AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001330 MtrunA17_Chr3g0142871 97.706 654 14 1 1 654 1 653 0.0 1310
Msa0001330 MtrunA17_Chr7g0269901 97.095 654 18 1 1 654 1 653 0.0 1306
Msa0001330 MtrunA17_Chr3g0142891 83.712 264 35 2 393 654 1 258 5.20e-145 421
Msa0001330 MtrunA17_Chr8g0383991 29.439 214 95 3 443 653 140 300 8.01e-21 93.6
Msa0001330 MtrunA17_Chr4g0061421 30.417 240 115 9 98 300 9 233 2.30e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001330 AT3G11450.1 63.939 660 210 11 4 654 7 647 0.0 734
Msa0001330 AT5G06110.1 59.492 669 239 10 2 651 5 660 0.0 713
Msa0001330 AT5G06110.2 59.492 669 239 10 2 651 5 660 0.0 713
Msa0001330 AT5G45420.2 31.959 194 87 3 459 652 158 306 7.81e-19 88.2
Msa0001330 AT5G45420.1 31.959 194 87 3 459 652 158 306 7.81e-19 88.2
Msa0001330 AT5G45420.3 31.959 194 87 3 459 652 158 306 7.81e-19 88.2
Msa0001330 AT1G74250.1 29.167 240 117 6 98 297 12 238 4.85e-16 82.4

Find 159 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTCTTTGCCATATATT+TGG 0.137476 1_1:-3020900 None:intergenic
TTTCTCCTCTTCAGCAATTC+TGG 0.180978 1_1:-3020939 None:intergenic
GCAAGATCATTATGCATTAT+TGG 0.181634 1_1:+3020247 Msa0001330:CDS
TTTACGACTTAAACAGAATA+TGG 0.185714 1_1:+3021979 Msa0001330:three_prime_UTR
TGTTGCAACACGTTTCTTAA+AGG 0.191185 1_1:-3019227 None:intergenic
TCCTTTCTTCTCAGTATTCT+AGG 0.194363 1_1:-3020842 None:intergenic
GCAGTTTGATTTATCATTCT+TGG 0.205958 1_1:+3021919 Msa0001330:exon
CCATGATGAAGGAAAATTTC+AGG 0.207011 1_1:+3021884 Msa0001330:CDS
CCATCTCCTTGAAGTTCCTT+TGG 0.238251 1_1:-3021392 None:intergenic
CTTTGGCTGTATCGGGCTTC+TGG 0.244533 1_1:-3021489 None:intergenic
CATCTCTGGTTAGCTTCCTT+TGG 0.256785 1_1:-3021802 None:intergenic
CAAGATCATTATGCATTATT+GGG 0.286954 1_1:+3020248 Msa0001330:CDS
ATCTAATTGTCTTCCGGTTA+AGG 0.327275 1_1:+3020037 Msa0001330:CDS
AGCTGAGAAGAAAAGGAAAA+AGG 0.327832 1_1:+3020874 Msa0001330:CDS
ATTGTCAACTAGAGAAGAAT+TGG 0.337451 1_1:+3021567 Msa0001330:CDS
TCATATTTCAACGCCTTAAC+CGG 0.338185 1_1:-3020050 None:intergenic
GAGAAAAGTAATCAACAAAA+TGG 0.344685 1_1:+3021256 Msa0001330:CDS
CATCTCCTTGAAGTTCCTTT+GGG 0.350239 1_1:-3021391 None:intergenic
CTGAATCCCGAGATCATAAA+AGG 0.353541 1_1:+3020723 Msa0001330:CDS
ATCTCTGGTTAGCTTCCTTT+GGG 0.356444 1_1:-3021801 None:intergenic
CGAGTAGCTGCAGCTGTACC+TGG 0.359607 1_1:+3021829 Msa0001330:CDS
TACTCACAAGAGCTTGTAGA+TGG 0.365954 1_1:+3019996 Msa0001330:CDS
TGTTTCATCTAATTGTCTTC+CGG 0.373042 1_1:+3020031 Msa0001330:CDS
AATGGCTATGTCAAGGCTAA+TGG 0.383665 1_1:+3021274 Msa0001330:CDS
CTTCTGTTGCAAAGCAGCTT+CGG 0.407096 1_1:-3020993 None:intergenic
CAGCTACTCGTTCCCATCTC+TGG 0.408539 1_1:-3021816 None:intergenic
AGGCAAAAGCTGAGAAGAAA+AGG 0.413153 1_1:+3020867 Msa0001330:CDS
TTGTTGATAATGCTTATAAG+AGG 0.415278 1_1:+3020816 Msa0001330:CDS
AGCAAGAGCAAGAAGAAATC+TGG 0.416590 1_1:+3020206 Msa0001330:CDS
ATTCTTCTCTAGTTGACAAT+GGG 0.419152 1_1:-3021564 None:intergenic
TCATCACCTAGAGATGGAAT+TGG 0.419175 1_1:-3020599 None:intergenic
CCTTTCTTCTCAGTATTCTA+GGG 0.419637 1_1:-3020841 None:intergenic
GAAGAATGTGGTTGAAGATA+AGG 0.419917 1_1:+3020151 Msa0001330:CDS
CTGCTTGTTGCTGTCGGTAC+CGG 0.420172 1_1:-3021688 None:intergenic
TCAAAAGCTTTGGCTGTATC+GGG 0.425452 1_1:-3021496 None:intergenic
CAAGACTTCTACAAGGTGTT+TGG 0.427058 1_1:+3020536 Msa0001330:CDS
CGGCCGTGAAGTGGCGGGAT+CGG 0.427862 1_1:-3019348 None:intergenic
GTAAGAAAGTGTTGAATTTG+CGG 0.428158 1_1:-3019368 None:intergenic
GCTGCTGCACTTAAACTTCT+CGG 0.428929 1_1:+3020095 Msa0001330:CDS
TGATGATAAGTCTTCAATAA+AGG 0.429949 1_1:+3020616 Msa0001330:CDS
TTACGACTTAAACAGAATAT+GGG 0.430216 1_1:+3021980 Msa0001330:three_prime_UTR
AACTTCCTTGAGGTTTCATC+CGG 0.430850 1_1:+3020328 Msa0001330:CDS
TTTGGTATTCCTTTAAAAGC+TGG 0.431430 1_1:+3020660 Msa0001330:CDS
GAGGTTTCATCCGGACAAAC+AGG 0.431529 1_1:+3020337 Msa0001330:CDS
GAGATTGAGCTATTGAGAAA+AGG 0.438019 1_1:+3021355 Msa0001330:CDS
ATCAAAAGCTTTGGCTGTAT+CGG 0.439665 1_1:-3021497 None:intergenic
CAAATATATGGCAAAGAAGT+TGG 0.442593 1_1:+3020901 Msa0001330:CDS
ACTCCGATCCCGCCACTTCA+CGG 0.442916 1_1:+3019345 Msa0001330:five_prime_UTR
CAACACGTTTCTTAAAGGCT+TGG 0.443972 1_1:-3019222 None:intergenic
GGTTTGAGTGATTCAATTGA+AGG 0.448657 1_1:+3019893 Msa0001330:intron
AAGAAATGTATCAAAAGCTT+TGG 0.451091 1_1:-3021506 None:intergenic
ATTTGATATCGAACAATTGA+GGG 0.453929 1_1:+3021144 Msa0001330:CDS
CATTTGATATCGAACAATTG+AGG 0.454216 1_1:+3021143 Msa0001330:CDS
GGGTTCCGAGCGAGAGAGCT+GGG 0.454358 1_1:-3019274 None:intergenic
CCAAAGGAACTTCAAGGAGA+TGG 0.456430 1_1:+3021392 Msa0001330:CDS
CTTCGCAGCTTCAGTTTGCT+CGG 0.456856 1_1:-3020375 None:intergenic
CCAACACTGCATAAGCCTCT+TGG 0.462398 1_1:-3020439 None:intergenic
GATGCAATTGATTGTGCTGC+AGG 0.463598 1_1:-3021541 None:intergenic
ACAGCAGCAGCCTGTTTGTC+CGG 0.463811 1_1:-3020347 None:intergenic
CAAGATCAAACTCATCAGCC+TGG 0.467623 1_1:-3020694 None:intergenic
AGAGGCGTGGTCTGCAGTGC+AGG 0.469414 1_1:+3021747 Msa0001330:CDS
CTGGTTAGCTTCCTTTGGGA+AGG 0.471179 1_1:-3021797 None:intergenic
GTCGTCGTCATCGTCGGTGT+TGG 0.475726 1_1:-3021652 None:intergenic
AGGGTTCCGAGCGAGAGAGC+TGG 0.479150 1_1:-3019275 None:intergenic
TTGTTGGCCAGCCTCCATAA+TGG 0.482363 1_1:+3019944 Msa0001330:exon
CAAAGGAAGCTAACCAGAGA+TGG 0.482494 1_1:+3021803 Msa0001330:CDS
TGAACAGCCATTATGGAGGC+TGG 0.491890 1_1:-3019951 None:intergenic
ATTGTTGTCGTCGTCATCGT+CGG 0.494599 1_1:-3021658 None:intergenic
TTGATACATTTCTTGAGAAG+AGG 0.495249 1_1:+3021515 Msa0001330:CDS
AGCTGCTTTGCAACAGAAGA+AGG 0.496514 1_1:+3020997 Msa0001330:CDS
CACTGGATCACGGTCTTCCC+AGG 0.497559 1_1:-3021847 None:intergenic
GACATACCTCCTTGAAGAGC+TGG 0.507729 1_1:-3019395 None:intergenic
TCAATCTCTTCTTTAGTCCA+AGG 0.508908 1_1:-3021340 None:intergenic
AGCAGGCTACACAGAGAAGA+AGG 0.509420 1_1:+3021312 Msa0001330:CDS
CAGAGAAGAAGGAGAAACCT+TGG 0.509658 1_1:+3021323 Msa0001330:CDS
AGTGAGAATGAAACTAGGTC+TGG 0.512722 1_1:-3019325 None:intergenic
TTGAATTTGCGGCCGTGAAG+TGG 0.517217 1_1:-3019357 None:intergenic
AAGATCAAACTCATCAGCCT+GGG 0.518267 1_1:-3020693 None:intergenic
AATTCTTCTCTAGTTGACAA+TGG 0.519138 1_1:-3021565 None:intergenic
CCCTAGAATACTGAGAAGAA+AGG 0.521673 1_1:+3020841 Msa0001330:CDS
CCGTAGCAAGATATCTAAGA+TGG 0.529700 1_1:-3020277 None:intergenic
CAAAGGAACTTCAAGGAGAT+GGG 0.529793 1_1:+3021393 Msa0001330:CDS
AATTTGCGGCCGTGAAGTGG+CGG 0.530528 1_1:-3019354 None:intergenic
GTTGCTGTCGGTACCGGTGT+TGG 0.530623 1_1:-3021682 None:intergenic
GTTTCAGAATACATTGGCAC+TGG 0.531471 1_1:+3021421 Msa0001330:CDS
AATCAACCAATTCCATCTCT+AGG 0.533477 1_1:+3020593 Msa0001330:CDS
GCATGAAAAGAGTGACCAGC+CGG 0.535447 1_1:-3020074 None:intergenic
ATTTGCGGCCGTGAAGTGGC+GGG 0.539380 1_1:-3019353 None:intergenic
GGAAGCAGTAGTTCTCTAGC+AGG 0.540499 1_1:+3021295 Msa0001330:CDS
ATGCCTAGCTATGATTGAGC+AGG 0.543798 1_1:-3022005 None:intergenic
AGCGGCCAGAATTGCTGAAG+AGG 0.545593 1_1:+3020934 Msa0001330:CDS
ATCATAAAAGGTGGATGGAA+AGG 0.545814 1_1:+3020735 Msa0001330:CDS
TATGGCAAAGAAGTTGGAGG+AGG 0.545831 1_1:+3020907 Msa0001330:CDS
AGTTTCCCAAAGGAACTTCA+AGG 0.546208 1_1:+3021386 Msa0001330:CDS
CGAGCAAACTGAAGCTGCGA+AGG 0.546255 1_1:+3020376 Msa0001330:CDS
CCGAGATCATAAAAGGTGGA+TGG 0.548047 1_1:+3020730 Msa0001330:CDS
AAGTCGTAAAATCTAAAAGC+AGG 0.552023 1_1:-3021966 None:intergenic
TCATTCTTGGCCAATATCTG+TGG 0.552264 1_1:+3021932 Msa0001330:three_prime_UTR
TTGATGCTGCTTGTTGCTGT+CGG 0.552607 1_1:-3021694 None:intergenic
CCAAGAGGCTTATGCAGTGT+TGG 0.555210 1_1:+3020439 Msa0001330:CDS
GCAAACTGAAGCTGCGAAGG+AGG 0.560752 1_1:+3020379 Msa0001330:CDS
AATACTGAGAAGAAAGGAAG+AGG 0.562192 1_1:+3020847 Msa0001330:CDS
CGTCCATTCCTCATAAAAGC+AGG 0.567375 1_1:-3020560 None:intergenic
TGGCTGTATCGGGCTTCTGG+AGG 0.570452 1_1:-3021486 None:intergenic
GACTTATCATCACCTAGAGA+TGG 0.570557 1_1:-3020605 None:intergenic
TATGAGGAATGGACGGTGGT+CGG 0.570845 1_1:+3020568 Msa0001330:CDS
CAACTAGAGAAGAATTGGAA+GGG 0.572911 1_1:+3021572 Msa0001330:CDS
AACACCTTGTAGAAGTCTTG+TGG 0.578361 1_1:-3020533 None:intergenic
ATCGGGCTTCTGGAGGAGAA+CGG 0.578804 1_1:-3021479 None:intergenic
TGTTGATAATGCTTATAAGA+GGG 0.580470 1_1:+3020817 Msa0001330:CDS
GAGGTTGTTTCAGAATACAT+TGG 0.584103 1_1:+3021415 Msa0001330:CDS
GGAGAAACAACGAAAAGCAG+AGG 0.585652 1_1:+3020955 Msa0001330:CDS
GAAGTTGGAGGAGGAAGAAG+CGG 0.588565 1_1:+3020916 Msa0001330:CDS
GCTCCTGCTCAATCATAGCT+AGG 0.589382 1_1:+3022002 Msa0001330:three_prime_UTR
ATATATGGCAAAGAAGTTGG+AGG 0.590878 1_1:+3020904 Msa0001330:CDS
CCGGTGCTATGATAGACTGT+TGG 0.591035 1_1:-3022045 None:intergenic
AAAGGAAGCTAACCAGAGAT+GGG 0.594916 1_1:+3021804 Msa0001330:CDS
AGCAACAAGCAGCATCAACT+CGG 0.597280 1_1:+3021699 Msa0001330:CDS
CCATCTTAGATATCTTGCTA+CGG 0.601973 1_1:+3020277 Msa0001330:CDS
AGCAAGAAGAAATCTGGTGA+CGG 0.602442 1_1:+3020212 Msa0001330:CDS
GAGTAGCTGCAGCTGTACCT+GGG 0.604010 1_1:+3021830 Msa0001330:CDS
AGTATGTGTTGTGACAAGAT+AGG 0.605889 1_1:-3021082 None:intergenic
TCAACAAAATGGCTATGTCA+AGG 0.605950 1_1:+3021267 Msa0001330:CDS
TCAACTAGAGAAGAATTGGA+AGG 0.608211 1_1:+3021571 Msa0001330:CDS
AACTAGAGAAGAATTGGAAG+GGG 0.608691 1_1:+3021573 Msa0001330:CDS
ACAGAAGAAGGTGAAAGAGA+AGG 0.608855 1_1:+3021009 Msa0001330:CDS
TCAAGGAGTTTCAGAACAAG+AGG 0.609387 1_1:+3021729 Msa0001330:CDS
GCTATCATAAAACTTCCTTG+AGG 0.611239 1_1:+3020318 Msa0001330:CDS
ACTCACAAGAGCTTGTAGAT+GGG 0.613229 1_1:+3019997 Msa0001330:CDS
CATGAAAAGAGTGACCAGCC+GGG 0.617908 1_1:-3020073 None:intergenic
GTTCCGAGCGAGAGAGCTGG+GGG 0.618756 1_1:-3019272 None:intergenic
CCAACAGTCTATCATAGCAC+CGG 0.620101 1_1:+3022045 Msa0001330:three_prime_UTR
CTTGTGAGTAAGTAATAAGA+CGG 0.621140 1_1:-3019983 None:intergenic
GGTTCCGAGCGAGAGAGCTG+GGG 0.625997 1_1:-3019273 None:intergenic
GTCTTGTGGATCACAGTCAG+TGG 0.627262 1_1:-3020519 None:intergenic
GGAATACAAAAGTTTCCCAA+AGG 0.628434 1_1:+3021376 Msa0001330:CDS
TCTTGTGGATCACAGTCAGT+GGG 0.629359 1_1:-3020518 None:intergenic
TAAGGCGTTGAAATATGACC+CGG 0.631520 1_1:+3020055 Msa0001330:CDS
ATCAACTCGGAAGACTCTCA+AGG 0.633952 1_1:+3021712 Msa0001330:CDS
AAGCTGGAGAGAGTTTCCCC+AGG 0.640812 1_1:+3020676 Msa0001330:CDS
TTTGTCCGGATGAAACCTCA+AGG 0.646808 1_1:-3020333 None:intergenic
TTTGATATCGAACAATTGAG+GGG 0.649974 1_1:+3021145 Msa0001330:CDS
TGTTTGAACAGCCATTATGG+AGG 0.649988 1_1:-3019955 None:intergenic
GACGACAACAATTCCAACAC+CGG 0.650077 1_1:+3021669 Msa0001330:CDS
TCTTAGATATCTTGCTACGG+AGG 0.651757 1_1:+3020280 Msa0001330:CDS
TCGTAAAATCTAAAAGCAGG+AGG 0.651762 1_1:-3021963 None:intergenic
TGATCCACAAGACTTCTACA+AGG 0.666734 1_1:+3020529 Msa0001330:CDS
AGATCAAACTCATCAGCCTG+GGG 0.670566 1_1:-3020692 None:intergenic
GGTTTGTGTGAGAAAATCGA+AGG 0.671097 1_1:+3021166 Msa0001330:CDS
GCGTTGAAATATGACCCGGC+TGG 0.672506 1_1:+3020059 Msa0001330:CDS
TGAGAAAATCGAAGGCAAAG+AGG 0.673494 1_1:+3021174 Msa0001330:CDS
AATCCCGAGATCATAAAAGG+TGG 0.674327 1_1:+3020726 Msa0001330:CDS
TTCTTCTCTAGTTGACAATG+GGG 0.676675 1_1:-3021563 None:intergenic
GAGTTTCAGAACAAGAGGCG+TGG 0.676797 1_1:+3021734 Msa0001330:CDS
TTGCTGCTGTAAGAATCAGA+AGG 0.678587 1_1:-3020188 None:intergenic
ATCGGAGTGAGAATGAAACT+AGG 0.680736 1_1:-3019330 None:intergenic
AAGCATTATCAACAAGAGTG+CGG 0.686922 1_1:-3020808 None:intergenic
AGGAACTTCAAGGAGATGGG+AGG 0.689319 1_1:+3021396 Msa0001330:CDS
AGATGCTGATAAGAAGAATG+TGG 0.708564 1_1:+3020139 Msa0001330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTATTTGAAATTTTCTT+TGG + chr1_1:3019865-3019884 Msa0001330:intron 10.0%
!!! TTTATTATATTTTGATTTGC+TGG + chr1_1:3019833-3019852 Msa0001330:intron 15.0%
!!! ATCATAAATTCTTCTTTTTA+CGG - chr1_1:3020471-3020490 None:intergenic 15.0%
!!! GAAGCAAGTATTTAATTTTA+GGG - chr1_1:3019297-3019316 None:intergenic 20.0%
!!! TGAAGCAAGTATTTAATTTT+AGG - chr1_1:3019298-3019317 None:intergenic 20.0%
!!! TTTTGATGTTTTGTGTTTTA+TGG + chr1_1:3019552-3019571 Msa0001330:intron 20.0%
!! CTATAATATGCAGTATTATT+AGG + chr1_1:3019671-3019690 Msa0001330:intron 20.0%
!! ACCATTATTGTTGAATTTAA+TGG + chr1_1:3019810-3019829 Msa0001330:intron 20.0%
!! ACCATTAAATTCAACAATAA+TGG - chr1_1:3019814-3019833 None:intergenic 20.0%
!!! ATCAGTTTTTTGTATTTTGT+TGG + chr1_1:3019928-3019947 Msa0001330:five_prime_UTR 20.0%
!! CAATTAGATGAAACAAAAAT+AGG - chr1_1:3020026-3020045 None:intergenic 20.0%
!!! TGAAATAGATGTTCATTTTA+AGG + chr1_1:3020412-3020431 Msa0001330:CDS 20.0%
!!! TCATAAATTCTTCTTTTTAC+GGG - chr1_1:3020470-3020489 None:intergenic 20.0%
!!! TTGATAGTTTCTACAATTTT+TGG + chr1_1:3020642-3020661 Msa0001330:CDS 20.0%
!!! TGTTTTAGTAAAAGCAAAGA+TGG + chr1_1:3019456-3019475 Msa0001330:intron 25.0%
! AACACAAAACATAGATGTTA+TGG - chr1_1:3019498-3019517 None:intergenic 25.0%
!! GTTTTGTGTTTTATGGATTT+AGG + chr1_1:3019559-3019578 Msa0001330:intron 25.0%
!!! GTTTTTAGTTTCAGGTTATT+AGG + chr1_1:3019786-3019805 Msa0001330:intron 25.0%
!! TTGAAATTTTCTTTGGATAC+AGG + chr1_1:3019872-3019891 Msa0001330:intron 25.0%
! CAAGATCATTATGCATTATT+GGG + chr1_1:3020248-3020267 Msa0001330:CDS 25.0%
! TGATGATAAGTCTTCAATAA+AGG + chr1_1:3020616-3020635 Msa0001330:CDS 25.0%
!!! TTGTTGATAATGCTTATAAG+AGG + chr1_1:3020816-3020835 Msa0001330:CDS 25.0%
!!! TGTTGATAATGCTTATAAGA+GGG + chr1_1:3020817-3020836 Msa0001330:CDS 25.0%
! ATTTGATATCGAACAATTGA+GGG + chr1_1:3021144-3021163 Msa0001330:CDS 25.0%
! GAGAAAAGTAATCAACAAAA+TGG + chr1_1:3021256-3021275 Msa0001330:CDS 25.0%
! AAGAAATGTATCAAAAGCTT+TGG - chr1_1:3021509-3021528 None:intergenic 25.0%
! TTTACGACTTAAACAGAATA+TGG + chr1_1:3021979-3021998 Msa0001330:three_prime_UTR 25.0%
! TTACGACTTAAACAGAATAT+GGG + chr1_1:3021980-3021999 Msa0001330:three_prime_UTR 25.0%
! TTCTCTTTCAAACCAAAAAT+GGG - chr1_1:3022079-3022098 None:intergenic 25.0%
!! GTAAGAAAGTGTTGAATTTG+CGG - chr1_1:3019371-3019390 None:intergenic 30.0%
ATGAAGTGAAATAAGAAGCT+CGG - chr1_1:3019715-3019734 None:intergenic 30.0%
!!! ACTTCTCTGTTTTTAGTTTC+AGG + chr1_1:3019778-3019797 Msa0001330:intron 30.0%
!! TTTTGTTTGAACAGCCATTA+TGG - chr1_1:3019961-3019980 None:intergenic 30.0%
CTTGTGAGTAAGTAATAAGA+CGG - chr1_1:3019986-3020005 None:intergenic 30.0%
TGTTTCATCTAATTGTCTTC+CGG + chr1_1:3020031-3020050 Msa0001330:CDS 30.0%
GCAAGATCATTATGCATTAT+TGG + chr1_1:3020247-3020266 Msa0001330:CDS 30.0%
! TTTGGTATTCCTTTAAAAGC+TGG + chr1_1:3020660-3020679 Msa0001330:CDS 30.0%
GAAAAAGGAGTCCAAATATA+TGG + chr1_1:3020889-3020908 Msa0001330:CDS 30.0%
CAACTTCTTTGCCATATATT+TGG - chr1_1:3020903-3020922 None:intergenic 30.0%
CAAATATATGGCAAAGAAGT+TGG + chr1_1:3020901-3020920 Msa0001330:CDS 30.0%
CATTTGATATCGAACAATTG+AGG + chr1_1:3021143-3021162 Msa0001330:CDS 30.0%
TTTGATATCGAACAATTGAG+GGG + chr1_1:3021145-3021164 Msa0001330:CDS 30.0%
TTGATACATTTCTTGAGAAG+AGG + chr1_1:3021515-3021534 Msa0001330:CDS 30.0%
ATTCTTCTCTAGTTGACAAT+GGG - chr1_1:3021567-3021586 None:intergenic 30.0%
AATTCTTCTCTAGTTGACAA+TGG - chr1_1:3021568-3021587 None:intergenic 30.0%
ATTGTCAACTAGAGAAGAAT+TGG + chr1_1:3021567-3021586 Msa0001330:CDS 30.0%
GAAAAAATTTGCCATGATGA+AGG + chr1_1:3021873-3021892 Msa0001330:CDS 30.0%
! GCAGTTTGATTTATCATTCT+TGG + chr1_1:3021919-3021938 Msa0001330:exon 30.0%
GGAAAAAATTCCACAGATAT+TGG - chr1_1:3021945-3021964 None:intergenic 30.0%
AAGTCGTAAAATCTAAAAGC+AGG - chr1_1:3021969-3021988 None:intergenic 30.0%
GTTCTCTTTCAAACCAAAAA+TGG - chr1_1:3022080-3022099 None:intergenic 30.0%
!! ATTTTGTTATCTCAGCTATC+TGG + chr1_1:3022113-3022132 Msa0001330:three_prime_UTR 30.0%
TGTTGCAACACGTTTCTTAA+AGG - chr1_1:3019230-3019249 None:intergenic 35.0%
!! GCACTTGTTTCTATCATTTG+AGG + chr1_1:3019604-3019623 Msa0001330:intron 35.0%
GGTTTGAGTGATTCAATTGA+AGG + chr1_1:3019893-3019912 Msa0001330:intron 35.0%
ATCTAATTGTCTTCCGGTTA+AGG + chr1_1:3020037-3020056 Msa0001330:CDS 35.0%
TCATATTTCAACGCCTTAAC+CGG - chr1_1:3020053-3020072 None:intergenic 35.0%
AGATGCTGATAAGAAGAATG+TGG + chr1_1:3020139-3020158 Msa0001330:CDS 35.0%
GAAGAATGTGGTTGAAGATA+AGG + chr1_1:3020151-3020170 Msa0001330:CDS 35.0%
CCATCTTAGATATCTTGCTA+CGG + chr1_1:3020277-3020296 Msa0001330:CDS 35.0%
GCTATCATAAAACTTCCTTG+AGG + chr1_1:3020318-3020337 Msa0001330:CDS 35.0%
!!! TCATTTTAAGGCAATCCAAG+AGG + chr1_1:3020424-3020443 Msa0001330:CDS 35.0%
AATCAACCAATTCCATCTCT+AGG + chr1_1:3020593-3020612 Msa0001330:CDS 35.0%
! AAACTCTCTCCAGCTTTTAA+AGG - chr1_1:3020672-3020691 None:intergenic 35.0%
ATCATAAAAGGTGGATGGAA+AGG + chr1_1:3020735-3020754 Msa0001330:CDS 35.0%
CAAAACTGTCAGAAAAAGCT+AGG + chr1_1:3020765-3020784 Msa0001330:CDS 35.0%
AAGCATTATCAACAAGAGTG+CGG - chr1_1:3020811-3020830 None:intergenic 35.0%
CCTTTCTTCTCAGTATTCTA+GGG - chr1_1:3020844-3020863 None:intergenic 35.0%
TCCTTTCTTCTCAGTATTCT+AGG - chr1_1:3020845-3020864 None:intergenic 35.0%
AATACTGAGAAGAAAGGAAG+AGG + chr1_1:3020847-3020866 Msa0001330:CDS 35.0%
AGCTGAGAAGAAAAGGAAAA+AGG + chr1_1:3020874-3020893 Msa0001330:CDS 35.0%
ATATATGGCAAAGAAGTTGG+AGG + chr1_1:3020904-3020923 Msa0001330:CDS 35.0%
AGTATGTGTTGTGACAAGAT+AGG - chr1_1:3021085-3021104 None:intergenic 35.0%
TCAACAAAATGGCTATGTCA+AGG + chr1_1:3021267-3021286 Msa0001330:CDS 35.0%
TCAATCTCTTCTTTAGTCCA+AGG - chr1_1:3021343-3021362 None:intergenic 35.0%
GAGATTGAGCTATTGAGAAA+AGG + chr1_1:3021355-3021374 Msa0001330:CDS 35.0%
GGAATACAAAAGTTTCCCAA+AGG + chr1_1:3021376-3021395 Msa0001330:CDS 35.0%
! GAGGTTGTTTCAGAATACAT+TGG + chr1_1:3021415-3021434 Msa0001330:CDS 35.0%
! ATCAAAAGCTTTGGCTGTAT+CGG - chr1_1:3021500-3021519 None:intergenic 35.0%
TTCTTCTCTAGTTGACAATG+GGG - chr1_1:3021566-3021585 None:intergenic 35.0%
TCAACTAGAGAAGAATTGGA+AGG + chr1_1:3021571-3021590 Msa0001330:CDS 35.0%
CAACTAGAGAAGAATTGGAA+GGG + chr1_1:3021572-3021591 Msa0001330:CDS 35.0%
AACTAGAGAAGAATTGGAAG+GGG + chr1_1:3021573-3021592 Msa0001330:CDS 35.0%
!! CTATTTTCAGTTGTTGTTGC+TGG - chr1_1:3021607-3021626 None:intergenic 35.0%
!! AGCTTTAAAAACCTTCCCAA+AGG + chr1_1:3021786-3021805 Msa0001330:CDS 35.0%
!!! TTTTTTCTTGCACTGGATCA+CGG - chr1_1:3021860-3021879 None:intergenic 35.0%
!!! TGGCAAATTTTTTCTTGCAC+TGG - chr1_1:3021867-3021886 None:intergenic 35.0%
! CCTGAAATTTTCCTTCATCA+TGG - chr1_1:3021887-3021906 None:intergenic 35.0%
CCATGATGAAGGAAAATTTC+AGG + chr1_1:3021884-3021903 Msa0001330:CDS 35.0%
TCGTAAAATCTAAAAGCAGG+AGG - chr1_1:3021966-3021985 None:intergenic 35.0%
CCAAAAATGGGACATATATC+CGG - chr1_1:3022067-3022086 None:intergenic 35.0%
CAACACGTTTCTTAAAGGCT+TGG - chr1_1:3019225-3019244 None:intergenic 40.0%
AGTGAGAATGAAACTAGGTC+TGG - chr1_1:3019328-3019347 None:intergenic 40.0%
ATCGGAGTGAGAATGAAACT+AGG - chr1_1:3019333-3019352 None:intergenic 40.0%
!! CTTACTTTTCCAGCTCTTCA+AGG + chr1_1:3019386-3019405 Msa0001330:five_prime_UTR 40.0%
TGTTTGAACAGCCATTATGG+AGG - chr1_1:3019958-3019977 None:intergenic 40.0%
TACTCACAAGAGCTTGTAGA+TGG + chr1_1:3019996-3020015 Msa0001330:CDS 40.0%
ACTCACAAGAGCTTGTAGAT+GGG + chr1_1:3019997-3020016 Msa0001330:CDS 40.0%
!! TAAGGCGTTGAAATATGACC+CGG + chr1_1:3020055-3020074 Msa0001330:CDS 40.0%
TTGCTGCTGTAAGAATCAGA+AGG - chr1_1:3020191-3020210 None:intergenic 40.0%
AGCAAGAGCAAGAAGAAATC+TGG + chr1_1:3020206-3020225 Msa0001330:CDS 40.0%
AGCAAGAAGAAATCTGGTGA+CGG + chr1_1:3020212-3020231 Msa0001330:CDS 40.0%
CCGTAGCAAGATATCTAAGA+TGG - chr1_1:3020280-3020299 None:intergenic 40.0%
TCTTAGATATCTTGCTACGG+AGG + chr1_1:3020280-3020299 Msa0001330:CDS 40.0%
AACTTCCTTGAGGTTTCATC+CGG + chr1_1:3020328-3020347 Msa0001330:CDS 40.0%
TGATCCACAAGACTTCTACA+AGG + chr1_1:3020529-3020548 Msa0001330:CDS 40.0%
AACACCTTGTAGAAGTCTTG+TGG - chr1_1:3020536-3020555 None:intergenic 40.0%
! CAAGACTTCTACAAGGTGTT+TGG + chr1_1:3020536-3020555 Msa0001330:CDS 40.0%
!! TGTTTGGTCCTGCTTTTATG+AGG + chr1_1:3020552-3020571 Msa0001330:CDS 40.0%
!! CTGCTTTTATGAGGAATGGA+CGG + chr1_1:3020561-3020580 Msa0001330:CDS 40.0%
TCATCACCTAGAGATGGAAT+TGG - chr1_1:3020602-3020621 None:intergenic 40.0%
GACTTATCATCACCTAGAGA+TGG - chr1_1:3020608-3020627 None:intergenic 40.0%
AAGATCAAACTCATCAGCCT+GGG - chr1_1:3020696-3020715 None:intergenic 40.0%
CTGAATCCCGAGATCATAAA+AGG + chr1_1:3020723-3020742 Msa0001330:CDS 40.0%
AATCCCGAGATCATAAAAGG+TGG + chr1_1:3020726-3020745 Msa0001330:CDS 40.0%
! CATCCACCTTTTATGATCTC+GGG - chr1_1:3020732-3020751 None:intergenic 40.0%
! CCATCCACCTTTTATGATCT+CGG - chr1_1:3020733-3020752 None:intergenic 40.0%
ACTGTCAGAAAAAGCTAGGA+AGG + chr1_1:3020769-3020788 Msa0001330:CDS 40.0%
CCCTAGAATACTGAGAAGAA+AGG + chr1_1:3020841-3020860 Msa0001330:CDS 40.0%
AGGCAAAAGCTGAGAAGAAA+AGG + chr1_1:3020867-3020886 Msa0001330:CDS 40.0%
TTTCTCCTCTTCAGCAATTC+TGG - chr1_1:3020942-3020961 None:intergenic 40.0%
ACAGAAGAAGGTGAAAGAGA+AGG + chr1_1:3021009-3021028 Msa0001330:CDS 40.0%
AGAAGGAGAAAAAGCTCTTG+CGG + chr1_1:3021026-3021045 Msa0001330:CDS 40.0%
GGTTTGTGTGAGAAAATCGA+AGG + chr1_1:3021166-3021185 Msa0001330:CDS 40.0%
TGAGAAAATCGAAGGCAAAG+AGG + chr1_1:3021174-3021193 Msa0001330:CDS 40.0%
ACTGAGTTGCAAGAAAAACG+TGG + chr1_1:3021228-3021247 Msa0001330:CDS 40.0%
AATGGCTATGTCAAGGCTAA+TGG + chr1_1:3021274-3021293 Msa0001330:CDS 40.0%
AGTTTCCCAAAGGAACTTCA+AGG + chr1_1:3021386-3021405 Msa0001330:CDS 40.0%
CATCTCCTTGAAGTTCCTTT+GGG - chr1_1:3021394-3021413 None:intergenic 40.0%
CAAAGGAACTTCAAGGAGAT+GGG + chr1_1:3021393-3021412 Msa0001330:CDS 40.0%
GTTTCAGAATACATTGGCAC+TGG + chr1_1:3021421-3021440 Msa0001330:CDS 40.0%
! TCAAAAGCTTTGGCTGTATC+GGG - chr1_1:3021499-3021518 None:intergenic 40.0%
TCAAGGAGTTTCAGAACAAG+AGG + chr1_1:3021729-3021748 Msa0001330:CDS 40.0%
!! ATCTCTGGTTAGCTTCCTTT+GGG - chr1_1:3021804-3021823 None:intergenic 40.0%
AAAGGAAGCTAACCAGAGAT+GGG + chr1_1:3021804-3021823 Msa0001330:CDS 40.0%
TCATTCTTGGCCAATATCTG+TGG + chr1_1:3021932-3021951 Msa0001330:three_prime_UTR 40.0%
! CCGGATATATGTCCCATTTT+TGG + chr1_1:3022064-3022083 Msa0001330:three_prime_UTR 40.0%
! ACTTTTCCAGCTCTTCAAGG+AGG + chr1_1:3019389-3019408 Msa0001330:five_prime_UTR 45.0%
GCTGCTGCACTTAAACTTCT+CGG + chr1_1:3020095-3020114 Msa0001330:CDS 45.0%
TTTGTCCGGATGAAACCTCA+AGG - chr1_1:3020336-3020355 None:intergenic 45.0%
TCTTGTGGATCACAGTCAGT+GGG - chr1_1:3020521-3020540 None:intergenic 45.0%
!! GGTCCTGCTTTTATGAGGAA+TGG + chr1_1:3020557-3020576 Msa0001330:CDS 45.0%
CGTCCATTCCTCATAAAAGC+AGG - chr1_1:3020563-3020582 None:intergenic 45.0%
! CTTTTATGAGGAATGGACGG+TGG + chr1_1:3020564-3020583 Msa0001330:CDS 45.0%
AGATCAAACTCATCAGCCTG+GGG - chr1_1:3020695-3020714 None:intergenic 45.0%
CAAGATCAAACTCATCAGCC+TGG - chr1_1:3020697-3020716 None:intergenic 45.0%
CCGAGATCATAAAAGGTGGA+TGG + chr1_1:3020730-3020749 Msa0001330:CDS 45.0%
TATGGCAAAGAAGTTGGAGG+AGG + chr1_1:3020907-3020926 Msa0001330:CDS 45.0%
GGAGAAACAACGAAAAGCAG+AGG + chr1_1:3020955-3020974 Msa0001330:CDS 45.0%
CTTCTGTTGCAAAGCAGCTT+CGG - chr1_1:3020996-3021015 None:intergenic 45.0%
! AGCTGCTTTGCAACAGAAGA+AGG + chr1_1:3020997-3021016 Msa0001330:CDS 45.0%
CAGAGAAGAAGGAGAAACCT+TGG + chr1_1:3021323-3021342 Msa0001330:CDS 45.0%
CCATCTCCTTGAAGTTCCTT+TGG - chr1_1:3021395-3021414 None:intergenic 45.0%
CCAAAGGAACTTCAAGGAGA+TGG + chr1_1:3021392-3021411 Msa0001330:CDS 45.0%
GATGCAATTGATTGTGCTGC+AGG - chr1_1:3021544-3021563 None:intergenic 45.0%
ATTGTTGTCGTCGTCATCGT+CGG - chr1_1:3021661-3021680 None:intergenic 45.0%
GACGACAACAATTCCAACAC+CGG + chr1_1:3021669-3021688 Msa0001330:CDS 45.0%
! TTGATGCTGCTTGTTGCTGT+CGG - chr1_1:3021697-3021716 None:intergenic 45.0%
AGCAACAAGCAGCATCAACT+CGG + chr1_1:3021699-3021718 Msa0001330:CDS 45.0%
ATCAACTCGGAAGACTCTCA+AGG + chr1_1:3021712-3021731 Msa0001330:CDS 45.0%
!! CATCTCTGGTTAGCTTCCTT+TGG - chr1_1:3021805-3021824 None:intergenic 45.0%
CAAAGGAAGCTAACCAGAGA+TGG + chr1_1:3021803-3021822 Msa0001330:CDS 45.0%
ATGCCTAGCTATGATTGAGC+AGG - chr1_1:3022008-3022027 None:intergenic 45.0%
CCAACAGTCTATCATAGCAC+CGG + chr1_1:3022045-3022064 Msa0001330:three_prime_UTR 45.0%
TTGAATTTGCGGCCGTGAAG+TGG - chr1_1:3019360-3019379 None:intergenic 50.0%
GACATACCTCCTTGAAGAGC+TGG - chr1_1:3019398-3019417 None:intergenic 50.0%
TTGTTGGCCAGCCTCCATAA+TGG + chr1_1:3019944-3019963 Msa0001330:exon 50.0%
TGAACAGCCATTATGGAGGC+TGG - chr1_1:3019954-3019973 None:intergenic 50.0%
CATGAAAAGAGTGACCAGCC+GGG - chr1_1:3020076-3020095 None:intergenic 50.0%
GCATGAAAAGAGTGACCAGC+CGG - chr1_1:3020077-3020096 None:intergenic 50.0%
GAGGTTTCATCCGGACAAAC+AGG + chr1_1:3020337-3020356 Msa0001330:CDS 50.0%
! CTTCGCAGCTTCAGTTTGCT+CGG - chr1_1:3020378-3020397 None:intergenic 50.0%
CCAACACTGCATAAGCCTCT+TGG - chr1_1:3020442-3020461 None:intergenic 50.0%
CCAAGAGGCTTATGCAGTGT+TGG + chr1_1:3020439-3020458 Msa0001330:CDS 50.0%
GTCTTGTGGATCACAGTCAG+TGG - chr1_1:3020522-3020541 None:intergenic 50.0%
TATGAGGAATGGACGGTGGT+CGG + chr1_1:3020568-3020587 Msa0001330:CDS 50.0%
GAAGTTGGAGGAGGAAGAAG+CGG + chr1_1:3020916-3020935 Msa0001330:CDS 50.0%
GGAGAAAAAGCTCTTGCGGA+AGG + chr1_1:3021030-3021049 Msa0001330:CDS 50.0%
GGAAGCAGTAGTTCTCTAGC+AGG + chr1_1:3021295-3021314 Msa0001330:CDS 50.0%
AGCAGGCTACACAGAGAAGA+AGG + chr1_1:3021312-3021331 Msa0001330:CDS 50.0%
AGGAACTTCAAGGAGATGGG+AGG + chr1_1:3021396-3021415 Msa0001330:CDS 50.0%
GAGTTTCAGAACAAGAGGCG+TGG + chr1_1:3021734-3021753 Msa0001330:CDS 50.0%
!! CTGGTTAGCTTCCTTTGGGA+AGG - chr1_1:3021800-3021819 None:intergenic 50.0%
GCTCCTGCTCAATCATAGCT+AGG + chr1_1:3022002-3022021 Msa0001330:three_prime_UTR 50.0%
!! CCGGTGCTATGATAGACTGT+TGG - chr1_1:3022048-3022067 None:intergenic 50.0%
AATTTGCGGCCGTGAAGTGG+CGG - chr1_1:3019357-3019376 None:intergenic 55.0%
GCGTTGAAATATGACCCGGC+TGG + chr1_1:3020059-3020078 Msa0001330:CDS 55.0%
ACAGCAGCAGCCTGTTTGTC+CGG - chr1_1:3020350-3020369 None:intergenic 55.0%
CGAGCAAACTGAAGCTGCGA+AGG + chr1_1:3020376-3020395 Msa0001330:CDS 55.0%
GCAAACTGAAGCTGCGAAGG+AGG + chr1_1:3020379-3020398 Msa0001330:CDS 55.0%
AAGCTGGAGAGAGTTTCCCC+AGG + chr1_1:3020676-3020695 Msa0001330:CDS 55.0%
AGCGGCCAGAATTGCTGAAG+AGG + chr1_1:3020934-3020953 Msa0001330:CDS 55.0%
! ATCGGGCTTCTGGAGGAGAA+CGG - chr1_1:3021482-3021501 None:intergenic 55.0%
CTTTGGCTGTATCGGGCTTC+TGG - chr1_1:3021492-3021511 None:intergenic 55.0%
! CTGCTTGTTGCTGTCGGTAC+CGG - chr1_1:3021691-3021710 None:intergenic 55.0%
CAGCTACTCGTTCCCATCTC+TGG - chr1_1:3021819-3021838 None:intergenic 55.0%
GAGTAGCTGCAGCTGTACCT+GGG + chr1_1:3021830-3021849 Msa0001330:CDS 55.0%
ACTCCGATCCCGCCACTTCA+CGG + chr1_1:3019345-3019364 Msa0001330:five_prime_UTR 60.0%
ATTTGCGGCCGTGAAGTGGC+GGG - chr1_1:3019356-3019375 None:intergenic 60.0%
TGGCTGTATCGGGCTTCTGG+AGG - chr1_1:3021489-3021508 None:intergenic 60.0%
GTCGTCGTCATCGTCGGTGT+TGG - chr1_1:3021655-3021674 None:intergenic 60.0%
!! GTTGCTGTCGGTACCGGTGT+TGG - chr1_1:3021685-3021704 None:intergenic 60.0%
CGAGTAGCTGCAGCTGTACC+TGG + chr1_1:3021829-3021848 Msa0001330:CDS 60.0%
CACTGGATCACGGTCTTCCC+AGG - chr1_1:3021850-3021869 None:intergenic 60.0%
AGTCCCCCAGCTCTCTCGCT+CGG + chr1_1:3019269-3019288 Msa0001330:five_prime_UTR 65.0%
GTTCCGAGCGAGAGAGCTGG+GGG - chr1_1:3019275-3019294 None:intergenic 65.0%
GGTTCCGAGCGAGAGAGCTG+GGG - chr1_1:3019276-3019295 None:intergenic 65.0%
GGGTTCCGAGCGAGAGAGCT+GGG - chr1_1:3019277-3019296 None:intergenic 65.0%
AGGGTTCCGAGCGAGAGAGC+TGG - chr1_1:3019278-3019297 None:intergenic 65.0%
! AGAGGCGTGGTCTGCAGTGC+AGG + chr1_1:3021747-3021766 Msa0001330:CDS 65.0%
! CGGCCGTGAAGTGGCGGGAT+CGG - chr1_1:3019351-3019370 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3019216 3022287 3019216 ID=Msa0001330;Name=Msa0001330
chr1_1 mRNA 3019216 3022287 3019216 ID=Msa0001330-mRNA-1;Parent=Msa0001330;Name=Msa0001330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=264|1|1|1|0|1|2|360|654
chr1_1 exon 3019216 3019410 3019216 ID=Msa0001330-mRNA-1:exon:668;Parent=Msa0001330-mRNA-1
chr1_1 exon 3019894 3022287 3019894 ID=Msa0001330-mRNA-1:exon:669;Parent=Msa0001330-mRNA-1
chr1_1 five_prime_UTR 3019216 3019410 3019216 ID=Msa0001330-mRNA-1:five_prime_utr;Parent=Msa0001330-mRNA-1
chr1_1 five_prime_UTR 3019894 3019962 3019894 ID=Msa0001330-mRNA-1:five_prime_utr;Parent=Msa0001330-mRNA-1
chr1_1 CDS 3019963 3021927 3019963 ID=Msa0001330-mRNA-1:cds;Parent=Msa0001330-mRNA-1
chr1_1 three_prime_UTR 3021928 3022287 3021928 ID=Msa0001330-mRNA-1:three_prime_utr;Parent=Msa0001330-mRNA-1
Gene Sequence

>Msa0001330

ATGGCTGTTCAAACAAAATACCGTCTTATTACTTACTCACAAGAGCTTGTAGATGGGCAGCCTATTTTTGTTTCATCTAATTGTCTTCCGGTTAAGGCGTTGAAATATGACCCGGCTGGTCACTCTTTTCATGCTGCTGCACTTAAACTTCTCGGTGTTACAAAAGAAGATAACAAAGATGCTGATAAGAAGAATGTGGTTGAAGATAAGGAACATGTTTATTTGCCTTCTGATTCTTACAGCAGCAAGAGCAAGAAGAAATCTGGTGACGGAGACAAGCAACAGCAAGATCATTATGCATTATTGGGTTTGAGCCATCTTAGATATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCATAAAACTTCCTTGAGGTTTCATCCGGACAAACAGGCTGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCGAAGGAGGCAAAGAAGATTGAAATAGATGTTCATTTTAAGGCAATCCAAGAGGCTTATGCAGTGTTGGTCGATCCCGTAAAAAGAAGAATTTATGATTCTACAGACGAGTTTGATGATGAGATTCCCACTGACTGTGATCCACAAGACTTCTACAAGGTGTTTGGTCCTGCTTTTATGAGGAATGGACGGTGGTCGGTTAATCAACCAATTCCATCTCTAGGTGATGATAAGTCTTCAATAAAGGAAGTTGATAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCTGATGAGTTTGATCTTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAAAATGCAAAACTGTCAGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTGAGAAGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAATATATGGCAAAGAAGTTGGAGGAGGAAGAAGCGGCCAGAATTGCTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGGTGAAAGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTATCTTGTCACAACACATACTTGATATTGCTGAAGACGATGTAGAAGAGCTTTGCATGTCATTTGATATCGAACAATTGAGGGGTTTGTGTGAGAAAATCGAAGGCAAAGAGGTGTTAGAGCAAGCAGAAGCTCTAAAAGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTATGTCAAGGCTAATGGAAGCAGTAGTTCTCTAGCAGGCTACACAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACCGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAGAGGAAACCTGCAGCACAATCAATTGCATCCCCATTGTCAACTAGAGAAGAATTGGAAGGGGTCTCAATACCAGCAACAACAACTGAAAATAGTGATGCAAAAACAACAACTACTATACCAACACCGACGATGACGACGACAACAATTCCAACACCGGTACCGACAGCAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGGCGTGGTCTGCAGTGCAGGAAAGAGCATTAGTTCAAGCTTTAAAAACCTTCCCAAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACCGTGATCCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA
Protein sequence

>Msa0001330

MAVQTKYRLITYSQELVDGQPIFVSSNCLPVKALKYDPAGHSFHAAALKLLGVTKEDNKDADKKNVVEDKEHVYLPSDSYSSKSKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSWREFPQADEFDLEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKKLEEEEAARIAEEEKQRKAEEDKKAAEAALQQKKVKEKEKKLLRKERTRLRTLSRPILSQHILDIAEDDVEELCMSFDIEQLRGLCEKIEGKEVLEQAEALKDALSCKKNVVDEKSNQQNGYVKANGSSSSLAGYTEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQSIASPLSTREELEGVSIPATTTENSDAKTTTTIPTPTMTTTTIPTPVPTATSSINSEDSQGVSEQEAWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKENFRNKKTAV*