AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047755.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047755.01.T01 MTR_4g134140 69.863 219 13 4 1 169 8 223 7.20e-87 266
MsG0880047755.01.T01 MTR_4g134150 90.076 131 12 1 176 305 101 231 2.16e-77 239
MsG0880047755.01.T01 MTR_7g056433 30.405 296 156 12 144 393 71 362 7.42e-22 96.7
MsG0880047755.01.T01 MTR_7g032380 33.333 231 130 9 176 390 105 327 2.12e-21 95.1
MsG0880047755.01.T01 MTR_1g041245 33.462 260 126 11 175 391 103 358 2.74e-21 95.1
MsG0880047755.01.T01 MTR_7g032370 32.400 250 125 11 176 390 83 323 2.74e-20 91.7
MsG0880047755.01.T01 MTR_0492s0020 29.845 258 142 6 170 393 171 423 5.08e-20 92.0
MsG0880047755.01.T01 MTR_0543s0010 29.845 258 142 6 170 393 171 423 7.66e-20 91.7
MsG0880047755.01.T01 MTR_7g088260 29.964 277 146 8 176 408 182 454 7.86e-20 91.7
MsG0880047755.01.T01 MTR_7g034115 30.469 256 134 11 175 390 103 354 1.46e-19 90.1
MsG0880047755.01.T01 MTR_7g098570 29.921 254 136 7 176 389 111 362 2.38e-19 90.1
MsG0880047755.01.T01 MTR_7g098510 27.843 255 142 6 176 390 109 361 3.63e-19 89.0
MsG0880047755.01.T01 MTR_2g102690 79.592 49 10 0 182 230 51 99 5.10e-18 80.5
MsG0880047755.01.T01 MTR_7g114710 28.016 257 145 10 180 408 111 355 5.92e-18 85.1
MsG0880047755.01.T01 MTR_3g036250 27.755 245 145 7 176 390 98 340 1.43e-17 84.0
MsG0880047755.01.T01 MTR_5g012840 30.000 230 131 10 176 390 76 290 1.68e-17 83.2
MsG0880047755.01.T01 MTR_7g034120 30.534 262 120 11 176 387 31 280 4.37e-17 82.0
MsG0880047755.01.T01 MTR_2g020180 41.584 101 48 1 293 393 102 191 1.10e-16 79.0
MsG0880047755.01.T01 MTR_3g105060 29.675 246 128 9 180 390 112 347 2.62e-16 80.5
MsG0880047755.01.T01 MTR_3g108150 28.626 262 140 7 176 393 102 360 3.73e-16 80.1
MsG0880047755.01.T01 MTR_3g115430 43.137 102 47 3 293 390 4 98 1.51e-15 73.2
MsG0880047755.01.T01 MTR_7g033990 30.824 279 135 11 159 390 87 354 2.48e-15 77.8
MsG0880047755.01.T01 MTR_3g040700 27.273 242 135 7 176 383 136 370 9.94e-15 75.9
MsG0880047755.01.T01 MTR_7g033915 28.794 257 117 10 176 390 104 336 2.80e-14 73.9
MsG0880047755.01.T01 MTR_5g073420 25.820 244 140 8 176 387 110 344 1.03e-13 72.4
MsG0880047755.01.T01 MTR_6g022360 26.718 262 143 9 168 387 121 375 1.09e-12 69.7
MsG0880047755.01.T01 MTR_7g056420 24.521 261 124 8 176 390 102 335 1.26e-12 70.1
MsG0880047755.01.T01 MTR_7g056430 24.521 261 124 8 176 390 102 335 1.34e-12 70.1
MsG0880047755.01.T01 MTR_7g007080 26.894 264 144 11 176 397 107 363 1.46e-12 68.9
MsG0880047755.01.T01 MTR_6g022500 27.092 251 143 6 176 390 200 446 1.28e-11 66.6
MsG0880047755.01.T01 MTR_7g081290 41.346 104 49 3 293 390 134 231 1.29e-11 65.1
MsG0880047755.01.T01 MTR_5g013500 27.341 267 123 12 176 390 88 335 7.67e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCAAGTTGGGTGTTTC+TGG 0.033738 8:-90439963 None:intergenic
GCTAAGAACTTGCTTGTTTA+TGG 0.099866 8:+90440372 MsG0880047755.01.T01:CDS
TCGTGCTTTGCATATGAAAA+AGG 0.217761 8:-90440482 None:intergenic
CATATGCGATACCTGATTAA+TGG 0.270639 8:-90440204 None:intergenic
CTAAGAACTTGCTTGTTTAT+GGG 0.298746 8:+90440373 MsG0880047755.01.T01:CDS
CAAGTGTTTGATTACAATTT+CGG 0.312597 8:+90436530 MsG0880047755.01.T01:CDS
GAAACTAAATATAAGGAAAT+TGG 0.325459 8:+90437511 MsG0880047755.01.T01:CDS
GGTAATATATGTTGTAGATT+TGG 0.333225 8:-90440183 None:intergenic
ATGAAATTTATGAGTACAAT+TGG 0.344344 8:+90440304 MsG0880047755.01.T01:CDS
GAACTACCCAATCTAATCTA+AGG 0.351629 8:+90437540 MsG0880047755.01.T01:CDS
TTTGAAGAAGGAAAGTAGAT+TGG 0.355768 8:+90436595 MsG0880047755.01.T01:CDS
TTGTAGGGAAACTAAATATA+AGG 0.364114 8:+90437504 MsG0880047755.01.T01:CDS
TATGTTACCTTAGATTAGAT+TGG 0.375634 8:-90437547 None:intergenic
GACATGTTGGAGGATGTTAA+TGG 0.376424 8:+90439714 MsG0880047755.01.T01:CDS
AATATAAGTTTACATCCCTT+TGG 0.380461 8:-90440530 None:intergenic
CAAGCATGGAAGCACTTTCA+TGG 0.384069 8:+90436738 MsG0880047755.01.T01:CDS
AATAAAACCACAACCACAAC+TGG 0.394819 8:-90436492 None:intergenic
AATTGTCATCTTTCACAAAC+AGG 0.396177 8:-90439791 None:intergenic
TCTTGAATATCATGCTTAGT+TGG 0.411358 8:-90436434 None:intergenic
AGAGAATCAGTAGTTGTAGA+AGG 0.415232 8:-90436782 None:intergenic
CTTAGGTTGTCCCGTTATAG+AGG 0.416613 8:+90439896 MsG0880047755.01.T01:CDS
GTTCGCAATTCCTCTATAAC+GGG 0.418796 8:-90439906 None:intergenic
AACATATATTACCATTAATC+AGG 0.428083 8:+90440193 MsG0880047755.01.T01:CDS
TGTTCGCAATTCCTCTATAA+CGG 0.435085 8:-90439907 None:intergenic
GAAATCTCCAGTTGTGGTTG+TGG 0.445667 8:+90436485 MsG0880047755.01.T01:CDS
ATGCAAAGCACGAAATATTA+CGG 0.450596 8:+90440492 MsG0880047755.01.T01:CDS
GGTAGAAATGATGCTTATTG+AGG 0.452714 8:+90437451 MsG0880047755.01.T01:CDS
AATACTTGTTCTCATCAAGT+TGG 0.458979 8:-90439973 None:intergenic
GAAGCCATTGTGGAACTTGT+AGG 0.460657 8:+90437488 MsG0880047755.01.T01:CDS
GTTTGAGATAAATTTGAAGA+AGG 0.464932 8:+90436583 MsG0880047755.01.T01:CDS
AATATAAGGAAATTGGTGAT+TGG 0.465583 8:+90437518 MsG0880047755.01.T01:CDS
TTCTCTGTATAGATATTATG+AGG 0.467490 8:+90439841 MsG0880047755.01.T01:CDS
TAACATAATCTGCACATTGA+AGG 0.471064 8:-90440417 None:intergenic
ATGTTACCTTAGATTAGATT+GGG 0.474526 8:-90437546 None:intergenic
ATACTTGTTCTCATCAAGTT+GGG 0.475837 8:-90439972 None:intergenic
AGGTGTCACGGCATGTTTCA+AGG 0.477649 8:-90436762 None:intergenic
GTAGAAATGATGCTTATTGA+GGG 0.483302 8:+90437452 MsG0880047755.01.T01:CDS
TATAGATGATGTTGTTTATG+TGG 0.505857 8:+90436691 MsG0880047755.01.T01:CDS
ATACAGAGAACTTTGAGTAA+AGG 0.514076 8:-90439828 None:intergenic
AAGGGTAAGAAGTGGATGCT+AGG 0.515831 8:+90440144 MsG0880047755.01.T01:intron
AATTTCGGAGACGACGATGA+TGG 0.516786 8:+90436545 MsG0880047755.01.T01:CDS
CGAAATTGTAATCAAACACT+TGG 0.523720 8:-90436529 None:intergenic
TCGGATATCGGAACAGTATG+TGG 0.524379 8:-90440333 None:intergenic
ATTGGATTCAATAAGAGAAG+AGG 0.530259 8:+90436613 MsG0880047755.01.T01:CDS
AAGCCATTGTGGAACTTGTA+GGG 0.539241 8:+90437489 MsG0880047755.01.T01:CDS
AAATTAGTTGCATGTCCAAA+GGG 0.542286 8:+90440515 MsG0880047755.01.T01:CDS
ATTAATGCAGCAATACAAAG+AGG 0.550621 8:+90439672 MsG0880047755.01.T01:intron
CCTCCAACATGTCAATGTCT+AGG 0.553090 8:-90439704 None:intergenic
TATGTGGCAGTGGGAACAAA+TGG 0.556548 8:+90436707 MsG0880047755.01.T01:CDS
TGATGTTGTTTATGTGGCAG+TGG 0.557388 8:+90436697 MsG0880047755.01.T01:CDS
GAAATTAGTTGCATGTCCAA+AGG 0.565492 8:+90440514 MsG0880047755.01.T01:CDS
AAACCTAGACATTGACATGT+TGG 0.566636 8:+90439701 MsG0880047755.01.T01:CDS
CAACGTTGCTGAAGCCATTG+TGG 0.587024 8:+90437478 MsG0880047755.01.T01:CDS
CCTAGACATTGACATGTTGG+AGG 0.589073 8:+90439704 MsG0880047755.01.T01:CDS
TGACTTGAGGGAAAACGTGT+AGG 0.604542 8:-90436805 None:intergenic
AAATGGTGGAAGTTCAAGCA+TGG 0.604604 8:+90436724 MsG0880047755.01.T01:CDS
TAGGCAGAAATATATTGACT+TGG 0.606515 8:-90439996 None:intergenic
TTTCCCTACAAGTTCCACAA+TGG 0.638145 8:-90437492 None:intergenic
GATGTTGTTTATGTGGCAGT+GGG 0.642705 8:+90436698 MsG0880047755.01.T01:CDS
AGTAGTTGTAGAAGGTGTCA+CGG 0.650639 8:-90436774 None:intergenic
ATTCAATAAGAGAAGAGGAG+TGG 0.652515 8:+90436618 MsG0880047755.01.T01:CDS
GTGGCAGTGGGAACAAATGG+TGG 0.662195 8:+90436710 MsG0880047755.01.T01:CDS
ATACTGTTCCGATATCCGAA+AGG 0.671281 8:+90440337 MsG0880047755.01.T01:CDS
GATGATGAAATCTCCAGTTG+TGG 0.697511 8:+90436479 MsG0880047755.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAATTAATTAA+TGG + Chr8:90437856-90437875 MsG0880047755.01.T01:intron 0.0%
!!! AATTAATTAATTAATGGATA+TGG + Chr8:90437878-90437897 MsG0880047755.01.T01:intron 10.0%
!! ATATATATTTATATTCTCTC+AGG - Chr8:90439214-90439233 None:intergenic 15.0%
!! ATTATATTCCAATATCATTA+TGG + Chr8:90437731-90437750 MsG0880047755.01.T01:intron 15.0%
!! CAATTAGATAAAGTTAAATT+TGG - Chr8:90436920-90436939 None:intergenic 15.0%
!! TATCAAGATATTAAGAAATA+AGG - Chr8:90438187-90438206 None:intergenic 15.0%
!! TTATATTCCAATATCATTAT+GGG + Chr8:90437732-90437751 MsG0880047755.01.T01:intron 15.0%
!!! AAAACTTATTTTGAATGTTA+TGG - Chr8:90437174-90437193 None:intergenic 15.0%
!!! ATAGATATTTTTAAATTTCC+AGG + Chr8:90438701-90438720 MsG0880047755.01.T01:intron 15.0%
!!! ATATTAAGAAATAAGGTATT+AGG - Chr8:90438180-90438199 None:intergenic 15.0%
!!! ATGTTTTGTTTGTAATTTTA+AGG + Chr8:90440125-90440144 MsG0880047755.01.T01:intron 15.0%
!!! TGACAATAATATGTTTTTTT+GGG + Chr8:90437101-90437120 MsG0880047755.01.T01:intron 15.0%
!!! TGTTTTGTTTGTAATTTTAA+GGG + Chr8:90440126-90440145 MsG0880047755.01.T01:intron 15.0%
!!! TTGACAATAATATGTTTTTT+TGG + Chr8:90437100-90437119 MsG0880047755.01.T01:intron 15.0%
!! AAACCTTATATATGTATTGA+TGG + Chr8:90437376-90437395 MsG0880047755.01.T01:intron 20.0%
!! AACATATATTACCATTAATC+AGG + Chr8:90440193-90440212 MsG0880047755.01.T01:CDS 20.0%
!! AATGTAATATTTACTCATCT+TGG - Chr8:90438542-90438561 None:intergenic 20.0%
!! AGTGATCAAATTAAGTAATA+CGG + Chr8:90437810-90437829 MsG0880047755.01.T01:intron 20.0%
!! ATACACATTCACATTTATAT+TGG + Chr8:90438797-90438816 MsG0880047755.01.T01:intron 20.0%
!! ATCCAATATAAAATAAGCTA+TGG + Chr8:90437962-90437981 MsG0880047755.01.T01:intron 20.0%
!! ATGAAATTTATGAGTACAAT+TGG + Chr8:90440304-90440323 MsG0880047755.01.T01:CDS 20.0%
!! CATAGACAAAATATTACAAA+TGG - Chr8:90440073-90440092 None:intergenic 20.0%
!! GAAACTAAATATAAGGAAAT+TGG + Chr8:90437511-90437530 MsG0880047755.01.T01:CDS 20.0%
!! TGCAAAATTGAAAATGTATT+TGG - Chr8:90438732-90438751 None:intergenic 20.0%
!! TTTCATAATCTTAAACAACT+TGG + Chr8:90437203-90437222 MsG0880047755.01.T01:intron 20.0%
!! TTTGTAAGCATAATATTATC+TGG - Chr8:90438954-90438973 None:intergenic 20.0%
!!! AATGTTATGGTTATGTTTTT+GGG - Chr8:90437161-90437180 None:intergenic 20.0%
!!! ATATTTTTAAATTTCCAGGT+TGG + Chr8:90438705-90438724 MsG0880047755.01.T01:intron 20.0%
!!! CTTTTTAATGTTGGAAATTT+AGG - Chr8:90438319-90438338 None:intergenic 20.0%
!!! TTTAAGATCAACAATAATGT+TGG + Chr8:90438752-90438771 MsG0880047755.01.T01:intron 20.0%
!!! TTTTGTTTGAAAATAAGACA+AGG - Chr8:90436858-90436877 None:intergenic 20.0%
! AAATTAAAACAGATACGTAG+AGG - Chr8:90440257-90440276 None:intergenic 25.0%
! AATTTACTTGAATTGTGTAC+AGG + Chr8:90440272-90440291 MsG0880047755.01.T01:intron 25.0%
! ACAATGAACATGAATATGAA+CGG - Chr8:90438229-90438248 None:intergenic 25.0%
! ACTCCATCAATACATATATA+AGG - Chr8:90437382-90437401 None:intergenic 25.0%
! ATATTTGCCCATAATGATAT+TGG - Chr8:90437742-90437761 None:intergenic 25.0%
! ATGTTACCTTAGATTAGATT+GGG - Chr8:90437549-90437568 None:intergenic 25.0%
! CAAGTGTTTGATTACAATTT+CGG + Chr8:90436530-90436549 MsG0880047755.01.T01:CDS 25.0%
! CTAAATAACCATGATAGATT+GGG - Chr8:90438503-90438522 None:intergenic 25.0%
! CTTTACCTTAGAAAAAAAGT+AGG - Chr8:90440018-90440037 None:intergenic 25.0%
! GAAGCTATATAGTATGATTT+AGG - Chr8:90437247-90437266 None:intergenic 25.0%
! GAATATTGAGTAGCAAAAAA+GGG + Chr8:90437648-90437667 MsG0880047755.01.T01:intron 25.0%
! GGTAATATATGTTGTAGATT+TGG - Chr8:90440186-90440205 None:intergenic 25.0%
! TATAAGCTCTTCATTTCTAT+TGG + Chr8:90438829-90438848 MsG0880047755.01.T01:intron 25.0%
! TATGATGTGCAATTAATAAG+AGG - Chr8:90436960-90436979 None:intergenic 25.0%
! TATGTTACCTTAGATTAGAT+TGG - Chr8:90437550-90437569 None:intergenic 25.0%
! TGAATATTGAGTAGCAAAAA+AGG + Chr8:90437647-90437666 MsG0880047755.01.T01:intron 25.0%
! TGTAAATATTAAAACCAACC+CGG + Chr8:90440091-90440110 MsG0880047755.01.T01:intron 25.0%
! TTCTCTGTATAGATATTATG+AGG + Chr8:90439841-90439860 MsG0880047755.01.T01:CDS 25.0%
! TTGTAGGGAAACTAAATATA+AGG + Chr8:90437504-90437523 MsG0880047755.01.T01:CDS 25.0%
! TTTATATTGGATGACCATTA+GGG - Chr8:90437954-90437973 None:intergenic 25.0%
!! AAAGATTTGATCACATCTTT+TGG - Chr8:90437049-90437068 None:intergenic 25.0%
!! AAAGATTTTGCGTCTAAATA+TGG + Chr8:90440034-90440053 MsG0880047755.01.T01:CDS 25.0%
!! AATATAAGGAAATTGGTGAT+TGG + Chr8:90437518-90437537 MsG0880047755.01.T01:CDS 25.0%
!! ACTATTACCAAGTTTTTCTT+AGG + Chr8:90439879-90439898 MsG0880047755.01.T01:CDS 25.0%
!! GAATGTTATGGTTATGTTTT+TGG - Chr8:90437162-90437181 None:intergenic 25.0%
!! GTTTGAGATAAATTTGAAGA+AGG + Chr8:90436583-90436602 MsG0880047755.01.T01:CDS 25.0%
!! TATAGATGATGTTGTTTATG+TGG + Chr8:90436691-90436710 MsG0880047755.01.T01:CDS 25.0%
!! TTTTATATTGGATGACCATT+AGG - Chr8:90437955-90437974 None:intergenic 25.0%
!!! GACCATAGCTTATTTTATAT+TGG - Chr8:90437967-90437986 None:intergenic 25.0%
AAAACATTAGAAACCATACC+GGG - Chr8:90440112-90440131 None:intergenic 30.0%
AAATTAGTTGCATGTCCAAA+GGG + Chr8:90440515-90440534 MsG0880047755.01.T01:CDS 30.0%
AATACTTGTTCTCATCAAGT+TGG - Chr8:90439976-90439995 None:intergenic 30.0%
AATTGTCATCTTTCACAAAC+AGG - Chr8:90439794-90439813 None:intergenic 30.0%
AGCCAAAGTAATAGAATCTA+TGG + Chr8:90439135-90439154 MsG0880047755.01.T01:intron 30.0%
AGGAATGCAAAATTACATTG+CGG + Chr8:90437673-90437692 MsG0880047755.01.T01:intron 30.0%
ATACAGAGAACTTTGAGTAA+AGG - Chr8:90439831-90439850 None:intergenic 30.0%
ATACCTGGATAAAACTTTCA+TGG - Chr8:90438156-90438175 None:intergenic 30.0%
ATACTTGTTCTCATCAAGTT+GGG - Chr8:90439975-90439994 None:intergenic 30.0%
ATGAAAAACCTTTCGGATAT+CGG - Chr8:90440348-90440367 None:intergenic 30.0%
ATGCAAAGCACGAAATATTA+CGG + Chr8:90440492-90440511 MsG0880047755.01.T01:CDS 30.0%
ATTAATGCAGCAATACAAAG+AGG + Chr8:90439672-90439691 MsG0880047755.01.T01:intron 30.0%
ATTGGATTCAATAAGAGAAG+AGG + Chr8:90436613-90436632 MsG0880047755.01.T01:CDS 30.0%
CAAAACATTAGAAACCATAC+CGG - Chr8:90440113-90440132 None:intergenic 30.0%
CAACAATTATGAATCAACAG+CGG - Chr8:90438264-90438283 None:intergenic 30.0%
CATGAATTATTACTACGAGA+AGG + Chr8:90437266-90437285 MsG0880047755.01.T01:intron 30.0%
CCAATCTATCATGGTTATTT+AGG + Chr8:90438501-90438520 MsG0880047755.01.T01:intron 30.0%
CCTAAATAACCATGATAGAT+TGG - Chr8:90438504-90438523 None:intergenic 30.0%
CGAAATTGTAATCAAACACT+TGG - Chr8:90436532-90436551 None:intergenic 30.0%
GCCAAAGTAATAGAATCTAT+GGG + Chr8:90439136-90439155 MsG0880047755.01.T01:intron 30.0%
GTAGAAATGATGCTTATTGA+GGG + Chr8:90437452-90437471 MsG0880047755.01.T01:CDS 30.0%
TAACATAATCTGCACATTGA+AGG - Chr8:90440420-90440439 None:intergenic 30.0%
TCTTGAATATCATGCTTAGT+TGG - Chr8:90436437-90436456 None:intergenic 30.0%
TGGAATGTGAATCATAATCA+GGG - Chr8:90438934-90438953 None:intergenic 30.0%
TTTATATTCTCTCAGGTCTT+AGG - Chr8:90439207-90439226 None:intergenic 30.0%
TTTCCCATTATTCCGTTAAT+GGG - Chr8:90437931-90437950 None:intergenic 30.0%
TTTGAAGAAGGAAAGTAGAT+TGG + Chr8:90436595-90436614 MsG0880047755.01.T01:CDS 30.0%
! AATAAGGTATTAGGAATACC+TGG - Chr8:90438171-90438190 None:intergenic 30.0%
! ATTCTATTACTTTGGCTTCT+CGG - Chr8:90439132-90439151 None:intergenic 30.0%
! CTAAGAACTTGCTTGTTTAT+GGG + Chr8:90440373-90440392 MsG0880047755.01.T01:CDS 30.0%
! TAATGAAAAGCGTAACATAC+AGG + Chr8:90437424-90437443 MsG0880047755.01.T01:intron 30.0%
! TAGGCAGAAATATATTGACT+TGG - Chr8:90439999-90440018 None:intergenic 30.0%
! TCATCTTGGTGATAAAAATC+TGG - Chr8:90438528-90438547 None:intergenic 30.0%
! TGATAACGAATCTATAGAGA+TGG - Chr8:90438870-90438889 None:intergenic 30.0%
! TGTTGGTCTAAAACATTAGT+TGG + Chr8:90438769-90438788 MsG0880047755.01.T01:intron 30.0%
! TTGGTGATTTATGCTTATGT+TGG - Chr8:90436901-90436920 None:intergenic 30.0%
!! GCTTCATGTATTATTTCTGA+AGG - Chr8:90437317-90437336 None:intergenic 30.0%
!! GTAATTTTAAGGGTAAGAAG+TGG + Chr8:90440136-90440155 MsG0880047755.01.T01:intron 30.0%
!! TCTTGTACGCTTTTTAATGT+TGG - Chr8:90438328-90438347 None:intergenic 30.0%
!! TTGGAATTAGTTTGACTTGA+GGG - Chr8:90436820-90436839 None:intergenic 30.0%
!!! TATCATTTTATTTCTAGCCC+CGG + Chr8:90438885-90438904 MsG0880047755.01.T01:CDS 30.0%
!!! TTCTGCCTACTTTTTTTCTA+AGG + Chr8:90440010-90440029 MsG0880047755.01.T01:CDS 30.0%
AAAATGTATTTGGTCCAACC+TGG - Chr8:90438722-90438741 None:intergenic 35.0%
AAACCTAGACATTGACATGT+TGG + Chr8:90439701-90439720 MsG0880047755.01.T01:CDS 35.0%
AAAGCGTAACATACAGGTTA+AGG + Chr8:90437430-90437449 MsG0880047755.01.T01:intron 35.0%
AATAAAACCACAACCACAAC+TGG - Chr8:90436495-90436514 None:intergenic 35.0%
ACATGAGTTGTTTGTAGACA+AGG - Chr8:90437573-90437592 None:intergenic 35.0%
ACCTTACCAAACTGTTTGAT+GGG + Chr8:90439080-90439099 MsG0880047755.01.T01:intron 35.0%
AGACAGAATTGAATCTGGAA+GGG - Chr8:90439413-90439432 None:intergenic 35.0%
AGAGAATCAGTAGTTGTAGA+AGG - Chr8:90436785-90436804 None:intergenic 35.0%
AGCTGAGATGAAAAACCTTT+CGG - Chr8:90440355-90440374 None:intergenic 35.0%
ATATTAAAACCAACCCGGTA+TGG + Chr8:90440096-90440115 MsG0880047755.01.T01:intron 35.0%
ATCCATTCCAATAGAAGACA+GGG + Chr8:90439381-90439400 MsG0880047755.01.T01:intron 35.0%
ATGACCCATTAACGGAATAA+TGG + Chr8:90437924-90437943 MsG0880047755.01.T01:intron 35.0%
ATGTGAGACAGAATTGAATC+TGG - Chr8:90439418-90439437 None:intergenic 35.0%
ATTCAATAAGAGAAGAGGAG+TGG + Chr8:90436618-90436637 MsG0880047755.01.T01:CDS 35.0%
CAAACAAACAAGAACGTTAG+CGG - Chr8:90438088-90438107 None:intergenic 35.0%
CAATCACTTTGCCTCAAATA+TGG + Chr8:90439615-90439634 MsG0880047755.01.T01:intron 35.0%
CACAATTTCTCATCAAGTAG+AGG + Chr8:90438442-90438461 MsG0880047755.01.T01:intron 35.0%
CATATGCGATACCTGATTAA+TGG - Chr8:90440207-90440226 None:intergenic 35.0%
CGAATCTATAGAGATGGTTA+AGG - Chr8:90438864-90438883 None:intergenic 35.0%
CGTATTCTTTGCCATATTTG+AGG - Chr8:90439629-90439648 None:intergenic 35.0%
CTCTACTTGATGAGAAATTG+TGG - Chr8:90438444-90438463 None:intergenic 35.0%
CTGGAATGTGAATCATAATC+AGG - Chr8:90438935-90438954 None:intergenic 35.0%
CTTGCAACTAAAAATGCTAC+TGG - Chr8:90439745-90439764 None:intergenic 35.0%
GAAATTAGTTGCATGTCCAA+AGG + Chr8:90440514-90440533 MsG0880047755.01.T01:CDS 35.0%
GAACTACCCAATCTAATCTA+AGG + Chr8:90437540-90437559 MsG0880047755.01.T01:CDS 35.0%
GAAGAGAACTTGAGTCATAA+AGG + Chr8:90438030-90438049 MsG0880047755.01.T01:intron 35.0%
GCCCATAGATTCTATTACTT+TGG - Chr8:90439140-90439159 None:intergenic 35.0%
GGTAGAAATGATGCTTATTG+AGG + Chr8:90437451-90437470 MsG0880047755.01.T01:CDS 35.0%
GTGATGTCAAAATCATGTGA+AGG + Chr8:90438353-90438372 MsG0880047755.01.T01:intron 35.0%
GTGATTTATGCTTATGTTGG+AGG - Chr8:90436898-90436917 None:intergenic 35.0%
GTTTCCCATTATTCCGTTAA+TGG - Chr8:90437932-90437951 None:intergenic 35.0%
TAAGACAAGGAGTAGTTACA+TGG - Chr8:90436845-90436864 None:intergenic 35.0%
TAAGGTGATGTAGTCTTTGA+AGG - Chr8:90439545-90439564 None:intergenic 35.0%
TCGAGAACTAAAAGCCATAA+TGG - Chr8:90439502-90439521 None:intergenic 35.0%
TCGTGCTTTGCATATGAAAA+AGG - Chr8:90440485-90440504 None:intergenic 35.0%
TCTAGACTAGACTATTCGTT+TGG - Chr8:90438638-90438657 None:intergenic 35.0%
TCTATTGGAATGGATCGATA+TGG - Chr8:90439376-90439395 None:intergenic 35.0%
TGACCCATTAACGGAATAAT+GGG + Chr8:90437925-90437944 MsG0880047755.01.T01:intron 35.0%
TGATCGACCAGATGATTAAT+GGG + Chr8:90438384-90438403 MsG0880047755.01.T01:intron 35.0%
TGTAACCAAGTGATTGAGAT+TGG + Chr8:90438609-90438628 MsG0880047755.01.T01:intron 35.0%
TGTTCGCAATTCCTCTATAA+CGG - Chr8:90439910-90439929 None:intergenic 35.0%
TTGAGGCAAAGTGATTGTAT+TGG - Chr8:90439612-90439631 None:intergenic 35.0%
! ATCAGGTATCGCATATGTTT+AGG + Chr8:90440210-90440229 MsG0880047755.01.T01:intron 35.0%
! GCAATGTAATTTTGCATTCC+TGG - Chr8:90437674-90437693 None:intergenic 35.0%
! GCTAAGAACTTGCTTGTTTA+TGG + Chr8:90440372-90440391 MsG0880047755.01.T01:CDS 35.0%
! TTCTATTACTTTGGCTTCTC+GGG - Chr8:90439131-90439150 None:intergenic 35.0%
! TTTTGATGCCCAATCTATCA+TGG + Chr8:90438492-90438511 MsG0880047755.01.T01:intron 35.0%
!! ATTACAAGTGTTGACTGTGA+TGG - Chr8:90438669-90438688 None:intergenic 35.0%
!! GTTGGAATTAGTTTGACTTG+AGG - Chr8:90436821-90436840 None:intergenic 35.0%
!! TGCTTGTTTATGGGTTTTAG+AGG + Chr8:90440382-90440401 MsG0880047755.01.T01:CDS 35.0%
!!! AGTTGTGGTTGTGGTTTTAT+TGG + Chr8:90436494-90436513 MsG0880047755.01.T01:CDS 35.0%
!!! ATCATTTTATTTCTAGCCCC+GGG + Chr8:90438886-90438905 MsG0880047755.01.T01:CDS 35.0%
!!! GTTGTGGTTGTGGTTTTATT+GGG + Chr8:90436495-90436514 MsG0880047755.01.T01:CDS 35.0%
AACCCTGTCTTCTATTGGAA+TGG - Chr8:90439386-90439405 None:intergenic 40.0%
AAGCCATTGTGGAACTTGTA+GGG + Chr8:90437489-90437508 MsG0880047755.01.T01:CDS 40.0%
AAGGAGTAGTTACATGGAGT+TGG - Chr8:90436839-90436858 None:intergenic 40.0%
AAGTGGACCCATTAATCATC+TGG - Chr8:90438394-90438413 None:intergenic 40.0%
ACAACATCACGGATGAACTA+GGG - Chr8:90439290-90439309 None:intergenic 40.0%
ACTCAAGTTCTCTTCAGATG+GGG - Chr8:90438025-90438044 None:intergenic 40.0%
ACTCAATATGAGTGGATGTC+TGG + Chr8:90437901-90437920 MsG0880047755.01.T01:intron 40.0%
AGAAGGTTTCATGAAGCAAG+AGG + Chr8:90437283-90437302 MsG0880047755.01.T01:intron 40.0%
AGCTACAATGCTCATGATTC+AGG - Chr8:90439009-90439028 None:intergenic 40.0%
ATACTGTTCCGATATCCGAA+AGG + Chr8:90440337-90440356 MsG0880047755.01.T01:CDS 40.0%
ATCCAGAAACTTACCATACC+CGG - Chr8:90438907-90438926 None:intergenic 40.0%
ATCTATGGGCAGAAAGTTTG+TGG + Chr8:90439150-90439169 MsG0880047755.01.T01:intron 40.0%
ATGTCTGGATGACCCATTAA+CGG + Chr8:90437916-90437935 MsG0880047755.01.T01:intron 40.0%
CAATGACCAAGTAAACGACA+TGG - Chr8:90439569-90439588 None:intergenic 40.0%
CACCTTACCAAACTGTTTGA+TGG + Chr8:90439079-90439098 MsG0880047755.01.T01:intron 40.0%
CTGGATAAAACTTTCATGGC+AGG - Chr8:90438152-90438171 None:intergenic 40.0%
CTTGAATTGTGTACAGGACA+TGG + Chr8:90440278-90440297 MsG0880047755.01.T01:intron 40.0%
CTTGAGTGGAACAAAACCAT+GGG - Chr8:90438471-90438490 None:intergenic 40.0%
GACATGTTGGAGGATGTTAA+TGG + Chr8:90439714-90439733 MsG0880047755.01.T01:CDS 40.0%
GACTCAAGTTCTCTTCAGAT+GGG - Chr8:90438026-90438045 None:intergenic 40.0%
GAGACAGAATTGAATCTGGA+AGG - Chr8:90439414-90439433 None:intergenic 40.0%
GATCCATTCCAATAGAAGAC+AGG + Chr8:90439380-90439399 MsG0880047755.01.T01:intron 40.0%
GATGATGAAATCTCCAGTTG+TGG + Chr8:90436479-90436498 MsG0880047755.01.T01:CDS 40.0%
GCAAAATTACATTGCGGACA+TGG + Chr8:90437679-90437698 MsG0880047755.01.T01:intron 40.0%
GGATATGGACTCAATATGAG+TGG + Chr8:90437893-90437912 MsG0880047755.01.T01:intron 40.0%
GGGACAACCTAAGAAAAACT+TGG - Chr8:90439889-90439908 None:intergenic 40.0%
GGTATCCAATCTCAATCACT+TGG - Chr8:90438617-90438636 None:intergenic 40.0%
GTGATCGACCAGATGATTAA+TGG + Chr8:90438383-90438402 MsG0880047755.01.T01:intron 40.0%
GTTCGCAATTCCTCTATAAC+GGG - Chr8:90439909-90439928 None:intergenic 40.0%
TACAACATCACGGATGAACT+AGG - Chr8:90439291-90439310 None:intergenic 40.0%
TGACTCAAGTTCTCTTCAGA+TGG - Chr8:90438027-90438046 None:intergenic 40.0%
TTGCGTTCATCATCTTGTAC+AGG + Chr8:90439055-90439074 MsG0880047755.01.T01:intron 40.0%
TTTCCCTACAAGTTCCACAA+TGG - Chr8:90437495-90437514 None:intergenic 40.0%
TTTGTCGTCGTACAACATCA+CGG - Chr8:90439301-90439320 None:intergenic 40.0%
! AAATGGTGGAAGTTCAAGCA+TGG + Chr8:90436724-90436743 MsG0880047755.01.T01:CDS 40.0%
! GATGTTGTTTATGTGGCAGT+GGG + Chr8:90436698-90436717 MsG0880047755.01.T01:CDS 40.0%
! GGAATAATGGGAAACCCTAA+TGG + Chr8:90437937-90437956 MsG0880047755.01.T01:intron 40.0%
! GGTATGGTAAGTTTCTGGAT+CGG + Chr8:90438907-90438926 MsG0880047755.01.T01:intron 40.0%
! TGATGTTGTTTATGTGGCAG+TGG + Chr8:90436697-90436716 MsG0880047755.01.T01:CDS 40.0%
!! AGTAGTTGTAGAAGGTGTCA+CGG - Chr8:90436777-90436796 None:intergenic 40.0%
!! CTGCCATGAAAGTTTTATCC+AGG + Chr8:90438150-90438169 MsG0880047755.01.T01:intron 40.0%
!!! AGACTGCTGCGTTTTATTTG+AGG + Chr8:90439931-90439950 MsG0880047755.01.T01:CDS 40.0%
!!! CTGATTTGGTTTTCCTCAAC+CGG - Chr8:90438062-90438081 None:intergenic 40.0%
AAGGGTAAGAAGTGGATGCT+AGG + Chr8:90440144-90440163 MsG0880047755.01.T01:intron 45.0%
AATTTCGGAGACGACGATGA+TGG + Chr8:90436545-90436564 MsG0880047755.01.T01:CDS 45.0%
ACAAACAAGAACGTTAGCGG+CGG - Chr8:90438085-90438104 None:intergenic 45.0%
CATCAAGTAGAGGAATCCCA+TGG + Chr8:90438452-90438471 MsG0880047755.01.T01:intron 45.0%
CATTAGAAACCATACCGGGT+TGG - Chr8:90440108-90440127 None:intergenic 45.0%
CCAAGTAAACGACATGGCTA+AGG - Chr8:90439563-90439582 None:intergenic 45.0%
CCTAGACATTGACATGTTGG+AGG + Chr8:90439704-90439723 MsG0880047755.01.T01:CDS 45.0%
CCTCCAACATGTCAATGTCT+AGG - Chr8:90439707-90439726 None:intergenic 45.0%
CGAAGCAGTGGAATCCATTA+TGG + Chr8:90439485-90439504 MsG0880047755.01.T01:intron 45.0%
CTCAAGTTCTCTTCAGATGG+GGG - Chr8:90438024-90438043 None:intergenic 45.0%
GAAATCTCCAGTTGTGGTTG+TGG + Chr8:90436485-90436504 MsG0880047755.01.T01:CDS 45.0%
GAAGCCATTGTGGAACTTGT+AGG + Chr8:90437488-90437507 MsG0880047755.01.T01:CDS 45.0%
GAGCTAACCCTGTCTTCTAT+TGG - Chr8:90439391-90439410 None:intergenic 45.0%
GCCCATCAAACAGTTTGGTA+AGG - Chr8:90439084-90439103 None:intergenic 45.0%
GCTTGAGTGGAACAAAACCA+TGG - Chr8:90438472-90438491 None:intergenic 45.0%
TAGCAGCCCATCAAACAGTT+TGG - Chr8:90439089-90439108 None:intergenic 45.0%
TATGTGGCAGTGGGAACAAA+TGG + Chr8:90436707-90436726 MsG0880047755.01.T01:CDS 45.0%
TCCAGAAACTTACCATACCC+GGG - Chr8:90438906-90438925 None:intergenic 45.0%
TCGGATATCGGAACAGTATG+TGG - Chr8:90440336-90440355 None:intergenic 45.0%
TGACTTGAGGGAAAACGTGT+AGG - Chr8:90436808-90436827 None:intergenic 45.0%
TGTTTACCGTTACCGTTGAG+AGG + Chr8:90438126-90438145 MsG0880047755.01.T01:intron 45.0%
TTCGCCGTGTACGGTATATT+GGG - Chr8:90437990-90438009 None:intergenic 45.0%
TTGAGTAGCAAAAAAGGGCC+AGG + Chr8:90437653-90437672 MsG0880047755.01.T01:intron 45.0%
TTGGGCATCAAAAGCTTGAG+TGG - Chr8:90438485-90438504 None:intergenic 45.0%
! CCTTAGCCATGTCGTTTACT+TGG + Chr8:90439560-90439579 MsG0880047755.01.T01:intron 45.0%
! CTTAGGTTGTCCCGTTATAG+AGG + Chr8:90439896-90439915 MsG0880047755.01.T01:CDS 45.0%
! GCGGACATGGTGTTAAATGT+TGG + Chr8:90437692-90437711 MsG0880047755.01.T01:intron 45.0%
!! CAAGCATGGAAGCACTTTCA+TGG + Chr8:90436738-90436757 MsG0880047755.01.T01:CDS 45.0%
!! CTCATCAAGTTGGGTGTTTC+TGG - Chr8:90439966-90439985 None:intergenic 45.0%
!! TTTATTTCTAGCCCCGGGTA+TGG + Chr8:90438891-90438910 MsG0880047755.01.T01:intron 45.0%
!!! GTCTCTGGTGTGTTTTGAAG+TGG - Chr8:90438411-90438430 None:intergenic 45.0%
!!! TTTGGTTTTCCTCAACCGGT+CGG - Chr8:90438058-90438077 None:intergenic 45.0%
AAGAGAGAGTTCGCCGTGTA+CGG - Chr8:90437999-90438018 None:intergenic 50.0%
ACTTGTGGCGATGGAGTCTT+TGG - Chr8:90439458-90439477 None:intergenic 50.0%
ATGGATTCCACTGCTTCGAG+AGG - Chr8:90439483-90439502 None:intergenic 50.0%
CAACGTTGCTGAAGCCATTG+TGG + Chr8:90437478-90437497 MsG0880047755.01.T01:CDS 50.0%
CCAGAAACTTACCATACCCG+GGG - Chr8:90438905-90438924 None:intergenic 50.0%
GGTCCCCAATATACCGTACA+CGG + Chr8:90437983-90438002 MsG0880047755.01.T01:intron 50.0%
GTTCGCCGTGTACGGTATAT+TGG - Chr8:90437991-90438010 None:intergenic 50.0%
TCGCCGTGTACGGTATATTG+GGG - Chr8:90437989-90438008 None:intergenic 50.0%
TGGCGATGGAGTCTTTGGTT+GGG - Chr8:90439453-90439472 None:intergenic 50.0%
TGTGGAACTGCTACTGTCTC+TGG - Chr8:90438426-90438445 None:intergenic 50.0%
TTTCATGGCAGGCCTCTCAA+CGG - Chr8:90438141-90438160 None:intergenic 50.0%
! AGGTGTCACGGCATGTTTCA+AGG - Chr8:90436765-90436784 None:intergenic 50.0%
!! TGAGTCATAAAGGCACCGAC+CGG + Chr8:90438040-90438059 MsG0880047755.01.T01:intron 50.0%
AACGTTAGCGGCGGCTGATT+TGG - Chr8:90438076-90438095 None:intergenic 55.0%
CAAGTGTCCTCTCGAAGCAG+TGG + Chr8:90439473-90439492 MsG0880047755.01.T01:intron 55.0%
CCCCGGGTATGGTAAGTTTC+TGG + Chr8:90438902-90438921 MsG0880047755.01.T01:intron 55.0%
CTGCTTCGAGAGGACACTTG+TGG - Chr8:90439473-90439492 None:intergenic 55.0%
GTGGCAGTGGGAACAAATGG+TGG + Chr8:90436710-90436729 MsG0880047755.01.T01:CDS 55.0%
GTGGCGATGGAGTCTTTGGT+TGG - Chr8:90439454-90439473 None:intergenic 55.0%
!! ATAAAGGCACCGACCGGTTG+AGG + Chr8:90438046-90438065 MsG0880047755.01.T01:intron 55.0%
CGAGAGGACACTTGTGGCGA+TGG - Chr8:90439467-90439486 None:intergenic 60.0%
GGCAGGCCTCTCAACGGTAA+CGG - Chr8:90438135-90438154 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 90436431 90440543 90436431 ID=MsG0880047755.01;Name=MsG0880047755.01
Chr8 mRNA 90436431 90440543 90436431 ID=MsG0880047755.01.T01;Parent=MsG0880047755.01;Name=MsG0880047755.01.T01;_AED=0.49;_eAED=0.58;_QI=0|0|0|1|1|1|6|0|409
Chr8 exon 90436431 90436823 90436431 ID=MsG0880047755.01.T01:exon:18281;Parent=MsG0880047755.01.T01
Chr8 exon 90437446 90437561 90437446 ID=MsG0880047755.01.T01:exon:18282;Parent=MsG0880047755.01.T01
Chr8 exon 90438879 90438907 90438879 ID=MsG0880047755.01.T01:exon:18283;Parent=MsG0880047755.01.T01
Chr8 exon 90439682 90440055 90439682 ID=MsG0880047755.01.T01:exon:18284;Parent=MsG0880047755.01.T01
Chr8 exon 90440147 90440214 90440147 ID=MsG0880047755.01.T01:exon:18285;Parent=MsG0880047755.01.T01
Chr8 exon 90440294 90440543 90440294 ID=MsG0880047755.01.T01:exon:18286;Parent=MsG0880047755.01.T01
Chr8 CDS 90436431 90436823 90436431 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Chr8 CDS 90437446 90437561 90437446 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Chr8 CDS 90438879 90438907 90438879 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Chr8 CDS 90439682 90440055 90439682 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Chr8 CDS 90440147 90440214 90440147 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Chr8 CDS 90440294 90440543 90440294 ID=MsG0880047755.01.T01:cds;Parent=MsG0880047755.01.T01
Gene Sequence

>MsG0880047755.01.T01

ATGCCAACTAAGCATGATATTCAAGATGTTCAGTGCTTGCACTACTACGATGATGAAATCTCCAGTTGTGGTTGTGGTTTTATTGGGTTCATGAAAAGCCAAGTGTTTGATTACAATTTCGGAGACGACGATGATGGTGATTCAGAAGAGCTGTTTGAGATAAATTTGAAGAAGGAAAGTAGATTGGATTCAATAAGAGAAGAGGAGTGGTGTGAGAGCAGTACTGTGTTCTCTCTTGATATACACAACAATGATAATAATATAGATGATGTTGTTTATGTGGCAGTGGGAACAAATGGTGGAAGTTCAAGCATGGAAGCACTTTCATGGACCTTGAAACATGCCGTGACACCTTCTACAACTACTGATTCTCTCCTACACGTTTTCCCTCAAGTTAAGGTAGAAATGATGCTTATTGAGGGTGACAACGTTGCTGAAGCCATTGTGGAACTTGTAGGGAAACTAAATATAAGGAAATTGGTGATTGGAACTACCCAATCTAATCTAAGATTCGTTATCATTTTATTTCTAGCCCCGGCAATACAAAGAGGAATTGAAAACCTAGACATTGACATGTTGGAGGATGTTAATGGATTAACCAGTAGCATTTTTAGTTGCAAGACACTCACTGTTCACAAATTGAAAAACCTGTTTGTGAAAGATGACAATTATCAAGTAAATCTTCCTTTACTCAAAGTTCTCTGTATAGATATTATGAGGTTCAATTATCAAGCAACTATTACCAAGTTTTTCTTAGGTTGTCCCGTTATAGAGGAATTGCGAACAAAGACTGCTGCGTTTTATTTGAGGAAGCTTAATCCAGAAACACCCAACTTGATGAGAACAAGTATTCCAAGTCAATATATTTCTGCCTACTTTTTTTCTAAGGTAAAGATTTTGCGTCTAAATATGGGTAAGAAGTGGATGCTAGGAGTGCTTCAACACACTCCAAATCTACAACATATATTACCATTAATCAGGACATGGAAAATGAAATTTATGAGTACAATTGGCAAGAACCACATACTGTTCCGATATCCGAAAGGTTTTTCATCTCAGCTAAGAACTTGCTTGTTTATGGGTTTTAGAGGAAGAAAGTGTGACCTTCAATGTGCAGATTATGTTATGAAACATGCAAAAGTATTACGTAGCATGACAATTCGCAGTGCCTTTTTCATATGCAAAGCACGAAATATTACGGAAATTAGTTGCATGTCCAAAGGGATGTAA
Protein sequence

>MsG0880047755.01.T01

MPTKHDIQDVQCLHYYDDEISSCGCGFIGFMKSQVFDYNFGDDDDGDSEELFEINLKKESRLDSIREEEWCESSTVFSLDIHNNDNNIDDVVYVAVGTNGGSSSMEALSWTLKHAVTPSTTTDSLLHVFPQVKVEMMLIEGDNVAEAIVELVGKLNIRKLVIGTTQSNLRFVIILFLAPAIQRGIENLDIDMLEDVNGLTSSIFSCKTLTVHKLKNLFVKDDNYQVNLPLLKVLCIDIMRFNYQATITKFFLGCPVIEELRTKTAAFYLRKLNPETPNLMRTSIPSQYISAYFFSKVKILRLNMGKKWMLGVLQHTPNLQHILPLIRTWKMKFMSTIGKNHILFRYPKGFSSQLRTCLFMGFRGRKCDLQCADYVMKHAKVLRSMTIRSAFFICKARNITEISCMSKGM*