AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712560 MtrunA17_Chr5g0397161 95.722 374 9 1 1 367 1 374 0.0 735
Msa0712560 MtrunA17_Chr6g0470241 62.567 374 116 5 1 367 1 357 3.96e-164 463
Msa0712560 MtrunA17_Chr5g0398901 38.835 103 63 0 1 103 1 103 9.32e-17 81.6
Msa0712560 MtrunA17_Chr5g0398901 29.060 117 83 0 1 117 391 507 6.34e-12 67.0
Msa0712560 MtrunA17_Chr3g0097231 34.211 114 75 0 2 115 11 124 9.49e-16 78.6
Msa0712560 MtrunA17_Chr7g0274241 31.250 112 77 0 2 113 335 446 3.64e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712560 AT4G23570.1 65.323 372 100 8 1 366 1 349 5.66e-157 445
Msa0712560 AT4G23570.2 65.323 372 100 8 1 366 1 349 5.66e-157 445
Msa0712560 AT4G11260.1 63.415 369 122 5 1 367 1 358 1.84e-156 444
Msa0712560 AT4G23570.3 65.147 373 100 9 1 366 1 350 3.42e-155 440
Msa0712560 AT2G42810.2 29.114 158 111 1 2 159 13 169 3.08e-16 80.5
Msa0712560 AT2G42810.3 29.114 158 111 1 2 159 13 169 3.37e-16 80.5
Msa0712560 AT2G42810.1 31.944 144 96 2 2 145 13 154 7.27e-16 79.3
Msa0712560 AT2G42810.5 31.944 144 96 2 2 145 13 154 7.27e-16 79.3
Msa0712560 AT2G42810.4 31.944 144 96 2 2 145 13 154 7.27e-16 79.3
Msa0712560 AT4G12400.1 34.783 115 75 0 1 115 1 115 1.04e-15 79.0
Msa0712560 AT4G12400.1 31.858 113 77 0 1 113 368 480 1.62e-13 72.0
Msa0712560 AT4G12400.2 34.783 115 75 0 1 115 1 115 1.10e-15 79.0
Msa0712560 AT4G12400.2 31.858 113 77 0 1 113 368 480 1.52e-13 72.4
Msa0712560 AT1G04190.1 34.091 132 77 2 5 129 18 146 1.31e-15 77.4
Msa0712560 AT1G62740.1 38.614 101 62 0 1 101 1 101 7.39e-15 76.3
Msa0712560 AT1G62740.1 29.365 126 89 0 1 126 381 506 4.08e-12 67.8
Msa0712560 AT1G12270.1 36.634 101 64 0 1 101 1 101 2.19e-14 74.7
Msa0712560 AT1G12270.1 29.365 126 89 0 1 126 382 507 5.20e-12 67.4
Msa0712560 AT3G04710.3 34.737 95 62 0 8 102 558 652 3.05e-13 71.6
Msa0712560 AT3G04710.1 31.429 105 72 0 8 112 334 438 4.74e-13 70.5
Msa0712560 AT3G04710.2 31.429 105 72 0 8 112 333 437 4.91e-13 70.5
Msa0712560 AT4G22670.1 38.636 88 54 0 2 89 123 210 5.69e-12 67.0

Find 102 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAGACGAATTTCAATTT+TGG 0.202093 5_1:+4394585 None:intergenic
TAAAATTCAAACCTGTATTT+TGG 0.207831 5_1:+4395607 None:intergenic
AGATAAGCTTTAGACAAATT+AGG 0.217599 5_1:+4396754 None:intergenic
TCATGTCCTCATCTGCATTT+TGG 0.223925 5_1:+4393539 None:intergenic
TGCATTTGTTTGGGATTCTT+TGG 0.233284 5_1:+4395645 None:intergenic
GTACATTTGGAGTGTATATT+TGG 0.235794 5_1:-4392779 Msa0712560:three_prime_UTR
CTGAAGGCACGATTATCTTT+TGG 0.246738 5_1:+4394509 None:intergenic
ACCACAACTTTGCACTTATC+AGG 0.255504 5_1:+4394616 None:intergenic
TTGAATCAAATTAGTGAATC+TGG 0.262555 5_1:+4396550 None:intergenic
AATTACCAACCTCGATTGTT+TGG 0.273321 5_1:-4394813 Msa0712560:CDS
GATAAGCTTTAGACAAATTA+GGG 0.273607 5_1:+4396755 None:intergenic
CTGGTGCAACTGCATTTGTT+TGG 0.277385 5_1:+4395635 None:intergenic
ATTGACTAATTTGCATTTGC+TGG 0.284570 5_1:-4393127 Msa0712560:three_prime_UTR
CAAAAGCTGAAGCAATTAAT+TGG 0.291230 5_1:-4394564 Msa0712560:CDS
CAACCACTTCTTCTGGCTTC+TGG 0.307212 5_1:+4395072 None:intergenic
AACAGACGCAGCAGATGATT+TGG 0.309310 5_1:+4395705 None:intergenic
AGCTGTTTCTGATGCTAATA+AGG 0.317013 5_1:-4396791 Msa0712560:CDS
ATTGTCACAACCACTTCTTC+TGG 0.326332 5_1:+4395065 None:intergenic
CTCAAATACTGCTTATGCTT+TGG 0.329463 5_1:-4393253 Msa0712560:three_prime_UTR
TTCTTCACCTCCATGCCTTC+CGG 0.334065 5_1:+4393296 None:intergenic
CACTTTGGAAATACTAAGTA+TGG 0.339683 5_1:-4392816 Msa0712560:three_prime_UTR
GCAGATGATTTGGGTTCATT+TGG 0.361318 5_1:+4395715 None:intergenic
TGGTGCAACTGCATTTGTTT+GGG 0.369271 5_1:+4395636 None:intergenic
GAACAGTGCTTTCAACTGAT+TGG 0.383406 5_1:-4393355 Msa0712560:CDS
CATCACTCCTATCACACATA+TGG 0.384343 5_1:+4395674 None:intergenic
AGTGTTACCATTGATGTTCC+TGG 0.384771 5_1:-4394849 Msa0712560:CDS
GATCAACATGTTCGTACATT+TGG 0.388225 5_1:-4392792 Msa0712560:three_prime_UTR
TGCTAAGATTGCACTTGAAA+AGG 0.395581 5_1:-4396597 Msa0712560:CDS
ATTTGGGTTCATTTGGTGGT+AGG 0.397979 5_1:+4395722 None:intergenic
GCTAAGATTGCACTTGAAAA+GGG 0.398330 5_1:-4396596 Msa0712560:CDS
TGGGATCGATTTCGATGGCT+TGG 0.399437 5_1:+4396875 None:intergenic
GACTAAGGATTGGGATAAGT+TGG 0.404465 5_1:-4394135 Msa0712560:CDS
CAAATTAGGGTTCAATTGAA+TGG 0.412131 5_1:+4396768 None:intergenic
ACAGACGCAGCAGATGATTT+GGG 0.413414 5_1:+4395706 None:intergenic
CAAAAGATAATCGTGCCTTC+AGG 0.416666 5_1:-4394508 Msa0712560:intron
AGCAATTAATTGGACATCTC+TGG 0.420967 5_1:-4394554 Msa0712560:CDS
GTTGTGACAATATTTGCAAA+AGG 0.432373 5_1:-4395053 Msa0712560:CDS
GACTTTGATGACGGATATGC+AGG 0.432961 5_1:+4394161 None:intergenic
ATTTCGGTTGTGAAACACTT+TGG 0.439531 5_1:-4392831 Msa0712560:three_prime_UTR
AAGGCATGGAGGTGAAGAAA+TGG 0.447230 5_1:-4393292 Msa0712560:CDS
ATTTGCATTTGCTGGGGAAG+TGG 0.448866 5_1:-4393119 Msa0712560:three_prime_UTR
TTGACTAATTTGCATTTGCT+GGG 0.450378 5_1:-4393126 Msa0712560:three_prime_UTR
GGGATCGATTTCGATGGCTT+GGG 0.456570 5_1:+4396876 None:intergenic
GAGAAAGAAGAAAAGCTTGA+TGG 0.457639 5_1:-4393598 Msa0712560:CDS
TTTGGGTTCATTTGGTGGTA+GGG 0.457656 5_1:+4395723 None:intergenic
GAAAATGTTGTTGTGGACTT+TGG 0.457793 5_1:-4395020 Msa0712560:CDS
TTCAACTGATTGGAAAGAAG+TGG 0.459056 5_1:-4393345 Msa0712560:CDS
CAAAGTCAAGGACTAAGGAT+TGG 0.459819 5_1:-4394145 Msa0712560:CDS
AACCAAAATTGAAATTCGTC+TGG 0.463865 5_1:-4394587 Msa0712560:CDS
GTTGGTAATTGTAGGCATCT+TGG 0.464918 5_1:+4394826 None:intergenic
GGCGAAGAGATTGGCGTTGG+TGG 0.466384 5_1:+4396855 None:intergenic
CAATCGAGGTTGGTAATTGT+AGG 0.468328 5_1:+4394818 None:intergenic
TGCTCGATCGGCGAAGAGAT+TGG 0.468339 5_1:+4396846 None:intergenic
ATGATACCCATATGTGTGAT+AGG 0.471919 5_1:-4395681 Msa0712560:CDS
GATGATTTGGGTTCATTTGG+TGG 0.474276 5_1:+4395718 None:intergenic
CACCAGTCAGACCAAAATAC+AGG 0.477363 5_1:-4395618 Msa0712560:intron
AAAGTCAAGGACTAAGGATT+GGG 0.477566 5_1:-4394144 Msa0712560:CDS
TAATTGTAGGCATCTTGGCC+AGG 0.499111 5_1:+4394831 None:intergenic
GTCATCAAAGTCAAGGACTA+AGG 0.505114 5_1:-4394150 Msa0712560:CDS
TTGTGACAATATTTGCAAAA+GGG 0.517563 5_1:-4395052 Msa0712560:CDS
CTAAAGCTTATCTTCGCAAA+GGG 0.517803 5_1:-4396744 Msa0712560:intron
ATCACTCCTATCACACATAT+GGG 0.523581 5_1:+4395675 None:intergenic
AGGCATGGAGGTGAAGAAAT+GGG 0.525573 5_1:-4393291 Msa0712560:CDS
GTGGGATCAAAGAAGGTGGA+AGG 0.527275 5_1:-4393326 Msa0712560:CDS
ACCTGATAAGTGCAAAGTTG+TGG 0.535317 5_1:-4394617 Msa0712560:CDS
TCTAAAGCTTATCTTCGCAA+AGG 0.536711 5_1:-4396745 Msa0712560:CDS
TGTCAACGCTTCATTGCTGC+TGG 0.540905 5_1:-4396524 Msa0712560:intron
TTGGTGGTAGGGTGCTCGTA+AGG 0.545824 5_1:+4395734 None:intergenic
TTAGTCCTTGACTTTGATGA+CGG 0.547734 5_1:+4394152 None:intergenic
ATACAATTGATCACCATACT+TGG 0.548968 5_1:+4392986 None:intergenic
GAAAGAAGTGGGATCAAAGA+AGG 0.549782 5_1:-4393333 Msa0712560:CDS
AGAAGTGGGATCAAAGAAGG+TGG 0.550429 5_1:-4393330 Msa0712560:CDS
TCAACTGATTGGAAAGAAGT+GGG 0.552602 5_1:-4393344 Msa0712560:CDS
AGGAAGTCCTCCGGAAGGCA+TGG 0.553293 5_1:-4393306 Msa0712560:CDS
ACATTGCAGCTGGAGTCAAA+TGG 0.555676 5_1:-4393377 Msa0712560:intron
GATATAAGATTGTGCTCGAT+CGG 0.556317 5_1:+4396834 None:intergenic
CCTTTCCAAACAATCGAGGT+TGG 0.558787 5_1:+4394808 None:intergenic
TTCACCTCCATGCCTTCCGG+AGG 0.562191 5_1:+4393299 None:intergenic
ATCGGCGAAGAGATTGGCGT+TGG 0.564003 5_1:+4396852 None:intergenic
TTAGTGAATCTGGAATCATC+AGG 0.564312 5_1:+4396560 None:intergenic
TTACCAGAAGCCAGAAGAAG+TGG 0.567554 5_1:-4395075 Msa0712560:CDS
ATCTTGGCCAGGAACATCAA+TGG 0.567721 5_1:+4394842 None:intergenic
GTTGGTGGGATCGATTTCGA+TGG 0.572118 5_1:+4396870 None:intergenic
CCAACCTCGATTGTTTGGAA+AGG 0.572336 5_1:-4394808 Msa0712560:intron
GCGAAGAGATTGGCGTTGGT+GGG 0.574698 5_1:+4396856 None:intergenic
GAAGGTGGAAGGAAGTCCTC+CGG 0.593651 5_1:-4393315 Msa0712560:CDS
GACATCTCTGGAATATAGCA+AGG 0.594841 5_1:-4394542 Msa0712560:CDS
CTAAGATTGCACTTGAAAAG+GGG 0.595811 5_1:-4396595 Msa0712560:CDS
ACCAGCAGAAAATGTTGTTG+TGG 0.599108 5_1:-4395027 Msa0712560:CDS
TTTCTGCAGTTCAATCTGAA+AGG 0.605938 5_1:-4394184 Msa0712560:intron
TGACTAATTTGCATTTGCTG+AGG 0.614304 5_1:-4392939 Msa0712560:three_prime_UTR
CATATCCGTCATCAAAGTCA+AGG 0.618238 5_1:-4394157 Msa0712560:CDS
GTTACCTTTCCAAACAATCG+AGG 0.633356 5_1:+4394804 None:intergenic
TAAGATTGCACTTGAAAAGG+GGG 0.634057 5_1:-4396594 Msa0712560:CDS
TATTTACCAAAATGCAGATG+AGG 0.640349 5_1:-4393545 Msa0712560:CDS
AAAATGCAGATGAGGACATG+AGG 0.646902 5_1:-4393537 Msa0712560:CDS
TGGTAACAACTAATTCACAA+TGG 0.651694 5_1:-4392759 None:intergenic
AAGCATAAGCAGTATTTGAG+TGG 0.656326 5_1:+4393256 None:intergenic
TGACTAATTTGCATTTGCTG+GGG 0.656804 5_1:-4393125 Msa0712560:three_prime_UTR
GTGGAAGGAAGTCCTCCGGA+AGG 0.675797 5_1:-4393311 Msa0712560:CDS
AAGTCCTCCGGAAGGCATGG+AGG 0.703156 5_1:-4393303 Msa0712560:CDS
GGCTTGGGAGTAGAAATCAA+CGG 0.721412 5_1:+4396891 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAATATTTATGTTTTT+AGG - chr5_1:4393124-4393143 Msa0712560:three_prime_UTR 10.0%
!!! TTTGAATATTTATGTTTTTA+GGG - chr5_1:4393125-4393144 Msa0712560:three_prime_UTR 10.0%
!!! TGATTTTTGAAAATTTTATT+TGG - chr5_1:4393362-4393381 Msa0712560:CDS 10.0%
!! ATTTAAATAAATCAAAAATC+AGG + chr5_1:4393468-4393487 None:intergenic 10.0%
!! ATTATAGTTATACAATAATA+AGG + chr5_1:4394426-4394445 None:intergenic 10.0%
!!! TTTTAATCAAAAGTTTTTAA+GGG - chr5_1:4394486-4394505 Msa0712560:intron 10.0%
!!! TAATTTTCTCTAATTATTAT+CGG - chr5_1:4395462-4395481 Msa0712560:intron 10.0%
!!! TTATGTTTTTATTTATTTAG+GGG - chr5_1:4395752-4395771 Msa0712560:intron 10.0%
!!! GATTTTAATTATACTATTAT+TGG - chr5_1:4396353-4396372 Msa0712560:intron 10.0%
!! AAATTAAAAACTAAAATTCT+GGG + chr5_1:4396785-4396804 None:intergenic 10.0%
!! AAAATTAAAAACTAAAATTC+TGG + chr5_1:4396786-4396805 None:intergenic 10.0%
!!! TTAATTTTTTGAGTTTTATT+TGG - chr5_1:4396798-4396817 Msa0712560:CDS 10.0%
!!! TAATTTTTTGAGTTTTATTT+GGG - chr5_1:4396799-4396818 Msa0712560:CDS 10.0%
!! AATATAAAAACTAAAATTCT+GGG + chr5_1:4396976-4396995 None:intergenic 10.0%
!! AAATATAAAAACTAAAATTC+TGG + chr5_1:4396977-4396996 None:intergenic 10.0%
!!! GAATTTTAGTTTTTATATTT+CGG - chr5_1:4396977-4396996 Msa0712560:five_prime_UTR 10.0%
!!! TGAATTTGTTTTATATTTGT+AGG - chr5_1:4393172-4393191 Msa0712560:three_prime_UTR 15.0%
!!! ACTTTTGATTAAAAGTTTTT+TGG + chr5_1:4394480-4394499 None:intergenic 15.0%
!!! CTTTTAATCAAAAGTTTTTA+AGG - chr5_1:4394485-4394504 Msa0712560:intron 15.0%
!! AGTGATATACATATAAAATA+AGG + chr5_1:4394896-4394915 None:intergenic 15.0%
!! TAATTGTTGAATGAATAAAT+AGG - chr5_1:4395563-4395582 Msa0712560:intron 15.0%
!! AAAAAATTATGTATGCAAAT+TGG - chr5_1:4395896-4395915 Msa0712560:intron 15.0%
!!! TTATTGTCATTTTATGAATA+CGG - chr5_1:4395926-4395945 Msa0712560:intron 15.0%
!!! TATTCATGTATTCAAAATTT+TGG + chr5_1:4396121-4396140 None:intergenic 15.0%
!!! AAAATTTTGAAGTATGGTAT+TGG + chr5_1:4392819-4392838 None:intergenic 20.0%
!!! ACTGTATTTAATTTGTGAAA+AGG - chr5_1:4393875-4393894 Msa0712560:intron 20.0%
!! AAAAATTATCTAGTCATCAA+AGG + chr5_1:4393912-4393931 None:intergenic 20.0%
!!! TTTTTCTTTTGCAAATATTG+TGG - chr5_1:4393970-4393989 Msa0712560:intron 20.0%
!!! AATATTGTGGTTTAGATTTT+CGG - chr5_1:4393983-4394002 Msa0712560:intron 20.0%
!! TGAAAAAAATAAGAAACATC+AGG + chr5_1:4394056-4394075 None:intergenic 20.0%
!!! ATGTTTCTTATTTTTTTCAG+AGG - chr5_1:4394057-4394076 Msa0712560:intron 20.0%
!!! TAAAATTCAAACCTGTATTT+TGG + chr5_1:4394220-4394239 None:intergenic 20.0%
!!! CTTCATTCATTTAATTTTGT+TGG - chr5_1:4394269-4394288 Msa0712560:intron 20.0%
!! TTAAATAAAAAACATGCAAG+CGG + chr5_1:4394381-4394400 None:intergenic 20.0%
!! ATATAAAATAAGGAGAACAA+TGG + chr5_1:4394886-4394905 None:intergenic 20.0%
!! ATTTATATTACTGTTTGCTT+TGG - chr5_1:4395111-4395130 Msa0712560:intron 20.0%
!!! TATTATCTGTTTTGTTCATA+AGG + chr5_1:4395188-4395207 None:intergenic 20.0%
!!! TTTTATTTATTTAGGGGTTT+TGG - chr5_1:4395758-4395777 Msa0712560:intron 20.0%
!!! CTTAAGTTTAGTTATGATTT+TGG - chr5_1:4395790-4395809 Msa0712560:intron 20.0%
!!! TATTGTCATTTTATGAATAC+GGG - chr5_1:4395927-4395946 Msa0712560:intron 20.0%
!!! TGGATTAATTTTAAAACTGT+AGG - chr5_1:4396005-4396024 Msa0712560:intron 20.0%
!! AGATGAAATTAACATACAAT+TGG + chr5_1:4396145-4396164 None:intergenic 20.0%
!! CAATGTCAATTATTAAAACA+AGG + chr5_1:4396188-4396207 None:intergenic 20.0%
!!! TGTTTTAATAATTGACATTG+TGG - chr5_1:4396188-4396207 Msa0712560:intron 20.0%
!!! TGTATGATATGTTATTTTTC+TGG - chr5_1:4396670-4396689 Msa0712560:intron 20.0%
!!! GTATGATATGTTATTTTTCT+GGG - chr5_1:4396671-4396690 Msa0712560:intron 20.0%
!!! TGTATGTTGATTTTAGTTAT+CGG - chr5_1:4396743-4396762 Msa0712560:intron 20.0%
!!! GAGTTGAAAATTTTGAAGTA+TGG + chr5_1:4392825-4392844 None:intergenic 25.0%
!!! GATAAGCTTTAGACAAATTA+GGG + chr5_1:4393072-4393091 None:intergenic 25.0%
!!! AGATAAGCTTTAGACAAATT+AGG + chr5_1:4393073-4393092 None:intergenic 25.0%
!!! TATGTTTTTAGGGTTGTTTT+TGG - chr5_1:4393135-4393154 Msa0712560:three_prime_UTR 25.0%
!!! ATGTTTTTAGGGTTGTTTTT+GGG - chr5_1:4393136-4393155 Msa0712560:three_prime_UTR 25.0%
! TTGAATCAAATTAGTGAATC+TGG + chr5_1:4393277-4393296 None:intergenic 25.0%
! ACAAATTGCAGTACTAAATA+TGG + chr5_1:4393559-4393578 None:intergenic 25.0%
!! TGTATTGTGATGTATTTTAC+TGG - chr5_1:4393592-4393611 Msa0712560:CDS 25.0%
! AAAAATTTGCAAGTCATCAA+AGG + chr5_1:4393751-4393770 None:intergenic 25.0%
!! TGACTAGATAATTTTTGTGA+AGG - chr5_1:4393916-4393935 Msa0712560:intron 25.0%
!!! TGTTTTAAGGAAATAGTAAC+TGG + chr5_1:4394541-4394560 None:intergenic 25.0%
! TTCAAAAGAAATAGACAAAC+TGG + chr5_1:4394639-4394658 None:intergenic 25.0%
! TGAATATAGACTGAAATTAC+TGG - chr5_1:4394675-4394694 Msa0712560:intron 25.0%
! TTGTGACAATATTTGCAAAA+GGG - chr5_1:4394772-4394791 Msa0712560:intron 25.0%
! TATATCACTCTTAATATACC+TGG - chr5_1:4394907-4394926 Msa0712560:intron 25.0%
! TGTTAATGTACTTAAGAGTT+AGG + chr5_1:4394946-4394965 None:intergenic 25.0%
!!! TGTTTTGTTCATAAGGAAAA+AGG + chr5_1:4395181-4395200 None:intergenic 25.0%
! ATTCAACAATTACAAAACCA+TGG + chr5_1:4395555-4395574 None:intergenic 25.0%
! TTGCAATGAAGAACATTAAT+GGG + chr5_1:4395614-4395633 None:intergenic 25.0%
! ATTGCAATGAAGAACATTAA+TGG + chr5_1:4395615-4395634 None:intergenic 25.0%
! TCAGAACTACAATAATCTAA+TGG + chr5_1:4395838-4395857 None:intergenic 25.0%
! ATTATGTATGCAAATTGGTT+AGG - chr5_1:4395901-4395920 Msa0712560:intron 25.0%
!!! TTCACTTTTTTACATTGAGA+TGG - chr5_1:4395954-4395973 Msa0712560:intron 25.0%
!!! TTTTTTACATTGAGATGGTA+TGG - chr5_1:4395959-4395978 Msa0712560:intron 25.0%
! TGAAACTAGACAATCTTAAA+TGG - chr5_1:4396072-4396091 Msa0712560:intron 25.0%
!!! GTATGATATGTTACTTTTCT+AGG - chr5_1:4396857-4396876 Msa0712560:CDS 25.0%
!!! TGTATGTTGATTTTAGCTAT+CGG - chr5_1:4396934-4396953 Msa0712560:CDS 25.0%
! AATTTTCAACTCACGAAGAA+AGG - chr5_1:4392833-4392852 Msa0712560:three_prime_UTR 30.0%
! ATTTTCAACTCACGAAGAAA+GGG - chr5_1:4392834-4392853 Msa0712560:three_prime_UTR 30.0%
CAAATTAGGGTTCAATTGAA+TGG + chr5_1:4393059-4393078 None:intergenic 30.0%
TGGTTGAATTTGTGTAATTG+CGG - chr5_1:4393422-4393441 Msa0712560:intron 30.0%
! TTGTGATGTATTTTACTGGT+TGG - chr5_1:4393596-4393615 Msa0712560:CDS 30.0%
! ACTGGAGATAATTTGTGAAA+AGG - chr5_1:4393714-4393733 Msa0712560:intron 30.0%
TTCTGTTAGATGACATGTTT+CGG - chr5_1:4394349-4394368 Msa0712560:intron 30.0%
!! TGTTTTGAGTAAGCTTACTT+TGG - chr5_1:4394452-4394471 Msa0712560:intron 30.0%
!! GTTTTGAGTAAGCTTACTTT+GGG - chr5_1:4394453-4394472 Msa0712560:intron 30.0%
!! TTTTGAGTAAGCTTACTTTG+GGG - chr5_1:4394454-4394473 Msa0712560:intron 30.0%
TTCCTTAAAACAAACATGCT+TGG - chr5_1:4394549-4394568 Msa0712560:CDS 30.0%
AGATCACAAATCAATGGAAT+TGG + chr5_1:4394614-4394633 None:intergenic 30.0%
GTTGTGACAATATTTGCAAA+AGG - chr5_1:4394771-4394790 Msa0712560:intron 30.0%
! TTAGGAAGTTTTCAATATCC+AGG + chr5_1:4394928-4394947 None:intergenic 30.0%
AAGGAAAAAGGTAAGTTACT+TGG + chr5_1:4395169-4395188 None:intergenic 30.0%
AACCAAAATTGAAATTCGTC+TGG - chr5_1:4395237-4395256 Msa0712560:intron 30.0%
CAAAAGCTGAAGCAATTAAT+TGG - chr5_1:4395260-4395279 Msa0712560:intron 30.0%
TTCAGTGTAATCATAACTGT+CGG + chr5_1:4395435-4395454 None:intergenic 30.0%
TAGTGCTTTCAATTACAGAA+TGG - chr5_1:4395520-4395539 Msa0712560:intron 30.0%
!! TATTTATTTAGGGGTTTTGG+AGG - chr5_1:4395761-4395780 Msa0712560:intron 30.0%
!!! ATTTATTTAGGGGTTTTGGA+GGG - chr5_1:4395762-4395781 Msa0712560:intron 30.0%
! AAAATTAATCCACTTGTTGC+TGG + chr5_1:4395997-4396016 None:intergenic 30.0%
TGGTTAAAACAGTACTCAAT+AGG + chr5_1:4396101-4396120 None:intergenic 30.0%
!! CTGCATTTTGGTAAATATCA+CGG + chr5_1:4396276-4396295 None:intergenic 30.0%
TATTTACCAAAATGCAGATG+AGG - chr5_1:4396279-4396298 Msa0712560:intron 30.0%
! ATTGACTAATTTGCATTTGC+TGG - chr5_1:4396697-4396716 Msa0712560:intron 30.0%
! TTGACTAATTTGCATTTGCT+GGG - chr5_1:4396698-4396717 Msa0712560:intron 30.0%
!!! GGAAGTGGATTTTATTTTCT+TGG - chr5_1:4396720-4396739 Msa0712560:intron 30.0%
!!! CACTTTTGAAATACCAAGTA+TGG - chr5_1:4396825-4396844 Msa0712560:CDS 30.0%
ATACAATTGATCACCATACT+TGG + chr5_1:4396841-4396860 None:intergenic 30.0%
! CACTTTGGAAATACTAAGTA+TGG - chr5_1:4397008-4397027 Msa0712560:five_prime_UTR 30.0%
! GTACATTTGGAGTGTATATT+TGG - chr5_1:4397045-4397064 Msa0712560:five_prime_UTR 30.0%
!!! AGGGTTTTGAAGAAGAAGAA+TGG - chr5_1:4392853-4392872 Msa0712560:three_prime_UTR 35.0%
GATATAAGATTGTGCTCGAT+CGG + chr5_1:4392993-4393012 None:intergenic 35.0%
!! AGCTGTTTCTGATGCTAATA+AGG - chr5_1:4393033-4393052 Msa0712560:three_prime_UTR 35.0%
! TCTAAAGCTTATCTTCGCAA+AGG - chr5_1:4393079-4393098 Msa0712560:three_prime_UTR 35.0%
CTAAAGCTTATCTTCGCAAA+GGG - chr5_1:4393080-4393099 Msa0712560:three_prime_UTR 35.0%
TGCTAAGATTGCACTTGAAA+AGG - chr5_1:4393227-4393246 Msa0712560:intron 35.0%
GCTAAGATTGCACTTGAAAA+GGG - chr5_1:4393228-4393247 Msa0712560:intron 35.0%
CTAAGATTGCACTTGAAAAG+GGG - chr5_1:4393229-4393248 Msa0712560:intron 35.0%
TAAGATTGCACTTGAAAAGG+GGG - chr5_1:4393230-4393249 Msa0712560:intron 35.0%
! TTAGTGAATCTGGAATCATC+AGG + chr5_1:4393267-4393286 None:intergenic 35.0%
TGAATTTGTGTAATTGCGGA+AGG - chr5_1:4393426-4393445 Msa0712560:intron 35.0%
! TCACAGTTTCGAGGTTTTTA+GGG - chr5_1:4393512-4393531 Msa0712560:intron 35.0%
TGAATGAGAATGAGTAGTGA+TGG - chr5_1:4393635-4393654 Msa0712560:intron 35.0%
TGCTTACTTGTTTATGCGAT+CGG - chr5_1:4393681-4393700 Msa0712560:intron 35.0%
!! TGTTTATGCGATCGGTTTTT+AGG - chr5_1:4393689-4393708 Msa0712560:intron 35.0%
!! GTTTATGCGATCGGTTTTTA+GGG - chr5_1:4393690-4393709 Msa0712560:intron 35.0%
! AGTCTAATGAGCGAATTTTG+AGG + chr5_1:4393833-4393852 None:intergenic 35.0%
ATGATACCCATATGTGTGAT+AGG - chr5_1:4394143-4394162 Msa0712560:CDS 35.0%
ATCACTCCTATCACACATAT+GGG + chr5_1:4394152-4394171 None:intergenic 35.0%
! TGCATTTGTTTGGGATTCTT+TGG + chr5_1:4394182-4394201 None:intergenic 35.0%
ACTTATGACAGACTGTGAAA+TGG + chr5_1:4394330-4394349 None:intergenic 35.0%
TCTGTTAGATGACATGTTTC+GGG - chr5_1:4394350-4394369 Msa0712560:intron 35.0%
!! AAGTTTTTAAGGGAGACTGA+AGG - chr5_1:4394496-4394515 Msa0712560:intron 35.0%
!! AGTTTTTAAGGGAGACTGAA+GGG - chr5_1:4394497-4394516 Msa0712560:intron 35.0%
!!! AGCCAAGCATGTTTGTTTTA+AGG + chr5_1:4394554-4394573 None:intergenic 35.0%
CTGGAAAGATCACAAATCAA+TGG + chr5_1:4394620-4394639 None:intergenic 35.0%
!! AAATTACTGGCTCAATGTTC+TGG - chr5_1:4394688-4394707 Msa0712560:intron 35.0%
!! TTGATTGATGATGTTTGAGC+AGG - chr5_1:4394718-4394737 Msa0712560:intron 35.0%
GAAAATGTTGTTGTGGACTT+TGG - chr5_1:4394804-4394823 Msa0712560:intron 35.0%
AATTACCAACCTCGATTGTT+TGG - chr5_1:4395011-4395030 Msa0712560:CDS 35.0%
!! TTTGCTTTGGAAACACAAAC+AGG - chr5_1:4395124-4395143 Msa0712560:intron 35.0%
! TGCCAGACGAATTTCAATTT+TGG + chr5_1:4395242-4395261 None:intergenic 35.0%
AGCAATTAATTGGACATCTC+TGG - chr5_1:4395270-4395289 Msa0712560:intron 35.0%
!! TGAAGGCACGATTATCTTTT+GGG + chr5_1:4395317-4395336 None:intergenic 35.0%
TTCAGGTGAGTTCATTACTT+GGG - chr5_1:4395333-4395352 Msa0712560:intron 35.0%
!!! CTTGGGTAGTTTTTAGTTTG+CGG - chr5_1:4395350-4395369 Msa0712560:intron 35.0%
TTTGCGGTATCAATCTATGA+AGG - chr5_1:4395366-4395385 Msa0712560:intron 35.0%
TTGCGGTATCAATCTATGAA+GGG - chr5_1:4395367-4395386 Msa0712560:intron 35.0%
TTTCTGCAGTTCAATCTGAA+AGG - chr5_1:4395640-4395659 Msa0712560:CDS 35.0%
TTAGTCCTTGACTTTGATGA+CGG + chr5_1:4395675-4395694 None:intergenic 35.0%
AAAGTCAAGGACTAAGGATT+GGG - chr5_1:4395680-4395699 Msa0712560:CDS 35.0%
! GGAGCTTTTATGAAATCATG+TGG + chr5_1:4395817-4395836 None:intergenic 35.0%
CTGTAGGACATTGTTAAATG+TGG - chr5_1:4396021-4396040 Msa0712560:intron 35.0%
GAGAGACGAAAGTTGTATTT+AGG - chr5_1:4396049-4396068 Msa0712560:intron 35.0%
! CTTTTCTTCTTTCTCCTGAA+AGG + chr5_1:4396221-4396240 None:intergenic 35.0%
GAGAAAGAAGAAAAGCTTGA+TGG - chr5_1:4396226-4396245 Msa0712560:intron 35.0%
TTCAACTGATTGGAAAGAAG+TGG - chr5_1:4396479-4396498 Msa0712560:intron 35.0%
TCAACTGATTGGAAAGAAGT+GGG - chr5_1:4396480-4396499 Msa0712560:intron 35.0%
AAGCATAAGCAGTATTTGAG+TGG + chr5_1:4396571-4396590 None:intergenic 35.0%
CTCAAATACTGCTTATGCTT+TGG - chr5_1:4396571-4396590 Msa0712560:CDS 35.0%
ACCTAATAACGAGAGTGAAA+TGG + chr5_1:4396633-4396652 None:intergenic 35.0%
! TGACTAATTTGCATTTGCTG+GGG - chr5_1:4396699-4396718 Msa0712560:intron 35.0%
! TGACTAATTTGCATTTGCTG+AGG - chr5_1:4396699-4396718 Msa0712560:intron 35.0%
ATTTCGGTTGTGAAACACTT+TGG - chr5_1:4396993-4397012 Msa0712560:five_prime_UTR 35.0%
GATCAACATGTTCGTACATT+TGG - chr5_1:4397032-4397051 Msa0712560:five_prime_UTR 35.0%
TTGCGACTGAGTAGTGAATT+TGG - chr5_1:4393402-4393421 Msa0712560:intron 40.0%
! GTCACAGTTTCGAGGTTTTT+AGG - chr5_1:4393511-4393530 Msa0712560:intron 40.0%
! GAATGAGTAGTGATGGAACT+AGG - chr5_1:4393642-4393661 Msa0712560:intron 40.0%
! TTTGGGTTCATTTGGTGGTA+GGG + chr5_1:4394104-4394123 None:intergenic 40.0%
! ATTTGGGTTCATTTGGTGGT+AGG + chr5_1:4394105-4394124 None:intergenic 40.0%
! GATGATTTGGGTTCATTTGG+TGG + chr5_1:4394109-4394128 None:intergenic 40.0%
! GCAGATGATTTGGGTTCATT+TGG + chr5_1:4394112-4394131 None:intergenic 40.0%
CATCACTCCTATCACACATA+TGG + chr5_1:4394153-4394172 None:intergenic 40.0%
TGGTGCAACTGCATTTGTTT+GGG + chr5_1:4394191-4394210 None:intergenic 40.0%
!!! AACCTGTATTTTGGTCTGAC+TGG + chr5_1:4394211-4394230 None:intergenic 40.0%
AATAGCAGCAAGAACAGAAC+AGG + chr5_1:4394248-4394267 None:intergenic 40.0%
CATGCTTGGCTACAATTTGT+TGG - chr5_1:4394563-4394582 Msa0712560:CDS 40.0%
!! TTGGCTACAATTTGTTGGTG+TGG - chr5_1:4394568-4394587 Msa0712560:CDS 40.0%
ATTGTCACAACCACTTCTTC+TGG + chr5_1:4394762-4394781 None:intergenic 40.0%
ACCAGCAGAAAATGTTGTTG+TGG - chr5_1:4394797-4394816 Msa0712560:intron 40.0%
! TCCACAACAACATTTTCTGC+TGG + chr5_1:4394801-4394820 None:intergenic 40.0%
GGGGGAAAATCAAATAGCAT+CGG + chr5_1:4394852-4394871 None:intergenic 40.0%
AGTGTTACCATTGATGTTCC+TGG - chr5_1:4394975-4394994 Msa0712560:intron 40.0%
!! GTTGGTAATTGTAGGCATCT+TGG + chr5_1:4395001-4395020 None:intergenic 40.0%
!! CAATCGAGGTTGGTAATTGT+AGG + chr5_1:4395009-4395028 None:intergenic 40.0%
GTTACCTTTCCAAACAATCG+AGG + chr5_1:4395023-4395042 None:intergenic 40.0%
ACCTGATAAGTGCAAAGTTG+TGG - chr5_1:4395207-4395226 Msa0712560:intron 40.0%
ACCACAACTTTGCACTTATC+AGG + chr5_1:4395211-4395230 None:intergenic 40.0%
!! GACATCTCTGGAATATAGCA+AGG - chr5_1:4395282-4395301 Msa0712560:intron 40.0%
!! GAAGGCACGATTATCTTTTG+GGG + chr5_1:4395316-4395335 None:intergenic 40.0%
!! CTGAAGGCACGATTATCTTT+TGG + chr5_1:4395318-4395337 None:intergenic 40.0%
CAAAAGATAATCGTGCCTTC+AGG - chr5_1:4395316-4395335 Msa0712560:intron 40.0%
CAAGTAATGAACTCACCTGA+AGG + chr5_1:4395334-4395353 None:intergenic 40.0%
CTTCAGGTGAGTTCATTACT+TGG - chr5_1:4395332-4395351 Msa0712560:intron 40.0%
TGCGGTATCAATCTATGAAG+GGG - chr5_1:4395368-4395387 Msa0712560:intron 40.0%
ATAACTGTCGGTATCAGACA+CGG + chr5_1:4395423-4395442 None:intergenic 40.0%
!! TGAAAGCACTAACACAGACA+CGG + chr5_1:4395511-4395530 None:intergenic 40.0%
CATATCCGTCATCAAAGTCA+AGG - chr5_1:4395667-4395686 Msa0712560:CDS 40.0%
GTCATCAAAGTCAAGGACTA+AGG - chr5_1:4395674-4395693 Msa0712560:CDS 40.0%
CAAAGTCAAGGACTAAGGAT+TGG - chr5_1:4395679-4395698 Msa0712560:CDS 40.0%
GACTAAGGATTGGGATAAGT+TGG - chr5_1:4395689-4395708 Msa0712560:CDS 40.0%
GGAAGCTGAAGTGAAAAAAG+AGG - chr5_1:4395710-4395729 Msa0712560:CDS 40.0%
! TCATGTCCTCATCTGCATTT+TGG + chr5_1:4396288-4396307 None:intergenic 40.0%
AAAATGCAGATGAGGACATG+AGG - chr5_1:4396287-4396306 Msa0712560:intron 40.0%
GAACAGTGCTTTCAACTGAT+TGG - chr5_1:4396469-4396488 Msa0712560:intron 40.0%
GAAAGAAGTGGGATCAAAGA+AGG - chr5_1:4396491-4396510 Msa0712560:intron 40.0%
GCCATTTCACTCTCGTTATT+AGG - chr5_1:4396629-4396648 Msa0712560:CDS 40.0%
GGCTTGGGAGTAGAAATCAA+CGG + chr5_1:4392936-4392955 None:intergenic 45.0%
GTGACTACAACTGCAATTGC+AGG + chr5_1:4393496-4393515 None:intergenic 45.0%
CAGTTGTAGTCACAGTTTCG+AGG - chr5_1:4393503-4393522 Msa0712560:intron 45.0%
ACAGACGCAGCAGATGATTT+GGG + chr5_1:4394121-4394140 None:intergenic 45.0%
AACAGACGCAGCAGATGATT+TGG + chr5_1:4394122-4394141 None:intergenic 45.0%
CTGGTGCAACTGCATTTGTT+TGG + chr5_1:4394192-4394211 None:intergenic 45.0%
CACCAGTCAGACCAAAATAC+AGG - chr5_1:4394206-4394225 Msa0712560:intron 45.0%
TTACCAGAAGCCAGAAGAAG+TGG - chr5_1:4394749-4394768 Msa0712560:intron 45.0%
AACAATGGAGAGCAGGTAAG+GGG + chr5_1:4394871-4394890 None:intergenic 45.0%
GAACAATGGAGAGCAGGTAA+GGG + chr5_1:4394872-4394891 None:intergenic 45.0%
AGAACAATGGAGAGCAGGTA+AGG + chr5_1:4394873-4394892 None:intergenic 45.0%
TAAGGAGAACAATGGAGAGC+AGG + chr5_1:4394878-4394897 None:intergenic 45.0%
ATCTTGGCCAGGAACATCAA+TGG + chr5_1:4394985-4395004 None:intergenic 45.0%
TAATTGTAGGCATCTTGGCC+AGG + chr5_1:4394996-4395015 None:intergenic 45.0%
CCTTTCCAAACAATCGAGGT+TGG + chr5_1:4395019-4395038 None:intergenic 45.0%
CCAACCTCGATTGTTTGGAA+AGG - chr5_1:4395016-4395035 Msa0712560:CDS 45.0%
ACTAACACAGACACGGACAT+TGG + chr5_1:4395504-4395523 None:intergenic 45.0%
!!! CAGAATGGTTGCTTTTGCCA+TGG - chr5_1:4395535-4395554 Msa0712560:intron 45.0%
!! GACTTTGATGACGGATATGC+AGG + chr5_1:4395666-4395685 None:intergenic 45.0%
GATTCATTGCCAGCAACAAG+TGG - chr5_1:4395985-4396004 Msa0712560:intron 45.0%
ACATTGCAGCTGGAGTCAAA+TGG - chr5_1:4396447-4396466 Msa0712560:intron 45.0%
AGAAGTGGGATCAAAGAAGG+TGG - chr5_1:4396494-4396513 Msa0712560:intron 45.0%
AAGGCATGGAGGTGAAGAAA+TGG - chr5_1:4396532-4396551 Msa0712560:CDS 45.0%
AGGCATGGAGGTGAAGAAAT+GGG - chr5_1:4396533-4396552 Msa0712560:CDS 45.0%
! ATTTGCATTTGCTGGGGAAG+TGG - chr5_1:4396705-4396724 Msa0712560:intron 45.0%
!! AATAAATAAAAACATAAATA+GGG + chr5_1:4395749-4395768 None:intergenic 5.0%
!! AAATAAATAAAAACATAAAT+AGG + chr5_1:4395750-4395769 None:intergenic 5.0%
!!! ATTTATGTTTTTATTTATTT+AGG - chr5_1:4395750-4395769 Msa0712560:CDS 5.0%
!!! TTTATGTTTTTATTTATTTA+GGG - chr5_1:4395751-4395770 Msa0712560:intron 5.0%
!!! TGATTTTTATTTTATTTTAT+TGG - chr5_1:4396911-4396930 Msa0712560:CDS 5.0%
! GGGATCGATTTCGATGGCTT+GGG + chr5_1:4392951-4392970 None:intergenic 50.0%
! TGGGATCGATTTCGATGGCT+TGG + chr5_1:4392952-4392971 None:intergenic 50.0%
! GTTGGTGGGATCGATTTCGA+TGG + chr5_1:4392957-4392976 None:intergenic 50.0%
TGTCAACGCTTCATTGCTGC+TGG - chr5_1:4393300-4393319 Msa0712560:CDS 50.0%
ATCAGGCTCGCATATCATGC+AGG + chr5_1:4394039-4394058 None:intergenic 50.0%
AGGGAGACTGAAGGGAGAAA+AGG - chr5_1:4394505-4394524 Msa0712560:intron 50.0%
GGGAGACTGAAGGGAGAAAA+GGG - chr5_1:4394506-4394525 Msa0712560:intron 50.0%
!! CAACCACTTCTTCTGGCTTC+TGG + chr5_1:4394755-4394774 None:intergenic 50.0%
ACAATGGAGAGCAGGTAAGG+GGG + chr5_1:4394870-4394889 None:intergenic 50.0%
ATCTATGAAGGGGACACTCC+CGG - chr5_1:4395378-4395397 Msa0712560:intron 50.0%
ATTGTGGTGCTCTGCCTTTC+AGG - chr5_1:4396204-4396223 Msa0712560:intron 50.0%
CTGCAATGTCACGCAGTTCA+AGG + chr5_1:4396436-4396455 None:intergenic 50.0%
GTGGGATCAAAGAAGGTGGA+AGG - chr5_1:4396498-4396517 Msa0712560:intron 50.0%
TTCTTCACCTCCATGCCTTC+CGG + chr5_1:4396531-4396550 None:intergenic 50.0%
!! GCGAAGAGATTGGCGTTGGT+GGG + chr5_1:4392971-4392990 None:intergenic 55.0%
ATCGGCGAAGAGATTGGCGT+TGG + chr5_1:4392975-4392994 None:intergenic 55.0%
TGCTCGATCGGCGAAGAGAT+TGG + chr5_1:4392981-4393000 None:intergenic 55.0%
!!! GCGATCGGTTTTTAGGGCAC+TGG - chr5_1:4393696-4393715 Msa0712560:intron 55.0%
! TTGGTGGTAGGGTGCTCGTA+AGG + chr5_1:4394093-4394112 None:intergenic 55.0%
ACACCGGGACACACCTAATC+CGG + chr5_1:4395400-4395419 None:intergenic 55.0%
TCGGTATCAGACACGGACAC+CGG + chr5_1:4395416-4395435 None:intergenic 55.0%
GAACTGCGTGACATTGCAGC+TGG - chr5_1:4396437-4396456 Msa0712560:intron 55.0%
GAAGGTGGAAGGAAGTCCTC+CGG - chr5_1:4396509-4396528 Msa0712560:intron 55.0%
! GGCGAAGAGATTGGCGTTGG+TGG + chr5_1:4392972-4392991 None:intergenic 60.0%
GAAGGGGACACTCCCGGATT+AGG - chr5_1:4395384-4395403 Msa0712560:intron 60.0%
! CTCCCGGATTAGGTGTGTCC+CGG - chr5_1:4395394-4395413 Msa0712560:intron 60.0%
CACCGGGACACACCTAATCC+GGG + chr5_1:4395399-4395418 None:intergenic 60.0%
CGGTATCAGACACGGACACC+GGG + chr5_1:4395415-4395434 None:intergenic 60.0%
GTGGAAGGAAGTCCTCCGGA+AGG - chr5_1:4396513-4396532 Msa0712560:intron 60.0%
AGGAAGTCCTCCGGAAGGCA+TGG - chr5_1:4396518-4396537 Msa0712560:intron 60.0%
! AAGTCCTCCGGAAGGCATGG+AGG - chr5_1:4396521-4396540 Msa0712560:intron 60.0%
TTCACCTCCATGCCTTCCGG+AGG + chr5_1:4396528-4396547 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4392761 4397085 4392761 ID=Msa0712560;Name=Msa0712560
chr5_1 mRNA 4392761 4397085 4392761 ID=Msa0712560-mRNA-1;Parent=Msa0712560;Name=Msa0712560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=111|1|1|1|0.88|0.8|10|479|367
chr5_1 exon 4392761 4393194 4392761 ID=Msa0712560-mRNA-1:exon:1858;Parent=Msa0712560-mRNA-1
chr5_1 exon 4393238 4393390 4393238 ID=Msa0712560-mRNA-1:exon:1857;Parent=Msa0712560-mRNA-1
chr5_1 exon 4393516 4393620 4393516 ID=Msa0712560-mRNA-1:exon:1856;Parent=Msa0712560-mRNA-1
chr5_1 exon 4394115 4394197 4394115 ID=Msa0712560-mRNA-1:exon:1855;Parent=Msa0712560-mRNA-1
chr5_1 exon 4394509 4394644 4394509 ID=Msa0712560-mRNA-1:exon:1854;Parent=Msa0712560-mRNA-1
chr5_1 exon 4394809 4394874 4394809 ID=Msa0712560-mRNA-1:exon:1853;Parent=Msa0712560-mRNA-1
chr5_1 exon 4395010 4395106 4395010 ID=Msa0712560-mRNA-1:exon:1852;Parent=Msa0712560-mRNA-1
chr5_1 exon 4395619 4395769 4395619 ID=Msa0712560-mRNA-1:exon:1851;Parent=Msa0712560-mRNA-1
chr5_1 exon 4396525 4396652 4396525 ID=Msa0712560-mRNA-1:exon:1850;Parent=Msa0712560-mRNA-1
chr5_1 exon 4396745 4397085 4396745 ID=Msa0712560-mRNA-1:exon:1849;Parent=Msa0712560-mRNA-1
chr5_1 five_prime_UTR 4396975 4397085 4396975 ID=Msa0712560-mRNA-1:five_prime_utr;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4396745 4396974 4396745 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4396525 4396652 4396525 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4395619 4395769 4395619 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4395010 4395106 4395010 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4394809 4394874 4394809 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4394509 4394644 4394509 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4394115 4394197 4394115 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4393516 4393620 4393516 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 CDS 4393283 4393390 4393283 ID=Msa0712560-mRNA-1:cds;Parent=Msa0712560-mRNA-1
chr5_1 three_prime_UTR 4393238 4393282 4393238 ID=Msa0712560-mRNA-1:three_prime_utr;Parent=Msa0712560-mRNA-1
chr5_1 three_prime_UTR 4392761 4393194 4392761 ID=Msa0712560-mRNA-1:three_prime_utr;Parent=Msa0712560-mRNA-1
Gene Sequence

>Msa0712560

ATGGCTCAAGAACTCGAGAACAAAGCAAAAGAAGCTTTTTTCGACGACGATTTTTCACTCGCCGTTGATTTCTACTCCCAAGCCATCGAAATCGATCCCACCAACGCCAATCTCTTCGCCGATCGAGCACAATCTTATATCAAACTCAACGCTTTCACTGAAGCTGTTTCTGATGCTAATAAGGCCATTCAATTGAACCCTAATTTGTCTAAAGCTTATCTTCGCAAAGGGACTGCTTGTATTAATCTTGAAGAATATCATACTGCTAAGATTGCACTTGAAAAGGGGGCTTCTTTTGCACCTGATGATTCCAGATTCACTAATTTGATTCAACAATGTCAACGCTTCATTGCTGCTGAGGAATCAGAAAGCCTTACGAGCACCCTACCACCAAATGAACCCAAATCATCTGCTGCGTCTGTTAATGATACCCATATGTGTGATAGGAGTGATGAAACATCCAAAGAATCCCAAACAAATGCAGTTGCACCAGTCAGACCAAAATACAGGCATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGGATACCAGCAGAAAATGTTGTTGTGGACTTTGGTGAACAAATTCTGAGTGTTACCATTGATGTTCCTGGCCAAGATGCCTACAATTACCAACCTCGATTGTTTGGAAAGATAATACCTGATAAGTGCAAAGTTGTGGTTTTGTCAACCAAAATTGAAATTCGTCTGGCAAAAGCTGAAGCAATTAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCCCAAAAGATAATCGTGCCTTCAGTTCAATCTGAAAGGCCTGCATATCCGTCATCAAAGTCAAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCTGGAGTCAAATGGAACAGTGCTTTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCGGAAGGCATGGAGGTGAAGAAATGGGAGTATTGA

Protein sequence

>Msa0712560

MAQELENKAKEAFFDDDFSLAVDFYSQAIEIDPTNANLFADRAQSYIKLNAFTEAVSDANKAIQLNPNLSKAYLRKGTACINLEEYHTAKIALEKGASFAPDDSRFTNLIQQCQRFIAAEESESLTSTLPPNEPKSSAASVNDTHMCDRSDETSKESQTNAVAPVRPKYRHEYYQKPEEVVVTIFAKGIPAENVVVDFGEQILSVTIDVPGQDAYNYQPRLFGKIIPDKCKVVVLSTKIEIRLAKAEAINWTSLEYSKDVLPQKIIVPSVQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY*