AlfalfaGEDB | MsG0880047770.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047770.01

KEGG: K06962
GO: -
PFAM: PF05991

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047770.01.T01	XP_013458698.1	72.01	393	29	8	3	380	8	334	2.60E-168	483

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047770.01.T01	P37574	34.109	129	82	3	155	282	3	129	4.50E-12	67.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047770.01.T01	A0A072V3J1	72.010	393	29	8	3	380	8	334	1.24e-168	483

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0880047770.01	0.800659	1.299456e-48	6.084698e-46
MsG0080047884.01	MsG0880047770.01	0.812635	3.839000e-51	2.453656e-48
MsG0080047885.01	MsG0880047770.01	0.815550	8.729721e-52	6.037198e-49
MsG0080047989.01	MsG0880047770.01	0.842651	2.270254e-58	3.464784e-55
MsG0080048065.01	MsG0880047770.01	0.809383	1.944053e-50	1.139791e-47
MsG0080048068.01	MsG0880047770.01	0.803302	3.718923e-49	1.862276e-46
MsG0080048191.01	MsG0880047770.01	0.815434	9.263867e-52	6.386282e-49
MsG0080048528.01	MsG0880047770.01	0.845652	3.553607e-59	5.963564e-56
MsG0080048660.01	MsG0880047770.01	0.802460	5.552847e-49	2.721583e-46
MsG0080048727.01	MsG0880047770.01	0.877210	7.543759e-69	3.762292e-65

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047770.01.T01	MTR_4g134410	72.010	393	29	8	3	380	8	334	3.15e-172	483

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047770.01.T01	AT2G02410	57.492	327	81	5	54	380	39	307	1.58e-121	354
MsG0880047770.01.T01	AT2G02410	59.740	308	66	5	73	380	10	259	2.69e-121	351
MsG0880047770.01.T01	AT2G02410	52.958	355	81	6	54	380	39	335	1.67e-115	340
MsG0880047770.01.T01	AT2G02410	58.681	288	61	5	93	380	13	242	8.08e-109	319
MsG0880047770.01.T01	AT2G02410	59.928	277	53	5	104	380	3	221	3.34e-106	311
MsG0880047770.01.T01	AT2G02410	59.928	277	53	5	104	380	3	221	3.34e-106	311
MsG0880047770.01.T01	AT2G02410	64.953	214	67	4	54	267	39	244	8.92e-92	276
MsG0880047770.01.T01	AT2G02410	64.953	214	67	4	54	267	39	244	8.92e-92	276
MsG0880047770.01.T01	AT2G02410	69.231	195	52	4	73	267	10	196	2.20e-91	274
MsG0880047770.01.T01	AT2G02410	60.963	187	65	4	54	240	39	217	3.30e-70	220

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Find 80 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAGGCCGAGAAAG+AGG	0.474951	8:+90590865	MsG0880047770.01.T01:CDS
AACCATCAACAAGCAAAACA+GGG	0.648456	8:-90590991	None:intergenic
AACGAACAAGATGATGATAA+TGG	0.382465	8:-90590474	None:intergenic
AAGAATATTCCTTGTGATTG+GGG	0.489548	8:-90591168	None:intergenic
AAGAGATGCTTCAAGAGCAA+AGG	0.590832	8:+90591973	MsG0880047770.01.T01:CDS
AAGAGGGATGATGGAGGAAG+AGG	0.379544	8:+90590419	MsG0880047770.01.T01:five_prime_UTR
AAGTGACGACCCAGACTTTG+GGG	0.593977	8:-90591375	None:intergenic
AATCACAAGGAATATTCTTC+CGG	0.528595	8:+90591172	MsG0880047770.01.T01:CDS
AATGAATTTAGTTAGGAAGA+GGG	0.507275	8:+90590403	MsG0880047770.01.T01:five_prime_UTR
AATTTAGGTTTCAGCTTTAA+AGG	0.156682	8:+90591342	MsG0880047770.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCTGCCATAATGAAA+AGG	+	Chr8:90592269-90592288	MsG0880047770.01.T01:intron	30.0%
AACGAACAAGATGATGATAA+TGG	-	Chr8:90590477-90590496	None:intergenic	30.0%
AAGAATATTCCTTGTGATTG+GGG	-	Chr8:90591171-90591190	None:intergenic	30.0%
AAGTCAAATTGAAGACATCT+AGG	-	Chr8:90594447-90594466	None:intergenic	30.0%
AATCACAAGGAATATTCTTC+CGG	+	Chr8:90591172-90591191	MsG0880047770.01.T01:CDS	30.0%
ACATTAGTAAGCAAACCAAT+CGG	-	Chr8:90595914-90595933	None:intergenic	30.0%
AGAATGACAAAAATAGGAGT+AGG	-	Chr8:90593863-90593882	None:intergenic	30.0%
AGAGAAAAAAGACAAGTGAT+TGG	-	Chr8:90592666-90592685	None:intergenic	30.0%
AGATTATATCCTCCCTTAAT+AGG	-	Chr8:90592323-90592342	None:intergenic	30.0%
AGCATAATCAATTGAAATCC+TGG	+	Chr8:90594961-90594980	MsG0880047770.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	90590356	90596051	90590356	ID=MsG0880047770.01;Name=MsG0880047770.01
Chr8	mRNA	90590356	90596051	90590356	ID=MsG0880047770.01.T01;Parent=MsG0880047770.01;Name=MsG0880047770.01.T01;_AED=0.41;_eAED=0.41;_QI=94\|0.66\|0.71\|1\|0.5\|0.57\|7\|0\|380
Chr8	exon	90590356	90590728	90590356	ID=MsG0880047770.01.T01:exon:18893;Parent=MsG0880047770.01.T01
Chr8	exon	90590812	90591249	90590812	ID=MsG0880047770.01.T01:exon:18894;Parent=MsG0880047770.01.T01
Chr8	exon	90591349	90591432	90591349	ID=MsG0880047770.01.T01:exon:18895;Parent=MsG0880047770.01.T01
Chr8	exon	90591663	90591701	90591663	ID=MsG0880047770.01.T01:exon:18896;Parent=MsG0880047770.01.T01
Chr8	exon	90591948	90591994	90591948	ID=MsG0880047770.01.T01:exon:18897;Parent=MsG0880047770.01.T01
Chr8	exon	90594149	90594257	90594149	ID=MsG0880047770.01.T01:exon:18898;Parent=MsG0880047770.01.T01
Chr8	exon	90595905	90596051	90595905	ID=MsG0880047770.01.T01:exon:18899;Parent=MsG0880047770.01.T01
Chr8	five_prime_UTR	90590356	90590449	90590356	ID=MsG0880047770.01.T01:five_prime_utr;Parent=MsG0880047770.01.T01
Chr8	CDS	90590450	90590728	90590450	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90590812	90591249	90590812	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90591349	90591432	90591349	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90591663	90591701	90591663	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90591948	90591994	90591948	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90594149	90594257	90594149	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01
Chr8	CDS	90595905	90596051	90595905	ID=MsG0880047770.01.T01:cds;Parent=MsG0880047770.01.T01

Gene Sequence

>MsG0880047770.01.T01

ATGAAGATGAAACTGAAATTAGTTCCATTATCATCATCTTGTTCGTTAGCAGCTGCTGCAGTACTGTGTGATTCCAATTCCAATTACAATTACAATAAGAAGAAGAGACACAGCAGTATGAATATGATAGTATCCTCCTCCTCCTCCAAAAGCAGCAGCAAGAAGAATGATTCTTCTAATTCTAATTCTAATTCTAATTCTAATTCTCAACCAACTCCAACTCCTCCTAGAATCACTTCTAACGCCAAACAGAACCTTCGCTTCCTCAAGATATGGAAGGAGTACCAAAAACGAAAATCCAGCACTCCAAGACCTTCAACTAGTTACCGTAAAAAGAAGAAGGCCGAGAAAGAGGATCTTGCGGATGACCAAACTGACCTCTATCGTGATCCAACAACCTCCCTCTACTACACAAATCAGCTGGGTCTTGGGGGTTTAATTGACAATGCTGCTGCTGTCCCTGTTTTGCTTGTTGATGGTTACAATGTCTGTGGATATTGGATGAAACTCAAAAAACATTTTCTCAATGGCAAACTTGAACTTGCTCGCCAGAAGCTTATTGACGAACTTATCACCTTTAGTATGCTTAGAGAGGTCAAAGTCGTTGTTGTATTTGATGCCATGATGTCTGGATTCCCCAATCACAAGGAATATTCTTCCGGCATCGACATTGTTTTCTCAACTGATGCATCTGCTGATACATGGATTGAAAAAGAGGTTTCAGCTTTAAAGGAGGATGGTTGCCCCAAAGTCTGGGTCGTCACTTCTGATCACTGTCAACAACAAGCAGCACATGGAGCAGGGGCCTTTGTTTGGAGCAGCAAGGCATTGGTAACCGAGATCAAGGCATCACAAAAGGAGGTTGAAGAGATGCTTCAAGAGCAAAGGAATTTTAGTGAGGCTCTCTCAATTGAGTTAAAGGAAAGCCATGATGAGATGATTGTTCCCGCGTATAACGACATGTGGAACTTAGCTCCTCTTTCCCCAAGAAAAATAATCCTACCGATTGGTTTGCTTACTAATGTTGTTATGTACAGATCCACTTCTTTTCAAGGTAGATTGTTGAAGCACAATCTTGATGCAGAAGTAGTGGATGCTCTGAAGAACCTGAGGCAAAAGTTATCTGATAATGAGTTGAAGTAA

Protein sequence

>MsG0880047770.01.T01

MKMKLKLVPLSSSCSLAAAAVLCDSNSNYNYNKKKRHSSMNMIVSSSSSKSSSKKNDSSNSNSNSNSNSQPTPTPPRITSNAKQNLRFLKIWKEYQKRKSSTPRPSTSYRKKKKAEKEDLADDQTDLYRDPTTSLYYTNQLGLGGLIDNAAAVPVLLVDGYNVCGYWMKLKKHFLNGKLELARQKLIDELITFSMLREVKVVVVFDAMMSGFPNHKEYSSGIDIVFSTDASADTWIEKEVSALKEDGCPKVWVVTSDHCQQQAAHGAGAFVWSSKALVTEIKASQKEVEEMLQEQRNFSEALSIELKESHDEMIVPAYNDMWNLAPLSPRKIILPIGLLTNVVMYRSTSFQGRLLKHNLDAEVVDALKNLRQKLSDNELK*