 0.801928 | 7.143755e-49 | 3.454167e-46 |
| MsG0480021561.01 | MsG0880044209.01 | 0.811533 | 6.677622e-51 | 4.143912e-48 |
| MsG0480021561.01 | MsG0880044611.01 | -0.820053 | 8.405743e-53 | 6.580927e-50 |
| MsG0480021561.01 | MsG0880045155.01 | -0.806220 | 9.144120e-50 | 4.935837e-47 |
| MsG0480021561.01 | MsG0880045722.01 | 0.811028 | 8.590857e-51 | 5.260906e-48 |
| MsG0480021561.01 | MsG0880045765.01 | 0.802849 | 4.615599e-49 | 2.284833e-46 |
| MsG0480021561.01 | MsG0880045992.01 | 0.817045 | 4.042463e-52 | 2.912494e-49 |
| MsG0480021561.01 | MsG0880046699.01 | 0.827774 | 1.299166e-54 | 1.266473e-51 |
| MsG0480021561.01 | MsG0880047481.01 | -0.800979 | 1.117744e-48 | 5.276821e-46 |
| MsG0480021561.01 | MsG0880047636.01 | 0.815201 | 1.043739e-51 | 7.149020e-49 |
| MsG0380015533.01 | MsG0480021561.01 | 0.804778 | 1.834846e-49 | 9.544110e-47 |
| MsG0380015784.01 | MsG0480021561.01 | 0.812715 | 3.688281e-51 | 2.362216e-48 |
| MsG0380015829.01 | MsG0480021561.01 | 0.801016 | 1.098697e-48 | 5.191719e-46 |
| MsG0380015891.01 | MsG0480021561.01 | 0.817116 | 3.895878e-52 | 2.812207e-49 |
| MsG0380016191.01 | MsG0480021561.01 | -0.806100 | 9.693170e-50 | 5.215970e-47 |
| MsG0380016285.01 | MsG0480021561.01 | 0.831470 | 1.639077e-55 | 1.780457e-52 |
| MsG0380016529.01 | MsG0480021561.01 | 0.800956 | 1.130065e-48 | 5.331714e-46 |
| MsG0380017176.01 | MsG0480021561.01 | 0.802676 | 5.010975e-49 | 2.469517e-46 |
| MsG0380017202.01 | MsG0480021561.01 | 0.841599 | 4.310502e-58 | 6.365822e-55 |
| MsG0380017293.01 | MsG0480021561.01 | 0.837367 | 5.421284e-57 | 7.026242e-54 |
| MsG0380017437.01 | MsG0480021561.01 | -0.808672 | 2.760252e-50 | 1.587883e-47 |
| MsG0380017931.01 | MsG0480021561.01 | 0.816663 | 4.925296e-52 | 3.511547e-49 |
| MsG0280007118.01 | MsG0480021561.01 | 0.812284 | 4.581159e-51 | 2.900879e-48 |
| MsG0280007647.01 | MsG0480021561.01 | 0.824980 | 6.015249e-54 | 5.412140e-51 |
| MsG0280008112.01 | MsG0480021561.01 | 0.806499 | 7.986159e-50 | 4.341368e-47 |
| MsG0280008928.01 | MsG0480021561.01 | 0.833131 | 6.358297e-56 | 7.256147e-53 |
| MsG0280009421.01 | MsG0480021561.01 | 0.800047 | 1.730607e-48 | 7.978690e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAGGGTTGACGATTC+AGG | 0.139753 | 4:-59846569 | MsG0480021561.01.T01:five_prime_UTR |
| GCGTTGAAAAGTTGCTATTA+TGG | 0.273242 | 4:-59845301 | MsG0480021561.01.T01:three_prime_UTR |
| TGAATTGAAGAGTTTATAAT+AGG | 0.289745 | 4:+59845246 | None:intergenic |
| ATTAATGGTGCTGCAAAGTT+TGG | 0.320369 | 4:-59846478 | MsG0480021561.01.T01:exon |
| GGAAGCATACGGTCCTTTCT+TGG | 0.323111 | 4:-59846223 | MsG0480021561.01.T01:CDS |
| GGAAGTCTTGTTGATTTAGT+TGG | 0.335009 | 4:-59846255 | MsG0480021561.01.T01:CDS |
| CAGTTAGGACCGAGGCTTCT+TGG | 0.340085 | 4:-59846587 | None:intergenic |
| GAGCGCTAGGAGCAAATGTT+TGG | 0.365369 | 4:-59845279 | MsG0480021561.01.T01:three_prime_UTR |
| GAGATGGATGAACTTTAGTT+TGG | 0.369334 | 4:-59845192 | MsG0480021561.01.T01:three_prime_UTR |
| AAAATACATTGAAATCCTTT+GGG | 0.375763 | 4:+59845922 | None:intergenic |
| CAGGAAGGAGAGGGTGATAA+TGG | 0.378426 | 4:-59845222 | MsG0480021561.01.T01:three_prime_UTR |
| TATAAACTCTTCAATTCAAC+AGG | 0.378733 | 4:-59845241 | MsG0480021561.01.T01:three_prime_UTR |
| ATGTAATAGTAGGTGGTCTT+TGG | 0.406228 | 4:-59845323 | MsG0480021561.01.T01:three_prime_UTR |
| TGGATGAGGTTACCTTTGAA+TGG | 0.410546 | 4:-59846203 | MsG0480021561.01.T01:CDS |
| TAGGACCGAGGCTTCTTGGC+AGG | 0.415660 | 4:-59846583 | None:intergenic |
| TTGAATTGAGCTTCTCGCCT+TGG | 0.420399 | 4:+59846371 | None:intergenic |
| TTGGCAGGGTTGACGATTCA+GGG | 0.436084 | 4:-59846568 | MsG0480021561.01.T01:five_prime_UTR |
| TGGTATGGAACTTCTTTCTC+CGG | 0.445848 | 4:+59846330 | None:intergenic |
| GGATGAGGTTACCTTTGAAT+GGG | 0.455125 | 4:-59846202 | MsG0480021561.01.T01:CDS |
| ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 4:-59846276 | MsG0480021561.01.T01:CDS |
| AGAGGTAGAGGCAGCGGAAG+AGG | 0.457632 | 4:-59845993 | MsG0480021561.01.T01:three_prime_UTR |
| ATTGTGTGATTGATTCATCT+TGG | 0.474013 | 4:+59846310 | None:intergenic |
| AATATCTTTATCCCATTCAA+AGG | 0.483583 | 4:+59846191 | None:intergenic |
| TTCAATTCAACAGGAAGGAG+AGG | 0.501539 | 4:-59845232 | MsG0480021561.01.T01:three_prime_UTR |
| ATACGGTCCTTTCTTGGATG+AGG | 0.503815 | 4:-59846217 | MsG0480021561.01.T01:CDS |
| GTGATTGATTCATCTTGGTA+TGG | 0.505565 | 4:+59846315 | None:intergenic |
| AGCGCTAGGAGCAAATGTTT+GGG | 0.510625 | 4:-59845278 | MsG0480021561.01.T01:three_prime_UTR |
| TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 4:-59846244 | MsG0480021561.01.T01:CDS |
| CGAATGTTAGGTAGAGGTAG+AGG | 0.532296 | 4:-59846005 | MsG0480021561.01.T01:intron |
| TTAGGTAGAGGTAGAGGCAG+CGG | 0.532621 | 4:-59845999 | MsG0480021561.01.T01:intron |
| AGGACCGAGGCTTCTTGGCA+GGG | 0.533687 | 4:-59846582 | None:intergenic |
| AGTTGCTATTATGGAGCGCT+AGG | 0.552952 | 4:-59845292 | MsG0480021561.01.T01:three_prime_UTR |
| AACTTTAGAAGATAGTAAGC+CGG | 0.555137 | 4:-59846349 | MsG0480021561.01.T01:CDS |
| AAGGTAACCTCATCCAAGAA+AGG | 0.563434 | 4:+59846210 | None:intergenic |
| TCAACCCTGCCAAGAAGCCT+CGG | 0.575981 | 4:+59846578 | None:intergenic |
| TGATAATGGTAACAGCGAGA+TGG | 0.587881 | 4:-59845208 | MsG0480021561.01.T01:three_prime_UTR |
| AACTCTTCAATTCAACAGGA+AGG | 0.589557 | 4:-59845237 | MsG0480021561.01.T01:three_prime_UTR |
| AAAAGAGATGTAATAGTAGG+TGG | 0.591998 | 4:-59845330 | MsG0480021561.01.T01:three_prime_UTR |
| TGATGAAACATATTCTGACT+AGG | 0.610583 | 4:-59846124 | MsG0480021561.01.T01:intron |
| TCAATTCAACAGGAAGGAGA+GGG | 0.611912 | 4:-59845231 | MsG0480021561.01.T01:three_prime_UTR |
| GTTGGCTGTGATTAAGACCA+AGG | 0.613774 | 4:-59846388 | MsG0480021561.01.T01:CDS |
| GGAGAAGTTGAGGAAGCATA+CGG | 0.617796 | 4:-59846234 | MsG0480021561.01.T01:CDS |
| TGGCAGGGTTGACGATTCAG+GGG | 0.627660 | 4:-59846567 | MsG0480021561.01.T01:five_prime_UTR |
| ATCTTCTCAAACAAACCCAA+AGG | 0.644202 | 4:-59845937 | MsG0480021561.01.T01:three_prime_UTR |
| ATTGATGACATAATATCATG+TGG | 0.743052 | 4:-59845076 | MsG0480021561.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTTACATGTAAAATA+TGG | - | Chr4:59845922-59845941 | MsG0480021561.01.T01:intron | 15.0% |
| !! | TCATATCATATAAAGAAAAT+AGG | + | Chr4:59845974-59845993 | None:intergenic | 15.0% |
| !!! | CAATGTATTTTTATGATATA+AGG | - | Chr4:59845664-59845683 | MsG0480021561.01.T01:intron | 15.0% |
| !!! | CATTTTGGATAATTTTATAT+TGG | - | Chr4:59846459-59846478 | MsG0480021561.01.T01:CDS | 15.0% |
| !!! | TTCATGATTTTTTTTTTTGT+AGG | - | Chr4:59846198-59846217 | MsG0480021561.01.T01:CDS | 15.0% |
| !! | AAAAATACATTGAAATCCTT+TGG | + | Chr4:59845656-59845675 | None:intergenic | 20.0% |
| !! | AAAATACATTGAAATCCTTT+GGG | + | Chr4:59845655-59845674 | None:intergenic | 20.0% |
| !! | AAAATATAATTGTGACATTC+AGG | - | Chr4:59846578-59846597 | MsG0480021561.01.T01:five_prime_UTR | 20.0% |
| !! | TGAATTGAAGAGTTTATAAT+AGG | + | Chr4:59846331-59846350 | None:intergenic | 20.0% |
| !! | TTAAAAAGAGATGTAATAGT+AGG | - | Chr4:59846241-59846260 | MsG0480021561.01.T01:CDS | 20.0% |
| !!! | ATCATGATCATTTTACATTT+TGG | - | Chr4:59846444-59846463 | MsG0480021561.01.T01:CDS | 20.0% |
| !!! | TAACTATATTTTGCCATATA+AGG | + | Chr4:59845907-59845926 | None:intergenic | 20.0% |
| ! | AATATCTTTATCCCATTCAA+AGG | + | Chr4:59845386-59845405 | None:intergenic | 25.0% |
| ! | AATTTATTATCTGGTAGCAT+AGG | - | Chr4:59845694-59845713 | MsG0480021561.01.T01:intron | 25.0% |
| ! | ACCATTAATGTAAAAATCCA+GGG | + | Chr4:59845085-59845104 | None:intergenic | 25.0% |
| ! | ATAGGGAGATATAGTTATTT+AGG | - | Chr4:59846086-59846105 | MsG0480021561.01.T01:intron | 25.0% |
| ! | ATCCTGAAGTAAAAAAAGAT+TGG | - | Chr4:59845164-59845183 | MsG0480021561.01.T01:three_prime_UTR | 25.0% |
| ! | CTAAGTAACAACAATATTGA+AGG | + | Chr4:59846005-59846024 | None:intergenic | 25.0% |
| ! | GAAACAATTGTTACAAATAG+TGG | - | Chr4:59846052-59846071 | MsG0480021561.01.T01:intron | 25.0% |
| ! | GGTGCTTAAAATTTATTATC+TGG | - | Chr4:59845685-59845704 | MsG0480021561.01.T01:intron | 25.0% |
| ! | TAGGGAGATATAGTTATTTA+GGG | - | Chr4:59846087-59846106 | MsG0480021561.01.T01:intron | 25.0% |
| ! | TATAAACTCTTCAATTCAAC+AGG | - | Chr4:59846333-59846352 | MsG0480021561.01.T01:CDS | 25.0% |
| ! | TGAAGTAAAAAAAGATTGGT+TGG | - | Chr4:59845168-59845187 | MsG0480021561.01.T01:three_prime_UTR | 25.0% |
| !! | ATTGATGACATAATATCATG+TGG | - | Chr4:59846498-59846517 | MsG0480021561.01.T01:five_prime_UTR | 25.0% |
| !! | CTTCAATATTGTTGTTACTT+AGG | - | Chr4:59846003-59846022 | MsG0480021561.01.T01:intron | 25.0% |
| !! | TATATTTTGCCATATAAGGT+AGG | + | Chr4:59845903-59845922 | None:intergenic | 25.0% |
| !!! | AACCAATCTTTTTTTACTTC+AGG | + | Chr4:59845169-59845188 | None:intergenic | 25.0% |
| !!! | GTGTTTTTGACTTTGTTTAA+TGG | - | Chr4:59845838-59845857 | MsG0480021561.01.T01:intron | 25.0% |
| !!! | TTTTTTGTAGGCTAAATTGA+TGG | - | Chr4:59846210-59846229 | MsG0480021561.01.T01:CDS | 25.0% |
| AAAAGAGATGTAATAGTAGG+TGG | - | Chr4:59846244-59846263 | MsG0480021561.01.T01:CDS | 30.0% | |
| AGGGAGATATAGTTATTTAG+GGG | - | Chr4:59846088-59846107 | MsG0480021561.01.T01:intron | 30.0% | |
| ATAAGTCATGCAAGAATAAG+AGG | + | Chr4:59845496-59845515 | None:intergenic | 30.0% | |
| ATAGTGGCAGTTACATAAAT+AGG | - | Chr4:59846068-59846087 | MsG0480021561.01.T01:intron | 30.0% | |
| ATCATCATCATCATCATCAT+CGG | + | Chr4:59845431-59845450 | None:intergenic | 30.0% | |
| ATTGCAAATGACAATCTTGA+AGG | - | Chr4:59845298-59845317 | MsG0480021561.01.T01:three_prime_UTR | 30.0% | |
| CACCATTAATGTAAAAATCC+AGG | + | Chr4:59845086-59845105 | None:intergenic | 30.0% | |
| TAAGTCATGCAAGAATAAGA+GGG | + | Chr4:59845495-59845514 | None:intergenic | 30.0% | |
| TAGTGGCAGTTACATAAATA+GGG | - | Chr4:59846069-59846088 | MsG0480021561.01.T01:intron | 30.0% | |
| TGAAAAGTTGAAATGGCAAA+TGG | - | Chr4:59846027-59846046 | MsG0480021561.01.T01:intron | 30.0% | |
| TGATGAAACATATTCTGACT+AGG | - | Chr4:59845450-59845469 | MsG0480021561.01.T01:intron | 30.0% | |
| TTAATGTAAAAATCCAGGGT+TGG | + | Chr4:59845081-59845100 | None:intergenic | 30.0% | |
| TTGTATTGTTCACGAATGTT+AGG | - | Chr4:59845557-59845576 | MsG0480021561.01.T01:intron | 30.0% | |
| ! | AACTTTAGAAGATAGTAAGC+CGG | - | Chr4:59845225-59845244 | MsG0480021561.01.T01:three_prime_UTR | 30.0% |
| ! | ACCCTGGATTTTTACATTAA+TGG | - | Chr4:59845081-59845100 | MsG0480021561.01.T01:three_prime_UTR | 30.0% |
| ! | ATCAAGCTTCATTGTTACTT+AGG | - | Chr4:59846141-59846160 | MsG0480021561.01.T01:CDS | 30.0% |
| ! | ATTGTGTGATTGATTCATCT+TGG | + | Chr4:59845267-59845286 | None:intergenic | 30.0% |
| !! | AGCACTTTTTGTTTCAGTTT+TGG | - | Chr4:59845745-59845764 | MsG0480021561.01.T01:intron | 30.0% |
| !! | CTTAGGTTGAAAAGTTGAAA+TGG | - | Chr4:59846020-59846039 | MsG0480021561.01.T01:intron | 30.0% |
| !! | GTGTGATGTATACTTGTTTT+TGG | + | Chr4:59845141-59845160 | None:intergenic | 30.0% |
| !!! | GTTTTATTTTATACCAACCC+TGG | - | Chr4:59845065-59845084 | MsG0480021561.01.T01:three_prime_UTR | 30.0% |
| AACTCTTCAATTCAACAGGA+AGG | - | Chr4:59846337-59846356 | MsG0480021561.01.T01:CDS | 35.0% | |
| ATCTTCTCAAACAAACCCAA+AGG | - | Chr4:59845637-59845656 | MsG0480021561.01.T01:intron | 35.0% | |
| ATGTAATAGTAGGTGGTCTT+TGG | - | Chr4:59846251-59846270 | MsG0480021561.01.T01:CDS | 35.0% | |
| GAGATGGATGAACTTTAGTT+TGG | - | Chr4:59846382-59846401 | MsG0480021561.01.T01:CDS | 35.0% | |
| TGATTTAGTTGGAGAAGTTG+AGG | - | Chr4:59845330-59845349 | MsG0480021561.01.T01:three_prime_UTR | 35.0% | |
| ! | ATTTTGCCATATAAGGTAGG+CGG | + | Chr4:59845900-59845919 | None:intergenic | 35.0% |
| ! | GCGTTGAAAAGTTGCTATTA+TGG | - | Chr4:59846273-59846292 | MsG0480021561.01.T01:CDS | 35.0% |
| ! | GTGATTGATTCATCTTGGTA+TGG | + | Chr4:59845262-59845281 | None:intergenic | 35.0% |
| !! | AATGGTTGTTTGTTGTGTTG+CGG | - | Chr4:59845856-59845875 | MsG0480021561.01.T01:intron | 35.0% |
| !! | ATTAATGGTGCTGCAAAGTT+TGG | - | Chr4:59845096-59845115 | MsG0480021561.01.T01:three_prime_UTR | 35.0% |
| !! | GGAAGTCTTGTTGATTTAGT+TGG | - | Chr4:59845319-59845338 | MsG0480021561.01.T01:three_prime_UTR | 35.0% |
| AAGGTAACCTCATCCAAGAA+AGG | + | Chr4:59845367-59845386 | None:intergenic | 40.0% | |
| CAGAGAGAAACAATTGCAAC+TGG | + | Chr4:59845949-59845968 | None:intergenic | 40.0% | |
| GGATGAGGTTACCTTTGAAT+GGG | - | Chr4:59845372-59845391 | MsG0480021561.01.T01:intron | 40.0% | |
| TCAATTCAACAGGAAGGAGA+GGG | - | Chr4:59846343-59846362 | MsG0480021561.01.T01:CDS | 40.0% | |
| TGGATGAGGTTACCTTTGAA+TGG | - | Chr4:59845371-59845390 | MsG0480021561.01.T01:intron | 40.0% | |
| TGGTATGGAACTTCTTTCTC+CGG | + | Chr4:59845247-59845266 | None:intergenic | 40.0% | |
| TGTTCACGAATGTTAGGTAG+AGG | - | Chr4:59845563-59845582 | MsG0480021561.01.T01:intron | 40.0% | |
| TTCAATTCAACAGGAAGGAG+AGG | - | Chr4:59846342-59846361 | MsG0480021561.01.T01:CDS | 40.0% | |
| !! | TGATAATGGTAACAGCGAGA+TGG | - | Chr4:59846366-59846385 | MsG0480021561.01.T01:CDS | 40.0% |
| AGCGCTAGGAGCAAATGTTT+GGG | - | Chr4:59846296-59846315 | MsG0480021561.01.T01:CDS | 45.0% | |
| ATACGGTCCTTTCTTGGATG+AGG | - | Chr4:59845357-59845376 | MsG0480021561.01.T01:three_prime_UTR | 45.0% | |
| CGAATGTTAGGTAGAGGTAG+AGG | - | Chr4:59845569-59845588 | MsG0480021561.01.T01:intron | 45.0% | |
| GTTGGCTGTGATTAAGACCA+AGG | - | Chr4:59845186-59845205 | MsG0480021561.01.T01:three_prime_UTR | 45.0% | |
| GTTTCGTGCGGTTGTTTAGA+GGG | - | Chr4:59845716-59845735 | MsG0480021561.01.T01:intron | 45.0% | |
| TTGAATTGAGCTTCTCGCCT+TGG | + | Chr4:59845206-59845225 | None:intergenic | 45.0% | |
| ! | AGTTGCTATTATGGAGCGCT+AGG | - | Chr4:59846282-59846301 | MsG0480021561.01.T01:CDS | 45.0% |
| ! | GGAGAAGTTGAGGAAGCATA+CGG | - | Chr4:59845340-59845359 | MsG0480021561.01.T01:three_prime_UTR | 45.0% |
| ! | TTTTGGCCGCCTACCTTATA+TGG | - | Chr4:59845891-59845910 | MsG0480021561.01.T01:intron | 45.0% |
| !!! | TGCGGCCAGTTTGTTGTTTT+TGG | - | Chr4:59845874-59845893 | MsG0480021561.01.T01:intron | 45.0% |
| CAGGAAGGAGAGGGTGATAA+TGG | - | Chr4:59846352-59846371 | MsG0480021561.01.T01:CDS | 50.0% | |
| CTGGTAGCATAGGTTTCGTG+CGG | - | Chr4:59845704-59845723 | MsG0480021561.01.T01:intron | 50.0% | |
| GAGCGCTAGGAGCAAATGTT+TGG | - | Chr4:59846295-59846314 | MsG0480021561.01.T01:CDS | 50.0% | |
| GGCGGCCAAAAACAACAAAC+TGG | + | Chr4:59845882-59845901 | None:intergenic | 50.0% | |
| GGTTTCGTGCGGTTGTTTAG+AGG | - | Chr4:59845715-59845734 | MsG0480021561.01.T01:intron | 50.0% | |
| TTAGGTAGAGGTAGAGGCAG+CGG | - | Chr4:59845575-59845594 | MsG0480021561.01.T01:intron | 50.0% | |
| TTGGCAGGGTTGACGATTCA+GGG | - | Chr4:59845006-59845025 | MsG0480021561.01.T01:three_prime_UTR | 50.0% | |
| ! | GGAAGCATACGGTCCTTTCT+TGG | - | Chr4:59845351-59845370 | MsG0480021561.01.T01:three_prime_UTR | 50.0% |
| CTTGGCAGGGTTGACGATTC+AGG | - | Chr4:59845005-59845024 | MsG0480021561.01.T01:three_prime_UTR | 55.0% | |
| GTGCGGTTGTTTAGAGGGTG+TGG | - | Chr4:59845721-59845740 | MsG0480021561.01.T01:intron | 55.0% | |
| TGGCAGGGTTGACGATTCAG+GGG | - | Chr4:59845007-59845026 | MsG0480021561.01.T01:three_prime_UTR | 55.0% | |
| AGAGGTAGAGGCAGCGGAAG+AGG | - | Chr4:59845581-59845600 | MsG0480021561.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 59844999 | 59846597 | 59844999 | ID=MsG0480021561.01;Name=MsG0480021561.01 |
| Chr4 | mRNA | 59844999 | 59846597 | 59844999 | ID=MsG0480021561.01.T01;Parent=MsG0480021561.01;Name=MsG0480021561.01.T01;_AED=0.21;_eAED=0.21;_QI=101|1|1|1|0|0.33|3|467|123 |
| Chr4 | exon | 59846125 | 59846597 | 59846125 | ID=MsG0480021561.01.T01:exon:21495;Parent=MsG0480021561.01.T01 |
| Chr4 | exon | 59845929 | 59846017 | 59845929 | ID=MsG0480021561.01.T01:exon:21496;Parent=MsG0480021561.01.T01 |
| Chr4 | exon | 59844999 | 59845376 | 59844999 | ID=MsG0480021561.01.T01:exon:21497;Parent=MsG0480021561.01.T01 |
| Chr4 | five_prime_UTR | 59846497 | 59846597 | 59846497 | ID=MsG0480021561.01.T01:five_prime_utr;Parent=MsG0480021561.01.T01 |
| Chr4 | CDS | 59846125 | 59846496 | 59846125 | ID=MsG0480021561.01.T01:cds;Parent=MsG0480021561.01.T01 |
| Chr4 | three_prime_UTR | 59845929 | 59846017 | 59845929 | ID=MsG0480021561.01.T01:three_prime_utr;Parent=MsG0480021561.01.T01 |
| Chr4 | three_prime_UTR | 59844999 | 59845376 | 59844999 | ID=MsG0480021561.01.T01:three_prime_utr;Parent=MsG0480021561.01.T01 |
| Gene Sequence |
| Protein sequence |
