AlfalfaGEDB | MsG0880047696.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047696.01

KEGG: -
GO: GO:0005515
PFAM: PF00564

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047696.01.T01	XP_003610489.2	98.187	772	10	2	1	772	1	768	0	1550

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047696.01.T01	O48802	65.854	779	215	10	1	756	1	751	0	929

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047696.01.T01	G7JKF9	98.187	772	10	2	1	772	1	768	0.0	1550

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047958.01	MsG0880047696.01	0.808316	3.287822e-50	1.873962e-47
MsG0080048065.01	MsG0880047696.01	0.820407	6.971162e-53	5.511517e-50
MsG0080048152.01	MsG0880047696.01	0.824600	7.391655e-54	6.578721e-51
MsG0080048307.01	MsG0880047696.01	0.809097	2.238782e-50	1.302573e-47
MsG0080048332.01	MsG0880047696.01	0.802620	5.146066e-49	2.532490e-46
MsG0080048464.01	MsG0880047696.01	0.835620	1.508932e-56	1.855225e-53
MsG0080048672.01	MsG0880047696.01	0.802295	6.003012e-49	2.930004e-46
MsG0080048683.01	MsG0880047696.01	0.814474	1.512626e-51	1.015999e-48
MsG0080048769.01	MsG0880047696.01	0.818276	2.132534e-52	1.589104e-49
MsG0080048773.01	MsG0880047696.01	0.824606	7.368890e-54	6.559687e-51

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PPI

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Gene1	Gene2	Type
MsG0880047696.01	MsG0180000585.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047696.01.T01	MTR_4g132780	98.187	772	10	2	1	772	1	768	0.0	1550
MsG0880047696.01.T01	MTR_2g025130	50.806	496	147	9	261	756	51	449	8.15e-148	441
MsG0880047696.01.T01	MTR_1g012840	41.791	469	199	6	277	743	262	658	1.48e-111	355
MsG0880047696.01.T01	MTR_1g012840	41.509	159	92	1	1	158	1	159	2.36e-31	131
MsG0880047696.01.T01	MTR_2g451540	42.094	468	187	7	280	743	284	671	4.33e-110	352
MsG0880047696.01.T01	MTR_2g451540	42.953	149	84	1	16	164	17	164	3.56e-31	130
MsG0880047696.01.T01	MTR_7g059150	38.710	124	71	2	37	157	92	213	1.98e-19	89.4
MsG0880047696.01.T01	MTR_2g090135	37.097	124	73	2	37	157	95	216	6.20e-18	85.1
MsG0880047696.01.T01	MTR_2g090135	38.614	101	57	2	37	134	95	193	5.60e-15	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047696.01.T01	AT1G62390	65.854	779	215	10	1	756	1	751	0.0	929
MsG0880047696.01.T01	AT2G25290	37.778	720	363	13	32	743	44	686	4.65e-150	456
MsG0880047696.01.T01	AT2G25290	37.778	720	363	13	32	743	44	686	4.65e-150	456
MsG0880047696.01.T01	AT2G25290	37.778	720	363	13	32	743	44	686	4.65e-150	456
MsG0880047696.01.T01	AT2G25290	37.778	720	363	13	32	743	44	686	4.65e-150	456
MsG0880047696.01.T01	AT5G20360	34.663	727	369	15	37	749	33	667	1.31e-116	369
MsG0880047696.01.T01	AT5G20360	34.663	727	369	15	37	749	33	667	1.31e-116	369
MsG0880047696.01.T01	AT5G20360	34.263	753	383	17	15	749	39	697	1.83e-116	369
MsG0880047696.01.T01	AT5G20360	34.263	753	383	17	15	749	39	697	1.83e-116	369
MsG0880047696.01.T01	AT5G20360	34.663	727	369	15	37	749	113	747	6.94e-116	369

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Find 204 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGAGCCAGAAGGAT+AGG	0.530714	8:+89705923	MsG0880047696.01.T01:CDS
AAAATTATGGGGAAATCAGG+TGG	0.628733	8:+89705139	None:intergenic
AAACAGGGAAGTGCTACCGA+AGG	0.674314	8:+89707107	MsG0880047696.01.T01:CDS
AAAGAAAAGCCTGGAGCAAC+AGG	0.377868	8:+89706441	MsG0880047696.01.T01:CDS
AAAGGCTTCAGGACAACTTT+AGG	0.315931	8:-89705868	None:intergenic
AACAAAGGTGGCTCCTGCTC+CGG	0.440439	8:-89706252	None:intergenic
AACAGTCCCTCATAGAAATC+AGG	0.448919	8:-89706852	None:intergenic
AACAGTTGAAGAGTTTCCGT+TGG	0.508342	8:-89706960	None:intergenic
AACGACAGAAGACTCGCCTT+CGG	0.538485	8:-89707123	None:intergenic
AACTTCAAGTGGCTTATGAC+TGG	0.453663	8:+89706772	MsG0880047696.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATATTGTAGAAGTTAGTC+CGG	+	Chr8:89706233-89706252	MsG0880047696.01.T01:CDS	30.0%
AGATAATGAATGCAAAGAAG+TGG	+	Chr8:89706464-89706483	MsG0880047696.01.T01:CDS	30.0%
ATCAAACCTGATTTCTATGA+GGG	+	Chr8:89706846-89706865	MsG0880047696.01.T01:CDS	30.0%
CACATGAAATGAAAGAAGAA+GGG	+	Chr8:89705263-89705282	MsG0880047696.01.T01:CDS	30.0%
TGATCATAAACAAGCTTCAA+TGG	-	Chr8:89705979-89705998	None:intergenic	30.0%
TTGAGAAGAAGAAAGAAACA+GGG	+	Chr8:89707092-89707111	MsG0880047696.01.T01:CDS	30.0%
TTGTTTATGATCATGACATC+AGG	+	Chr8:89705986-89706005	MsG0880047696.01.T01:CDS	30.0%
TTTCAGAGTAAGGATTATAC+TGG	+	Chr8:89705295-89705314	MsG0880047696.01.T01:CDS	30.0%
ACAGCAGGACCATTATTAAA+AGG	-	Chr8:89705889-89705908	None:intergenic	35.0%
AGCTCAGGATCTATTTGATA+AGG	+	Chr8:89706626-89706645	MsG0880047696.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	89705145	89707466	89705145	ID=MsG0880047696.01;Name=MsG0880047696.01
Chr8	mRNA	89705145	89707466	89705145	ID=MsG0880047696.01.T01;Parent=MsG0880047696.01;Name=MsG0880047696.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|773
Chr8	exon	89705145	89707466	89705145	ID=MsG0880047696.01.T01:exon:19960;Parent=MsG0880047696.01.T01
Chr8	CDS	89705145	89707466	89705145	ID=MsG0880047696.01.T01:cds;Parent=MsG0880047696.01.T01

Gene Sequence

>MsG0880047696.01.T01

ATGGGGAAATCAGGTGGTAGAAGAAAGAAGGGTGGTGCTGTTGTTGACAATTCTTCAGCTTCTGTCCAAACACCAAATGGTGGGGTTGAATTGGATTCATCTATTTTCTTGAAGAAGGCACATGAAATGAAAGAAGAAGGGAATAGAAGGTTTCAGAGTAAGGATTATACTGGTGCTCTTGAAAACTATGAGAATGCTCTGAAACTCACGCCCAAAACACATCCTGATAGGGCTGTTTTTCACAGCAATAGGGCTGCTTGTATGATGCAAATGAAACCTATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCGCAATTTGTCCGGGCTTTGCTTCGTAGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTTCAAGATGTGCAGTTGTTATTGGCTTCTGATCCCAATCATAAGGATGCTTTGGATATTGCTCAGAGATTGAGGGCTGCGTTTGGGCCTCGTCAGGAAGCACAGCAGGATCTCCACAGTCGGCCTTCGCCTGCTGCGTTAGGTGCTTCTGCTGTCCGTGGTGCTCCTATTGCTGGATTAGGTCCGTGTTTGCCAGCACGGCCTGCGTCGAAGAAGGGGGCAAATTCTGCCGTTGGGTCAGTTGTTTCTCCTAATAACAAGGTTGACAGGTCTCAAAATGTTTTGCTGCCAACTGAAAATGGTCCAGAGAACAAGACCCAGATGCCTAAAGTTGTCCTGAAGCCTTTTAATAATGGTCCTGCTGTGCAATCTAACTCGAAAAATGAGAGCCAGAAGGATAGGAATCTGTCGGAGGTTTCTATTCGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTCAGATGCCGGTGAACTGCAGTTTCAGAGTACTTAGAGATGTGGTAAGCAAAAGATTTCCTTCGTCAAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACATCTACTGATGAACTCAGATTGGCAGAGTCGTTTGTCGATAGCAATCTGCTGAAAGAACTTGAATCAGATAAAAGTGATTCTATTTCGGTGCTGAGACTACATATTGTAGAAGTTAGTCCGGAGCAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAAAAACTCGTTGAGAATGAAGTGACCAAGGGAGATGAAAGTGGATCTCATTCTTCCCTCGGTGACTCTGTCCCTGAAGTTACTGAAGTTACAGAAGTCACTGAAGTTCCTGATACCGAGGTTGATAAGATAATAACAAAGAAGGATGTTTCAAAAGAAAAGCCTGGAGCAACAGGAGATAATGAATGCAAAGAAGTGGAGATGGATGATTGGCTCTTTGAATTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGACCCTGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTATGTTCAGAGGCACTTGAAGAAACAGTGACAAGTGAGGAAGCTCAGGATCTATTTGATAAGGCTGCTTCAAAGTTCCAGGAGGTGGCGGCATTGGCATTCTTCAACTGGGGTAATGTTCACATGTGCGCTGCTAGGAAGCGAATTCCCTTAGATGAGTCTGCTGGTAAAGATGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGAAAAGTATTCTTTGGCACGAGAGAAGTATGAGGAAGCACTCTTGATCAAACCTGATTTCTATGAGGGACTGTTGGCTCTGGGCCAACAACAATTTGAAATGGCCAAACTCCATTGGTCTTTTGCAATTGCTAAGAAGATAGACCTGTCAACATGGGATCCAACGGAAACTCTTCAACTGTTTAACAGTGCAGAGGAGAAGATGAAATCTGCTACTGATATGTGGGAGAAGTTGGAGGAACAGAGGGCAAAGGAGCTAAAGGACCCAACTGCAACAAAGAAAGAAGAATTGTTGAGAAGAAGAAAGAAACAGGGAAGTGCTACCGAAGGCGAGTCTTCTGTCGTTGGAGGTCAGGGTGAGATATCTGCTGAAGAAGCTGCTGAGCAAGCAGTGGTCATGAGATCACAAATTCATCTTTTTTGGGGCAACATGCTTTTCGAAAAATCCCAAGTGGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAACCTGGATGCTGCAACAGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTTGATGGTTCTAAAGAATCACAGCTCAAACGGTGATACAAAAGGTGATGATAAAAAGGTCCAAAGTCCACTTCCCAACAAGACCGATGAGCTAGAGATCAACAAGGAGGCCAATCAAGGATGA

Protein sequence

>MsG0880047696.01.T01

MGKSGGRRKKGGAVVDNSSASVQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYTGALENYENALKLTPKTHPDRAVFHSNRAACMMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGANSAVGSVVSPNNKVDRSQNVLLPTENGPENKTQMPKVVLKPFNNGPAVQSNSKNESQKDRNLSEVSIRWRPLKLVYDHDIRLAQMPVNCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSNLLKELESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEVTKGDESGSHSSLGDSVPEVTEVTEVTEVPDTEVDKIITKKDVSKEKPGATGDNECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLSTWDPTETLQLFNSAEEKMKSATDMWEKLEEQRAKELKDPTATKKEELLRRRKKQGSATEGESSVVGGQGEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADILMVLKNHSSNGDTKGDDKKVQSPLPNKTDELEINKEANQG*