AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000184.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000184.01.T01 MTR_1g021875 82.286 350 32 3 49 397 1 321 4.04e-154 438
MsG0180000184.01.T01 MTR_8g015620 68.485 165 45 4 234 396 529 688 4.12e-55 196
MsG0180000184.01.T01 MTR_8g015620 65.333 75 25 1 37 111 106 179 8.50e-24 104
MsG0180000184.01.T01 MTR_1g021885 59.722 72 25 2 1 68 1 72 3.58e-16 77.0
MsG0180000184.01.T01 MTR_8g015610 62.500 72 24 1 325 396 409 477 2.64e-14 75.5
MsG0180000184.01.T01 MTR_8g015610 80.000 45 7 1 1 43 1 45 1.81e-13 72.8
MsG0180000184.01.T01 MTR_8g015600 82.222 45 6 1 1 43 1 45 3.17e-14 74.7
MsG0180000184.01.T01 MTR_8g015600 82.222 45 6 1 1 43 1 45 3.33e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000184.01.T01 AT3G21290 49.333 75 38 0 37 111 131 205 5.55e-16 80.5

Find 93 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGATTGATTTAGAAAT+TGG 0.182727 1:+2577905 MsG0180000184.01.T01:CDS
AATACAACCTCAAGACTAAA+AGG 0.221162 1:-2583016 None:intergenic
TACTACTTAATTTCTGTTAC+AGG 0.229423 1:-2582949 None:intergenic
AATGGTTTGCCTGTTGAATC+TGG 0.261134 1:+2580382 MsG0180000184.01.T01:CDS
TTGTATAATCTTTGCGCTCC+TGG 0.276804 1:-2582644 None:intergenic
CAGATTTCTGCTTTGTGCTC+TGG 0.291560 1:-2582396 None:intergenic
ATCTGAGGAACTCCCTAAAA+TGG 0.323801 1:+2582539 MsG0180000184.01.T01:CDS
GATACATATGTTTAAATGTA+TGG 0.346101 1:+2582874 MsG0180000184.01.T01:three_prime_UTR
TGTATAATCTTTGCGCTCCT+GGG 0.347101 1:-2582643 None:intergenic
ACTCTTCATGGGCAGGTGTT+AGG 0.364413 1:-2582080 None:intergenic
TTGACCCGTGAGTCATTCTA+TGG 0.374563 1:+2582852 MsG0180000184.01.T01:three_prime_UTR
CTTGAGGTTGTATTTAAACT+TGG 0.378464 1:+2583025 MsG0180000184.01.T01:three_prime_UTR
CAGCATCAAAGTGGTGTAGA+TGG 0.384070 1:+2580358 MsG0180000184.01.T01:CDS
AGAAATCTGAAGGAACAAAA+AGG 0.400328 1:+2582790 MsG0180000184.01.T01:CDS
TATCTAAAGGTAAACATATG+AGG 0.400818 1:+2582742 MsG0180000184.01.T01:CDS
CTCTTCCATCAGCGAGGGAT+TGG 0.401499 1:+2582329 MsG0180000184.01.T01:CDS
CTGTTGAATCTGGGTGTGCC+TGG 0.408185 1:+2580392 MsG0180000184.01.T01:CDS
TCTGATCATGAAACTCTTCA+TGG 0.408689 1:-2582092 None:intergenic
AGTGATCTTACAACGTATCT+TGG 0.410668 1:+2580420 MsG0180000184.01.T01:CDS
ATTCCAGTAAAATCTCTTGA+TGG 0.413383 1:+2582441 MsG0180000184.01.T01:CDS
TAAGAGTGTGATAACAAGTA+AGG 0.435401 1:-2580543 None:intergenic
TGGACTTGGAGAACTTCAAT+TGG 0.441003 1:+2577925 MsG0180000184.01.T01:CDS
GTGTGGCTTGAGATTGTGTT+CGG 0.447874 1:-2580485 None:intergenic
CAGGCACACCCAGATTCAAC+AGG 0.452283 1:-2580391 None:intergenic
CAAAGTGGTGTAGATGGAAA+TGG 0.454103 1:+2580364 MsG0180000184.01.T01:CDS
TTTGAATTTACTGTAGGCAT+TGG 0.454138 1:+2582919 MsG0180000184.01.T01:three_prime_UTR
TAAGGAGTGTATAACAAGTA+AGG 0.456960 1:-2580525 None:intergenic
GTTCAGATTTACATGGTTGA+GGG 0.460325 1:+2580310 MsG0180000184.01.T01:intron
TGATCAGACATTTGCTCCAC+AGG 0.463827 1:+2582137 MsG0180000184.01.T01:CDS
AGTTCAGATTTACATGGTTG+AGG 0.468878 1:+2580309 MsG0180000184.01.T01:intron
AGGCATCACTTGGTTGTGAT+TGG 0.474545 1:+2577881 MsG0180000184.01.T01:CDS
TTCCATCAGCGAGGGATTGG+AGG 0.477699 1:+2582332 MsG0180000184.01.T01:CDS
ATTGATTTAGAAATTGGACT+TGG 0.482224 1:+2577911 MsG0180000184.01.T01:CDS
GCAGGCAGCTCCAGTGCTAG+TGG 0.489009 1:+2582186 MsG0180000184.01.T01:CDS
CGAACAATCTAACAGCTTTG+AGG 0.489350 1:+2582716 MsG0180000184.01.T01:CDS
TCAATGTTGCTGCCGACCAC+TGG 0.491799 1:+2577806 None:intergenic
ATGGTTTGCCTGTTGAATCT+GGG 0.491828 1:+2580383 MsG0180000184.01.T01:CDS
CAATCCCTCGCTGATGGAAG+AGG 0.507485 1:-2582328 None:intergenic
TTGTAAGATCACTTTGCGCC+AGG 0.512310 1:-2580410 None:intergenic
GATTATAGTGACGGTAGGGC+AGG 0.515021 1:+2582168 MsG0180000184.01.T01:CDS
GTAGAAGTTCCGATGGATCA+TGG 0.515239 1:+2582274 MsG0180000184.01.T01:CDS
TTTATATGACTCACGGGTCA+AGG 0.515592 1:-2582827 None:intergenic
TTGCTGCCGACCACTGGAGT+AGG 0.520582 1:+2577812 MsG0180000184.01.T01:CDS
GTGAAGTCAAAGATAGCTCT+AGG 0.521233 1:+2582691 MsG0180000184.01.T01:CDS
GAATGAGGTTGATGAGAAGC+AGG 0.521334 1:+2582476 MsG0180000184.01.T01:CDS
TCATGAAACTCTTCATGGGC+AGG 0.521376 1:-2582087 None:intergenic
ACTATCACTTCCACTAGCAC+TGG 0.522218 1:-2582196 None:intergenic
ACCCTCCAATCCCTCGCTGA+TGG 0.524742 1:-2582334 None:intergenic
ACTACTTAATTTCTGTTACA+GGG 0.531047 1:-2582948 None:intergenic
CTACTTAATTTCTGTTACAG+GGG 0.533851 1:-2582947 None:intergenic
AACATTGATGAGAAATCTGA+AGG 0.543296 1:+2582780 MsG0180000184.01.T01:CDS
ATACAACCTCAAGACTAAAA+GGG 0.543719 1:-2583015 None:intergenic
AGCAGAAGTAGAAGTTCCGA+TGG 0.544025 1:+2582267 MsG0180000184.01.T01:CDS
TCTTGTCAAAATGCGGTCAC+AGG 0.545559 1:+2580459 MsG0180000184.01.T01:CDS
ACAAGCACAGAGGCATCACT+TGG 0.549638 1:+2577871 MsG0180000184.01.T01:CDS
ATGTTGATTCATTGCAAATG+AGG 0.552288 1:-2583055 None:intergenic
ATACATATGTTTAAATGTAT+GGG 0.554799 1:+2582875 MsG0180000184.01.T01:three_prime_UTR
GAAAGTAACAGTAGCGACAG+TGG 0.556540 1:+2582219 MsG0180000184.01.T01:CDS
GTCAAGGTTTATATGACTCA+CGG 0.558343 1:-2582834 None:intergenic
ATAGAATGACTCACGGGTCA+AGG 0.564574 1:-2582850 None:intergenic
ATCTAAAGGTAAACATATGA+GGG 0.565450 1:+2582743 MsG0180000184.01.T01:CDS
AGCTTTGAGGAACTATCTAA+AGG 0.566358 1:+2582729 MsG0180000184.01.T01:CDS
CTGATCATGAAACTCTTCAT+GGG 0.568087 1:-2582091 None:intergenic
TGGAAAATCTACGCAGAATG+AGG 0.569803 1:+2582461 MsG0180000184.01.T01:CDS
GGAAGGAGTTCAGATTTACA+TGG 0.572256 1:+2580303 MsG0180000184.01.T01:intron
AGCGACAGTGGAAGTGACAG+TGG 0.584113 1:+2582231 MsG0180000184.01.T01:CDS
TCCATCAGCGAGGGATTGGA+GGG 0.593348 1:+2582333 MsG0180000184.01.T01:CDS
ATATGATTATCAACAGCCCC+AGG 0.594026 1:+2582626 MsG0180000184.01.T01:CDS
TTCATCCCTACTCCAGTGGT+CGG 0.595067 1:-2577818 None:intergenic
TCAAGGTTTATATGACTCAC+GGG 0.595147 1:-2582833 None:intergenic
AAAATATGCAGAAGAGACAA+AGG 0.596330 1:+2582596 MsG0180000184.01.T01:CDS
ACTCTCACTCCATGATCCAT+CGG 0.596420 1:-2582283 None:intergenic
GTATAATCTTTGCGCTCCTG+GGG 0.596744 1:-2582642 None:intergenic
TTCATTGCAAATGAGGCACA+AGG 0.613892 1:-2583048 None:intergenic
AGGAGCGCAAAGATTATACA+AGG 0.614784 1:+2582646 MsG0180000184.01.T01:CDS
TGCTGCCGACCACTGGAGTA+GGG 0.617548 1:+2577813 MsG0180000184.01.T01:CDS
CTAAGAATCTTGTCAAAATG+CGG 0.624992 1:+2580452 MsG0180000184.01.T01:CDS
TGTATCCATAGAATGACTCA+CGG 0.630385 1:-2582857 None:intergenic
GTATCCATAGAATGACTCAC+GGG 0.640052 1:-2582856 None:intergenic
GGGATTGGAGGGTACTGATG+AGG 0.640194 1:+2582344 MsG0180000184.01.T01:CDS
GATCAGACATTTGCTCCACA+TGG 0.640613 1:+2582108 MsG0180000184.01.T01:CDS
AGCTTTGAACAGCATCAAAG+TGG 0.644455 1:+2580349 MsG0180000184.01.T01:CDS
GATACCTCTTCCATCAGCGA+GGG 0.647002 1:+2582324 MsG0180000184.01.T01:CDS
CAGACATTTGCTCCACAGGG+AGG 0.660250 1:+2582141 MsG0180000184.01.T01:CDS
ATAATTCATCCCTACTCCAG+TGG 0.662386 1:-2577822 None:intergenic
TGGAGTGAGAGTAGTAGTGA+CGG 0.666612 1:+2582294 MsG0180000184.01.T01:CDS
GATCAGACATTTGCTCCACA+GGG 0.681606 1:+2582138 MsG0180000184.01.T01:CDS
AGTAGGGATGAATTATGCAA+TGG 0.690983 1:+2577829 MsG0180000184.01.T01:CDS
GTCTGATCATGAAGTCCATG+TGG 0.692214 1:-2582123 None:intergenic
TGATACCTCTTCCATCAGCG+AGG 0.704191 1:+2582323 MsG0180000184.01.T01:CDS
CTATAATCAAAACCTCCCTG+TGG 0.708081 1:-2582153 None:intergenic
AGTGTGTGACAATACTTGTG+TGG 0.743585 1:-2580502 None:intergenic
GTTCTATTCAACAAGCACAG+AGG 0.768031 1:+2577861 MsG0180000184.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTAAATCTAGATT+CGG - Chr1:2580006-2580025 None:intergenic 10.0%
!! AGTATTATATTAATGATAAT+CGG + Chr1:2580027-2580046 MsG0180000184.01.T01:intron 10.0%
!! TTTATATTAGGTTTATATAT+TGG - Chr1:2579726-2579745 None:intergenic 10.0%
!!! ATCTTAATATATTTTTTAGA+TGG + Chr1:2580705-2580724 MsG0180000184.01.T01:intron 10.0%
!!! ATTTTGGTAAAATTTATATT+AGG - Chr1:2579738-2579757 None:intergenic 10.0%
!! AAATATTTAAATCTAGATTC+GGG - Chr1:2580005-2580024 None:intergenic 15.0%
!! AAATTTGATGTAAAACTTAA+GGG + Chr1:2579457-2579476 MsG0180000184.01.T01:intron 15.0%
!! ACCAATAATTAAAATGATTT+GGG - Chr1:2578511-2578530 None:intergenic 15.0%
!! ACTTTATGTGAAAATAAAAT+CGG - Chr1:2581720-2581739 None:intergenic 15.0%
!! ATACATATGTTTAAATGTAT+GGG + Chr1:2582875-2582894 MsG0180000184.01.T01:three_prime_UTR 15.0%
!! GTGAAAATTTAATATTATTC+AGG - Chr1:2579053-2579072 None:intergenic 15.0%
!!! ATATTAATATTATCCTCTTT+TGG - Chr1:2579912-2579931 None:intergenic 15.0%
!!! ATTTTTCTAATATTTGAGTT+AGG + Chr1:2578445-2578464 MsG0180000184.01.T01:intron 15.0%
!!! TATTAATATTATCCTCTTTT+GGG - Chr1:2579911-2579930 None:intergenic 15.0%
!!! TTTAATTTCTTGATAAAAGA+TGG + Chr1:2579141-2579160 MsG0180000184.01.T01:intron 15.0%
!!! TTTTTCTTGTTAATTTATCA+CGG + Chr1:2580627-2580646 MsG0180000184.01.T01:intron 15.0%
!! AAATTAACAAGAAAAAGGAT+AGG - Chr1:2580623-2580642 None:intergenic 20.0%
!! AATGGCAGAATATAAATAAT+AGG + Chr1:2581244-2581263 MsG0180000184.01.T01:intron 20.0%
!! AATTAACAAGAAAAAGGATA+GGG - Chr1:2580622-2580641 None:intergenic 20.0%
!! ACAATGGAAATTAATATTGA+TGG - Chr1:2581439-2581458 None:intergenic 20.0%
!! AGAAAAATGTTGTTAAAAGT+TGG + Chr1:2578082-2578101 MsG0180000184.01.T01:intron 20.0%
!! ATCAATATTAATTTCCATTG+TGG + Chr1:2581438-2581457 MsG0180000184.01.T01:intron 20.0%
!! CAAATTTGATGTAAAACTTA+AGG + Chr1:2579456-2579475 MsG0180000184.01.T01:intron 20.0%
!! CATTAAATCAAATATGTTCA+TGG + Chr1:2578412-2578431 MsG0180000184.01.T01:intron 20.0%
!! CATTAATATAATACTTGCAA+CGG - Chr1:2580065-2580084 None:intergenic 20.0%
!! CCAATAATTAAAATGATTTG+GGG - Chr1:2578510-2578529 None:intergenic 20.0%
!! GACCAATAATTAAAATGATT+TGG - Chr1:2578512-2578531 None:intergenic 20.0%
!! GATACATATGTTTAAATGTA+TGG + Chr1:2582874-2582893 MsG0180000184.01.T01:three_prime_UTR 20.0%
!! GTGATAAATTAACAAGAAAA+AGG - Chr1:2580628-2580647 None:intergenic 20.0%
!! TATATATTCATCATGAACAT+GGG - Chr1:2578534-2578553 None:intergenic 20.0%
!! TGAAAATAGTTTATAAAGAG+TGG + Chr1:2579650-2579669 MsG0180000184.01.T01:intron 20.0%
!! TTACATATTTATTGCATGTT+TGG - Chr1:2579808-2579827 None:intergenic 20.0%
!! TTATATATTCATCATGAACA+TGG - Chr1:2578535-2578554 None:intergenic 20.0%
!!! AAATACAGTTCTAAAACATT+AGG - Chr1:2579399-2579418 None:intergenic 20.0%
!!! ATTAATATTATCCTCTTTTG+GGG - Chr1:2579910-2579929 None:intergenic 20.0%
!!! ATTAGCTTATTTTAAGTTTG+AGG + Chr1:2582976-2582995 MsG0180000184.01.T01:three_prime_UTR 20.0%
!!! GTTAATTGTCTTATTGTTAT+TGG - Chr1:2581530-2581549 None:intergenic 20.0%
!!! GTTGAGAACATAATTTTATT+TGG + Chr1:2578656-2578675 MsG0180000184.01.T01:intron 20.0%
!!! TAATGATTTTTATTTTGCTC+AGG + Chr1:2580921-2580940 MsG0180000184.01.T01:intron 20.0%
!!! TATATTTTTTAGATGGTAAG+TGG + Chr1:2580712-2580731 MsG0180000184.01.T01:intron 20.0%
!!! TTTTGGAAAACAATCAAATT+AGG - Chr1:2580123-2580142 None:intergenic 20.0%
!!! TTTTTATTGTAACATTTCCT+AGG + Chr1:2581366-2581385 MsG0180000184.01.T01:intron 20.0%
! AAAGTAACAAGAACATAAAG+AGG + Chr1:2579571-2579590 MsG0180000184.01.T01:intron 25.0%
! AATTATTATTGTGATCTTCG+AGG - Chr1:2578260-2578279 None:intergenic 25.0%
! ACACAGAATTTCATACAAAA+AGG - Chr1:2580232-2580251 None:intergenic 25.0%
! ACTACTTAATTTCTGTTACA+GGG - Chr1:2582951-2582970 None:intergenic 25.0%
! AGTGCACCTTAAATAAATTA+TGG - Chr1:2581784-2581803 None:intergenic 25.0%
! ATCTAAAGGTAAACATATGA+GGG + Chr1:2582743-2582762 MsG0180000184.01.T01:CDS 25.0%
! ATTATTATTGTGATCTTCGA+GGG - Chr1:2578259-2578278 None:intergenic 25.0%
! CTAGTGTTAAAAGTCTAAAT+AGG + Chr1:2581652-2581671 MsG0180000184.01.T01:intron 25.0%
! CTTCAATCATAGAAATTGTT+AGG - Chr1:2579187-2579206 None:intergenic 25.0%
! CTTCTAAATGAATTGATTAG+TGG + Chr1:2581187-2581206 MsG0180000184.01.T01:intron 25.0%
! GTGCACCTTAAATAAATTAT+GGG - Chr1:2581783-2581802 None:intergenic 25.0%
! TAAATAGTCTAATAGCTACA+TGG + Chr1:2581937-2581956 MsG0180000184.01.T01:intron 25.0%
! TAAATGAATTGATTAGTGGT+GGG + Chr1:2581191-2581210 MsG0180000184.01.T01:intron 25.0%
! TACTACTTAATTTCTGTTAC+AGG - Chr1:2582952-2582971 None:intergenic 25.0%
! TATCTAAAGGTAAACATATG+AGG + Chr1:2582742-2582761 MsG0180000184.01.T01:CDS 25.0%
! TGAAAACATCAAACAAAAGA+TGG - Chr1:2580209-2580228 None:intergenic 25.0%
! TTGAATTTAAAGAGAATGAG+AGG - Chr1:2582026-2582045 None:intergenic 25.0%
!! AAAAAAGTTTGTCACGTTTT+TGG - Chr1:2580140-2580159 None:intergenic 25.0%
!! AGACAATATTTTCAAAGACA+TGG - Chr1:2580578-2580597 None:intergenic 25.0%
!! AGCTGTAATTTTATATTTGG+AGG - Chr1:2578316-2578335 None:intergenic 25.0%
!! ATTGATTTAGAAATTGGACT+TGG + Chr1:2577911-2577930 MsG0180000184.01.T01:CDS 25.0%
!! ATTGGTAATACTACAGTAAT+TGG + Chr1:2577943-2577962 MsG0180000184.01.T01:intron 25.0%
!! GAAGAGATTGATTTAGAAAT+TGG + Chr1:2577905-2577924 MsG0180000184.01.T01:CDS 25.0%
!! GACAGCTGTAATTTTATATT+TGG - Chr1:2578319-2578338 None:intergenic 25.0%
!! TATTCTGTTTAGAGTTTGTT+TGG + Chr1:2578848-2578867 MsG0180000184.01.T01:intron 25.0%
!! TCTCATTTTGAATTTACTGT+AGG + Chr1:2582913-2582932 MsG0180000184.01.T01:three_prime_UTR 25.0%
!! TTTCTGATCAAACATGATTT+TGG - Chr1:2579754-2579773 None:intergenic 25.0%
!! TTTTCTAACTCTATCAGAAA+TGG - Chr1:2582580-2582599 None:intergenic 25.0%
!!! AAGGAGTTTGTTTTATGAAA+GGG + Chr1:2582665-2582684 MsG0180000184.01.T01:CDS 25.0%
!!! ATAATAGGATTAGCTATTCT+TGG + Chr1:2581259-2581278 MsG0180000184.01.T01:intron 25.0%
!!! ATTCTAAAGCTACACTAAAA+AGG + Chr1:2579233-2579252 MsG0180000184.01.T01:intron 25.0%
!!! CCCCAAATCATTTTAATTAT+TGG + Chr1:2578507-2578526 MsG0180000184.01.T01:intron 25.0%
!!! CTTATGATGGACTAAAAAAT+GGG + Chr1:2579843-2579862 MsG0180000184.01.T01:intron 25.0%
!!! TAATAGGATTAGCTATTCTT+GGG + Chr1:2581260-2581279 MsG0180000184.01.T01:intron 25.0%
!!! TTCTAAAGCTACACTAAAAA+GGG + Chr1:2579234-2579253 MsG0180000184.01.T01:intron 25.0%
AAAATATGCAGAAGAGACAA+AGG + Chr1:2582596-2582615 MsG0180000184.01.T01:CDS 30.0%
AACATTGATGAGAAATCTGA+AGG + Chr1:2582780-2582799 MsG0180000184.01.T01:CDS 30.0%
AATACAACCTCAAGACTAAA+AGG - Chr1:2583019-2583038 None:intergenic 30.0%
AATTAAATAGTGCGCAGTTA+AGG - Chr1:2579128-2579147 None:intergenic 30.0%
ACAGAATAACTTCCATAAAC+AGG - Chr1:2578836-2578855 None:intergenic 30.0%
AGAAATCTGAAGGAACAAAA+AGG + Chr1:2582790-2582809 MsG0180000184.01.T01:CDS 30.0%
AGAATAACTTCCATAAACAG+GGG - Chr1:2578834-2578853 None:intergenic 30.0%
AGATGTCAAAAAGATGCATT+TGG + Chr1:2578567-2578586 MsG0180000184.01.T01:intron 30.0%
AGTGGTCAATAAAAATGGTA+AGG - Chr1:2578744-2578763 None:intergenic 30.0%
ATACAACCTCAAGACTAAAA+GGG - Chr1:2583018-2583037 None:intergenic 30.0%
ATATATAAGAATACCATCGC+AGG + Chr1:2580169-2580188 MsG0180000184.01.T01:intron 30.0%
ATCAATCTCTGTATCTGTTA+TGG + Chr1:2578977-2578996 MsG0180000184.01.T01:intron 30.0%
ATTATAAAGTAACCGTTGCA+TGG + Chr1:2580050-2580069 MsG0180000184.01.T01:intron 30.0%
ATTATTGTGGAATATGGTAG+GGG + Chr1:2581095-2581114 MsG0180000184.01.T01:intron 30.0%
ATTCCAGTAAAATCTCTTGA+TGG + Chr1:2582441-2582460 MsG0180000184.01.T01:CDS 30.0%
CAGAATAACTTCCATAAACA+GGG - Chr1:2578835-2578854 None:intergenic 30.0%
CTAAATGAATTGATTAGTGG+TGG + Chr1:2581190-2581209 MsG0180000184.01.T01:intron 30.0%
CTAAGAATCTTGTCAAAATG+CGG + Chr1:2580452-2580471 MsG0180000184.01.T01:CDS 30.0%
CTACTTAATTTCTGTTACAG+GGG - Chr1:2582950-2582969 None:intergenic 30.0%
CTTGAGGTTGTATTTAAACT+TGG + Chr1:2583025-2583044 MsG0180000184.01.T01:three_prime_UTR 30.0%
GATTATTGTGGAATATGGTA+GGG + Chr1:2581094-2581113 MsG0180000184.01.T01:intron 30.0%
GTTTACATTGAAAGGAGATA+AGG + Chr1:2579625-2579644 MsG0180000184.01.T01:intron 30.0%
TAACGAAAAAAAAGGGTTCT+AGG - Chr1:2581861-2581880 None:intergenic 30.0%
TATTGAAAAAGACTCATCTG+AGG + Chr1:2582524-2582543 MsG0180000184.01.T01:CDS 30.0%
TCAAACAAAAGATGGTAGAT+AGG - Chr1:2580201-2580220 None:intergenic 30.0%
TGATTATTGTGGAATATGGT+AGG + Chr1:2581093-2581112 MsG0180000184.01.T01:intron 30.0%
TGCAAAGTGGTCAATAAAAA+TGG - Chr1:2578749-2578768 None:intergenic 30.0%
TGCACACTGAAATTTCAAAA+TGG - Chr1:2579087-2579106 None:intergenic 30.0%
TGCACTGTAACGAAAAAAAA+GGG - Chr1:2581868-2581887 None:intergenic 30.0%
TGTTAATGAGAACATACACA+TGG + Chr1:2580665-2580684 MsG0180000184.01.T01:intron 30.0%
TTAACTCATCCATACAAAAC+CGG - Chr1:2579701-2579720 None:intergenic 30.0%
TTGGGCCCATAATTTATTTA+AGG + Chr1:2581775-2581794 MsG0180000184.01.T01:intron 30.0%
TTTCAAAATGGCACTAAACT+AGG - Chr1:2579075-2579094 None:intergenic 30.0%
TTTGAATTTACTGTAGGCAT+TGG + Chr1:2582919-2582938 MsG0180000184.01.T01:three_prime_UTR 30.0%
! AAAAGATGGTTGCATTGTTT+TGG + Chr1:2579155-2579174 MsG0180000184.01.T01:intron 30.0%
! AAAGATGGTTGCATTGTTTT+GGG + Chr1:2579156-2579175 MsG0180000184.01.T01:intron 30.0%
! AAAGTCTTTTACAGGTCAAA+TGG - Chr1:2581609-2581628 None:intergenic 30.0%
! ACTCGCATTTATAACTTTTG+AGG + Chr1:2580764-2580783 MsG0180000184.01.T01:intron 30.0%
! ATCAAGAGATTTTACTGGAA+TGG - Chr1:2582442-2582461 None:intergenic 30.0%
! CTCGCATTTATAACTTTTGA+GGG + Chr1:2580765-2580784 MsG0180000184.01.T01:intron 30.0%
! GTTAGGTTATGATTTTCTTC+AGG - Chr1:2582066-2582085 None:intergenic 30.0%
! TAAGAGTGTGATAACAAGTA+AGG - Chr1:2580546-2580565 None:intergenic 30.0%
! TAAGGAGTGTATAACAAGTA+AGG - Chr1:2580528-2580547 None:intergenic 30.0%
! TCAAGAGATTTTACTGGAAT+GGG - Chr1:2582441-2582460 None:intergenic 30.0%
! TTTCCATCAAGAGATTTTAC+TGG - Chr1:2582447-2582466 None:intergenic 30.0%
! TTTTCACATAAAGTTAACCG+TGG + Chr1:2581726-2581745 MsG0180000184.01.T01:intron 30.0%
!! ATGTTGATTCATTGCAAATG+AGG - Chr1:2583058-2583077 None:intergenic 30.0%
!! GCTTATGATGGACTAAAAAA+TGG + Chr1:2579842-2579861 MsG0180000184.01.T01:intron 30.0%
!! TTTTGATTATAGTGACGGTA+GGG + Chr1:2582164-2582183 MsG0180000184.01.T01:CDS 30.0%
!!! AGGAGTTTGTTTTATGAAAG+GGG + Chr1:2582666-2582685 MsG0180000184.01.T01:CDS 30.0%
!!! CAAGGAGTTTGTTTTATGAA+AGG + Chr1:2582664-2582683 MsG0180000184.01.T01:CDS 30.0%
!!! GCTTAGTTTTAAAGTCTTGA+CGG + Chr1:2580864-2580883 MsG0180000184.01.T01:intron 30.0%
!!! TTTTTACCCTTTTAGTCTTG+AGG + Chr1:2583009-2583028 MsG0180000184.01.T01:three_prime_UTR 30.0%
AAACATCGGAGAAATCCTAA+CGG + Chr1:2578201-2578220 MsG0180000184.01.T01:intron 35.0%
AAATTAGGTACACCATGCAA+CGG - Chr1:2580108-2580127 None:intergenic 35.0%
AACCCAAGGTTTACATTGAA+AGG + Chr1:2579617-2579636 MsG0180000184.01.T01:intron 35.0%
AAGAACATAAAGAGGTTGTG+AGG + Chr1:2579579-2579598 MsG0180000184.01.T01:intron 35.0%
AATTTATCACGGCTTGCATT+TGG + Chr1:2580638-2580657 MsG0180000184.01.T01:intron 35.0%
ACAGATACAGAGATTGATAG+AGG - Chr1:2578975-2578994 None:intergenic 35.0%
AGACGCTTATTGTCTTCAAT+CGG + Chr1:2578290-2578309 MsG0180000184.01.T01:intron 35.0%
AGCTGTAATGTCAAAAACAG+TGG + Chr1:2579205-2579224 MsG0180000184.01.T01:intron 35.0%
AGTAGGGATGAATTATGCAA+TGG + Chr1:2577829-2577848 MsG0180000184.01.T01:CDS 35.0%
AGTGATCTTACAACGTATCT+TGG + Chr1:2580420-2580439 MsG0180000184.01.T01:CDS 35.0%
AGTTCAGATTTACATGGTTG+AGG + Chr1:2580309-2580328 MsG0180000184.01.T01:intron 35.0%
CAGATCTTCTCTAAATTCCA+AGG - Chr1:2581337-2581356 None:intergenic 35.0%
CTCCTTTCAATGTAAACCTT+GGG - Chr1:2579622-2579641 None:intergenic 35.0%
CTGATCATGAAACTCTTCAT+GGG - Chr1:2582094-2582113 None:intergenic 35.0%
CTGTGGATTTCAATTAGTAG+CGG + Chr1:2579948-2579967 MsG0180000184.01.T01:intron 35.0%
GAAGGAACAAAAAGGTTGAA+AGG + Chr1:2582798-2582817 MsG0180000184.01.T01:CDS 35.0%
GCATGTTTGGATACACAATA+TGG - Chr1:2579795-2579814 None:intergenic 35.0%
GCTGTAATGTCAAAAACAGT+GGG + Chr1:2579206-2579225 MsG0180000184.01.T01:intron 35.0%
GGTGTTTCCAGATAATTCTA+TGG + Chr1:2578677-2578696 MsG0180000184.01.T01:intron 35.0%
GTCAAGGTTTATATGACTCA+CGG - Chr1:2582837-2582856 None:intergenic 35.0%
GTGCACTGTAACGAAAAAAA+AGG - Chr1:2581869-2581888 None:intergenic 35.0%
GTGTTAAATTACTCGTGTCT+AGG + Chr1:2580984-2581003 MsG0180000184.01.T01:intron 35.0%
GTTCAGATTTACATGGTTGA+GGG + Chr1:2580310-2580329 MsG0180000184.01.T01:intron 35.0%
TAAATTACTCGTGTCTAGGT+TGG + Chr1:2580988-2581007 MsG0180000184.01.T01:intron 35.0%
TAAGAGGGAACAAGGAAAAA+TGG - Chr1:2578710-2578729 None:intergenic 35.0%
TATAGAACAGTACAGTAGAG+CGG - Chr1:2581473-2581492 None:intergenic 35.0%
TCAAGGTTTATATGACTCAC+GGG - Chr1:2582836-2582855 None:intergenic 35.0%
TCGTATGCCATAGAATTATC+TGG - Chr1:2578687-2578706 None:intergenic 35.0%
TCTCCTTTCAATGTAAACCT+TGG - Chr1:2579623-2579642 None:intergenic 35.0%
TCTGATCATGAAACTCTTCA+TGG - Chr1:2582095-2582114 None:intergenic 35.0%
TGAAATTGGGGTGATTATTG+TGG + Chr1:2581082-2581101 MsG0180000184.01.T01:intron 35.0%
TGACCTGTAAAAGACTTTCT+TGG + Chr1:2581611-2581630 MsG0180000184.01.T01:intron 35.0%
TGATCAAATGTTGAATGCTG+CGG - Chr1:2578629-2578648 None:intergenic 35.0%
TGCTATGTCTGTAGAGAATT+TGG + Chr1:2578174-2578193 MsG0180000184.01.T01:intron 35.0%
TGGTACGAAGAAAAAACAAC+CGG - Chr1:2580266-2580285 None:intergenic 35.0%
TGTATCCATAGAATGACTCA+CGG - Chr1:2582860-2582879 None:intergenic 35.0%
TGTTGTTAAAAGTTGGAGTG+AGG + Chr1:2578089-2578108 MsG0180000184.01.T01:intron 35.0%
TTATTGTGGAATATGGTAGG+GGG + Chr1:2581096-2581115 MsG0180000184.01.T01:intron 35.0%
TTCACTGTGAAGCATGTATT+TGG - Chr1:2579982-2580001 None:intergenic 35.0%
TTCTGTGTAGTTTGAAAGTC+CGG + Chr1:2580244-2580263 MsG0180000184.01.T01:intron 35.0%
! ACACAATATGGTGTCAAATG+TGG - Chr1:2579783-2579802 None:intergenic 35.0%
! AGATTTTACTGGAATGGGTA+AGG - Chr1:2582436-2582455 None:intergenic 35.0%
! CACAATATGGTGTCAAATGT+GGG - Chr1:2579782-2579801 None:intergenic 35.0%
! CACATAAGGTTTTCTGTGAA+TGG + Chr1:2581886-2581905 MsG0180000184.01.T01:intron 35.0%
! CTAGTATGCACGTTTTTGAA+GGG - Chr1:2581061-2581080 None:intergenic 35.0%
! GAACCAAGAAAGTCTTTTAC+AGG - Chr1:2581617-2581636 None:intergenic 35.0%
! GAGAGATATGTTGCTTATGA+TGG + Chr1:2579830-2579849 MsG0180000184.01.T01:intron 35.0%
! TGGCCAACCTTTTATGTTAA+CGG - Chr1:2578346-2578365 None:intergenic 35.0%
! TTTTCGTTACAGTGCACATA+AGG + Chr1:2581872-2581891 MsG0180000184.01.T01:intron 35.0%
!! AGCTTTGAGGAACTATCTAA+AGG + Chr1:2582729-2582748 MsG0180000184.01.T01:CDS 35.0%
!! CTTGGGTGTAGATTGATTTT+AGG + Chr1:2581277-2581296 MsG0180000184.01.T01:intron 35.0%
!! TAGTATGCACGTTTTTGAAG+GGG - Chr1:2581060-2581079 None:intergenic 35.0%
!! TCAGTGACAGAATCTAGTTT+TGG + Chr1:2578773-2578792 MsG0180000184.01.T01:intron 35.0%
!! TTCAATTAGTAGCGGATTTG+CGG + Chr1:2579956-2579975 MsG0180000184.01.T01:intron 35.0%
!!! ACTGCAAGTGTGTCTTTTTT+GGG + Chr1:2581757-2581776 MsG0180000184.01.T01:intron 35.0%
!!! CAGTGACAGAATCTAGTTTT+GGG + Chr1:2578774-2578793 MsG0180000184.01.T01:intron 35.0%
!!! CTCAGTGAGTTTTGTTCAAA+TGG + Chr1:2579332-2579351 MsG0180000184.01.T01:intron 35.0%
!!! GGAGGTTTTGATTATAGTGA+CGG + Chr1:2582159-2582178 MsG0180000184.01.T01:CDS 35.0%
!!! GTGTAGATTGATTTTAGGAC+TGG + Chr1:2581282-2581301 MsG0180000184.01.T01:intron 35.0%
!!! GTTTTGATTATAGTGACGGT+AGG + Chr1:2582163-2582182 MsG0180000184.01.T01:CDS 35.0%
!!! TACTGCAAGTGTGTCTTTTT+TGG + Chr1:2581756-2581775 MsG0180000184.01.T01:intron 35.0%
!!! TTTTGAAGGGGGTTTGTTAA+CGG - Chr1:2581048-2581067 None:intergenic 35.0%
AAACTCTTGAGAGAGTCATC+GGG + Chr1:2579302-2579321 MsG0180000184.01.T01:intron 40.0%
AACATAAAGAGGTTGTGAGG+AGG + Chr1:2579582-2579601 MsG0180000184.01.T01:intron 40.0%
AACATCGGAGAAATCCTAAC+GGG + Chr1:2578202-2578221 MsG0180000184.01.T01:intron 40.0%
AAGGAACAACGAGAGTAAGA+GGG - Chr1:2578725-2578744 None:intergenic 40.0%
AATAGAATCAGGGACAAGCA+AGG + Chr1:2581219-2581238 MsG0180000184.01.T01:intron 40.0%
AATGAGCTGTCACCTACAAA+TGG + Chr1:2578112-2578131 MsG0180000184.01.T01:intron 40.0%
ACGTGCATACTAGGTGAAAT+TGG + Chr1:2581068-2581087 MsG0180000184.01.T01:intron 40.0%
ACTTGCAGTACTAGTATCCA+CGG - Chr1:2581746-2581765 None:intergenic 40.0%
AGAAATCCTAACGGGAATGA+AGG + Chr1:2578210-2578229 MsG0180000184.01.T01:intron 40.0%
AGATGGTAAGTGGTAACTAG+TGG + Chr1:2580722-2580741 MsG0180000184.01.T01:intron 40.0%
AGCCCGTTAACATAAAAGGT+TGG + Chr1:2578340-2578359 MsG0180000184.01.T01:intron 40.0%
AGTGTGTGACAATACTTGTG+TGG - Chr1:2580505-2580524 None:intergenic 40.0%
ATAAATGCCAAGCAACTGCT+AGG + Chr1:2580827-2580846 MsG0180000184.01.T01:intron 40.0%
ATAATTCATCCCTACTCCAG+TGG - Chr1:2577825-2577844 None:intergenic 40.0%
ATAGAATCAGGGACAAGCAA+GGG + Chr1:2581220-2581239 MsG0180000184.01.T01:intron 40.0%
ATATGATTATCAACAGCCCC+AGG + Chr1:2582626-2582645 MsG0180000184.01.T01:CDS 40.0%
ATCTGAGGAACTCCCTAAAA+TGG + Chr1:2582539-2582558 MsG0180000184.01.T01:CDS 40.0%
ATGAGCTGTCACCTACAAAT+GGG + Chr1:2578113-2578132 MsG0180000184.01.T01:intron 40.0%
ATGTCTGTAGAGAATTTGGC+TGG + Chr1:2578178-2578197 MsG0180000184.01.T01:intron 40.0%
CAAACTCTTGAGAGAGTCAT+CGG + Chr1:2579301-2579320 MsG0180000184.01.T01:intron 40.0%
CAAAGTGGTGTAGATGGAAA+TGG + Chr1:2580364-2580383 MsG0180000184.01.T01:CDS 40.0%
CAAGAGTTTGAACTACCTTG+TGG - Chr1:2579291-2579310 None:intergenic 40.0%
CAGACATAGCAGAAAATCCT+TGG - Chr1:2578165-2578184 None:intergenic 40.0%
CCTTCAAAAACGTGCATACT+AGG + Chr1:2581059-2581078 MsG0180000184.01.T01:intron 40.0%
CGAACAATCTAACAGCTTTG+AGG + Chr1:2582716-2582735 MsG0180000184.01.T01:CDS 40.0%
CGTGCATACTAGGTGAAATT+GGG + Chr1:2581069-2581088 MsG0180000184.01.T01:intron 40.0%
CTATAATCAAAACCTCCCTG+TGG - Chr1:2582156-2582175 None:intergenic 40.0%
CTCAGATTCAGCAAGTGAAT+AGG + Chr1:2578058-2578077 MsG0180000184.01.T01:intron 40.0%
GAGAATTTGGCTGGAAACAT+CGG + Chr1:2578187-2578206 MsG0180000184.01.T01:intron 40.0%
GCTATTATAGCATGCTGAGA+TGG - Chr1:2578366-2578385 None:intergenic 40.0%
GGAAAGAAGCAGAAAGCTTT+CGG - Chr1:2579032-2579051 None:intergenic 40.0%
GGAACAAAAAGGTTGAAAGG+AGG + Chr1:2582801-2582820 MsG0180000184.01.T01:CDS 40.0%
GGAAGGAGTTCAGATTTACA+TGG + Chr1:2580303-2580322 MsG0180000184.01.T01:intron 40.0%
GGGGTGATTATTGTGGAATA+TGG + Chr1:2581089-2581108 MsG0180000184.01.T01:intron 40.0%
GTATCCATAGAATGACTCAC+GGG - Chr1:2582859-2582878 None:intergenic 40.0%
GTCAAGCCCGTTAACATAAA+AGG + Chr1:2578336-2578355 MsG0180000184.01.T01:intron 40.0%
GTGAAGTCAAAGATAGCTCT+AGG + Chr1:2582691-2582710 MsG0180000184.01.T01:CDS 40.0%
GTGCATACTAGGTGAAATTG+GGG + Chr1:2581070-2581089 MsG0180000184.01.T01:intron 40.0%
GTTCTATTCAACAAGCACAG+AGG + Chr1:2577861-2577880 MsG0180000184.01.T01:CDS 40.0%
TAAATGCCAAGCAACTGCTA+GGG + Chr1:2580828-2580847 MsG0180000184.01.T01:intron 40.0%
TAAGGAACAACGAGAGTAAG+AGG - Chr1:2578726-2578745 None:intergenic 40.0%
TAGGACAACTGTCAATTGCT+GGG - Chr1:2581149-2581168 None:intergenic 40.0%
TCAAGAAGATTGCAGAACCT+AGG - Chr1:2581386-2581405 None:intergenic 40.0%
TGGAAAATCTACGCAGAATG+AGG + Chr1:2582461-2582480 MsG0180000184.01.T01:CDS 40.0%
TGGACTTGGAGAACTTCAAT+TGG + Chr1:2577925-2577944 MsG0180000184.01.T01:CDS 40.0%
TGTATAATCTTTGCGCTCCT+GGG - Chr1:2582646-2582665 None:intergenic 40.0%
TGTCACTGACATATGCAAAG+TGG - Chr1:2578762-2578781 None:intergenic 40.0%
TGTCCTAGCACTTAGTTAGT+TGG + Chr1:2581162-2581181 MsG0180000184.01.T01:intron 40.0%
TTCATTGCAAATGAGGCACA+AGG - Chr1:2583051-2583070 None:intergenic 40.0%
TTGCCTTACAAGTTACAAGC+CGG + Chr1:2579679-2579698 MsG0180000184.01.T01:intron 40.0%
TTGTATAATCTTTGCGCTCC+TGG - Chr1:2582647-2582666 None:intergenic 40.0%
TTTATATGACTCACGGGTCA+AGG - Chr1:2582830-2582849 None:intergenic 40.0%
! AATGGTTTGCCTGTTGAATC+TGG + Chr1:2580382-2580401 MsG0180000184.01.T01:CDS 40.0%
! AGGAGCGCAAAGATTATACA+AGG + Chr1:2582646-2582665 MsG0180000184.01.T01:CDS 40.0%
! ATGGTTTGCCTGTTGAATCT+GGG + Chr1:2580383-2580402 MsG0180000184.01.T01:CDS 40.0%
! CCTAGTATGCACGTTTTTGA+AGG - Chr1:2581062-2581081 None:intergenic 40.0%
! CTTGTAACTTGTAAGGCAAG+GGG - Chr1:2579678-2579697 None:intergenic 40.0%
! GCTTGTAACTTGTAAGGCAA+GGG - Chr1:2579679-2579698 None:intergenic 40.0%
! GGCCAACCTTTTATGTTAAC+GGG - Chr1:2578345-2578364 None:intergenic 40.0%
!! AAACCGGCTTGTAACTTGTA+AGG - Chr1:2579685-2579704 None:intergenic 40.0%
!! AGCTTTGAACAGCATCAAAG+TGG + Chr1:2580349-2580368 MsG0180000184.01.T01:CDS 40.0%
!! AGTATGCACGTTTTTGAAGG+GGG - Chr1:2581059-2581078 None:intergenic 40.0%
!! AGTTACAAGCCGGTTTTGTA+TGG + Chr1:2579689-2579708 MsG0180000184.01.T01:intron 40.0%
!! GATGGACTAAAAAATGGGTC+CGG + Chr1:2579848-2579867 MsG0180000184.01.T01:intron 40.0%
!! TTAGGTACTGATCTGAGTTG+TGG + Chr1:2578463-2578482 MsG0180000184.01.T01:intron 40.0%
!! TTGTAGTCAGCGCCATTTTA+GGG - Chr1:2582554-2582573 None:intergenic 40.0%
!! TTTGTAGTCAGCGCCATTTT+AGG - Chr1:2582555-2582574 None:intergenic 40.0%
!!! GATTTTAGGACTGGAGTAAG+TGG + Chr1:2581291-2581310 MsG0180000184.01.T01:intron 40.0%
AAATCCACAGTATGCACGTG+TGG - Chr1:2579938-2579957 None:intergenic 45.0%
AACGAGAGTAAGAGGGAACA+AGG - Chr1:2578718-2578737 None:intergenic 45.0%
ACCAGATTATTGACGCTGGT+GGG + Chr1:2580282-2580301 MsG0180000184.01.T01:intron 45.0%
ACTAAAAAGGGATCCTCGTG+AGG + Chr1:2579246-2579265 MsG0180000184.01.T01:intron 45.0%
ACTATCACTTCCACTAGCAC+TGG - Chr1:2582199-2582218 None:intergenic 45.0%
ACTCTCACTCCATGATCCAT+CGG - Chr1:2582286-2582305 None:intergenic 45.0%
AGATAGGAACTAACCTGCGA+TGG - Chr1:2580185-2580204 None:intergenic 45.0%
AGCAGAAGTAGAAGTTCCGA+TGG + Chr1:2582267-2582286 MsG0180000184.01.T01:CDS 45.0%
AGGCATCACTTGGTTGTGAT+TGG + Chr1:2577881-2577900 MsG0180000184.01.T01:CDS 45.0%
ATAGAATGACTCACGGGTCA+AGG - Chr1:2582853-2582872 None:intergenic 45.0%
ATCGACACAAGCCCATTTGT+AGG - Chr1:2578127-2578146 None:intergenic 45.0%
ATGTGAAAGACGGAATGCCA+AGG + Chr1:2578145-2578164 MsG0180000184.01.T01:intron 45.0%
ATTCCAGTCGAATCGAGGTT+TGG + Chr1:2579528-2579547 MsG0180000184.01.T01:intron 45.0%
CAGATTTCTGCTTTGTGCTC+TGG - Chr1:2582399-2582418 None:intergenic 45.0%
CAGCATCAAAGTGGTGTAGA+TGG + Chr1:2580358-2580377 MsG0180000184.01.T01:CDS 45.0%
CTAGGACAACTGTCAATTGC+TGG - Chr1:2581150-2581169 None:intergenic 45.0%
GAAAGTAACAGTAGCGACAG+TGG + Chr1:2582219-2582238 MsG0180000184.01.T01:CDS 45.0%
GATCAGACATTTGCTCCACA+GGG + Chr1:2582108-2582127 MsG0180000184.01.T01:CDS 45.0%
GATCAGACATTTGCTCCACA+TGG + Chr1:2582108-2582127 MsG0180000184.01.T01:CDS 45.0%
GCTCCAACTAACTAAGTGCT+AGG - Chr1:2581168-2581187 None:intergenic 45.0%
GGTGTATTGGGAAAAACCCA+AGG + Chr1:2579603-2579622 MsG0180000184.01.T01:intron 45.0%
GTAGAAGTTCCGATGGATCA+TGG + Chr1:2582274-2582293 MsG0180000184.01.T01:CDS 45.0%
GTATAATCTTTGCGCTCCTG+GGG - Chr1:2582645-2582664 None:intergenic 45.0%
GTCAATTGCTGGGTTGTTAC+TGG - Chr1:2581139-2581158 None:intergenic 45.0%
GTCTGATCATGAAGTCCATG+TGG - Chr1:2582126-2582145 None:intergenic 45.0%
GTGGGAGCTCAATAGAATCA+GGG + Chr1:2581209-2581228 MsG0180000184.01.T01:intron 45.0%
GTGTGGCTTGAGATTGTGTT+CGG - Chr1:2580488-2580507 None:intergenic 45.0%
TACCAGATTATTGACGCTGG+TGG + Chr1:2580281-2580300 MsG0180000184.01.T01:intron 45.0%
TAGGACTGGAGTAAGTGGAA+GGG + Chr1:2581296-2581315 MsG0180000184.01.T01:intron 45.0%
TCATGAAACTCTTCATGGGC+AGG - Chr1:2582090-2582109 None:intergenic 45.0%
TCGTACCAGATTATTGACGC+TGG + Chr1:2580278-2580297 MsG0180000184.01.T01:intron 45.0%
TCTTGTCAAAATGCGGTCAC+AGG + Chr1:2580459-2580478 MsG0180000184.01.T01:CDS 45.0%
TGATCAGACATTTGCTCCAC+AGG + Chr1:2582107-2582126 MsG0180000184.01.T01:CDS 45.0%
TGATGGTTACTCGCATCCTT+CGG - Chr1:2581422-2581441 None:intergenic 45.0%
TGATTCAGAGTTCAGACCGA+AGG + Chr1:2581403-2581422 MsG0180000184.01.T01:intron 45.0%
TGGAGTGAGAGTAGTAGTGA+CGG + Chr1:2582294-2582313 MsG0180000184.01.T01:CDS 45.0%
TTAGGACTGGAGTAAGTGGA+AGG + Chr1:2581295-2581314 MsG0180000184.01.T01:intron 45.0%
TTGACCCGTGAGTCATTCTA+TGG + Chr1:2582852-2582871 MsG0180000184.01.T01:three_prime_UTR 45.0%
TTGTAAGATCACTTTGCGCC+AGG - Chr1:2580413-2580432 None:intergenic 45.0%
! AATCGATTCCAGTCGAATCG+AGG + Chr1:2579523-2579542 MsG0180000184.01.T01:intron 45.0%
! AGGTTGTGAGGAGGTGTATT+GGG + Chr1:2579591-2579610 MsG0180000184.01.T01:intron 45.0%
! AGTAATTGGTGTGCCATTGC+GGG + Chr1:2577957-2577976 MsG0180000184.01.T01:intron 45.0%
! CAGTAATTGGTGTGCCATTG+CGG + Chr1:2577956-2577975 MsG0180000184.01.T01:intron 45.0%
! GCTTCAGTGGGCTTTAGTTT+GGG + Chr1:2578808-2578827 MsG0180000184.01.T01:intron 45.0%
! GCTTGTGTCGATGTGAAAGA+CGG + Chr1:2578135-2578154 MsG0180000184.01.T01:intron 45.0%
! GGCTTGTAACTTGTAAGGCA+AGG - Chr1:2579680-2579699 None:intergenic 45.0%
! TTAGTTTGGGCCCCTGTTTA+TGG + Chr1:2578821-2578840 MsG0180000184.01.T01:intron 45.0%
!! GAATGAGGTTGATGAGAAGC+AGG + Chr1:2582476-2582495 MsG0180000184.01.T01:CDS 45.0%
!! TTCCAAGGACTCTAGAATCC+AGG - Chr1:2581322-2581341 None:intergenic 45.0%
!!! CTAGTTTTGGGCAAAGCCTT+GGG + Chr1:2578786-2578805 MsG0180000184.01.T01:intron 45.0%
!!! TCTAGTTTTGGGCAAAGCCT+TGG + Chr1:2578785-2578804 MsG0180000184.01.T01:intron 45.0%
!!! ATTTTTTTTTAATTTACATT+AGG - Chr1:2579496-2579515 None:intergenic 5.0%
ACTCTTCATGGGCAGGTGTT+AGG - Chr1:2582083-2582102 None:intergenic 50.0%
AGTACAGTAGAGCGGAGCAA+AGG - Chr1:2581465-2581484 None:intergenic 50.0%
CAGCTACCTTCATTCCCGTT+AGG - Chr1:2578219-2578238 None:intergenic 50.0%
GATACCTCTTCCATCAGCGA+GGG + Chr1:2582324-2582343 MsG0180000184.01.T01:CDS 50.0%
GATTATAGTGACGGTAGGGC+AGG + Chr1:2582168-2582187 MsG0180000184.01.T01:CDS 50.0%
GATTATTGACGCTGGTGGGA+AGG + Chr1:2580286-2580305 MsG0180000184.01.T01:intron 50.0%
GCATGTTGAGAGCAAGCAGA+TGG + Chr1:2577996-2578015 MsG0180000184.01.T01:intron 50.0%
GGTGGGAGCTCAATAGAATC+AGG + Chr1:2581208-2581227 MsG0180000184.01.T01:intron 50.0%
GTACAGTAGAGCGGAGCAAA+GGG - Chr1:2581464-2581483 None:intergenic 50.0%
GTGCGCAGTTAAGGTGTATC+AGG - Chr1:2579119-2579138 None:intergenic 50.0%
GTTCATTCAGGCAGTCCACA+AGG + Chr1:2579273-2579292 MsG0180000184.01.T01:intron 50.0%
TCAGGGACAAGCAAGGGAAA+TGG + Chr1:2581226-2581245 MsG0180000184.01.T01:intron 50.0%
TCATTGCCCTAGCAGTTGCT+TGG - Chr1:2580837-2580856 None:intergenic 50.0%
TCCCACCAGCGTCAATAATC+TGG - Chr1:2580286-2580305 None:intergenic 50.0%
TCTGCAAAAGATCCCCGCAA+TGG - Chr1:2577973-2577992 None:intergenic 50.0%
TGATACCTCTTCCATCAGCG+AGG + Chr1:2582323-2582342 MsG0180000184.01.T01:CDS 50.0%
TGTTGAGAGCAAGCAGATGG+TGG + Chr1:2577999-2578018 MsG0180000184.01.T01:intron 50.0%
TTCACCACACGTGCATACTG+TGG + Chr1:2579931-2579950 MsG0180000184.01.T01:intron 50.0%
TTCATCCCTACTCCAGTGGT+CGG - Chr1:2577821-2577840 None:intergenic 50.0%
! ACACCAAACCTCGATTCGAC+TGG - Chr1:2579534-2579553 None:intergenic 50.0%
! ATTGCGGGGATCTTTTGCAG+AGG + Chr1:2577972-2577991 MsG0180000184.01.T01:intron 50.0%
! GAGGTTGTGAGGAGGTGTAT+TGG + Chr1:2579590-2579609 MsG0180000184.01.T01:intron 50.0%
! GGCTTCAGTGGGCTTTAGTT+TGG + Chr1:2578807-2578826 MsG0180000184.01.T01:intron 50.0%
! GTAATTGGTGTGCCATTGCG+GGG + Chr1:2577958-2577977 MsG0180000184.01.T01:intron 50.0%
! GTGGACTGCCTGAATGAACT+CGG - Chr1:2579272-2579291 None:intergenic 50.0%
!! ACAAGCACAGAGGCATCACT+TGG + Chr1:2577871-2577890 MsG0180000184.01.T01:CDS 50.0%
ACCCACGTGCGGTAAAGAGA+AGG - Chr1:2579875-2579894 None:intergenic 55.0%
AGCGACAGTGGAAGTGACAG+TGG + Chr1:2582231-2582250 MsG0180000184.01.T01:CDS 55.0%
CAATCCCTCGCTGATGGAAG+AGG - Chr1:2582331-2582350 None:intergenic 55.0%
CAGACATTTGCTCCACAGGG+AGG + Chr1:2582141-2582160 MsG0180000184.01.T01:CDS 55.0%
CAGGCACACCCAGATTCAAC+AGG - Chr1:2580394-2580413 None:intergenic 55.0%
CCCACGTGCGGTAAAGAGAA+GGG - Chr1:2579874-2579893 None:intergenic 55.0%
CCCTTCTCTTTACCGCACGT+GGG + Chr1:2579871-2579890 MsG0180000184.01.T01:intron 55.0%
CTAAAGCCCACTGAAGCCCA+AGG - Chr1:2578805-2578824 None:intergenic 55.0%
CTCTTCCATCAGCGAGGGAT+TGG + Chr1:2582329-2582348 MsG0180000184.01.T01:CDS 55.0%
CTGTTGAATCTGGGTGTGCC+TGG + Chr1:2580392-2580411 MsG0180000184.01.T01:CDS 55.0%
GCAAAGCCTTGGGCTTCAGT+GGG + Chr1:2578796-2578815 MsG0180000184.01.T01:intron 55.0%
TCCATCAGCGAGGGATTGGA+GGG + Chr1:2582333-2582352 MsG0180000184.01.T01:CDS 55.0%
TCGTGAGGCCGAGTTCATTC+AGG + Chr1:2579261-2579280 MsG0180000184.01.T01:intron 55.0%
TGAATGAACTCGGCCTCACG+AGG - Chr1:2579262-2579281 None:intergenic 55.0%
TTCCATCAGCGAGGGATTGG+AGG + Chr1:2582332-2582351 MsG0180000184.01.T01:CDS 55.0%
TTCTCTTTACCGCACGTGGG+TGG + Chr1:2579874-2579893 MsG0180000184.01.T01:intron 55.0%
! TGAGAGCAAGCAGATGGTGG+TGG + Chr1:2578002-2578021 MsG0180000184.01.T01:intron 55.0%
!! GGCCTGGATTCTAGAGTCCT+TGG + Chr1:2581317-2581336 MsG0180000184.01.T01:intron 55.0%
!! GGGATTGGAGGGTACTGATG+AGG + Chr1:2582344-2582363 MsG0180000184.01.T01:CDS 55.0%
ACCCTCCAATCCCTCGCTGA+TGG - Chr1:2582337-2582356 None:intergenic 60.0%
AGCGGAGCAAAGGGCCACAA+TGG - Chr1:2581455-2581474 None:intergenic 60.0%
CGTGCGGTAAAGAGAAGGGC+CGG - Chr1:2579870-2579889 None:intergenic 60.0%
CTGGAGTAAGTGGAAGGGCC+TGG + Chr1:2581301-2581320 MsG0180000184.01.T01:intron 60.0%
GCCCTTCTCTTTACCGCACG+TGG + Chr1:2579870-2579889 MsG0180000184.01.T01:intron 60.0%
GGCAAAGCCTTGGGCTTCAG+TGG + Chr1:2578795-2578814 MsG0180000184.01.T01:intron 60.0%
TCTTTACCGCACGTGGGTGG+AGG + Chr1:2579877-2579896 MsG0180000184.01.T01:intron 60.0%
TGCTGCCGACCACTGGAGTA+GGG + Chr1:2577813-2577832 MsG0180000184.01.T01:CDS 60.0%
TTGCTGCCGACCACTGGAGT+AGG + Chr1:2577812-2577831 MsG0180000184.01.T01:CDS 60.0%
!! GAGGTTGGTGGCCCCAAAAG+AGG + Chr1:2579896-2579915 MsG0180000184.01.T01:intron 60.0%
CACCAACCTCCACCCACGTG+CGG - Chr1:2579886-2579905 None:intergenic 65.0%
GCAGGCAGCTCCAGTGCTAG+TGG + Chr1:2582186-2582205 MsG0180000184.01.T01:CDS 65.0%
TACCGCACGTGGGTGGAGGT+TGG + Chr1:2579881-2579900 MsG0180000184.01.T01:intron 65.0%
CGCACGTGGGTGGAGGTTGG+TGG + Chr1:2579884-2579903 MsG0180000184.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 2577809 2583078 2577809 ID=MsG0180000184.01;Name=MsG0180000184.01
Chr1 mRNA 2577809 2583078 2577809 ID=MsG0180000184.01.T01;Parent=MsG0180000184.01;Name=MsG0180000184.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0|0.33|1|0.5|0.66|3|239|398
Chr1 exon 2582059 2583078 2582059 ID=MsG0180000184.01.T01:exon:6554;Parent=MsG0180000184.01.T01
Chr1 exon 2580316 2580593 2580316 ID=MsG0180000184.01.T01:exon:6553;Parent=MsG0180000184.01.T01
Chr1 exon 2577809 2577946 2577809 ID=MsG0180000184.01.T01:exon:6552;Parent=MsG0180000184.01.T01
Chr1 CDS 2577809 2577946 2577809 ID=MsG0180000184.01.T01:cds;Parent=MsG0180000184.01.T01
Chr1 CDS 2580316 2580593 2580316 ID=MsG0180000184.01.T01:cds;Parent=MsG0180000184.01.T01
Chr1 CDS 2582059 2582839 2582059 ID=MsG0180000184.01.T01:cds;Parent=MsG0180000184.01.T01
Chr1 three_prime_UTR 2582840 2583078 2582840 ID=MsG0180000184.01.T01:three_prime_utr;Parent=MsG0180000184.01.T01
Gene Sequence

>MsG0180000184.01.T01

ATGTTGCTGCCGACCACTGGAGTAGGGATGAATTATGCAATGGATGATATGAGTTCTATTCAACAAGCACAGAGGCATCACTTGGTTGTGATTGGTGAAGAGATTGATTTAGAAATTGGACTTGGAGAACTTCAATTGATTTACATGGTTGAGGGTGATGATCTATGTGATAGCTTTGAACAGCATCAAAGTGGTGTAGATGGAAATGGTTTGCCTGTTGAATCTGGGTGTGCCTGGCGCAAAGTGATCTTACAACGTATCTTGGAAGAGTCAACTAAGAATCTTGTCAAAATGCGGTCACAGGAAGCCGAACACAATCTCAAGCCACACAAGTATTGTCACACACTCCTTACTTGTTATACACTCCTTACTTGTTATCACACTCTTAAATTTTTCACCATGTCTTTGAAAATATTTTTGCCTGAAGAAAATCATAACCTAACACCTGCCCATGAAGAGTTTCATGATCAGACATTTGCTCCACATGGACTTCATGATCAGACATTTGCTCCACAGGGAGGTTTTGATTATAGTGACGGTAGGGCAGGCAGCTCCAGTGCTAGTGGAAGTGATAGTGAAAGTAACAGTAGCGACAGTGGAAGTGACAGTGGAAGCTATAGTAGTAGCAGAAGTAGAAGTTCCGATGGATCATGGAGTGAGAGTAGTAGTGACGGTGAAAGTGATACCTCTTCCATCAGCGAGGGATTGGAGGGTACTGATGAGGACGTAGATATTTTGAATGATGAAAAAGAGCCAGAGCACAAAGCAGAAATCTGTGATCAAAGAATGTCCTTACCCATTCCAGTAAAATCTCTTGATGGAAAATCTACGCAGAATGAGGTTGATGAGAAGCAGGATGATAATAAATCTGATGCAGTTGATATTGAAAAAGACTCATCTGAGGAACTCCCTAAAATGGCGCTGACTACAAATACCATTTCTGATAGAGTTAGAAAATATGCAGAAGAGACAAAGGCTTTTTCATATGATTATCAACAGCCCCAGGAGCGCAAAGATTATACAAGGAGTTTGTTTTATGAAAGGGGAAGTGAAGTCAAAGATAGCTCTAGGAACGAACAATCTAACAGCTTTGAGGAACTATCTAAAGGTAAACATATGAGGGATTCTGAATTGAAGAACATTGATGAGAAATCTGAAGGAACAAAAAGGTTGAAAGGAGGAAACCTTGACCCGTGA
Protein sequence

>MsG0180000184.01.T01

MLLPTTGVGMNYAMDDMSSIQQAQRHHLVVIGEEIDLEIGLGELQLIYMVEGDDLCDSFEQHQSGVDGNGLPVESGCAWRKVILQRILEESTKNLVKMRSQEAEHNLKPHKYCHTLLTCYTLLTCYHTLKFFTMSLKIFLPEENHNLTPAHEEFHDQTFAPHGLHDQTFAPQGGFDYSDGRAGSSSASGSDSESNSSDSGSDSGSYSSSRSRSSDGSWSESSSDGESDTSSISEGLEGTDEDVDILNDEKEPEHKAEICDQRMSLPIPVKSLDGKSTQNEVDEKQDDNKSDAVDIEKDSSEELPKMALTTNTISDRVRKYAEETKAFSYDYQQPQERKDYTRSLFYERGSEVKDSSRNEQSNSFEELSKGKHMRDSELKNIDEKSEGTKRLKGGNLDP*