Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002770 | sp|D5LXJ0|CIP73_LOTJA | 71.646 | 723 | 156 | 10 | 1 | 706 | 1 | 691 | 0.0 | 940 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002770 | Msa0362060 | -0.804674 | 1.928476e-49 | -8.615850e-47 |
| Msa0002770 | Msa0416320 | -0.812499 | 4.110878e-51 | -8.615850e-47 |
| Msa0002770 | Msa1215810 | 0.966362 | 8.067325e-126 | -8.615850e-47 |
| Msa0002770 | Msa1383480 | -0.812608 | 3.892716e-51 | -8.615850e-47 |
| Msa0002770 | Msa1426510 | 0.955648 | 1.867824e-113 | -8.615850e-47 |
| Msa0002770 | Msa1442220 | 0.809363 | 1.963419e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002770 | MtrunA17_Chr4g0065101 | 89.688 | 737 | 22 | 4 | 1 | 706 | 1 | 714 | 0.0 | 1230 |
| Msa0002770 | MtrunA17_Chr1g0157381 | 33.512 | 561 | 272 | 17 | 19 | 551 | 24 | 511 | 3.18e-63 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002770 | AT5G25270.1 | 38.336 | 673 | 323 | 19 | 1 | 663 | 1 | 591 | 4.97e-99 | 318 |
| Msa0002770 | AT5G42220.2 | 33.333 | 474 | 251 | 13 | 11 | 458 | 13 | 447 | 7.80e-56 | 205 |
| Msa0002770 | AT5G42220.1 | 33.333 | 474 | 251 | 13 | 11 | 458 | 13 | 447 | 7.80e-56 | 205 |
| Msa0002770 | AT5G11080.3 | 52.564 | 78 | 36 | 1 | 22 | 98 | 11 | 88 | 3.78e-16 | 80.9 |
| Msa0002770 | AT5G11080.1 | 52.564 | 78 | 36 | 1 | 22 | 98 | 11 | 88 | 5.51e-16 | 80.5 |
| Msa0002770 | AT5G11080.2 | 41.414 | 99 | 36 | 2 | 22 | 98 | 11 | 109 | 6.13e-12 | 68.6 |
Find 218 sgRNAs with CRISPR-Local
Find 881 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTCAGCTTCAGGGGCTT+GGG | 0.189395 | 1_1:-4975522 | None:intergenic |
| TCACCACTACTTGCAAAATT+TGG | 0.191628 | 1_1:-4972009 | None:intergenic |
| AACATTCAACGTTCCTATTC+AGG | 0.214574 | 1_1:+4971838 | Msa0002770:CDS |
| AAATATACCCTATTTATTTC+AGG | 0.218452 | 1_1:-4971875 | None:intergenic |
| CTATGGCTTGTGCTTGAATT+TGG | 0.218642 | 1_1:-4971779 | None:intergenic |
| GTATCTGTCTATCAGATTCT+TGG | 0.233942 | 1_1:-4975373 | None:intergenic |
| TGCCTTTGCAATGTGGATTC+AGG | 0.236984 | 1_1:-4974756 | None:intergenic |
| ACTTCCGGCGTCAGTTTCTC+TGG | 0.257615 | 1_1:+4973126 | Msa0002770:CDS |
| GCATGATTGGGCAGACTTCC+TGG | 0.260161 | 1_1:-4969649 | None:intergenic |
| GAGTTCCACCTGAAATAAAT+AGG | 0.264479 | 1_1:+4971867 | Msa0002770:CDS |
| CAGGTTCAGCTTCAGGGGCT+TGG | 0.267729 | 1_1:-4975523 | None:intergenic |
| GATAGATTACGGAATACTTT+TGG | 0.275889 | 1_1:+4973103 | Msa0002770:CDS |
| GTGTATCCCCACGCTCTTCT+TGG | 0.276948 | 1_1:-4974443 | None:intergenic |
| GGGATCTGGTTCTTCACGTT+TGG | 0.283504 | 1_1:+4973504 | Msa0002770:CDS |
| GCATCTATTGCTGGAGAATC+TGG | 0.286152 | 1_1:+4974534 | Msa0002770:CDS |
| TACATATTGCTGTACAATAT+TGG | 0.290617 | 1_1:+4977181 | Msa0002770:three_prime_UTR |
| ACGCTCTTCTTGGCTGGCAT+TGG | 0.292527 | 1_1:-4974433 | None:intergenic |
| CGACTTGAGTACTGTGACTA+TGG | 0.296537 | 1_1:-4971796 | None:intergenic |
| CCCAATTCGCTTCTACTTCA+AGG | 0.300702 | 1_1:+4964819 | Msa0002770:five_prime_UTR |
| CGCTCTTCTTGGCTGGCATT+GGG | 0.305234 | 1_1:-4974432 | None:intergenic |
| TTGCTGTACAATATTGGAAT+TGG | 0.315996 | 1_1:+4977187 | Msa0002770:three_prime_UTR |
| CTAACAGCAGGTTCAGCTTC+AGG | 0.317466 | 1_1:-4975530 | None:intergenic |
| CCTTGAAGTAGAAGCGAATT+GGG | 0.322916 | 1_1:-4964819 | None:intergenic |
| TGTTGTAAATATCAATATTC+TGG | 0.326053 | 1_1:+4975328 | Msa0002770:CDS |
| GAACAGATTGCTACTGTAAC+TGG | 0.331567 | 1_1:+4968775 | Msa0002770:CDS |
| ACCTTGAAGTAGAAGCGAAT+TGG | 0.338079 | 1_1:-4964820 | None:intergenic |
| GATGGCTCTTGTCTTGTGTT+TGG | 0.340573 | 1_1:-4975296 | None:intergenic |
| TTGCATCAAACCTGCATGAT+TGG | 0.341528 | 1_1:-4969662 | None:intergenic |
| GGATCTGGTTCTTCACGTTT+GGG | 0.343525 | 1_1:+4973505 | Msa0002770:CDS |
| TCCTAATCATATCATGGTTC+AGG | 0.344402 | 1_1:+4974105 | Msa0002770:CDS |
| TGCAGCAGTACCTGGTCCCT+TGG | 0.347139 | 1_1:+4974587 | Msa0002770:CDS |
| CCGGTCATATCTCAACAAAT+AGG | 0.355024 | 1_1:+4975596 | Msa0002770:CDS |
| TTTCAAGCTGGAGCAAGCTT+TGG | 0.360970 | 1_1:+4974210 | Msa0002770:CDS |
| CCGAAGTTCTTCCAAGGCCT+TGG | 0.364532 | 1_1:-4973015 | None:intergenic |
| TGCGATCAACCACTCAATCT+AGG | 0.370044 | 1_1:+4973857 | Msa0002770:CDS |
| TTGCTGGAGAATCTGGAATA+AGG | 0.374237 | 1_1:+4974541 | Msa0002770:CDS |
| TACTCTCAAAGTGGATAAAC+AGG | 0.377859 | 1_1:+4967133 | Msa0002770:CDS |
| AGACATAGTGGTTCTGAATC+AGG | 0.384452 | 1_1:+4976072 | Msa0002770:CDS |
| GGTCATAAGAATCAGACTTC+AGG | 0.386653 | 1_1:+4977077 | Msa0002770:three_prime_UTR |
| TACAACCATGACATTGCGTT+TGG | 0.388304 | 1_1:+4973939 | Msa0002770:CDS |
| AAGAAACAGGGTAGAGTGTA+TGG | 0.395585 | 1_1:-4964693 | None:intergenic |
| CTTCCGGCGTCAGTTTCTCT+GGG | 0.397182 | 1_1:+4973127 | Msa0002770:CDS |
| TACTATGAGCCTCAGCTGCT+TGG | 0.398831 | 1_1:-4973471 | None:intergenic |
| CAGTCTGAAGCTGTAGTTAA+TGG | 0.401358 | 1_1:+4974052 | Msa0002770:intron |
| AGTCGTGAATTTGATACAAT+TGG | 0.403251 | 1_1:+4973334 | Msa0002770:CDS |
| TTTACAACACGAGAATTAGA+TGG | 0.404121 | 1_1:-4975314 | None:intergenic |
| CGTCCGGATGCATCTATTGC+TGG | 0.406144 | 1_1:+4974525 | Msa0002770:CDS |
| GTGGTGAAGGGAATGTTGTC+AGG | 0.408467 | 1_1:+4972025 | Msa0002770:CDS |
| GCACAGACTGACTCAAGTTT+AGG | 0.410476 | 1_1:+4974252 | Msa0002770:CDS |
| TGCATCAAACCTGCATGATT+GGG | 0.410770 | 1_1:-4969661 | None:intergenic |
| TTGTAGTGTATTGTGTGGTC+TGG | 0.411552 | 1_1:+4967006 | Msa0002770:intron |
| GAATGATTATGTATAAAATT+CGG | 0.411845 | 1_1:+4977040 | Msa0002770:exon |
| GGAACTCCATCGCCCTGAAT+AGG | 0.417360 | 1_1:-4971851 | None:intergenic |
| CTTCCTGGAGGTGGTAGATC+AGG | 0.417988 | 1_1:-4969634 | None:intergenic |
| CGGTCATATCTCAACAAATA+GGG | 0.421449 | 1_1:+4975597 | Msa0002770:CDS |
| TTCTTGGCTGGCATTGGGTG+TGG | 0.423169 | 1_1:-4974427 | None:intergenic |
| TCAGTCTGTGCAGCTCCTAC+AGG | 0.423837 | 1_1:-4974240 | None:intergenic |
| AGGGCAGGCAAATAGTGAAC+AGG | 0.424813 | 1_1:+4974689 | Msa0002770:intron |
| TGACTAGCAGAACTTTCAAC+TGG | 0.426756 | 1_1:-4974489 | None:intergenic |
| GACTCATATGACTTAGGTAC+TGG | 0.430640 | 1_1:-4973315 | None:intergenic |
| GGTTCAGCTTCAGGGGCTTG+GGG | 0.431903 | 1_1:-4975521 | None:intergenic |
| ATCCCCACGCTCTTCTTGGC+TGG | 0.442443 | 1_1:-4974439 | None:intergenic |
| GAGCATGATTCCCAAGGCCT+TGG | 0.443263 | 1_1:+4973004 | Msa0002770:CDS |
| CGAAGTTCTTCCAAGGCCTT+GGG | 0.443435 | 1_1:-4973014 | None:intergenic |
| AAGGGTTAGGGATTGAATAG+TGG | 0.445904 | 1_1:-4964791 | None:intergenic |
| CGTCCCCTACTTGATCAAAC+TGG | 0.449051 | 1_1:+4973064 | Msa0002770:CDS |
| ACCTGAACCATGATATGATT+AGG | 0.449353 | 1_1:-4974106 | None:intergenic |
| TGTTCTTTCAAAGCAGGGAC+TGG | 0.450476 | 1_1:-4968757 | None:intergenic |
| ACTATGAGCCTCAGCTGCTT+GGG | 0.454818 | 1_1:-4973470 | None:intergenic |
| ATCTGTATATCGATACGCCT+TGG | 0.455517 | 1_1:-4974300 | None:intergenic |
| TCTTCCATCACCCGCATCCT+TGG | 0.457037 | 1_1:+4973543 | Msa0002770:CDS |
| GCTGCAACCATGGTTCTAAT+CGG | 0.458329 | 1_1:-4974570 | None:intergenic |
| ACAACCATGACATTGCGTTT+GGG | 0.460634 | 1_1:+4973940 | Msa0002770:CDS |
| GAATGGATCTGATGCTCCAC+TGG | 0.462859 | 1_1:-4973041 | None:intergenic |
| GCAATCTGTTCTTTCAAAGC+AGG | 0.463654 | 1_1:-4968763 | None:intergenic |
| TTTGAGCTTTATCTCAATAG+TGG | 0.465150 | 1_1:-4967090 | None:intergenic |
| TTGCCAAGGGAAAGTTCTAA+AGG | 0.470571 | 1_1:+4968825 | Msa0002770:CDS |
| TAACAGCAGGTTCAGCTTCA+GGG | 0.470691 | 1_1:-4975529 | None:intergenic |
| CAATGCATGCTGCAACATCA+AGG | 0.471454 | 1_1:+4975492 | Msa0002770:CDS |
| CACAGTACTCAAGTCGCTCC+AGG | 0.472501 | 1_1:+4971803 | Msa0002770:CDS |
| GCAGCAGTACCTGGTCCCTT+GGG | 0.475180 | 1_1:+4974588 | Msa0002770:CDS |
| CTTCCAGTGCTGTTATTGCT+AGG | 0.475329 | 1_1:-4967059 | None:intergenic |
| AGTAATGAAGCAATGGGATC+TGG | 0.476060 | 1_1:+4973490 | Msa0002770:CDS |
| TCTGTATATCGATACGCCTT+GGG | 0.477521 | 1_1:-4974299 | None:intergenic |
| AGTTCCACCTGAAATAAATA+GGG | 0.478302 | 1_1:+4971868 | Msa0002770:CDS |
| ATCAATATTCTGGCAGCTGG+TGG | 0.478719 | 1_1:+4975338 | Msa0002770:CDS |
| AACGTTCCTATTCAGGGCGA+TGG | 0.482883 | 1_1:+4971845 | Msa0002770:CDS |
| CAATCTAGGGCATTGAGGAC+TGG | 0.486555 | 1_1:+4973871 | Msa0002770:CDS |
| AAGCTTGCTCCAGCTTGAAA+AGG | 0.487152 | 1_1:-4974207 | None:intergenic |
| TGAACCAGTTTGATCAAGTA+GGG | 0.490565 | 1_1:-4973068 | None:intergenic |
| CCAAGGCCTTGGAAGAACTT+CGG | 0.491774 | 1_1:+4973015 | Msa0002770:CDS |
| AATTCGGCCTTTGAAAATTG+TGG | 0.492291 | 1_1:+4977056 | Msa0002770:three_prime_UTR |
| GTCATAAGAATCAGACTTCA+GGG | 0.494901 | 1_1:+4977078 | Msa0002770:three_prime_UTR |
| TATTGTGTGGTCTGGAGAAT+GGG | 0.496479 | 1_1:+4967014 | Msa0002770:exon |
| ACATTCAACGTTCCTATTCA+GGG | 0.496989 | 1_1:+4971839 | Msa0002770:CDS |
| CGTGCTTCTTCAGAACCATC+TGG | 0.498068 | 1_1:+4974612 | Msa0002770:CDS |
| ATGTAGGTTGAAACTAATGC+TGG | 0.498291 | 1_1:+4976039 | Msa0002770:intron |
| AGCTTGTTATTTGAGAATGA+TGG | 0.499650 | 1_1:+4973411 | Msa0002770:CDS |
| AAGACTTCTGCCAAGGATGC+GGG | 0.502779 | 1_1:-4973553 | None:intergenic |
| TCAAGCAACCTCTAGGCGTC+CGG | 0.504573 | 1_1:+4974509 | Msa0002770:CDS |
| CATCCTTTAGAACTTTCCCT+TGG | 0.506283 | 1_1:-4968828 | None:intergenic |
| CAAATGATCATCGAACAAGC+TGG | 0.507973 | 1_1:+4973589 | Msa0002770:CDS |
| TCTGCCAAGGATGCGGGTGA+TGG | 0.508021 | 1_1:-4973547 | None:intergenic |
| ACCAGGTACTGCTGCAACCA+TGG | 0.510558 | 1_1:-4974580 | None:intergenic |
| ATCCCTAGCAATAACAGCAC+TGG | 0.511203 | 1_1:+4967056 | Msa0002770:CDS |
| ACCATGGTTGCAGCAGTACC+TGG | 0.511482 | 1_1:+4974579 | Msa0002770:CDS |
| CAAGACTTCTGCCAAGGATG+CGG | 0.512149 | 1_1:-4973554 | None:intergenic |
| TACTGGTCCTAATCATATCA+TGG | 0.514762 | 1_1:+4974099 | Msa0002770:CDS |
| AATATCAATATTCTGGCAGC+TGG | 0.514856 | 1_1:+4975335 | Msa0002770:CDS |
| ATTAGAAGTTAGAATTGAGA+TGG | 0.515282 | 1_1:+4977272 | Msa0002770:three_prime_UTR |
| TCCAGATCCAAAACGCCAAA+AGG | 0.518937 | 1_1:+4976098 | Msa0002770:CDS |
| GGCTCATAGTAATGAAGCAA+TGG | 0.522818 | 1_1:+4973483 | Msa0002770:CDS |
| TATTTCCCACGCTTCGCTAC+CGG | 0.523950 | 1_1:-4964640 | None:intergenic |
| TCAAGTTTAGGTAGTGGACT+TGG | 0.524401 | 1_1:+4974264 | Msa0002770:CDS |
| AGATGGTCACACATTGCATC+TGG | 0.525681 | 1_1:+4969600 | Msa0002770:CDS |
| TTCCAGTGCTGTTATTGCTA+GGG | 0.526167 | 1_1:-4967058 | None:intergenic |
| AGAGTGTATCAGATAGATTA+CGG | 0.527320 | 1_1:+4973092 | Msa0002770:CDS |
| TATACCCTATTTATTTCAGG+TGG | 0.531188 | 1_1:-4971872 | None:intergenic |
| GCGATCAACCACTCAATCTA+GGG | 0.536771 | 1_1:+4973858 | Msa0002770:CDS |
| CTGCTAGTCAAGCAACCTCT+AGG | 0.538894 | 1_1:+4974502 | Msa0002770:CDS |
| AAATGATCATCGAACAAGCT+GGG | 0.539445 | 1_1:+4973590 | Msa0002770:CDS |
| CCACTCAATCTAGGGCATTG+AGG | 0.539741 | 1_1:+4973866 | Msa0002770:CDS |
| GCTCATAGTAATGAAGCAAT+GGG | 0.540566 | 1_1:+4973484 | Msa0002770:CDS |
| TGGCATCATATAAATTACAT+TGG | 0.540649 | 1_1:+4977292 | Msa0002770:three_prime_UTR |
| CGTGCTTTGCCTTTGCAATG+TGG | 0.541533 | 1_1:-4974763 | None:intergenic |
| GTGGAGGATTCAAGCTTACA+AGG | 0.541912 | 1_1:+4975449 | Msa0002770:CDS |
| GTATTGTGTGGTCTGGAGAA+TGG | 0.542973 | 1_1:+4967013 | Msa0002770:exon |
| GGGATTGAATAGTGGAGAGT+GGG | 0.543705 | 1_1:-4964783 | None:intergenic |
| ATGCCAGCCAAGAAGAGCGT+GGG | 0.546687 | 1_1:+4974436 | Msa0002770:CDS |
| AGGGATTGAATAGTGGAGAG+TGG | 0.546959 | 1_1:-4964784 | None:intergenic |
| TCAAATAACAAGCTTGCAGA+AGG | 0.547715 | 1_1:-4973402 | None:intergenic |
| GTGAACCAGTTTGATCAAGT+AGG | 0.547727 | 1_1:-4973069 | None:intergenic |
| AGATTGAGTGGTTGATCGCA+AGG | 0.548030 | 1_1:-4973854 | None:intergenic |
| CAGCAGCGCTTAATTTGCCA+AGG | 0.554164 | 1_1:+4968811 | Msa0002770:CDS |
| TCTCCAGCAATAGATGCATC+CGG | 0.554311 | 1_1:-4974528 | None:intergenic |
| GCTCCAGCTTGAAAAGGAAG+AGG | 0.556671 | 1_1:-4974201 | None:intergenic |
| TCAATATTCTGGCAGCTGGT+GGG | 0.561013 | 1_1:+4975339 | Msa0002770:CDS |
| GGGGAATGCCCAAGCAGCTG+AGG | 0.561312 | 1_1:+4973462 | Msa0002770:CDS |
| GGAAGTCTGCCCAATCATGC+AGG | 0.562465 | 1_1:+4969652 | Msa0002770:CDS |
| AATGCATGCTGCAACATCAA+GGG | 0.563664 | 1_1:+4975493 | Msa0002770:CDS |
| TGATCAAGTAGGGGACGGAA+TGG | 0.565104 | 1_1:-4973058 | None:intergenic |
| TCGCTACCGGCTCAATGAGT+CGG | 0.565356 | 1_1:-4964627 | None:intergenic |
| CAATCTGTTCTTTCAAAGCA+GGG | 0.571681 | 1_1:-4968762 | None:intergenic |
| CTTGAAGTAGAAGCGAATTG+GGG | 0.573060 | 1_1:-4964818 | None:intergenic |
| TACAGCAATATGTATACACT+TGG | 0.573863 | 1_1:-4977172 | None:intergenic |
| ACTGACTCAAGTTTAGGTAG+TGG | 0.575634 | 1_1:+4974258 | Msa0002770:CDS |
| TCTTGTGTTTGGAGTTGATG+AGG | 0.577749 | 1_1:-4975285 | None:intergenic |
| TTCTGAAGAAGCACGACCCA+AGG | 0.578001 | 1_1:-4974604 | None:intergenic |
| CTGAGTCTCGTAAAAGCGCA+CGG | 0.578124 | 1_1:-4964732 | None:intergenic |
| ACGGAAGACTCTGCAAGGAA+TGG | 0.578919 | 1_1:+4974783 | Msa0002770:CDS |
| ATGATATGATTAGGACCAGT+AGG | 0.579197 | 1_1:-4974097 | None:intergenic |
| AACAGCAGGTTCAGCTTCAG+GGG | 0.580718 | 1_1:-4975528 | None:intergenic |
| AGCTTTGGTGCTGTCCCTGT+AGG | 0.581153 | 1_1:+4974225 | Msa0002770:CDS |
| CCTATTTGTTGAGATATGAC+CGG | 0.584034 | 1_1:-4975596 | None:intergenic |
| ATTCACGACTCATATGACTT+AGG | 0.585176 | 1_1:-4973321 | None:intergenic |
| CACATTGCAAAGGCAAAGCA+CGG | 0.586185 | 1_1:+4974764 | Msa0002770:CDS |
| CAGTCTGTGCAGCTCCTACA+GGG | 0.586356 | 1_1:-4974239 | None:intergenic |
| ACAAACTTATACTCTCAAAG+TGG | 0.586665 | 1_1:+4967124 | Msa0002770:CDS |
| CACTGGAGAAATACATGTGG+AGG | 0.586666 | 1_1:+4975433 | Msa0002770:intron |
| GATTGAGTGGTTGATCGCAA+GGG | 0.587750 | 1_1:-4973853 | None:intergenic |
| GAAGCACGACCCAAGGGACC+AGG | 0.587781 | 1_1:-4974597 | None:intergenic |
| TTGGGCAGACTTCCTGGAGG+TGG | 0.588696 | 1_1:-4969643 | None:intergenic |
| GAACCTGCTGTTAGTGCTGA+AGG | 0.590701 | 1_1:+4975539 | Msa0002770:CDS |
| GACAAAGTTGTCAAAGAACC+AGG | 0.591819 | 1_1:-4973292 | None:intergenic |
| GGGACATCGCGCAGACATAG+TGG | 0.592620 | 1_1:+4976060 | Msa0002770:CDS |
| ATATGACCGGCATGATCTCA+CGG | 0.595492 | 1_1:-4975583 | None:intergenic |
| ATTGAGCCGGTAGCGAAGCG+TGG | 0.595768 | 1_1:+4964634 | Msa0002770:five_prime_UTR |
| AATGTTTCAATGAATACACC+TGG | 0.600607 | 1_1:-4971821 | None:intergenic |
| ACACAAGTAGATGTTGAAGA+TGG | 0.601424 | 1_1:+4969583 | Msa0002770:intron |
| TGGAATCCGAAGTTCTTCCA+AGG | 0.602911 | 1_1:-4973021 | None:intergenic |
| TTGAGCCGGTAGCGAAGCGT+GGG | 0.604023 | 1_1:+4964635 | Msa0002770:five_prime_UTR |
| ACTCCTTCAGCACTAACAGC+AGG | 0.604034 | 1_1:-4975542 | None:intergenic |
| TGGTGAAGGGAATGTTGTCA+GGG | 0.605189 | 1_1:+4972026 | Msa0002770:CDS |
| CAACCTGATCTACCACCTCC+AGG | 0.605336 | 1_1:+4969631 | Msa0002770:CDS |
| TTACTTGCAGTCAGAGAAGG+GGG | 0.606399 | 1_1:+4973442 | Msa0002770:CDS |
| CCTCAATGCCCTAGATTGAG+TGG | 0.609007 | 1_1:-4973866 | None:intergenic |
| GGAAGAACTTCGGATTCCAG+TGG | 0.611373 | 1_1:+4973025 | Msa0002770:CDS |
| TTTACTTGCAGTCAGAGAAG+GGG | 0.611476 | 1_1:+4973441 | Msa0002770:CDS |
| TGTAGGTTGAAACTAATGCT+GGG | 0.614804 | 1_1:+4976040 | Msa0002770:intron |
| CGAAGACCGACTCATTGAGC+CGG | 0.615519 | 1_1:+4964621 | Msa0002770:five_prime_UTR |
| ATTGCGTTTGGGTCAAACAC+CGG | 0.617351 | 1_1:+4973951 | Msa0002770:CDS |
| ACACATTGCATCTGGTTGTG+AGG | 0.620498 | 1_1:+4969608 | Msa0002770:CDS |
| TCTGAAGCTGTAGTTAATGG+TGG | 0.620579 | 1_1:+4974055 | Msa0002770:CDS |
| GATAGTGCCGATTAGAACCA+TGG | 0.621547 | 1_1:+4974563 | Msa0002770:CDS |
| AATGCCAGCCAAGAAGAGCG+TGG | 0.622070 | 1_1:+4974435 | Msa0002770:CDS |
| ATTGAGTGGTTGATCGCAAG+GGG | 0.622548 | 1_1:-4973852 | None:intergenic |
| TGAGTTTGTATCTAGAGTCG+CGG | 0.624491 | 1_1:-4964665 | None:intergenic |
| CAGTTTGATCAAGTAGGGGA+CGG | 0.624652 | 1_1:-4973063 | None:intergenic |
| AGATGCATCCGGACGCCTAG+AGG | 0.624898 | 1_1:-4974517 | None:intergenic |
| CTCCTGAATCCACATTGCAA+AGG | 0.625624 | 1_1:+4974754 | Msa0002770:CDS |
| ATGAAGGAGCATGATTCCCA+AGG | 0.626007 | 1_1:+4972998 | Msa0002770:intron |
| AAAGCACGGAAGACTCTGCA+AGG | 0.628187 | 1_1:+4974778 | Msa0002770:CDS |
| TTGACCCAAACGCAATGTCA+TGG | 0.628505 | 1_1:-4973944 | None:intergenic |
| TGAGTCTCGTAAAAGCGCAC+GGG | 0.631114 | 1_1:-4964731 | None:intergenic |
| TGTACTCCGTGAGATCATGC+CGG | 0.632422 | 1_1:+4975577 | Msa0002770:CDS |
| GGCTCAAGATTCATCAACCC+AGG | 0.632427 | 1_1:+4975649 | Msa0002770:CDS |
| AAATTCTTCTGATGATCATG+CGG | 0.635928 | 1_1:+4975628 | Msa0002770:CDS |
| TGATGTTGCAGCATGCATTG+AGG | 0.640694 | 1_1:-4975489 | None:intergenic |
| ATGCATGCTGCAACATCAAG+GGG | 0.641170 | 1_1:+4975494 | Msa0002770:CDS |
| AATGATCATCGAACAAGCTG+GGG | 0.648848 | 1_1:+4973591 | Msa0002770:CDS |
| AGAAAGCAAGACTTCTGCCA+AGG | 0.651398 | 1_1:-4973560 | None:intergenic |
| TCTGAAGAAGCACGACCCAA+GGG | 0.651864 | 1_1:-4974603 | None:intergenic |
| GGGCAGGCAAATAGTGAACA+GGG | 0.653751 | 1_1:+4974690 | Msa0002770:intron |
| ACTCATATGACTTAGGTACT+GGG | 0.654035 | 1_1:-4973314 | None:intergenic |
| AGCAGCGCTTAATTTGCCAA+GGG | 0.655567 | 1_1:+4968812 | Msa0002770:CDS |
| TGCCAGCCAAGAAGAGCGTG+GGG | 0.658703 | 1_1:+4974437 | Msa0002770:CDS |
| TGTTGCAGCATGCATTGAGG+TGG | 0.659497 | 1_1:-4975486 | None:intergenic |
| TTCCGGCGTCAGTTTCTCTG+GGG | 0.663260 | 1_1:+4973128 | Msa0002770:CDS |
| TTGAAGTAGAAGCGAATTGG+GGG | 0.684086 | 1_1:-4964817 | None:intergenic |
| GACCCCAGAGAAACTGACGC+CGG | 0.688330 | 1_1:-4973130 | None:intergenic |
| TACTTGCAGTCAGAGAAGGG+GGG | 0.692681 | 1_1:+4973443 | Msa0002770:CDS |
| TCCCACTGGAGAAATACATG+TGG | 0.695949 | 1_1:+4975430 | Msa0002770:intron |
| GTGGATTCAGGAGCTGAATG+TGG | 0.704038 | 1_1:-4974744 | None:intergenic |
| GAACCAGTTTGATCAAGTAG+GGG | 0.707025 | 1_1:-4973067 | None:intergenic |
| ATCGATATACAGATAAGACG+AGG | 0.726970 | 1_1:+4974309 | Msa0002770:CDS |
| TTGAGTGGTTGATCGCAAGG+GGG | 0.754069 | 1_1:-4973851 | None:intergenic |
| TGATTGGGCAGACTTCCTGG+AGG | 0.764411 | 1_1:-4969646 | None:intergenic |
| ATAAGAATCAGACTTCAGGG+TGG | 0.820316 | 1_1:+4977081 | Msa0002770:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTGATTTATTATT+TGG | + | chr1_1:4965319-4965338 | Msa0002770:intron | 10.0% |
| !!! | ATTACTATTATTTTATTTAG+TGG | + | chr1_1:4966898-4966917 | Msa0002770:intron | 10.0% |
| !!! | AAAATATTTATGCTTTTTTA+TGG | - | chr1_1:4968027-4968046 | None:intergenic | 10.0% |
| !!! | AAATATTTTATTTAACGATA+TGG | - | chr1_1:4968969-4968988 | None:intergenic | 10.0% |
| !! | AGAACATATTATTATATTAA+TGG | + | chr1_1:4969979-4969998 | Msa0002770:intron | 10.0% |
| !!! | TTTTTTTTAATTGTAAAACT+GGG | - | chr1_1:4970241-4970260 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTAATTGTAAAAC+TGG | - | chr1_1:4970242-4970261 | None:intergenic | 10.0% |
| !! | AAAAATAAAAGGTAAAAAAT+AGG | - | chr1_1:4970798-4970817 | None:intergenic | 10.0% |
| !! | ACAATTAAAAAAAATATGAA+AGG | - | chr1_1:4972061-4972080 | None:intergenic | 10.0% |
| !! | ACAATTAATTCATTTATATA+TGG | + | chr1_1:4973255-4973274 | Msa0002770:intron | 10.0% |
| !! | TTAATAACAGTTATTAAAAA+GGG | - | chr1_1:4976933-4976952 | None:intergenic | 10.0% |
| !! | ATTAATAACAGTTATTAAAA+AGG | - | chr1_1:4976934-4976953 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTTTGAATTTGG+TGG | + | chr1_1:4965213-4965232 | Msa0002770:intron | 15.0% |
| !!! | TTTTGATTTATTATTTGGAT+TGG | + | chr1_1:4965324-4965343 | Msa0002770:intron | 15.0% |
| !! | AATGAATTGTTATATTCTAA+TGG | - | chr1_1:4967995-4968014 | None:intergenic | 15.0% |
| !!! | TTGTTGATTTTTTCTTTTTT+TGG | + | chr1_1:4969052-4969071 | Msa0002770:intron | 15.0% |
| !! | AATAATAGTAGAATTTCAAT+TGG | + | chr1_1:4969251-4969270 | Msa0002770:intron | 15.0% |
| !! | ATAATAGTAGAATTTCAATT+GGG | + | chr1_1:4969252-4969271 | Msa0002770:intron | 15.0% |
| !!! | TTTCTTTTTATGTAAATAGT+TGG | + | chr1_1:4969788-4969807 | Msa0002770:intron | 15.0% |
| !! | AAAAATGTTTACTGTATTTA+TGG | - | chr1_1:4970860-4970879 | None:intergenic | 15.0% |
| !!! | TAGGTTTTTTCTAAAATAAA+AGG | - | chr1_1:4970890-4970909 | None:intergenic | 15.0% |
| !!! | TTTATTTTAGAAAAAACCTA+TGG | + | chr1_1:4970890-4970909 | Msa0002770:intron | 15.0% |
| !!! | ATTTTCCTTTATATTAATAC+TGG | + | chr1_1:4971184-4971203 | Msa0002770:intron | 15.0% |
| !! | TATATCCAGTATTAATATAA+AGG | - | chr1_1:4971192-4971211 | None:intergenic | 15.0% |
| !!! | AAATAGGGTATATTTTAAAT+TGG | + | chr1_1:4971883-4971902 | Msa0002770:intron | 15.0% |
| !!! | TTTTAATTGTAAATTGTGAT+AGG | + | chr1_1:4972071-4972090 | Msa0002770:intron | 15.0% |
| !!! | TCTCTTTATTTTAAAACTTA+AGG | - | chr1_1:4972149-4972168 | None:intergenic | 15.0% |
| !!! | ACACTTTTATGTTTTATAAA+AGG | - | chr1_1:4972864-4972883 | None:intergenic | 15.0% |
| !! | AAATCTTTAATATTACATCT+TGG | + | chr1_1:4972961-4972980 | Msa0002770:intron | 15.0% |
| !!! | TTTATAATTTTACTAAACTG+CGG | + | chr1_1:4974969-4974988 | Msa0002770:intron | 15.0% |
| !! | TAGATAAAATAAATATCTGA+CGG | + | chr1_1:4975227-4975246 | Msa0002770:intron | 15.0% |
| !!! | ACAGTTAAGTTTTTATAAAA+AGG | + | chr1_1:4976507-4976526 | Msa0002770:intron | 15.0% |
| !! | CAAAAGTAAAAAAAAATTCA+AGG | + | chr1_1:4976550-4976569 | Msa0002770:intron | 15.0% |
| !! | TAATAACAGTTATTAAAAAG+GGG | - | chr1_1:4976932-4976951 | None:intergenic | 15.0% |
| !!! | ATAACTGTTATTAATTTTCT+AGG | + | chr1_1:4976939-4976958 | Msa0002770:intron | 15.0% |
| !! | GAATGATTATGTATAAAATT+CGG | + | chr1_1:4977040-4977059 | Msa0002770:exon | 15.0% |
| !! | ATAATGATTATACATAAACG+AGG | - | chr1_1:4964900-4964919 | None:intergenic | 20.0% |
| !! | CTTCTAAATTCTATCTAATA+TGG | + | chr1_1:4965437-4965456 | Msa0002770:intron | 20.0% |
| !! | AGGTTAACACAAAAAAAAAA+TGG | + | chr1_1:4966119-4966138 | Msa0002770:intron | 20.0% |
| !! | AACACAAAAAAAAAATGGAT+AGG | + | chr1_1:4966124-4966143 | Msa0002770:intron | 20.0% |
| !!! | GTGCTTTAATTTCATTTTAT+CGG | + | chr1_1:4966216-4966235 | Msa0002770:intron | 20.0% |
| !!! | TGCTTTAATTTCATTTTATC+GGG | + | chr1_1:4966217-4966236 | Msa0002770:intron | 20.0% |
| !! | ATTTAACAAATAAGCTGTAA+TGG | + | chr1_1:4966801-4966820 | Msa0002770:intron | 20.0% |
| !!! | CATAAATAGAAGTATTATAC+TGG | - | chr1_1:4967219-4967238 | None:intergenic | 20.0% |
| !! | GAAAATATTTCAGAATACTT+GGG | + | chr1_1:4967333-4967352 | Msa0002770:intron | 20.0% |
| !! | TAGAGTAATTTAGATTATCT+TGG | + | chr1_1:4967364-4967383 | Msa0002770:intron | 20.0% |
| !!! | CTTGGATTATTTTTTAGAAT+TGG | + | chr1_1:4967382-4967401 | Msa0002770:intron | 20.0% |
| !! | CTAAATCCAAACTATAAATA+TGG | - | chr1_1:4967551-4967570 | None:intergenic | 20.0% |
| !! | ATTAATGTAAGTTTAAGTGT+TGG | + | chr1_1:4967578-4967597 | Msa0002770:intron | 20.0% |
| !! | ATATAGGTAATTTCAATAGT+AGG | - | chr1_1:4967941-4967960 | None:intergenic | 20.0% |
| !! | ATCTGTCATATATCATATAT+AGG | - | chr1_1:4967957-4967976 | None:intergenic | 20.0% |
| !!! | AAAGAAAAAAGAAGTATACT+TGG | + | chr1_1:4968110-4968129 | Msa0002770:intron | 20.0% |
| !! | TGTGAAATAAAAAATGAAGT+TGG | + | chr1_1:4968180-4968199 | Msa0002770:intron | 20.0% |
| !! | TTATGAGCATCAAATAAATA+TGG | - | chr1_1:4968661-4968680 | None:intergenic | 20.0% |
| !! | AAAAATCAACAATGTATGAA+GGG | - | chr1_1:4969044-4969063 | None:intergenic | 20.0% |
| !! | AAAAAATCAACAATGTATGA+AGG | - | chr1_1:4969045-4969064 | None:intergenic | 20.0% |
| !! | ATTGAATGTTAATGTATAGT+TGG | - | chr1_1:4969369-4969388 | None:intergenic | 20.0% |
| !!! | AATGTATTTTCTTCAATATG+AGG | + | chr1_1:4969550-4969569 | Msa0002770:intron | 20.0% |
| !! | ATTGCTGAATAAGAATTATA+TGG | + | chr1_1:4970705-4970724 | Msa0002770:intron | 20.0% |
| !! | TTGCTGAATAAGAATTATAT+GGG | + | chr1_1:4970706-4970725 | Msa0002770:intron | 20.0% |
| !! | GTTTAGTATTTATTGAGATT+GGG | - | chr1_1:4970736-4970755 | None:intergenic | 20.0% |
| !! | TGTTTAGTATTTATTGAGAT+TGG | - | chr1_1:4970737-4970756 | None:intergenic | 20.0% |
| !! | TAAAAGGTAAAAAATAGGTT+AGG | - | chr1_1:4970793-4970812 | None:intergenic | 20.0% |
| !! | GTTATAAACTTGTGAATTTA+TGG | + | chr1_1:4971514-4971533 | Msa0002770:intron | 20.0% |
| !! | AATTTAATGTTGTGATTTAG+AGG | + | chr1_1:4971547-4971566 | Msa0002770:intron | 20.0% |
| !!! | TTTCATCATAAGTCTATTTT+AGG | + | chr1_1:4971620-4971639 | Msa0002770:intron | 20.0% |
| !!! | TTCATCATAAGTCTATTTTA+GGG | + | chr1_1:4971621-4971640 | Msa0002770:intron | 20.0% |
| !! | TCATTTAATACAACAAGATA+TGG | + | chr1_1:4971720-4971739 | Msa0002770:intron | 20.0% |
| !! | AAATATACCCTATTTATTTC+AGG | - | chr1_1:4971878-4971897 | None:intergenic | 20.0% |
| !!! | AATTTTACTAGAGCAAAAAT+GGG | + | chr1_1:4972556-4972575 | Msa0002770:intron | 20.0% |
| !!! | TCATTTATATATGGTTTTGT+AGG | + | chr1_1:4973264-4973283 | Msa0002770:intron | 20.0% |
| !! | CTCAATTTAAATTAGTAAAG+AGG | - | chr1_1:4973756-4973775 | None:intergenic | 20.0% |
| !!! | CTAACGTTGTTTTTAATATT+AGG | + | chr1_1:4974396-4974415 | Msa0002770:intron | 20.0% |
| !! | AAAAAAAAACTCCTAGTTAT+AGG | - | chr1_1:4974850-4974869 | None:intergenic | 20.0% |
| !!! | TTATAATTTTACTAAACTGC+GGG | + | chr1_1:4974970-4974989 | Msa0002770:intron | 20.0% |
| !! | AGATAAAATAAATATCTGAC+GGG | + | chr1_1:4975228-4975247 | Msa0002770:intron | 20.0% |
| !! | TGTTGTAAATATCAATATTC+TGG | + | chr1_1:4975328-4975347 | Msa0002770:CDS | 20.0% |
| !!! | ATAAAACATTTTAGAATCTC+AGG | - | chr1_1:4976139-4976158 | None:intergenic | 20.0% |
| !!! | GATTCTAAAATGTTTTATGT+TGG | + | chr1_1:4976141-4976160 | Msa0002770:intron | 20.0% |
| !! | AATACATGAAACAAAAAAGT+TGG | + | chr1_1:4976241-4976260 | Msa0002770:intron | 20.0% |
| !! | TTCTGAATGACATAAAAAAA+GGG | - | chr1_1:4976447-4976466 | None:intergenic | 20.0% |
| !! | ATTCTGAATGACATAAAAAA+AGG | - | chr1_1:4976448-4976467 | None:intergenic | 20.0% |
| !!! | TTAAATTAGTTTTTCTTGTG+TGG | + | chr1_1:4976830-4976849 | Msa0002770:intron | 20.0% |
| !!! | TAAATTAGTTTTTCTTGTGT+GGG | + | chr1_1:4976831-4976850 | Msa0002770:intron | 20.0% |
| !! | ATTAAGATCAATTCAAAACA+TGG | - | chr1_1:4976974-4976993 | None:intergenic | 20.0% |
| !!! | TGATTTTTTTGTTACAAACT+TGG | + | chr1_1:4977335-4977354 | Msa0002770:three_prime_UTR | 20.0% |
| !! | TTTTCACTATTGAAGAAACA+GGG | - | chr1_1:4964708-4964727 | None:intergenic | 25.0% |
| !! | TTTTTCACTATTGAAGAAAC+AGG | - | chr1_1:4964709-4964728 | None:intergenic | 25.0% |
| ! | ATTATACATAAACGAGGAAT+TGG | - | chr1_1:4964894-4964913 | None:intergenic | 25.0% |
| !! | CGCATTCTTTGAATTTTATT+CGG | + | chr1_1:4964920-4964939 | Msa0002770:intron | 25.0% |
| !! | ATTTTTGCATGAGTGAAATT+AGG | + | chr1_1:4965034-4965053 | Msa0002770:intron | 25.0% |
| ! | GAACTATAAACCTAACAAAA+GGG | - | chr1_1:4965075-4965094 | None:intergenic | 25.0% |
| ! | TGAACTATAAACCTAACAAA+AGG | - | chr1_1:4965076-4965095 | None:intergenic | 25.0% |
| !!! | ATTTTGAATGTGCACTTTTT+TGG | + | chr1_1:4965512-4965531 | Msa0002770:intron | 25.0% |
| !!! | TTTTGAATGTGCACTTTTTT+GGG | + | chr1_1:4965513-4965532 | Msa0002770:intron | 25.0% |
| ! | AGTGAAATCTTAATCACAAA+TGG | + | chr1_1:4965564-4965583 | Msa0002770:intron | 25.0% |
| ! | GTGAAATCTTAATCACAAAT+GGG | + | chr1_1:4965565-4965584 | Msa0002770:intron | 25.0% |
| ! | AAGGTTAATCCTTTATAGAA+TGG | + | chr1_1:4966306-4966325 | Msa0002770:intron | 25.0% |
| !! | TCTTAGTAAATTTTTCTGCA+TGG | + | chr1_1:4966660-4966679 | Msa0002770:intron | 25.0% |
| !! | CTTAGTAAATTTTTCTGCAT+GGG | + | chr1_1:4966661-4966680 | Msa0002770:intron | 25.0% |
| !! | GTAAACAAAAGCTGAAATTT+TGG | - | chr1_1:4966723-4966742 | None:intergenic | 25.0% |
| !!! | AAATTTCAGCTTTTGTTTAC+AGG | + | chr1_1:4966723-4966742 | Msa0002770:intron | 25.0% |
| !!! | AATTTCAGCTTTTGTTTACA+GGG | + | chr1_1:4966724-4966743 | Msa0002770:intron | 25.0% |
| ! | TACATGTATCTACTTAAATG+AGG | - | chr1_1:4967272-4967291 | None:intergenic | 25.0% |
| ! | ATACATGTAGTTGGAATATA+AGG | + | chr1_1:4967311-4967330 | Msa0002770:intron | 25.0% |
| ! | GGAAAATATTTCAGAATACT+TGG | + | chr1_1:4967332-4967351 | Msa0002770:intron | 25.0% |
| !! | GATTTGTTTCTTTGTTTACT+TGG | + | chr1_1:4967494-4967513 | Msa0002770:intron | 25.0% |
| ! | TCACTTCCATATTTATAGTT+TGG | + | chr1_1:4967542-4967561 | Msa0002770:intron | 25.0% |
| !! | AGATTTTAGATAAGAAAGGT+GGG | - | chr1_1:4967629-4967648 | None:intergenic | 25.0% |
| !! | TGTGAGATTTTAGATAAGAA+AGG | - | chr1_1:4967633-4967652 | None:intergenic | 25.0% |
| ! | AGAGTTGAAGACTAAAATTA+TGG | + | chr1_1:4968069-4968088 | Msa0002770:intron | 25.0% |
| !! | AGTTTGATAACCACATAATT+TGG | + | chr1_1:4968383-4968402 | Msa0002770:intron | 25.0% |
| !! | TTATTTTCACATATCAGCTA+TGG | - | chr1_1:4968537-4968556 | None:intergenic | 25.0% |
| ! | TCAAATAAATATGGTGCATT+TGG | - | chr1_1:4968652-4968671 | None:intergenic | 25.0% |
| ! | AAACAGAAAGATAAAGGATA+CGG | - | chr1_1:4968873-4968892 | None:intergenic | 25.0% |
| ! | AACACAAAACAGAAAGATAA+AGG | - | chr1_1:4968879-4968898 | None:intergenic | 25.0% |
| ! | AAGACTAAAAATCAAGTGTT+TGG | - | chr1_1:4970050-4970069 | None:intergenic | 25.0% |
| !!! | TTTTTTTCTTCACAAAACCT+AGG | - | chr1_1:4970172-4970191 | None:intergenic | 25.0% |
| ! | AAACCCTTTAGCATTAAAAA+AGG | - | chr1_1:4970199-4970218 | None:intergenic | 25.0% |
| !!! | TTTTTTAATGCTAAAGGGTT+TGG | + | chr1_1:4970198-4970217 | Msa0002770:intron | 25.0% |
| !! | TTTTTAATGCTAAAGGGTTT+GGG | + | chr1_1:4970199-4970218 | Msa0002770:intron | 25.0% |
| !!! | TCTTCTTTTTTACCAGAAAA+AGG | - | chr1_1:4970545-4970564 | None:intergenic | 25.0% |
| ! | TATGAAAGACAAAAGATGAA+AGG | + | chr1_1:4970577-4970596 | Msa0002770:intron | 25.0% |
| ! | TGTAAAAAGAAAACTACCAT+AGG | - | chr1_1:4970909-4970928 | None:intergenic | 25.0% |
| ! | ACGAAAAAATAACAGAAACA+AGG | - | chr1_1:4971453-4971472 | None:intergenic | 25.0% |
| !!! | TCATCATAAGTCTATTTTAG+GGG | + | chr1_1:4971622-4971641 | Msa0002770:intron | 25.0% |
| ! | TATTATAACAAAGTTAGAGC+AGG | + | chr1_1:4972219-4972238 | Msa0002770:intron | 25.0% |
| !!! | TTTTGTTTTTACTGATCTAC+TGG | + | chr1_1:4972400-4972419 | Msa0002770:intron | 25.0% |
| ! | ATATGCATATGTTAGTTGAT+GGG | - | chr1_1:4972515-4972534 | None:intergenic | 25.0% |
| !! | GAATTTTACTAGAGCAAAAA+TGG | + | chr1_1:4972555-4972574 | Msa0002770:intron | 25.0% |
| !! | ATTTTACTAGAGCAAAAATG+GGG | + | chr1_1:4972557-4972576 | Msa0002770:intron | 25.0% |
| ! | GAGATTCATTCTATAAACAA+GGG | - | chr1_1:4972590-4972609 | None:intergenic | 25.0% |
| ! | TGAGATTCATTCTATAAACA+AGG | - | chr1_1:4972591-4972610 | None:intergenic | 25.0% |
| !! | CTATATTTGAGGGAATTTTT+GGG | - | chr1_1:4972777-4972796 | None:intergenic | 25.0% |
| !!! | GTTGTTGTTTTCAAATCATT+AGG | + | chr1_1:4972887-4972906 | Msa0002770:intron | 25.0% |
| !! | TTGTTTAAAATTACCACTCA+GGG | - | chr1_1:4973239-4973258 | None:intergenic | 25.0% |
| !! | ATTGTTTAAAATTACCACTC+AGG | - | chr1_1:4973240-4973259 | None:intergenic | 25.0% |
| ! | ATAACTATGGAATTCAACAT+GGG | - | chr1_1:4973367-4973386 | None:intergenic | 25.0% |
| !! | TCTTTTATTGAATTGTTAGG+GGG | - | chr1_1:4973673-4973692 | None:intergenic | 25.0% |
| !! | GTCTTTTATTGAATTGTTAG+GGG | - | chr1_1:4973674-4973693 | None:intergenic | 25.0% |
| !! | GGTCTTTTATTGAATTGTTA+GGG | - | chr1_1:4973675-4973694 | None:intergenic | 25.0% |
| ! | TGAGAAATTTATTGAGTTCA+TGG | + | chr1_1:4973772-4973791 | Msa0002770:intron | 25.0% |
| ! | TATTACAAGATAAGATACCA+AGG | - | chr1_1:4973993-4974012 | None:intergenic | 25.0% |
| ! | TTAGTTAGTAATACAAACAC+AGG | - | chr1_1:4974016-4974035 | None:intergenic | 25.0% |
| ! | TAGTTATAGGAAACAATCAA+CGG | - | chr1_1:4974837-4974856 | None:intergenic | 25.0% |
| ! | TATATATCGCATAATTGTGT+AGG | - | chr1_1:4975209-4975228 | None:intergenic | 25.0% |
| !!! | AACTCTAATTTTGATATCCT+TGG | + | chr1_1:4975820-4975839 | Msa0002770:intron | 25.0% |
| ! | TAATGTCAGCAAAAACAAAT+AGG | + | chr1_1:4975892-4975911 | Msa0002770:intron | 25.0% |
| !!! | TCTTTTCCTTTTTCAGAAAA+GGG | - | chr1_1:4975999-4976018 | None:intergenic | 25.0% |
| !!! | TTCTTTTCCTTTTTCAGAAA+AGG | - | chr1_1:4976000-4976019 | None:intergenic | 25.0% |
| !!! | TATGTTGGATTATTTTTGTG+TGG | + | chr1_1:4976156-4976175 | Msa0002770:intron | 25.0% |
| ! | AATTGAACTAGATATATACC+AGG | - | chr1_1:4976275-4976294 | None:intergenic | 25.0% |
| ! | GGAATCCTTAAATAGAAATT+TGG | - | chr1_1:4976576-4976595 | None:intergenic | 25.0% |
| !! | GTGAAAATAAACAAGTTTTG+AGG | + | chr1_1:4976628-4976647 | Msa0002770:intron | 25.0% |
| !! | CTGAAATTTGAGTTAGATTT+AGG | + | chr1_1:4976692-4976711 | Msa0002770:intron | 25.0% |
| !! | ATTTTGTTGATATTCCATGA+TGG | + | chr1_1:4976895-4976914 | Msa0002770:intron | 25.0% |
| ! | TACATATTGCTGTACAATAT+TGG | + | chr1_1:4977181-4977200 | Msa0002770:three_prime_UTR | 25.0% |
| ! | ATTAGAAGTTAGAATTGAGA+TGG | + | chr1_1:4977272-4977291 | Msa0002770:three_prime_UTR | 25.0% |
| ! | TGGCATCATATAAATTACAT+TGG | + | chr1_1:4977292-4977311 | Msa0002770:three_prime_UTR | 25.0% |
| AAAAGCTAAAAAGGTGAATG+AGG | - | chr1_1:4964851-4964870 | None:intergenic | 30.0% | |
| CGATTATCGAAAAGCTAAAA+AGG | - | chr1_1:4964860-4964879 | None:intergenic | 30.0% | |
| GTATGATTATCGTGTAGTTT+AGG | + | chr1_1:4965159-4965178 | Msa0002770:intron | 30.0% | |
| ! | TGTGCTTGATGTTTTTCATT+TGG | + | chr1_1:4965349-4965368 | Msa0002770:intron | 30.0% |
| ! | TTTAGAAGCTTTTCATTACC+AGG | - | chr1_1:4965425-4965444 | None:intergenic | 30.0% |
| !!! | TTTGAATGTGCACTTTTTTG+GGG | + | chr1_1:4965514-4965533 | Msa0002770:intron | 30.0% |
| TTTGTGTCAGCTAAAATACT+TGG | + | chr1_1:4965654-4965673 | Msa0002770:intron | 30.0% | |
| ACAGTTATTTATGCATGTGA+AGG | + | chr1_1:4965861-4965880 | Msa0002770:intron | 30.0% | |
| CAGTTATTTATGCATGTGAA+GGG | + | chr1_1:4965862-4965881 | Msa0002770:intron | 30.0% | |
| AAACATGAGTTCCTAATTGA+AGG | + | chr1_1:4965924-4965943 | Msa0002770:intron | 30.0% | |
| TGATTAATGAGCATTACCTA+AGG | + | chr1_1:4965975-4965994 | Msa0002770:intron | 30.0% | |
| !! | TGTTAACCTTCTAGTTTCTA+GGG | - | chr1_1:4966108-4966127 | None:intergenic | 30.0% |
| CTTGAGAACAAGAGTAAAAT+AGG | - | chr1_1:4966189-4966208 | None:intergenic | 30.0% | |
| TTACTCTTGTTCTCAAGTTA+AGG | + | chr1_1:4966192-4966211 | Msa0002770:intron | 30.0% | |
| ! | TTCATTTTATCGGGATTGAT+TGG | + | chr1_1:4966226-4966245 | Msa0002770:intron | 30.0% |
| ! | TCATTTTATCGGGATTGATT+GGG | + | chr1_1:4966227-4966246 | Msa0002770:intron | 30.0% |
| ! | AATCCTTTATAGAATGGACT+TGG | + | chr1_1:4966312-4966331 | Msa0002770:intron | 30.0% |
| ! | CAAAAAGCATGCTTATAAGA+TGG | - | chr1_1:4966364-4966383 | None:intergenic | 30.0% |
| ! | CATCTTATAAGCATGCTTTT+TGG | + | chr1_1:4966362-4966381 | Msa0002770:intron | 30.0% |
| CTTACACTCTATACATGAAA+TGG | + | chr1_1:4966389-4966408 | Msa0002770:intron | 30.0% | |
| GAAGATCAATTCATGCAAAA+TGG | - | chr1_1:4966751-4966770 | None:intergenic | 30.0% | |
| ATTGATCTTCACATGTAAAG+AGG | + | chr1_1:4966761-4966780 | Msa0002770:intron | 30.0% | |
| ! | CATTTTTGTAGTGTATTGTG+TGG | + | chr1_1:4967001-4967020 | Msa0002770:intron | 30.0% |
| ! | TTTGAGCTTTATCTCAATAG+TGG | - | chr1_1:4967093-4967112 | None:intergenic | 30.0% |
| ACAAACTTATACTCTCAAAG+TGG | + | chr1_1:4967124-4967143 | Msa0002770:CDS | 30.0% | |
| TACATGTATCTACTTGAATG+AGG | - | chr1_1:4967300-4967319 | None:intergenic | 30.0% | |
| TTCAAGTAGATACATGTAGT+TGG | + | chr1_1:4967302-4967321 | Msa0002770:intron | 30.0% | |
| !! | ATTGTTGTATATCGACTCTT+AGG | + | chr1_1:4967442-4967461 | Msa0002770:intron | 30.0% |
| ! | GAGATTTTAGATAAGAAAGG+TGG | - | chr1_1:4967630-4967649 | None:intergenic | 30.0% |
| GGCAAGTTTACTTAAACTTT+GGG | - | chr1_1:4967883-4967902 | None:intergenic | 30.0% | |
| AGGCAAGTTTACTTAAACTT+TGG | - | chr1_1:4967884-4967903 | None:intergenic | 30.0% | |
| ! | TCTTGTGAGTTTAAGATTCT+AGG | - | chr1_1:4968308-4968327 | None:intergenic | 30.0% |
| ACAAATGGTACCAAATTATG+TGG | - | chr1_1:4968396-4968415 | None:intergenic | 30.0% | |
| !! | TCAGTTTTGATGTTTTTCGT+TGG | + | chr1_1:4968575-4968594 | Msa0002770:intron | 30.0% |
| TGAGTTATGACATAGTTGTT+TGG | - | chr1_1:4968618-4968637 | None:intergenic | 30.0% | |
| AAGTATCTTGATCATTTAGC+CGG | + | chr1_1:4968701-4968720 | Msa0002770:intron | 30.0% | |
| ! | TGTGTTTAACTTCACAAAGA+AGG | + | chr1_1:4968893-4968912 | Msa0002770:intron | 30.0% |
| ! | CTCAAACTCTTAATGTTTTG+TGG | - | chr1_1:4969189-4969208 | None:intergenic | 30.0% |
| CACAAAACATTAAGAGTTTG+AGG | + | chr1_1:4969187-4969206 | Msa0002770:intron | 30.0% | |
| !! | ATTAAGAGTTTGAGGTTTTG+AGG | + | chr1_1:4969195-4969214 | Msa0002770:intron | 30.0% |
| TTTAAACTTGAGTGTCTAGA+AGG | - | chr1_1:4969454-4969473 | None:intergenic | 30.0% | |
| TTCAACATCTACTTGTGTTA+GGG | - | chr1_1:4969581-4969600 | None:intergenic | 30.0% | |
| ! | AATCCTGATCTTTGTTTACT+TGG | + | chr1_1:4969720-4969739 | Msa0002770:intron | 30.0% |
| AATCCAAGTAAACAAAGATC+AGG | - | chr1_1:4969726-4969745 | None:intergenic | 30.0% | |
| GTTTACTTGGATTTACAATG+TGG | + | chr1_1:4969733-4969752 | Msa0002770:intron | 30.0% | |
| TATCTCCATATAAAACATCC+TGG | + | chr1_1:4969922-4969941 | Msa0002770:intron | 30.0% | |
| CAAGTGAACTTCTATAAAAC+TGG | - | chr1_1:4970126-4970145 | None:intergenic | 30.0% | |
| !!! | ACCTCCTTTTTTAATGCTAA+AGG | + | chr1_1:4970192-4970211 | Msa0002770:intron | 30.0% |
| !!! | CCTCCTTTTTTAATGCTAAA+GGG | + | chr1_1:4970193-4970212 | Msa0002770:intron | 30.0% |
| AGATTAGGTCAAAGATTTGA+AGG | - | chr1_1:4970665-4970684 | None:intergenic | 30.0% | |
| ATCTTTGACCTAATCTTTCA+TGG | + | chr1_1:4970669-4970688 | Msa0002770:intron | 30.0% | |
| TGAATAAGAATTATATGGGC+CGG | + | chr1_1:4970710-4970729 | Msa0002770:intron | 30.0% | |
| !! | ATGGCTTACTTTTCTTTTCT+TGG | - | chr1_1:4970841-4970860 | None:intergenic | 30.0% |
| ! | AAATTTTCAGTTGTTCTGCA+TGG | - | chr1_1:4971700-4971719 | None:intergenic | 30.0% |
| AATGTTTCAATGAATACACC+TGG | - | chr1_1:4971824-4971843 | None:intergenic | 30.0% | |
| AGTTCCACCTGAAATAAATA+GGG | + | chr1_1:4971868-4971887 | Msa0002770:CDS | 30.0% | |
| TATACCCTATTTATTTCAGG+TGG | - | chr1_1:4971875-4971894 | None:intergenic | 30.0% | |
| AATAAGAGATGAGATTGAGA+GGG | - | chr1_1:4972311-4972330 | None:intergenic | 30.0% | |
| AAATAAGAGATGAGATTGAG+AGG | - | chr1_1:4972312-4972331 | None:intergenic | 30.0% | |
| AGTGGGTAATTAGAGAAATA+AGG | - | chr1_1:4972348-4972367 | None:intergenic | 30.0% | |
| GATATGCATATGTTAGTTGA+TGG | - | chr1_1:4972516-4972535 | None:intergenic | 30.0% | |
| ATGCATATCAATCTACTGAT+AGG | + | chr1_1:4972527-4972546 | Msa0002770:intron | 30.0% | |
| ! | TTTTACTAGAGCAAAAATGG+GGG | + | chr1_1:4972558-4972577 | Msa0002770:intron | 30.0% |
| ATAGGTGTATGTTAGTTGAT+GGG | - | chr1_1:4972661-4972680 | None:intergenic | 30.0% | |
| ACTGGAATTATATTAGAGCA+AGG | + | chr1_1:4972697-4972716 | Msa0002770:intron | 30.0% | |
| AATTATATTAGAGCAAGGAG+AGG | + | chr1_1:4972702-4972721 | Msa0002770:intron | 30.0% | |
| TCAAACTTCTGCAATTCATT+CGG | - | chr1_1:4972741-4972760 | None:intergenic | 30.0% | |
| ! | CCTATATTTGAGGGAATTTT+TGG | - | chr1_1:4972778-4972797 | None:intergenic | 30.0% |
| CCAAAAATTCCCTCAAATAT+AGG | + | chr1_1:4972775-4972794 | Msa0002770:intron | 30.0% | |
| AAAATTCCCTCAAATATAGG+TGG | + | chr1_1:4972778-4972797 | Msa0002770:intron | 30.0% | |
| ! | CATGGGTTATTAGAGAAATA+AGG | - | chr1_1:4972808-4972827 | None:intergenic | 30.0% |
| ! | TGTTTTACTTCATCTCTCAT+GGG | - | chr1_1:4972825-4972844 | None:intergenic | 30.0% |
| TATTACATCTTGGCTGTAAT+TGG | + | chr1_1:4972971-4972990 | Msa0002770:intron | 30.0% | |
| AGAGTGTATCAGATAGATTA+CGG | + | chr1_1:4973092-4973111 | Msa0002770:CDS | 30.0% | |
| ! | GATAGATTACGGAATACTTT+TGG | + | chr1_1:4973103-4973122 | Msa0002770:CDS | 30.0% |
| ! | TGTTTAAAATTACCACTCAG+GGG | - | chr1_1:4973238-4973257 | None:intergenic | 30.0% |
| AGTCGTGAATTTGATACAAT+TGG | + | chr1_1:4973334-4973353 | Msa0002770:CDS | 30.0% | |
| GATAACTATGGAATTCAACA+TGG | - | chr1_1:4973368-4973387 | None:intergenic | 30.0% | |
| CAATGTAACGATGATAACTA+TGG | - | chr1_1:4973380-4973399 | None:intergenic | 30.0% | |
| !! | AGCTTGTTATTTGAGAATGA+TGG | + | chr1_1:4973411-4973430 | Msa0002770:CDS | 30.0% |
| ! | TTTTATTGAATTGTTAGGGG+GGG | - | chr1_1:4973671-4973690 | None:intergenic | 30.0% |
| ! | CTTTTATTGAATTGTTAGGG+GGG | - | chr1_1:4973672-4973691 | None:intergenic | 30.0% |
| ! | GGGTCTTTTATTGAATTGTT+AGG | - | chr1_1:4973676-4973695 | None:intergenic | 30.0% |
| AAAGCAGAAAATAAAGGAGA+GGG | - | chr1_1:4973705-4973724 | None:intergenic | 30.0% | |
| GAAAGGAAAGCAGAAAATAA+AGG | - | chr1_1:4973711-4973730 | None:intergenic | 30.0% | |
| CTTTCCTTTCTCAAGTAATT+GGG | + | chr1_1:4973721-4973740 | Msa0002770:intron | 30.0% | |
| !! | GGACTATTGTTTTATAACCT+TGG | + | chr1_1:4973892-4973911 | Msa0002770:CDS | 30.0% |
| ! | AGAGCATTATGCAAAAATAC+AGG | - | chr1_1:4974360-4974379 | None:intergenic | 30.0% |
| GTTGATTGTTTCCTATAACT+AGG | + | chr1_1:4974836-4974855 | Msa0002770:intron | 30.0% | |
| ! | TGAAGTATTCCTCTATATCT+AGG | + | chr1_1:4974876-4974895 | Msa0002770:intron | 30.0% |
| AAGTGAAACACTAAAATGGA+AGG | - | chr1_1:4975134-4975153 | None:intergenic | 30.0% | |
| ! | GGCTTTAATAAATTTGTGAC+TGG | + | chr1_1:4975249-4975268 | Msa0002770:intron | 30.0% |
| TTTACAACACGAGAATTAGA+TGG | - | chr1_1:4975317-4975336 | None:intergenic | 30.0% | |
| AAATTCTTCTGATGATCATG+CGG | + | chr1_1:4975628-4975647 | Msa0002770:CDS | 30.0% | |
| !! | ATCAGAATTCTGAAGTTCTA+CGG | - | chr1_1:4975766-4975785 | None:intergenic | 30.0% |
| ! | TTCAATTTTCACAACTACCA+TGG | - | chr1_1:4975965-4975984 | None:intergenic | 30.0% |
| !! | TAATCACCCTTTTCTGAAAA+AGG | + | chr1_1:4975990-4976009 | Msa0002770:intron | 30.0% |
| TGACAAACAGGTATATATGT+AGG | + | chr1_1:4976023-4976042 | Msa0002770:intron | 30.0% | |
| !!! | AACATTTTAGAATCTCAGGA+AGG | - | chr1_1:4976135-4976154 | None:intergenic | 30.0% |
| ATGTATTCAACCCATGATAA+AGG | - | chr1_1:4976228-4976247 | None:intergenic | 30.0% | |
| AACTAGATATATACCAGGAA+AGG | - | chr1_1:4976270-4976289 | None:intergenic | 30.0% | |
| TACTGAAAAGAGTTTATCAC+AGG | - | chr1_1:4976311-4976330 | None:intergenic | 30.0% | |
| TGTTAATGCAATGGATGATT+TGG | - | chr1_1:4976362-4976381 | None:intergenic | 30.0% | |
| GTACAATCATGTTAATGCAA+TGG | - | chr1_1:4976371-4976390 | None:intergenic | 30.0% | |
| CAAGGCCAAATTTCTATTTA+AGG | + | chr1_1:4976568-4976587 | Msa0002770:intron | 30.0% | |
| CTATTTAAGGATTCCTTAAC+CGG | + | chr1_1:4976581-4976600 | Msa0002770:intron | 30.0% | |
| TATTTAAGGATTCCTTAACC+GGG | + | chr1_1:4976582-4976601 | Msa0002770:intron | 30.0% | |
| GATCAATTCAAAACATGGTA+AGG | - | chr1_1:4976969-4976988 | None:intergenic | 30.0% | |
| ! | CTTATGACCACAATTTTCAA+AGG | - | chr1_1:4977066-4977085 | None:intergenic | 30.0% |
| ! | TGGTTCTTTTGATGTCAAAT+TGG | + | chr1_1:4977101-4977120 | Msa0002770:three_prime_UTR | 30.0% |
| TACAGCAATATGTATACACT+TGG | - | chr1_1:4977175-4977194 | None:intergenic | 30.0% | |
| TTGCTGTACAATATTGGAAT+TGG | + | chr1_1:4977187-4977206 | Msa0002770:three_prime_UTR | 30.0% | |
| !!! | GTTTTGATTATGCTTGGAAT+TGG | + | chr1_1:4977231-4977250 | Msa0002770:three_prime_UTR | 30.0% |
| ACATAAACGAGGAATTGGAA+TGG | - | chr1_1:4964889-4964908 | None:intergenic | 35.0% | |
| CATCGATGTTCTTCATAACT+AGG | + | chr1_1:4964973-4964992 | Msa0002770:intron | 35.0% | |
| ! | GAATTCGTTTCCCTTTTGTT+AGG | + | chr1_1:4965062-4965081 | Msa0002770:intron | 35.0% |
| ATGATTCAGTCGTGTAGTTT+AGG | + | chr1_1:4965111-4965130 | Msa0002770:intron | 35.0% | |
| !!! | TGTGTGTTTTGATTTGTTCC+TGG | + | chr1_1:4965404-4965423 | Msa0002770:intron | 35.0% |
| ACTACATTGCAAAAGCTGTA+GGG | - | chr1_1:4965547-4965566 | None:intergenic | 35.0% | |
| TCAGCTAAAATACTTGGAGT+TGG | + | chr1_1:4965660-4965679 | Msa0002770:intron | 35.0% | |
| TTTGTGCTCATGCACAAAAA+AGG | + | chr1_1:4965889-4965908 | Msa0002770:intron | 35.0% | |
| TGTATCCAGTTCCTTCAATT+AGG | - | chr1_1:4965938-4965957 | None:intergenic | 35.0% | |
| TTACCTAAGGCTGAATCATT+AGG | + | chr1_1:4965988-4966007 | Msa0002770:intron | 35.0% | |
| TACCTAAGGCTGAATCATTA+GGG | + | chr1_1:4965989-4966008 | Msa0002770:intron | 35.0% | |
| TTCTACCTAGGAATCAAACT+CGG | - | chr1_1:4966020-4966039 | None:intergenic | 35.0% | |
| !! | GTTAACCTTCTAGTTTCTAG+GGG | - | chr1_1:4966107-4966126 | None:intergenic | 35.0% |
| !! | GTGTTAACCTTCTAGTTTCT+AGG | - | chr1_1:4966109-4966128 | None:intergenic | 35.0% |
| CTAACAATACCCAACAAATC+TGG | - | chr1_1:4966150-4966169 | None:intergenic | 35.0% | |
| GTACCAAGTCCATTCTATAA+AGG | - | chr1_1:4966318-4966337 | None:intergenic | 35.0% | |
| AAAGCATGCTTATAAGATGG+AGG | - | chr1_1:4966361-4966380 | None:intergenic | 35.0% | |
| AGTTTGACTCTCATACTGAA+TGG | + | chr1_1:4966491-4966510 | Msa0002770:intron | 35.0% | |
| GTTTGACTCTCATACTGAAT+GGG | + | chr1_1:4966492-4966511 | Msa0002770:intron | 35.0% | |
| ACGGCATATGTTCATTGAAT+AGG | + | chr1_1:4966576-4966595 | Msa0002770:intron | 35.0% | |
| ! | AAGAGGCTTTTATACAAGTC+AGG | + | chr1_1:4966778-4966797 | Msa0002770:intron | 35.0% |
| !!! | TAGCTATTACTTTTTCCACC+AGG | - | chr1_1:4966952-4966971 | None:intergenic | 35.0% |
| TACTCTCAAAGTGGATAAAC+AGG | + | chr1_1:4967133-4967152 | Msa0002770:CDS | 35.0% | |
| ! | AAGTCTTATCTCACTAGATG+GGG | - | chr1_1:4967415-4967434 | None:intergenic | 35.0% |
| ! | CAAGTCTTATCTCACTAGAT+GGG | - | chr1_1:4967416-4967435 | None:intergenic | 35.0% |
| AAAATCTCACAAGTTCAGCA+TGG | + | chr1_1:4967642-4967661 | Msa0002770:intron | 35.0% | |
| GTATTGCCATATTAAAGCAG+AGG | + | chr1_1:4967664-4967683 | Msa0002770:intron | 35.0% | |
| AGCATTCCTCTGCTTTAATA+TGG | - | chr1_1:4967673-4967692 | None:intergenic | 35.0% | |
| ! | TATTGCCAAAAAGTGTGCAA+TGG | - | chr1_1:4967727-4967746 | None:intergenic | 35.0% |
| TCCTGTTCTCTCTTTATTGA+TGG | + | chr1_1:4967754-4967773 | Msa0002770:intron | 35.0% | |
| CCTGTTCTCTCTTTATTGAT+GGG | + | chr1_1:4967755-4967774 | Msa0002770:intron | 35.0% | |
| !! | TGATGGGTTTCTTCTACTTA+CGG | + | chr1_1:4967771-4967790 | Msa0002770:intron | 35.0% |
| !!! | TGATTCAAGGCTTTTGAGAT+AGG | - | chr1_1:4967806-4967825 | None:intergenic | 35.0% |
| TCGCAAGATGAAATGATTCA+AGG | - | chr1_1:4967819-4967838 | None:intergenic | 35.0% | |
| !!! | TTGCGATTTTGTCATTTTGC+TGG | + | chr1_1:4967833-4967852 | Msa0002770:intron | 35.0% |
| !! | AACTTTGGGTTTTACAACCT+GGG | - | chr1_1:4967869-4967888 | None:intergenic | 35.0% |
| !! | AAACTTTGGGTTTTACAACC+TGG | - | chr1_1:4967870-4967889 | None:intergenic | 35.0% |
| CAAGATGGACGAAAAACAAA+TGG | - | chr1_1:4968411-4968430 | None:intergenic | 35.0% | |
| TCAAGCAACTTCTTTCAAGA+TGG | - | chr1_1:4968426-4968445 | None:intergenic | 35.0% | |
| GCAGCTTTCTAACATTGATA+AGG | - | chr1_1:4968470-4968489 | None:intergenic | 35.0% | |
| ! | AATGGATTTCAAGAAGAACC+TGG | - | chr1_1:4968507-4968526 | None:intergenic | 35.0% |
| GTTATGACATAGTTGTTTGG+AGG | - | chr1_1:4968615-4968634 | None:intergenic | 35.0% | |
| CAATCTGTTCTTTCAAAGCA+GGG | - | chr1_1:4968765-4968784 | None:intergenic | 35.0% | |
| ACGATATGGAATGAGAAATC+TGG | - | chr1_1:4968955-4968974 | None:intergenic | 35.0% | |
| !! | TTCAGGTTGTATTTGCACAA+TGG | - | chr1_1:4969015-4969034 | None:intergenic | 35.0% |
| ATTGTGCAAATACAACCTGA+AGG | + | chr1_1:4969014-4969033 | Msa0002770:intron | 35.0% | |
| ATAGACCAGATGTTACAGTA+AGG | - | chr1_1:4969157-4969176 | None:intergenic | 35.0% | |
| !!! | TTTGAGGTTTTGAGGTAGAA+AGG | + | chr1_1:4969203-4969222 | Msa0002770:intron | 35.0% |
| GGTACATCAAAGGATGAAAA+TGG | + | chr1_1:4969224-4969243 | Msa0002770:intron | 35.0% | |
| CATCTAGGCATAACAAATCA+TGG | - | chr1_1:4969495-4969514 | None:intergenic | 35.0% | |
| CTTCAACATCTACTTGTGTT+AGG | - | chr1_1:4969582-4969601 | None:intergenic | 35.0% | |
| ACACAAGTAGATGTTGAAGA+TGG | + | chr1_1:4969583-4969602 | Msa0002770:intron | 35.0% | |
| ! | AAAGGTTAGGCTGCTATTTA+TGG | - | chr1_1:4969855-4969874 | None:intergenic | 35.0% |
| TTTAGAAGACCAGAAAGGTT+AGG | - | chr1_1:4969868-4969887 | None:intergenic | 35.0% | |
| ! | AACCTTTCTGGTCTTCTAAA+AGG | + | chr1_1:4969868-4969887 | Msa0002770:intron | 35.0% |
| ! | ACCTTTCTGGTCTTCTAAAA+GGG | + | chr1_1:4969869-4969888 | Msa0002770:intron | 35.0% |
| CCCTTTAGCATTAAAAAAGG+AGG | - | chr1_1:4970196-4970215 | None:intergenic | 35.0% | |
| ! | TAAGTGTTTTGCCCTAAACA+GGG | - | chr1_1:4970301-4970320 | None:intergenic | 35.0% |
| CTTATTAAAACACAGCTCAG+TGG | - | chr1_1:4970346-4970365 | None:intergenic | 35.0% | |
| TTACCAGAAAAAGGATGAAG+CGG | - | chr1_1:4970536-4970555 | None:intergenic | 35.0% | |
| GAAAGACAAAAGATGAAAGG+AGG | + | chr1_1:4970580-4970599 | Msa0002770:intron | 35.0% | |
| AATCTGGTTGTTTATGCTTG+CGG | + | chr1_1:4970633-4970652 | Msa0002770:intron | 35.0% | |
| AGTATTTATTGAGATTGGGC+CGG | - | chr1_1:4970732-4970751 | None:intergenic | 35.0% | |
| CACAAGAAACAGAGAAATAG+AGG | - | chr1_1:4971419-4971438 | None:intergenic | 35.0% | |
| ACCATAATTCATGAGTACAG+AGG | - | chr1_1:4971496-4971515 | None:intergenic | 35.0% | |
| !! | TCATAAGTCTATTTTAGGGG+TGG | + | chr1_1:4971625-4971644 | Msa0002770:intron | 35.0% |
| !! | CATAAGTCTATTTTAGGGGT+GGG | + | chr1_1:4971626-4971645 | Msa0002770:intron | 35.0% |
| !! | ATAAGTCTATTTTAGGGGTG+GGG | + | chr1_1:4971627-4971646 | Msa0002770:intron | 35.0% |
| AACATTCAACGTTCCTATTC+AGG | + | chr1_1:4971838-4971857 | Msa0002770:CDS | 35.0% | |
| ACATTCAACGTTCCTATTCA+GGG | + | chr1_1:4971839-4971858 | Msa0002770:CDS | 35.0% | |
| GAGTTCCACCTGAAATAAAT+AGG | + | chr1_1:4971867-4971886 | Msa0002770:CDS | 35.0% | |
| ! | CTTCCAAATTTTGCAAGTAG+TGG | + | chr1_1:4972006-4972025 | Msa0002770:CDS | 35.0% |
| TCACCACTACTTGCAAAATT+TGG | - | chr1_1:4972012-4972031 | None:intergenic | 35.0% | |
| ! | AATTTTGCAAGTAGTGGTGA+AGG | + | chr1_1:4972012-4972031 | Msa0002770:CDS | 35.0% |
| ! | ATTTTGCAAGTAGTGGTGAA+GGG | + | chr1_1:4972013-4972032 | Msa0002770:CDS | 35.0% |
| !! | CTAGCAAACTTGGTGTAATA+TGG | + | chr1_1:4972376-4972395 | Msa0002770:intron | 35.0% |
| TAGAATGAATCTCAGAACTG+TGG | + | chr1_1:4972597-4972616 | Msa0002770:intron | 35.0% | |
| AGAATGAATCTCAGAACTGT+GGG | + | chr1_1:4972598-4972617 | Msa0002770:intron | 35.0% | |
| GATAGGTGTATGTTAGTTGA+TGG | - | chr1_1:4972662-4972681 | None:intergenic | 35.0% | |
| ACACCTATCAATCGATTGAT+AGG | + | chr1_1:4972673-4972692 | Msa0002770:intron | 35.0% | |
| GTTCCTATCAATCGATTGAT+AGG | - | chr1_1:4972679-4972698 | None:intergenic | 35.0% | |
| ATCAATCGATTGATAGGAAC+TGG | + | chr1_1:4972679-4972698 | Msa0002770:intron | 35.0% | |
| GCAATTCATTCGGTAAACAA+GGG | - | chr1_1:4972731-4972750 | None:intergenic | 35.0% | |
| TGCAATTCATTCGGTAAACA+AGG | - | chr1_1:4972732-4972751 | None:intergenic | 35.0% | |
| GAATGAATTGCAGAAGTTTG+AGG | + | chr1_1:4972740-4972759 | Msa0002770:intron | 35.0% | |
| !! | TATTTGAGGGAATTTTTGGG+AGG | - | chr1_1:4972774-4972793 | None:intergenic | 35.0% |
| ! | CTGTTTTACTTCATCTCTCA+TGG | - | chr1_1:4972826-4972845 | None:intergenic | 35.0% |
| GATGAAGTAAAACAGAGAGA+AGG | + | chr1_1:4972831-4972850 | Msa0002770:intron | 35.0% | |
| TGAACCAGTTTGATCAAGTA+GGG | - | chr1_1:4973071-4973090 | None:intergenic | 35.0% | |
| GCATCAGAATTAAGTAGAGA+AGG | - | chr1_1:4973186-4973205 | None:intergenic | 35.0% | |
| ! | GTTTAAAATTACCACTCAGG+GGG | - | chr1_1:4973237-4973256 | None:intergenic | 35.0% |
| !!! | ATGGTTTTGTAGGTTATTCC+TGG | + | chr1_1:4973274-4973293 | Msa0002770:intron | 35.0% |
| ACTCATATGACTTAGGTACT+GGG | - | chr1_1:4973317-4973336 | None:intergenic | 35.0% | |
| ATTCACGACTCATATGACTT+AGG | - | chr1_1:4973324-4973343 | None:intergenic | 35.0% | |
| TCAAATAACAAGCTTGCAGA+AGG | - | chr1_1:4973405-4973424 | None:intergenic | 35.0% | |
| ! | ATTTTACTTGCAGTCAGAGA+AGG | + | chr1_1:4973439-4973458 | Msa0002770:CDS | 35.0% |
| ! | TTTTACTTGCAGTCAGAGAA+GGG | + | chr1_1:4973440-4973459 | Msa0002770:CDS | 35.0% |
| GCTCATAGTAATGAAGCAAT+GGG | + | chr1_1:4973484-4973503 | Msa0002770:CDS | 35.0% | |
| AAATGATCATCGAACAAGCT+GGG | + | chr1_1:4973590-4973609 | Msa0002770:CDS | 35.0% | |
| TTTATTGAATTGTTAGGGGG+GGG | - | chr1_1:4973670-4973689 | None:intergenic | 35.0% | |
| GAAAGCAGAAAATAAAGGAG+AGG | - | chr1_1:4973706-4973725 | None:intergenic | 35.0% | |
| GCTTTCCTTTCTCAAGTAAT+TGG | + | chr1_1:4973720-4973739 | Msa0002770:intron | 35.0% | |
| ACAAGATAAGATACCAAGGA+GGG | - | chr1_1:4973989-4974008 | None:intergenic | 35.0% | |
| TACAAGATAAGATACCAAGG+AGG | - | chr1_1:4973990-4974009 | None:intergenic | 35.0% | |
| ATGATATGATTAGGACCAGT+AGG | - | chr1_1:4974100-4974119 | None:intergenic | 35.0% | |
| TACTGGTCCTAATCATATCA+TGG | + | chr1_1:4974099-4974118 | Msa0002770:CDS | 35.0% | |
| TCCTAATCATATCATGGTTC+AGG | + | chr1_1:4974105-4974124 | Msa0002770:CDS | 35.0% | |
| ACCTGAACCATGATATGATT+AGG | - | chr1_1:4974109-4974128 | None:intergenic | 35.0% | |
| ! | GATAGTTTTCATGACAAGCA+AGG | - | chr1_1:4974149-4974168 | None:intergenic | 35.0% |
| ! | CTGTTGCTTATTGAAATGCA+TGG | + | chr1_1:4974172-4974191 | Msa0002770:intron | 35.0% |
| ATCGATATACAGATAAGACG+AGG | + | chr1_1:4974309-4974328 | Msa0002770:CDS | 35.0% | |
| AACCATCTGGTAATTCTACT+GGG | + | chr1_1:4974625-4974644 | Msa0002770:intron | 35.0% | |
| AGATTTCAACGTGTAACTAC+AGG | + | chr1_1:4974669-4974688 | Msa0002770:intron | 35.0% | |
| GATTTCAACGTGTAACTACA+GGG | + | chr1_1:4974670-4974689 | Msa0002770:intron | 35.0% | |
| TGAGAAACTCCTAGATATAG+AGG | - | chr1_1:4974888-4974907 | None:intergenic | 35.0% | |
| GATGTGGTTTCTACTCAATT+TGG | + | chr1_1:4975004-4975023 | Msa0002770:intron | 35.0% | |
| ! | CATTGCGACATTTCTACTTT+TGG | + | chr1_1:4975027-4975046 | Msa0002770:intron | 35.0% |
| CGCAAAGTGAAACACTAAAA+TGG | - | chr1_1:4975138-4975157 | None:intergenic | 35.0% | |
| AATATCAATATTCTGGCAGC+TGG | + | chr1_1:4975335-4975354 | Msa0002770:CDS | 35.0% | |
| !! | TCAGATTCTTGGTTGTTTTG+CGG | - | chr1_1:4975365-4975384 | None:intergenic | 35.0% |
| GTATCTGTCTATCAGATTCT+TGG | - | chr1_1:4975376-4975395 | None:intergenic | 35.0% | |
| AAAAACTGATACACACTGCT+TGG | - | chr1_1:4975398-4975417 | None:intergenic | 35.0% | |
| ! | CCTATTTGTTGAGATATGAC+CGG | - | chr1_1:4975599-4975618 | None:intergenic | 35.0% |
| CGGTCATATCTCAACAAATA+GGG | + | chr1_1:4975597-4975616 | Msa0002770:CDS | 35.0% | |
| !! | TCAGAATTCTGAAGTTCTAC+GGG | - | chr1_1:4975765-4975784 | None:intergenic | 35.0% |
| TCAGAATTCTGATGCATACT+AGG | + | chr1_1:4975773-4975792 | Msa0002770:intron | 35.0% | |
| ATATACATGTTCAGCAACCT+GGG | - | chr1_1:4975873-4975892 | None:intergenic | 35.0% | |
| TATATACATGTTCAGCAACC+TGG | - | chr1_1:4975874-4975893 | None:intergenic | 35.0% | |
| GGAAAAGAAAACTGACAAAC+AGG | + | chr1_1:4976011-4976030 | Msa0002770:intron | 35.0% | |
| ! | ATGTAGGTTGAAACTAATGC+TGG | + | chr1_1:4976039-4976058 | Msa0002770:intron | 35.0% |
| ! | TGTAGGTTGAAACTAATGCT+GGG | + | chr1_1:4976040-4976059 | Msa0002770:intron | 35.0% |
| ! | AAGGTAAAAGGGTAACCTTT+TGG | - | chr1_1:4976116-4976135 | None:intergenic | 35.0% |
| AGAATCTCAGGAAGGTAAAA+GGG | - | chr1_1:4976127-4976146 | None:intergenic | 35.0% | |
| TAGAATCTCAGGAAGGTAAA+AGG | - | chr1_1:4976128-4976147 | None:intergenic | 35.0% | |
| !! | AAAAAGTTGGTATCCTTTCC+TGG | + | chr1_1:4976254-4976273 | Msa0002770:intron | 35.0% |
| TGAAAAGAGTTTATCACAGG+AGG | - | chr1_1:4976308-4976327 | None:intergenic | 35.0% | |
| ATTTAAGGATTCCTTAACCG+GGG | + | chr1_1:4976583-4976602 | Msa0002770:intron | 35.0% | |
| ! | ACAATTTCACAATTTTCCCC+CGG | - | chr1_1:4976603-4976622 | None:intergenic | 35.0% |
| GCTTACTATTGTAAGTAGCA+TGG | + | chr1_1:4976792-4976811 | Msa0002770:intron | 35.0% | |
| GAACTTCTCTATGATTGTTG+TGG | + | chr1_1:4976872-4976891 | Msa0002770:intron | 35.0% | |
| ! | AATTCGGCCTTTGAAAATTG+TGG | + | chr1_1:4977056-4977075 | Msa0002770:three_prime_UTR | 35.0% |
| GTCATAAGAATCAGACTTCA+GGG | + | chr1_1:4977078-4977097 | Msa0002770:three_prime_UTR | 35.0% | |
| !!! | ATGCGAGTTTTGATTATGCT+TGG | + | chr1_1:4977225-4977244 | Msa0002770:three_prime_UTR | 35.0% |
| ! | TGAGTTTGTATCTAGAGTCG+CGG | - | chr1_1:4964668-4964687 | None:intergenic | 40.0% |
| AAGAAACAGGGTAGAGTGTA+TGG | - | chr1_1:4964696-4964715 | None:intergenic | 40.0% | |
| AAGGGTTAGGGATTGAATAG+TGG | - | chr1_1:4964794-4964813 | None:intergenic | 40.0% | |
| TTGAAGTAGAAGCGAATTGG+GGG | - | chr1_1:4964820-4964839 | None:intergenic | 40.0% | |
| CTTGAAGTAGAAGCGAATTG+GGG | - | chr1_1:4964821-4964840 | None:intergenic | 40.0% | |
| CCTTGAAGTAGAAGCGAATT+GGG | - | chr1_1:4964822-4964841 | None:intergenic | 40.0% | |
| ACCTTGAAGTAGAAGCGAAT+TGG | - | chr1_1:4964823-4964842 | None:intergenic | 40.0% | |
| ! | TGTGAGAAAGTGTAGCTGAT+AGG | + | chr1_1:4965374-4965393 | Msa0002770:intron | 40.0% |
| CACTACATTGCAAAAGCTGT+AGG | - | chr1_1:4965548-4965567 | None:intergenic | 40.0% | |
| TGCTCATGCACAAAAAAGGA+GGG | + | chr1_1:4965893-4965912 | Msa0002770:intron | 40.0% | |
| GAGTTCCTAATTGAAGGAAC+TGG | + | chr1_1:4965930-4965949 | Msa0002770:intron | 40.0% | |
| TCTACCTAGGAATCAAACTC+GGG | - | chr1_1:4966019-4966038 | None:intergenic | 40.0% | |
| TTCCTAGGTAGAACAATTCC+TGG | + | chr1_1:4966027-4966046 | Msa0002770:intron | 40.0% | |
| GAGGTAAGTAAGGTAAAGTC+TGG | - | chr1_1:4966053-4966072 | None:intergenic | 40.0% | |
| ACTTTACCTTACTTACCTCC+TGG | + | chr1_1:4966054-4966073 | Msa0002770:intron | 40.0% | |
| GACCATAGTAATCCAGAGTT+AGG | - | chr1_1:4966080-4966099 | None:intergenic | 40.0% | |
| AATGGATAGGCCAGATTTGT+TGG | + | chr1_1:4966137-4966156 | Msa0002770:intron | 40.0% | |
| ! | ATGGATAGGCCAGATTTGTT+GGG | + | chr1_1:4966138-4966157 | Msa0002770:intron | 40.0% |
| CACCACAGTAGATGATATCA+CGG | - | chr1_1:4966265-4966284 | None:intergenic | 40.0% | |
| CATCTACTGTGGTGATAAGT+TGG | + | chr1_1:4966271-4966290 | Msa0002770:intron | 40.0% | |
| GGATAGACATTAGACAGACA+TGG | - | chr1_1:4966423-4966442 | None:intergenic | 40.0% | |
| GTCTGTCTAATGTCTATCCA+CGG | + | chr1_1:4966424-4966443 | Msa0002770:intron | 40.0% | |
| TCTGTCTAATGTCTATCCAC+GGG | + | chr1_1:4966425-4966444 | Msa0002770:intron | 40.0% | |
| ATTGAATAGGAGTTCCATCC+TGG | + | chr1_1:4966589-4966608 | Msa0002770:intron | 40.0% | |
| ! | AATGGACTTTGCCTACATGT+TGG | + | chr1_1:4966615-4966634 | Msa0002770:intron | 40.0% |
| ACTTCAACTGTCCAACATGT+AGG | - | chr1_1:4966629-4966648 | None:intergenic | 40.0% | |
| GGTCAGATGAATGATGATCT+TGG | + | chr1_1:4966682-4966701 | Msa0002770:intron | 40.0% | |
| !!! | TTACTTTTTCCACCAGGACA+CGG | - | chr1_1:4966946-4966965 | None:intergenic | 40.0% |
| TTGTAGTGTATTGTGTGGTC+TGG | + | chr1_1:4967006-4967025 | Msa0002770:intron | 40.0% | |
| TATTGTGTGGTCTGGAGAAT+GGG | + | chr1_1:4967014-4967033 | Msa0002770:exon | 40.0% | |
| ! | TTCCAGTGCTGTTATTGCTA+GGG | - | chr1_1:4967061-4967080 | None:intergenic | 40.0% |
| ! | CCAAGTCTTATCTCACTAGA+TGG | - | chr1_1:4967417-4967436 | None:intergenic | 40.0% |
| CCATCTAGTGAGATAAGACT+TGG | + | chr1_1:4967414-4967433 | Msa0002770:intron | 40.0% | |
| CAATAAAGAGAGAACAGGAG+AGG | - | chr1_1:4967753-4967772 | None:intergenic | 40.0% | |
| CCCATCAATAAAGAGAGAAC+AGG | - | chr1_1:4967758-4967777 | None:intergenic | 40.0% | |
| !!! | AAGGCTTTTGAGATAGGTTG+TGG | - | chr1_1:4967800-4967819 | None:intergenic | 40.0% |
| TTTACAAGTCGAGTCTATGG+AGG | - | chr1_1:4967904-4967923 | None:intergenic | 40.0% | |
| GAGTTTACAAGTCGAGTCTA+TGG | - | chr1_1:4967907-4967926 | None:intergenic | 40.0% | |
| GAGAAAACAAAGTCGTATCC+AGG | + | chr1_1:4968202-4968221 | Msa0002770:intron | 40.0% | |
| TGAGAGACAAATCTTATGCC+TGG | - | chr1_1:4968223-4968242 | None:intergenic | 40.0% | |
| ATCAGCTATGGAAAGCTCAA+TGG | - | chr1_1:4968525-4968544 | None:intergenic | 40.0% | |
| TACTTAACACAGCAGCTTTG+AGG | - | chr1_1:4968686-4968705 | None:intergenic | 40.0% | |
| GGGAAATGATTGAATGATGC+CGG | - | chr1_1:4968723-4968742 | None:intergenic | 40.0% | |
| GCAATCTGTTCTTTCAAAGC+AGG | - | chr1_1:4968766-4968785 | None:intergenic | 40.0% | |
| GAACAGATTGCTACTGTAAC+TGG | + | chr1_1:4968775-4968794 | Msa0002770:CDS | 40.0% | |
| ! | TTGCCAAGGGAAAGTTCTAA+AGG | + | chr1_1:4968825-4968844 | Msa0002770:CDS | 40.0% |
| !! | CATCCTTTAGAACTTTCCCT+TGG | - | chr1_1:4968831-4968850 | None:intergenic | 40.0% |
| ! | GAGGTAGAAAGGTACATCAA+AGG | + | chr1_1:4969214-4969233 | Msa0002770:intron | 40.0% |
| TCACTCATGTTTGCGAATGA+TGG | + | chr1_1:4969427-4969446 | Msa0002770:intron | 40.0% | |
| AGAATAGCGACAGAACATCT+AGG | - | chr1_1:4969510-4969529 | None:intergenic | 40.0% | |
| TGCATCAAACCTGCATGATT+GGG | - | chr1_1:4969664-4969683 | None:intergenic | 40.0% | |
| TTGCATCAAACCTGCATGAT+TGG | - | chr1_1:4969665-4969684 | None:intergenic | 40.0% | |
| TGCTGAAGTCTTCATTATCG+AGG | + | chr1_1:4969825-4969844 | Msa0002770:intron | 40.0% | |
| GCTGAAGTCTTCATTATCGA+GGG | + | chr1_1:4969826-4969845 | Msa0002770:intron | 40.0% | |
| AAATAGCAGCCTAACCTTTC+TGG | + | chr1_1:4969856-4969875 | Msa0002770:intron | 40.0% | |
| !! | ACCCTTTTAGAAGACCAGAA+AGG | - | chr1_1:4969873-4969892 | None:intergenic | 40.0% |
| CTCCATATAAAACATCCTGG+TGG | + | chr1_1:4969925-4969944 | Msa0002770:intron | 40.0% | |
| ! | CTCCACCAGGATGTTTTATA+TGG | - | chr1_1:4969930-4969949 | None:intergenic | 40.0% |
| AACTTGAAGCTTCCCCAATT+TGG | + | chr1_1:4970146-4970165 | Msa0002770:intron | 40.0% | |
| ACAAAACCTAGGCCAAATTG+GGG | - | chr1_1:4970161-4970180 | None:intergenic | 40.0% | |
| CACAAAACCTAGGCCAAATT+GGG | - | chr1_1:4970162-4970181 | None:intergenic | 40.0% | |
| TCACAAAACCTAGGCCAAAT+TGG | - | chr1_1:4970163-4970182 | None:intergenic | 40.0% | |
| ! | CTAAGTGTTTTGCCCTAAAC+AGG | - | chr1_1:4970302-4970321 | None:intergenic | 40.0% |
| ! | CTGTTTAGGGCAAAACACTT+AGG | + | chr1_1:4970300-4970319 | Msa0002770:intron | 40.0% |
| ! | TGTAACGGAAATTTGAAGCC+TGG | + | chr1_1:4970415-4970434 | Msa0002770:intron | 40.0% |
| ! | GAAGATCGACTCTACAAATC+TGG | + | chr1_1:4970617-4970636 | Msa0002770:intron | 40.0% |
| TGACCTAATCTTTCATGGAG+CGG | + | chr1_1:4970674-4970693 | Msa0002770:intron | 40.0% | |
| CTGTTGTCAATGCGAAAATG+CGG | - | chr1_1:4971338-4971357 | None:intergenic | 40.0% | |
| AAATAGAGGAACACGTTCAG+TGG | - | chr1_1:4971405-4971424 | None:intergenic | 40.0% | |
| GCCTCTGTACTCATGAATTA+TGG | + | chr1_1:4971492-4971511 | Msa0002770:intron | 40.0% | |
| ! | TTTTCAGTTGTTCTGCATGG+AGG | - | chr1_1:4971697-4971716 | None:intergenic | 40.0% |
| ! | CTATGGCTTGTGCTTGAATT+TGG | - | chr1_1:4971782-4971801 | None:intergenic | 40.0% |
| !!! | CAGATTGTGTCTGCTGTTTT+AGG | + | chr1_1:4971970-4971989 | Msa0002770:intron | 40.0% |
| AGAAAAAGAGAGACAGTGTG+AGG | + | chr1_1:4972166-4972185 | Msa0002770:intron | 40.0% | |
| TTGGAAATGACGATAGAAGC+TGG | + | chr1_1:4972191-4972210 | Msa0002770:intron | 40.0% | |
| AATGAACTGCTGACCTCTAA+TGG | + | chr1_1:4972258-4972277 | Msa0002770:intron | 40.0% | |
| ! | AGAGGGAAGCTTGACATTTT+GGG | - | chr1_1:4972294-4972313 | None:intergenic | 40.0% |
| ! | GTTTGCTAGAGTCAACTAGT+GGG | - | chr1_1:4972365-4972384 | None:intergenic | 40.0% |
| !! | AGTTTGCTAGAGTCAACTAG+TGG | - | chr1_1:4972366-4972385 | None:intergenic | 40.0% |
| ! | CTAGTTGACTCTAGCAAACT+TGG | + | chr1_1:4972366-4972385 | Msa0002770:intron | 40.0% |
| AAGCACAAGATGTGCACAAT+GGG | - | chr1_1:4972436-4972455 | None:intergenic | 40.0% | |
| GAACCAGTTTGATCAAGTAG+GGG | - | chr1_1:4973070-4973089 | None:intergenic | 40.0% | |
| GTGAACCAGTTTGATCAAGT+AGG | - | chr1_1:4973072-4973091 | None:intergenic | 40.0% | |
| ! | ACGGAATACTTTTGGACTTC+CGG | + | chr1_1:4973111-4973130 | Msa0002770:CDS | 40.0% |
| AACTTTGTGCATCTTACAGG+AGG | - | chr1_1:4973163-4973182 | None:intergenic | 40.0% | |
| AGGAACTTTGTGCATCTTAC+AGG | - | chr1_1:4973166-4973185 | None:intergenic | 40.0% | |
| GACAAAGTTGTCAAAGAACC+AGG | - | chr1_1:4973295-4973314 | None:intergenic | 40.0% | |
| GACTCATATGACTTAGGTAC+TGG | - | chr1_1:4973318-4973337 | None:intergenic | 40.0% | |
| TTTACTTGCAGTCAGAGAAG+GGG | + | chr1_1:4973441-4973460 | Msa0002770:CDS | 40.0% | |
| GGCTCATAGTAATGAAGCAA+TGG | + | chr1_1:4973483-4973502 | Msa0002770:CDS | 40.0% | |
| AGTAATGAAGCAATGGGATC+TGG | + | chr1_1:4973490-4973509 | Msa0002770:CDS | 40.0% | |
| CAAATGATCATCGAACAAGC+TGG | + | chr1_1:4973589-4973608 | Msa0002770:CDS | 40.0% | |
| AATGATCATCGAACAAGCTG+GGG | + | chr1_1:4973591-4973610 | Msa0002770:CDS | 40.0% | |
| AGAAAATAAAGGAGAGGGAG+GGG | - | chr1_1:4973700-4973719 | None:intergenic | 40.0% | |
| CAGAAAATAAAGGAGAGGGA+GGG | - | chr1_1:4973701-4973720 | None:intergenic | 40.0% | |
| TACAACCATGACATTGCGTT+TGG | + | chr1_1:4973939-4973958 | Msa0002770:CDS | 40.0% | |
| ACAACCATGACATTGCGTTT+GGG | + | chr1_1:4973940-4973959 | Msa0002770:CDS | 40.0% | |
| ! | CAGTCTGAAGCTGTAGTTAA+TGG | + | chr1_1:4974052-4974071 | Msa0002770:intron | 40.0% |
| ! | TCTGAAGCTGTAGTTAATGG+TGG | + | chr1_1:4974055-4974074 | Msa0002770:CDS | 40.0% |
| GTAGGCGATATAAAAACTGC+AGG | - | chr1_1:4974082-4974101 | None:intergenic | 40.0% | |
| ! | GCAGTTTTTATATCGCCTAC+TGG | + | chr1_1:4974082-4974101 | Msa0002770:CDS | 40.0% |
| TTTCATGACAAGCAAGGCAT+AGG | - | chr1_1:4974143-4974162 | None:intergenic | 40.0% | |
| ! | ACTGACTCAAGTTTAGGTAG+TGG | + | chr1_1:4974258-4974277 | Msa0002770:CDS | 40.0% |
| !! | TCAAGTTTAGGTAGTGGACT+TGG | + | chr1_1:4974264-4974283 | Msa0002770:CDS | 40.0% |
| TCTGTATATCGATACGCCTT+GGG | - | chr1_1:4974302-4974321 | None:intergenic | 40.0% | |
| ATCTGTATATCGATACGCCT+TGG | - | chr1_1:4974303-4974322 | None:intergenic | 40.0% | |
| TGACTAGCAGAACTTTCAAC+TGG | - | chr1_1:4974492-4974511 | None:intergenic | 40.0% | |
| ! | TTGCTGGAGAATCTGGAATA+AGG | + | chr1_1:4974541-4974560 | Msa0002770:CDS | 40.0% |
| GAACCATCTGGTAATTCTAC+TGG | + | chr1_1:4974624-4974643 | Msa0002770:intron | 40.0% | |
| ACGTTGAAATCTCCCAAGAA+CGG | - | chr1_1:4974661-4974680 | None:intergenic | 40.0% | |
| CAACGGTGTGAAACGTTAAA+TGG | - | chr1_1:4974820-4974839 | None:intergenic | 40.0% | |
| ATTTGTGACTGGACTTCTGT+AGG | + | chr1_1:4975260-4975279 | Msa0002770:intron | 40.0% | |
| !! | TCTTGTGTTTGGAGTTGATG+AGG | - | chr1_1:4975288-4975307 | None:intergenic | 40.0% |
| TATTTCTCCAGTGGGAAAGA+GGG | - | chr1_1:4975426-4975445 | None:intergenic | 40.0% | |
| TCCACATGTATTTCTCCAGT+GGG | - | chr1_1:4975434-4975453 | None:intergenic | 40.0% | |
| AATGCATGCTGCAACATCAA+GGG | + | chr1_1:4975493-4975512 | Msa0002770:CDS | 40.0% | |
| CCGGTCATATCTCAACAAAT+AGG | + | chr1_1:4975596-4975615 | Msa0002770:CDS | 40.0% | |
| ATAATGAAGCATGCCAACCT+GGG | - | chr1_1:4975669-4975688 | None:intergenic | 40.0% | |
| AATAATGAAGCATGCCAACC+TGG | - | chr1_1:4975670-4975689 | None:intergenic | 40.0% | |
| AACATCCCACTAGTTGAAGT+TGG | + | chr1_1:4975796-4975815 | Msa0002770:intron | 40.0% | |
| ACATCCCACTAGTTGAAGTT+GGG | + | chr1_1:4975797-4975816 | Msa0002770:intron | 40.0% | |
| AGTTCCCAACTTCAACTAGT+GGG | - | chr1_1:4975804-4975823 | None:intergenic | 40.0% | |
| TATACATGTTCAGCAACCTG+GGG | - | chr1_1:4975872-4975891 | None:intergenic | 40.0% | |
| ACAAATAGGCGAAATTGTGC+AGG | + | chr1_1:4975906-4975925 | Msa0002770:intron | 40.0% | |
| !!! | TCTTTAGCTTTTTCCTGCCA+TGG | + | chr1_1:4975945-4975964 | Msa0002770:intron | 40.0% |
| ! | ATTTTCACAACTACCATGGC+AGG | - | chr1_1:4975961-4975980 | None:intergenic | 40.0% |
| !! | AGACATAGTGGTTCTGAATC+AGG | + | chr1_1:4976072-4976091 | Msa0002770:CDS | 40.0% |
| ACGACTAGAGTCCTTTATCA+TGG | + | chr1_1:4976214-4976233 | Msa0002770:intron | 40.0% | |
| CGACTAGAGTCCTTTATCAT+GGG | + | chr1_1:4976215-4976234 | Msa0002770:intron | 40.0% | |
| TTTGCTTAACCAATGCCTCT+GGG | - | chr1_1:4976483-4976502 | None:intergenic | 40.0% | |
| TTTAAGGATTCCTTAACCGG+GGG | + | chr1_1:4976584-4976603 | Msa0002770:intron | 40.0% | |
| GGGGGAAAATTGTGAAATTG+TGG | + | chr1_1:4976602-4976621 | Msa0002770:intron | 40.0% | |
| TTTCTTGTGTGGGTCAGTAA+TGG | + | chr1_1:4976841-4976860 | Msa0002770:intron | 40.0% | |
| TTCTTGTGTGGGTCAGTAAT+GGG | + | chr1_1:4976842-4976861 | Msa0002770:intron | 40.0% | |
| ! | TTGTTGCTTCTTGATGCAGA+TGG | + | chr1_1:4977018-4977037 | Msa0002770:intron | 40.0% |
| GGTCATAAGAATCAGACTTC+AGG | + | chr1_1:4977077-4977096 | Msa0002770:three_prime_UTR | 40.0% | |
| ATAAGAATCAGACTTCAGGG+TGG | + | chr1_1:4977081-4977100 | Msa0002770:three_prime_UTR | 40.0% | |
| ! | GGGATTGAATAGTGGAGAGT+GGG | - | chr1_1:4964786-4964805 | None:intergenic | 45.0% |
| ! | AGGGATTGAATAGTGGAGAG+TGG | - | chr1_1:4964787-4964806 | None:intergenic | 45.0% |
| AATTGGGGGAAGAAGGGTTA+GGG | - | chr1_1:4964806-4964825 | None:intergenic | 45.0% | |
| CCCAATTCGCTTCTACTTCA+AGG | + | chr1_1:4964819-4964838 | Msa0002770:five_prime_UTR | 45.0% | |
| !!! | ATGTGCACTTTTTTGGGGTC+AGG | + | chr1_1:4965519-4965538 | Msa0002770:intron | 45.0% |
| GTGCTCATGCACAAAAAAGG+AGG | + | chr1_1:4965892-4965911 | Msa0002770:intron | 45.0% | |
| GGAACTGGATACAGTGTGAT+TGG | + | chr1_1:4965945-4965964 | Msa0002770:intron | 45.0% | |
| CTCCCTAATGATTCAGCCTT+AGG | - | chr1_1:4965994-4966013 | None:intergenic | 45.0% | |
| AGAACCCGAGTTTGATTCCT+AGG | + | chr1_1:4966012-4966031 | Msa0002770:intron | 45.0% | |
| AAGTAAGGTAAAGTCTGGCC+AGG | - | chr1_1:4966048-4966067 | None:intergenic | 45.0% | |
| TAGTAATCCAGAGTTAGGCC+AGG | - | chr1_1:4966075-4966094 | None:intergenic | 45.0% | |
| GGCCTAACTCTGGATTACTA+TGG | + | chr1_1:4966075-4966094 | Msa0002770:intron | 45.0% | |
| !! | CCTTCTAGTTTCTAGGGGAA+TGG | - | chr1_1:4966102-4966121 | None:intergenic | 45.0% |
| CCATTCCCCTAGAAACTAGA+AGG | + | chr1_1:4966099-4966118 | Msa0002770:intron | 45.0% | |
| TGCCGTGATATCATCTACTG+TGG | + | chr1_1:4966260-4966279 | Msa0002770:intron | 45.0% | |
| ACATTAGACAGACATGGCAG+AGG | - | chr1_1:4966417-4966436 | None:intergenic | 45.0% | |
| ACTTGCATTTCCAACCTGTC+AGG | + | chr1_1:4966457-4966476 | Msa0002770:intron | 45.0% | |
| CTTGCATTTCCAACCTGTCA+GGG | + | chr1_1:4966458-4966477 | Msa0002770:intron | 45.0% | |
| TGCAACACAACTCCCATCTA+TGG | + | chr1_1:4966517-4966536 | Msa0002770:intron | 45.0% | |
| !! | CTGGTAAGAGCACCATAGAT+GGG | - | chr1_1:4966532-4966551 | None:intergenic | 45.0% |
| CAAAGTCCATTCTTCCAGGA+TGG | - | chr1_1:4966606-4966625 | None:intergenic | 45.0% | |
| TAGGCAAAGTCCATTCTTCC+AGG | - | chr1_1:4966610-4966629 | None:intergenic | 45.0% | |
| TCCATAATAATCCCGTGTCC+TGG | + | chr1_1:4966931-4966950 | Msa0002770:intron | 45.0% | |
| ACCAGGACACGGGATTATTA+TGG | - | chr1_1:4966935-4966954 | None:intergenic | 45.0% | |
| ATAATAATCCCGTGTCCTGG+TGG | + | chr1_1:4966934-4966953 | Msa0002770:intron | 45.0% | |
| !!! | TACTTTTTCCACCAGGACAC+GGG | - | chr1_1:4966945-4966964 | None:intergenic | 45.0% |
| GTATTGTGTGGTCTGGAGAA+TGG | + | chr1_1:4967013-4967032 | Msa0002770:exon | 45.0% | |
| ATCCCTAGCAATAACAGCAC+TGG | + | chr1_1:4967056-4967075 | Msa0002770:CDS | 45.0% | |
| ! | CTTCCAGTGCTGTTATTGCT+AGG | - | chr1_1:4967062-4967081 | None:intergenic | 45.0% |
| CTTATCTCACTAGATGGGGT+CGG | - | chr1_1:4967411-4967430 | None:intergenic | 45.0% | |
| ! | GCTGACCATTGCACACTTTT+TGG | + | chr1_1:4967719-4967738 | Msa0002770:intron | 45.0% |
| GATAAGGACATAGCCACAAG+CGG | - | chr1_1:4968454-4968473 | None:intergenic | 45.0% | |
| TGTTCTTTCAAAGCAGGGAC+TGG | - | chr1_1:4968760-4968779 | None:intergenic | 45.0% | |
| !! | AGCAGCGCTTAATTTGCCAA+GGG | + | chr1_1:4968812-4968831 | Msa0002770:CDS | 45.0% |
| CTTCACAAAGAAGGCCTATG+TGG | + | chr1_1:4968902-4968921 | Msa0002770:intron | 45.0% | |
| CTGCAAAGAGAAAGCCACAT+AGG | - | chr1_1:4968919-4968938 | None:intergenic | 45.0% | |
| TGTATGAAGGGAACACCTTC+AGG | - | chr1_1:4969032-4969051 | None:intergenic | 45.0% | |
| CAACCTGCTAGACAAACAAC+GGG | - | chr1_1:4969080-4969099 | None:intergenic | 45.0% | |
| GCAACCTGCTAGACAAACAA+CGG | - | chr1_1:4969081-4969100 | None:intergenic | 45.0% | |
| TTGCGCCTTACTGTAACATC+TGG | + | chr1_1:4969149-4969168 | Msa0002770:intron | 45.0% | |
| GCAATTCACATTTCTCCACC+AGG | - | chr1_1:4969943-4969962 | None:intergenic | 45.0% | |
| AATGCTAAAGGGTTTGGGTC+TGG | + | chr1_1:4970204-4970223 | Msa0002770:intron | 45.0% | |
| GCGATGATACACCCTGTTTA+GGG | + | chr1_1:4970287-4970306 | Msa0002770:intron | 45.0% | |
| CCATCCTCTGTTGTCAATAG+CGG | + | chr1_1:4970369-4970388 | Msa0002770:intron | 45.0% | |
| GACCTAATCTTTCATGGAGC+GGG | + | chr1_1:4970675-4970694 | Msa0002770:intron | 45.0% | |
| AACCCGCTCCATGAAAGATT+AGG | - | chr1_1:4970680-4970699 | None:intergenic | 45.0% | |
| ! | TCCCACACCACGTCTATTTT+TGG | + | chr1_1:4971302-4971321 | Msa0002770:intron | 45.0% |
| CCCAAAAATAGACGTGGTGT+GGG | - | chr1_1:4971306-4971325 | None:intergenic | 45.0% | |
| !! | CCCACACCACGTCTATTTTT+GGG | + | chr1_1:4971303-4971322 | Msa0002770:intron | 45.0% |
| ACCCAAAAATAGACGTGGTG+TGG | - | chr1_1:4971307-4971326 | None:intergenic | 45.0% | |
| !!! | CACCACGTCTATTTTTGGGT+TGG | + | chr1_1:4971307-4971326 | Msa0002770:intron | 45.0% |
| AGGAACTCGCAAAGTAACGA+TGG | - | chr1_1:4971366-4971385 | None:intergenic | 45.0% | |
| CCCAACAACGAATCTTCTCT+GGG | - | chr1_1:4971653-4971672 | None:intergenic | 45.0% | |
| CCCAGAGAAGATTCGTTGTT+GGG | + | chr1_1:4971650-4971669 | Msa0002770:intron | 45.0% | |
| ! | CGACTTGAGTACTGTGACTA+TGG | - | chr1_1:4971799-4971818 | None:intergenic | 45.0% |
| AAGAGAAAGTCGCACACTTG+TGG | + | chr1_1:4971906-4971925 | Msa0002770:intron | 45.0% | |
| AGAGAAAGTCGCACACTTGT+GGG | + | chr1_1:4971907-4971926 | Msa0002770:intron | 45.0% | |
| TGGTGAAGGGAATGTTGTCA+GGG | + | chr1_1:4972026-4972045 | Msa0002770:CDS | 45.0% | |
| AAGGGAATGTTGTCAGGGTA+AGG | + | chr1_1:4972031-4972050 | Msa0002770:intron | 45.0% | |
| ! | GAGCAGGACTCTCTTGTTTA+TGG | + | chr1_1:4972235-4972254 | Msa0002770:intron | 45.0% |
| !!! | GGGAGGTTTTAGACCATTAG+AGG | - | chr1_1:4972274-4972293 | None:intergenic | 45.0% |
| ! | GAGAGGGAAGCTTGACATTT+TGG | - | chr1_1:4972295-4972314 | None:intergenic | 45.0% |
| CAAGCACAAGATGTGCACAA+TGG | - | chr1_1:4972437-4972456 | None:intergenic | 45.0% | |
| TACTAGAGCAAAAATGGGGG+AGG | + | chr1_1:4972561-4972580 | Msa0002770:intron | 45.0% | |
| ACTAGAGCAAAAATGGGGGA+GGG | + | chr1_1:4972562-4972581 | Msa0002770:intron | 45.0% | |
| ATGAATCTCAGAACTGTGGG+AGG | + | chr1_1:4972601-4972620 | Msa0002770:intron | 45.0% | |
| GGCATGCCACCTATATTTGA+GGG | - | chr1_1:4972787-4972806 | None:intergenic | 45.0% | |
| AGGCATGCCACCTATATTTG+AGG | - | chr1_1:4972788-4972807 | None:intergenic | 45.0% | |
| ! | GGCTGTAATTGGTCTGATGA+AGG | + | chr1_1:4972982-4973001 | Msa0002770:intron | 45.0% |
| ! | ATGAAGGAGCATGATTCCCA+AGG | + | chr1_1:4972998-4973017 | Msa0002770:intron | 45.0% |
| TGGAATCCGAAGTTCTTCCA+AGG | - | chr1_1:4973024-4973043 | None:intergenic | 45.0% | |
| CAGTTTGATCAAGTAGGGGA+CGG | - | chr1_1:4973066-4973085 | None:intergenic | 45.0% | |
| ! | ATATTTGAGATCCCCCTGAG+TGG | + | chr1_1:4973223-4973242 | Msa0002770:intron | 45.0% |
| TTACTTGCAGTCAGAGAAGG+GGG | + | chr1_1:4973442-4973461 | Msa0002770:CDS | 45.0% | |
| !! | GGATCTGGTTCTTCACGTTT+GGG | + | chr1_1:4973505-4973524 | Msa0002770:CDS | 45.0% |
| AGAAAGCAAGACTTCTGCCA+AGG | - | chr1_1:4973563-4973582 | None:intergenic | 45.0% | |
| AAAATAAAGGAGAGGGAGGG+GGG | - | chr1_1:4973698-4973717 | None:intergenic | 45.0% | |
| GAAAATAAAGGAGAGGGAGG+GGG | - | chr1_1:4973699-4973718 | None:intergenic | 45.0% | |
| GCAGAAAATAAAGGAGAGGG+AGG | - | chr1_1:4973702-4973721 | None:intergenic | 45.0% | |
| CACGCCCAATTACTTGAGAA+AGG | - | chr1_1:4973728-4973747 | None:intergenic | 45.0% | |
| TGGCATACTTCTACAGCAAC+TGG | + | chr1_1:4973792-4973811 | Msa0002770:intron | 45.0% | |
| ATTGAGTGGTTGATCGCAAG+GGG | - | chr1_1:4973855-4973874 | None:intergenic | 45.0% | |
| GATTGAGTGGTTGATCGCAA+GGG | - | chr1_1:4973856-4973875 | None:intergenic | 45.0% | |
| AGATTGAGTGGTTGATCGCA+AGG | - | chr1_1:4973857-4973876 | None:intergenic | 45.0% | |
| TGCGATCAACCACTCAATCT+AGG | + | chr1_1:4973857-4973876 | Msa0002770:CDS | 45.0% | |
| GCGATCAACCACTCAATCTA+GGG | + | chr1_1:4973858-4973877 | Msa0002770:CDS | 45.0% | |
| GCTCGAGTAAAAATGCACCA+AGG | - | chr1_1:4973912-4973931 | None:intergenic | 45.0% | |
| ! | GGTGCATTTTTACTCGAGCT+TGG | + | chr1_1:4973913-4973932 | Msa0002770:CDS | 45.0% |
| TTGACCCAAACGCAATGTCA+TGG | - | chr1_1:4973947-4973966 | None:intergenic | 45.0% | |
| ATTGCGTTTGGGTCAAACAC+CGG | + | chr1_1:4973951-4973970 | Msa0002770:CDS | 45.0% | |
| ACTACAGCTTCAGACTGCAT+AGG | - | chr1_1:4974049-4974068 | None:intergenic | 45.0% | |
| ! | AAGCTTGCTCCAGCTTGAAA+AGG | - | chr1_1:4974210-4974229 | None:intergenic | 45.0% |
| TTTCAAGCTGGAGCAAGCTT+TGG | + | chr1_1:4974210-4974229 | Msa0002770:CDS | 45.0% | |
| ! | GCACAGACTGACTCAAGTTT+AGG | + | chr1_1:4974252-4974271 | Msa0002770:CDS | 45.0% |
| ! | TTGGCTCAAGTCTTTTCCCA+AGG | + | chr1_1:4974283-4974302 | Msa0002770:CDS | 45.0% |
| TCTCCAGCAATAGATGCATC+CGG | - | chr1_1:4974531-4974550 | None:intergenic | 45.0% | |
| GCATCTATTGCTGGAGAATC+TGG | + | chr1_1:4974534-4974553 | Msa0002770:CDS | 45.0% | |
| !! | GATAGTGCCGATTAGAACCA+TGG | + | chr1_1:4974563-4974582 | Msa0002770:CDS | 45.0% |
| !! | GCTGCAACCATGGTTCTAAT+CGG | - | chr1_1:4974573-4974592 | None:intergenic | 45.0% |
| AGCCCAGTAGAATTACCAGA+TGG | - | chr1_1:4974630-4974649 | None:intergenic | 45.0% | |
| CGTTGAAATCTCCCAAGAAC+GGG | - | chr1_1:4974660-4974679 | None:intergenic | 45.0% | |
| CTCCTGAATCCACATTGCAA+AGG | + | chr1_1:4974754-4974773 | Msa0002770:CDS | 45.0% | |
| TGCCTTTGCAATGTGGATTC+AGG | - | chr1_1:4974759-4974778 | None:intergenic | 45.0% | |
| CACATTGCAAAGGCAAAGCA+CGG | + | chr1_1:4974764-4974783 | Msa0002770:CDS | 45.0% | |
| GCGGGTTCTTATTGAAGATG+TGG | + | chr1_1:4974988-4975007 | Msa0002770:intron | 45.0% | |
| GATGGCTCTTGTCTTGTGTT+TGG | - | chr1_1:4975299-4975318 | None:intergenic | 45.0% | |
| ATCAATATTCTGGCAGCTGG+TGG | + | chr1_1:4975338-4975357 | Msa0002770:CDS | 45.0% | |
| TCAATATTCTGGCAGCTGGT+GGG | + | chr1_1:4975339-4975358 | Msa0002770:CDS | 45.0% | |
| TTAAGAACCCTCTTTCCCAC+TGG | + | chr1_1:4975416-4975435 | Msa0002770:intron | 45.0% | |
| GTATTTCTCCAGTGGGAAAG+AGG | - | chr1_1:4975427-4975446 | None:intergenic | 45.0% | |
| TCCCACTGGAGAAATACATG+TGG | + | chr1_1:4975430-4975449 | Msa0002770:intron | 45.0% | |
| CTCCACATGTATTTCTCCAG+TGG | - | chr1_1:4975435-4975454 | None:intergenic | 45.0% | |
| CACTGGAGAAATACATGTGG+AGG | + | chr1_1:4975433-4975452 | Msa0002770:intron | 45.0% | |
| GTGGAGGATTCAAGCTTACA+AGG | + | chr1_1:4975449-4975468 | Msa0002770:CDS | 45.0% | |
| TGATGTTGCAGCATGCATTG+AGG | - | chr1_1:4975492-4975511 | None:intergenic | 45.0% | |
| CAATGCATGCTGCAACATCA+AGG | + | chr1_1:4975492-4975511 | Msa0002770:CDS | 45.0% | |
| ATGCATGCTGCAACATCAAG+GGG | + | chr1_1:4975494-4975513 | Msa0002770:CDS | 45.0% | |
| TAACAGCAGGTTCAGCTTCA+GGG | - | chr1_1:4975532-4975551 | None:intergenic | 45.0% | |
| ATATGACCGGCATGATCTCA+CGG | - | chr1_1:4975586-4975605 | None:intergenic | 45.0% | |
| CAAGATTCATCAACCCAGGT+TGG | + | chr1_1:4975653-4975672 | Msa0002770:intron | 45.0% | |
| !! | GAATTCTGAAGTTCTACGGG+TGG | - | chr1_1:4975762-4975781 | None:intergenic | 45.0% |
| GAGTTCCCAACTTCAACTAG+TGG | - | chr1_1:4975805-4975824 | None:intergenic | 45.0% | |
| TCCTTGGTTCAAACACCACT+AGG | + | chr1_1:4975836-4975855 | Msa0002770:intron | 45.0% | |
| ACCTAGTGGTGTTTGAACCA+AGG | - | chr1_1:4975840-4975859 | None:intergenic | 45.0% | |
| ATACATGTTCAGCAACCTGG+GGG | - | chr1_1:4975871-4975890 | None:intergenic | 45.0% | |
| AATAGGCGAAATTGTGCAGG+AGG | + | chr1_1:4975909-4975928 | Msa0002770:intron | 45.0% | |
| TCCAGATCCAAAACGCCAAA+AGG | + | chr1_1:4976098-4976117 | Msa0002770:CDS | 45.0% | |
| !! | ACCTTTTGGCGTTTTGGATC+TGG | - | chr1_1:4976102-4976121 | None:intergenic | 45.0% |
| ! | AGGGTAACCTTTTGGCGTTT+TGG | - | chr1_1:4976108-4976127 | None:intergenic | 45.0% |
| TTGCTTAACCAATGCCTCTG+GGG | - | chr1_1:4976482-4976501 | None:intergenic | 45.0% | |
| GTTTGCTTAACCAATGCCTC+TGG | - | chr1_1:4976484-4976503 | None:intergenic | 45.0% | |
| ! | TCACAATTTTCCCCCGGTTA+AGG | - | chr1_1:4976597-4976616 | None:intergenic | 45.0% |
| !! | GGGAAAAGAAAGTGCCATCA+TGG | - | chr1_1:4976912-4976931 | None:intergenic | 45.0% |
| !!! | TTTATTTTTATTTTTGAATT+TGG | + | chr1_1:4965210-4965229 | Msa0002770:intron | 5.0% |
| !! | AAAAAAAAAAAAAAAACATA+AGG | - | chr1_1:4965629-4965648 | None:intergenic | 5.0% |
| !!! | AAATATTTATTATTTTCAAA+TGG | + | chr1_1:4968981-4969000 | Msa0002770:intron | 5.0% |
| !! | TTTATTATTGAAAAAATAAA+AGG | - | chr1_1:4970809-4970828 | None:intergenic | 5.0% |
| !!! | TATTTTTGTTTATTTTTTTA+TGG | + | chr1_1:4971940-4971959 | Msa0002770:intron | 5.0% |
| !!! | AAATTATAAAAAGATATTTT+TGG | - | chr1_1:4974959-4974978 | None:intergenic | 5.0% |
| TATTTCCCACGCTTCGCTAC+CGG | - | chr1_1:4964643-4964662 | None:intergenic | 50.0% | |
| ! | TGAGTCTCGTAAAAGCGCAC+GGG | - | chr1_1:4964734-4964753 | None:intergenic | 50.0% |
| ! | CTGAGTCTCGTAAAAGCGCA+CGG | - | chr1_1:4964735-4964754 | None:intergenic | 50.0% |
| ! | TGCGCTTTTACGAGACTCAG+CGG | + | chr1_1:4964735-4964754 | Msa0002770:five_prime_UTR | 50.0% |
| GAATTGGGGGAAGAAGGGTT+AGG | - | chr1_1:4964807-4964826 | None:intergenic | 50.0% | |
| GAAGCGAATTGGGGGAAGAA+GGG | - | chr1_1:4964812-4964831 | None:intergenic | 50.0% | |
| AGAAGCGAATTGGGGGAAGA+AGG | - | chr1_1:4964813-4964832 | None:intergenic | 50.0% | |
| GGCCAGGAATTGTTCTACCT+AGG | - | chr1_1:4966032-4966051 | None:intergenic | 50.0% | |
| GTTAGGCCAGGAGGTAAGTA+AGG | - | chr1_1:4966063-4966082 | None:intergenic | 50.0% | |
| TAATCCAGAGTTAGGCCAGG+AGG | - | chr1_1:4966072-4966091 | None:intergenic | 50.0% | |
| !! | CTGTGGTGATAAGTTGGTGC+AGG | + | chr1_1:4966277-4966296 | Msa0002770:intron | 50.0% |
| !! | AAGTTGGTGCAGGAGCTGTA+AGG | + | chr1_1:4966287-4966306 | Msa0002770:intron | 50.0% |
| CTAATGTCTATCCACGGGTG+CGG | + | chr1_1:4966430-4966449 | Msa0002770:intron | 50.0% | |
| TTCCAACCTGTCAGGGTTGA+CGG | + | chr1_1:4966465-4966484 | Msa0002770:intron | 50.0% | |
| !! | CCTGGTAAGAGCACCATAGA+TGG | - | chr1_1:4966533-4966552 | None:intergenic | 50.0% |
| CCATCTATGGTGCTCTTACC+AGG | + | chr1_1:4966530-4966549 | Msa0002770:intron | 50.0% | |
| ! | TTGCAGGAGTGGGTTCTCTA+CGG | + | chr1_1:4966557-4966576 | Msa0002770:intron | 50.0% |
| GGAGTTCCATCCTGGAAGAA+TGG | + | chr1_1:4966597-4966616 | Msa0002770:intron | 50.0% | |
| TTGCTGGTAAATTCCAGCCC+AGG | + | chr1_1:4967849-4967868 | Msa0002770:intron | 50.0% | |
| ! | TTGGGTTTTACAACCTGGGC+TGG | - | chr1_1:4967865-4967884 | None:intergenic | 50.0% |
| TTGCTTGATACCTCCGCTTG+TGG | + | chr1_1:4968438-4968457 | Msa0002770:intron | 50.0% | |
| GACTGGCATCTGCAGAACAA+GGG | - | chr1_1:4968743-4968762 | None:intergenic | 50.0% | |
| !! | CAGCAGCGCTTAATTTGCCA+AGG | + | chr1_1:4968811-4968830 | Msa0002770:CDS | 50.0% |
| GTTCCCGTTGTTTGTCTAGC+AGG | + | chr1_1:4969074-4969093 | Msa0002770:intron | 50.0% | |
| AAGCTTCCCCAATTTGGCCT+AGG | + | chr1_1:4970152-4970171 | Msa0002770:intron | 50.0% | |
| CGCGATGATACACCCTGTTT+AGG | + | chr1_1:4970286-4970305 | Msa0002770:intron | 50.0% | |
| CCGCTATTGACAACAGAGGA+TGG | - | chr1_1:4970372-4970391 | None:intergenic | 50.0% | |
| ! | CATGGGGTTAGTGGTCAAAG+CGG | + | chr1_1:4970465-4970484 | Msa0002770:intron | 50.0% |
| AAAGGATGAAGCGGACGCTT+TGG | - | chr1_1:4970527-4970546 | None:intergenic | 50.0% | |
| ! | CGTCCGCTTCATCCTTTTTC+TGG | + | chr1_1:4970530-4970549 | Msa0002770:intron | 50.0% |
| CTGGTTGTTTATGCTTGCGG+CGG | + | chr1_1:4970636-4970655 | Msa0002770:intron | 50.0% | |
| TGGTTGTTTATGCTTGCGGC+GGG | + | chr1_1:4970637-4970656 | Msa0002770:intron | 50.0% | |
| GGCCAACCCAAAAATAGACG+TGG | - | chr1_1:4971312-4971331 | None:intergenic | 50.0% | |
| GCCCAGAGAAGATTCGTTGT+TGG | + | chr1_1:4971649-4971668 | Msa0002770:intron | 50.0% | |
| GCCCAACAACGAATCTTCTC+TGG | - | chr1_1:4971654-4971673 | None:intergenic | 50.0% | |
| TTGGCTCAGTCGCTGCAAAA+TGG | - | chr1_1:4971763-4971782 | None:intergenic | 50.0% | |
| AACGTTCCTATTCAGGGCGA+TGG | + | chr1_1:4971845-4971864 | Msa0002770:CDS | 50.0% | |
| GAGAAAGTCGCACACTTGTG+GGG | + | chr1_1:4971908-4971927 | Msa0002770:intron | 50.0% | |
| !! | GCTGTTTTAGGCTCGATCAC+TGG | + | chr1_1:4971982-4972001 | Msa0002770:CDS | 50.0% |
| GTGGTGAAGGGAATGTTGTC+AGG | + | chr1_1:4972025-4972044 | Msa0002770:CDS | 50.0% | |
| AGAGAGACAGTGTGAGGACT+TGG | + | chr1_1:4972172-4972191 | Msa0002770:intron | 50.0% | |
| ! | GGGAAGCTTGACATTTTGGG+AGG | - | chr1_1:4972291-4972310 | None:intergenic | 50.0% |
| TCAGAACTGTGGGAGGTTGT+TGG | + | chr1_1:4972608-4972627 | Msa0002770:intron | 50.0% | |
| CGAAGTTCTTCCAAGGCCTT+GGG | - | chr1_1:4973017-4973036 | None:intergenic | 50.0% | |
| CCAAGGCCTTGGAAGAACTT+CGG | + | chr1_1:4973015-4973034 | Msa0002770:CDS | 50.0% | |
| GGAAGAACTTCGGATTCCAG+TGG | + | chr1_1:4973025-4973044 | Msa0002770:CDS | 50.0% | |
| GAATGGATCTGATGCTCCAC+TGG | - | chr1_1:4973044-4973063 | None:intergenic | 50.0% | |
| TGATCAAGTAGGGGACGGAA+TGG | - | chr1_1:4973061-4973080 | None:intergenic | 50.0% | |
| CGTCCCCTACTTGATCAAAC+TGG | + | chr1_1:4973064-4973083 | Msa0002770:CDS | 50.0% | |
| TACTTGCAGTCAGAGAAGGG+GGG | + | chr1_1:4973443-4973462 | Msa0002770:CDS | 50.0% | |
| ACTATGAGCCTCAGCTGCTT+GGG | - | chr1_1:4973473-4973492 | None:intergenic | 50.0% | |
| TACTATGAGCCTCAGCTGCT+TGG | - | chr1_1:4973474-4973493 | None:intergenic | 50.0% | |
| !! | GGGATCTGGTTCTTCACGTT+TGG | + | chr1_1:4973504-4973523 | Msa0002770:CDS | 50.0% |
| !!! | GCGGGTGATGGAAGATTTTC+TGG | - | chr1_1:4973538-4973557 | None:intergenic | 50.0% |
| AAGACTTCTGCCAAGGATGC+GGG | - | chr1_1:4973556-4973575 | None:intergenic | 50.0% | |
| CAAGACTTCTGCCAAGGATG+CGG | - | chr1_1:4973557-4973576 | None:intergenic | 50.0% | |
| AAATAAAGGAGAGGGAGGGG+GGG | - | chr1_1:4973697-4973716 | None:intergenic | 50.0% | |
| TTGAGTGGTTGATCGCAAGG+GGG | - | chr1_1:4973854-4973873 | None:intergenic | 50.0% | |
| CCTCAATGCCCTAGATTGAG+TGG | - | chr1_1:4973869-4973888 | None:intergenic | 50.0% | |
| !! | CCACTCAATCTAGGGCATTG+AGG | + | chr1_1:4973866-4973885 | Msa0002770:CDS | 50.0% |
| !! | CAATCTAGGGCATTGAGGAC+TGG | + | chr1_1:4973871-4973890 | Msa0002770:CDS | 50.0% |
| CAGCTTGAAAAGGAAGAGGC+TGG | - | chr1_1:4974200-4974219 | None:intergenic | 50.0% | |
| !! | CAGCCTCTTCCTTTTCAAGC+TGG | + | chr1_1:4974198-4974217 | Msa0002770:intron | 50.0% |
| GCTCCAGCTTGAAAAGGAAG+AGG | - | chr1_1:4974204-4974223 | None:intergenic | 50.0% | |
| CTGCTAGTCAAGCAACCTCT+AGG | + | chr1_1:4974502-4974521 | Msa0002770:CDS | 50.0% | |
| GGCTTTACCATCCCGTTCTT+GGG | + | chr1_1:4974646-4974665 | Msa0002770:intron | 50.0% | |
| GAAATCTCCCAAGAACGGGA+TGG | - | chr1_1:4974656-4974675 | None:intergenic | 50.0% | |
| TCAACGTGTAACTACAGGGC+AGG | + | chr1_1:4974674-4974693 | Msa0002770:intron | 50.0% | |
| AGGGCAGGCAAATAGTGAAC+AGG | + | chr1_1:4974689-4974708 | Msa0002770:intron | 50.0% | |
| GGGCAGGCAAATAGTGAACA+GGG | + | chr1_1:4974690-4974709 | Msa0002770:intron | 50.0% | |
| GTGGATTCAGGAGCTGAATG+TGG | - | chr1_1:4974747-4974766 | None:intergenic | 50.0% | |
| CGTGCTTTGCCTTTGCAATG+TGG | - | chr1_1:4974766-4974785 | None:intergenic | 50.0% | |
| AAAGCACGGAAGACTCTGCA+AGG | + | chr1_1:4974778-4974797 | Msa0002770:CDS | 50.0% | |
| ACGGAAGACTCTGCAAGGAA+TGG | + | chr1_1:4974783-4974802 | Msa0002770:CDS | 50.0% | |
| TGTTGCAGCATGCATTGAGG+TGG | - | chr1_1:4975489-4975508 | None:intergenic | 50.0% | |
| AACAGCAGGTTCAGCTTCAG+GGG | - | chr1_1:4975531-4975550 | None:intergenic | 50.0% | |
| CTAACAGCAGGTTCAGCTTC+AGG | - | chr1_1:4975533-4975552 | None:intergenic | 50.0% | |
| ! | GAACCTGCTGTTAGTGCTGA+AGG | + | chr1_1:4975539-4975558 | Msa0002770:CDS | 50.0% |
| ACTCCTTCAGCACTAACAGC+AGG | - | chr1_1:4975545-4975564 | None:intergenic | 50.0% | |
| TGTACTCCGTGAGATCATGC+CGG | + | chr1_1:4975577-4975596 | Msa0002770:CDS | 50.0% | |
| GGCTCAAGATTCATCAACCC+AGG | + | chr1_1:4975649-4975668 | Msa0002770:CDS | 50.0% | |
| GTGGTTGAAGAGAAGGGCTT+CGG | - | chr1_1:4975743-4975762 | None:intergenic | 50.0% | |
| CTACGGGTGGTTGAAGAGAA+GGG | - | chr1_1:4975749-4975768 | None:intergenic | 50.0% | |
| TCTACGGGTGGTTGAAGAGA+AGG | - | chr1_1:4975750-4975769 | None:intergenic | 50.0% | |
| !! | TGTGGGTCAGTAATGGGTGT+TGG | + | chr1_1:4976848-4976867 | Msa0002770:intron | 50.0% |
| ! | CGAAGACCGACTCATTGAGC+CGG | + | chr1_1:4964621-4964640 | Msa0002770:five_prime_UTR | 55.0% |
| !! | TCGCTACCGGCTCAATGAGT+CGG | - | chr1_1:4964630-4964649 | None:intergenic | 55.0% |
| CTTACCTCCTGGCCTAACTC+TGG | + | chr1_1:4966065-4966084 | Msa0002770:intron | 55.0% | |
| GCTCTTACCAGGTTGCTTGC+AGG | + | chr1_1:4966541-4966560 | Msa0002770:intron | 55.0% | |
| TACCAGGTTGCTTGCAGGAG+TGG | + | chr1_1:4966546-4966565 | Msa0002770:intron | 55.0% | |
| ACCAGGTTGCTTGCAGGAGT+GGG | + | chr1_1:4966547-4966566 | Msa0002770:intron | 55.0% | |
| AAGGACATAGCCACAAGCGG+AGG | - | chr1_1:4968451-4968470 | None:intergenic | 55.0% | |
| ! | GGACTGGCATCTGCAGAACA+AGG | - | chr1_1:4968744-4968763 | None:intergenic | 55.0% |
| CAACCTGATCTACCACCTCC+AGG | + | chr1_1:4969631-4969650 | Msa0002770:CDS | 55.0% | |
| CTTCCTGGAGGTGGTAGATC+AGG | - | chr1_1:4969637-4969656 | None:intergenic | 55.0% | |
| TGATTGGGCAGACTTCCTGG+AGG | - | chr1_1:4969649-4969668 | None:intergenic | 55.0% | |
| GCATGATTGGGCAGACTTCC+TGG | - | chr1_1:4969652-4969671 | None:intergenic | 55.0% | |
| GGAAGTCTGCCCAATCATGC+AGG | + | chr1_1:4969652-4969671 | Msa0002770:CDS | 55.0% | |
| GCGACCGCTATTGACAACAG+AGG | - | chr1_1:4970376-4970395 | None:intergenic | 55.0% | |
| ATTTCCGTTACACGCCGCGA+TGG | - | chr1_1:4970407-4970426 | None:intergenic | 55.0% | |
| ! | AATTTGAAGCCTGGCGCACC+TGG | + | chr1_1:4970424-4970443 | Msa0002770:intron | 55.0% |
| GCACCGCAACATTGAAGAGC+GGG | - | chr1_1:4970491-4970510 | None:intergenic | 55.0% | |
| CGCACCGCAACATTGAAGAG+CGG | - | chr1_1:4970492-4970511 | None:intergenic | 55.0% | |
| CGCTCTTCAATGTTGCGGTG+CGG | + | chr1_1:4970490-4970509 | Msa0002770:intron | 55.0% | |
| TCTTCAATGTTGCGGTGCGG+AGG | + | chr1_1:4970493-4970512 | Msa0002770:intron | 55.0% | |
| ! | TGGGCGCTATTTCGATGGTG+CGG | - | chr1_1:4971269-4971288 | None:intergenic | 55.0% |
| ! | CGAAGTGGGCGCTATTTCGA+TGG | - | chr1_1:4971274-4971293 | None:intergenic | 55.0% |
| ATAGACGTGGTGTGGGAGCA+GGG | - | chr1_1:4971299-4971318 | None:intergenic | 55.0% | |
| AATAGACGTGGTGTGGGAGC+AGG | - | chr1_1:4971300-4971319 | None:intergenic | 55.0% | |
| GTCAATGCGAAAATGCGGCG+CGG | - | chr1_1:4971333-4971352 | None:intergenic | 55.0% | |
| CACAGTACTCAAGTCGCTCC+AGG | + | chr1_1:4971803-4971822 | Msa0002770:CDS | 55.0% | |
| GGAACTCCATCGCCCTGAAT+AGG | - | chr1_1:4971854-4971873 | None:intergenic | 55.0% | |
| GAGCATGATTCCCAAGGCCT+TGG | + | chr1_1:4973004-4973023 | Msa0002770:CDS | 55.0% | |
| CCGAAGTTCTTCCAAGGCCT+TGG | - | chr1_1:4973018-4973037 | None:intergenic | 55.0% | |
| ACTTCCGGCGTCAGTTTCTC+TGG | + | chr1_1:4973126-4973145 | Msa0002770:CDS | 55.0% | |
| CTTCCGGCGTCAGTTTCTCT+GGG | + | chr1_1:4973127-4973146 | Msa0002770:CDS | 55.0% | |
| TTCCGGCGTCAGTTTCTCTG+GGG | + | chr1_1:4973128-4973147 | Msa0002770:CDS | 55.0% | |
| TCTTCCATCACCCGCATCCT+TGG | + | chr1_1:4973543-4973562 | Msa0002770:CDS | 55.0% | |
| AATAAAGGAGAGGGAGGGGG+GGG | - | chr1_1:4973696-4973715 | None:intergenic | 55.0% | |
| CGTTTGGGTCAAACACCGGT+AGG | + | chr1_1:4973955-4973974 | Msa0002770:intron | 55.0% | |
| AGGAGGGTAACCAAGCCTAC+CGG | - | chr1_1:4973973-4973992 | None:intergenic | 55.0% | |
| ! | GTAGGCTTGGTTACCCTCCT+TGG | + | chr1_1:4973973-4973992 | Msa0002770:intron | 55.0% |
| !! | AGCTTTGGTGCTGTCCCTGT+AGG | + | chr1_1:4974225-4974244 | Msa0002770:CDS | 55.0% |
| CAGTCTGTGCAGCTCCTACA+GGG | - | chr1_1:4974242-4974261 | None:intergenic | 55.0% | |
| TCAGTCTGTGCAGCTCCTAC+AGG | - | chr1_1:4974243-4974262 | None:intergenic | 55.0% | |
| ! | TTCTTGGCTGGCATTGGGTG+TGG | - | chr1_1:4974430-4974449 | None:intergenic | 55.0% |
| CGCTCTTCTTGGCTGGCATT+GGG | - | chr1_1:4974435-4974454 | None:intergenic | 55.0% | |
| ACGCTCTTCTTGGCTGGCAT+TGG | - | chr1_1:4974436-4974455 | None:intergenic | 55.0% | |
| AATGCCAGCCAAGAAGAGCG+TGG | + | chr1_1:4974435-4974454 | Msa0002770:CDS | 55.0% | |
| ! | ATGCCAGCCAAGAAGAGCGT+GGG | + | chr1_1:4974436-4974455 | Msa0002770:CDS | 55.0% |
| GTGTATCCCCACGCTCTTCT+TGG | - | chr1_1:4974446-4974465 | None:intergenic | 55.0% | |
| TCAAGCAACCTCTAGGCGTC+CGG | + | chr1_1:4974509-4974528 | Msa0002770:CDS | 55.0% | |
| CGTCCGGATGCATCTATTGC+TGG | + | chr1_1:4974525-4974544 | Msa0002770:CDS | 55.0% | |
| ACCATGGTTGCAGCAGTACC+TGG | + | chr1_1:4974579-4974598 | Msa0002770:CDS | 55.0% | |
| ! | ACCAGGTACTGCTGCAACCA+TGG | - | chr1_1:4974583-4974602 | None:intergenic | 55.0% |
| GGGCTTTACCATCCCGTTCT+TGG | + | chr1_1:4974645-4974664 | Msa0002770:intron | 55.0% | |
| AGGTTCAGCTTCAGGGGCTT+GGG | - | chr1_1:4975525-4975544 | None:intergenic | 55.0% | |
| TGGGGGCAAAGAAGACCTAG+TGG | - | chr1_1:4975854-4975873 | None:intergenic | 55.0% | |
| ACTAGGTCTTCTTTGCCCCC+AGG | + | chr1_1:4975853-4975872 | Msa0002770:intron | 55.0% | |
| CTTACCGTACCCTGCGTATG+CGG | + | chr1_1:4976400-4976419 | Msa0002770:intron | 55.0% | |
| TTACCGTACCCTGCGTATGC+GGG | + | chr1_1:4976401-4976420 | Msa0002770:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr1_1:4976412-4976431 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr1_1:4976413-4976432 | None:intergenic | 55.0% | |
| AATGCTAACCAGTGCCCCAG+AGG | + | chr1_1:4976465-4976484 | Msa0002770:intron | 55.0% | |
| ATTGAGCCGGTAGCGAAGCG+TGG | + | chr1_1:4964634-4964653 | Msa0002770:five_prime_UTR | 60.0% | |
| TTGAGCCGGTAGCGAAGCGT+GGG | + | chr1_1:4964635-4964654 | Msa0002770:five_prime_UTR | 60.0% | |
| TGCAAGTTCATCCGCACCCG+TGG | - | chr1_1:4966444-4966463 | None:intergenic | 60.0% | |
| CTCCGTCAACCCTGACAGGT+TGG | - | chr1_1:4966470-4966489 | None:intergenic | 60.0% | |
| CAACCTGTCAGGGTTGACGG+AGG | + | chr1_1:4966468-4966487 | Msa0002770:intron | 60.0% | |
| ACTCCTCCGTCAACCCTGAC+AGG | - | chr1_1:4966474-4966493 | None:intergenic | 60.0% | |
| ACCCACTCCTGCAAGCAACC+TGG | - | chr1_1:4966551-4966570 | None:intergenic | 60.0% | |
| ! | CTGCAAAGTGCTCTGCAGCC+AGG | + | chr1_1:4968486-4968505 | Msa0002770:intron | 60.0% |
| TTGGGCAGACTTCCTGGAGG+TGG | - | chr1_1:4969646-4969665 | None:intergenic | 60.0% | |
| ACAGGGTGTATCATCGCGCG+AGG | - | chr1_1:4970284-4970303 | None:intergenic | 60.0% | |
| CTCAGTGGCAGTCGCAGATG+AGG | - | chr1_1:4970331-4970350 | None:intergenic | 60.0% | |
| CGCATGTCGCATGGGGTTAG+TGG | + | chr1_1:4970456-4970475 | Msa0002770:intron | 60.0% | |
| CGGCCCGCTCTTCAATGTTG+CGG | + | chr1_1:4970485-4970504 | Msa0002770:intron | 60.0% | |
| GTGGCAGTCGCAGGAAACAG+AGG | - | chr1_1:4971386-4971405 | None:intergenic | 60.0% | |
| ACACGTTCAGTGGCAGTCGC+AGG | - | chr1_1:4971395-4971414 | None:intergenic | 60.0% | |
| GACCCCAGAGAAACTGACGC+CGG | - | chr1_1:4973133-4973152 | None:intergenic | 60.0% | |
| TCTGCCAAGGATGCGGGTGA+TGG | - | chr1_1:4973550-4973569 | None:intergenic | 60.0% | |
| GGGTCAAACACCGGTAGGCT+TGG | + | chr1_1:4973960-4973979 | Msa0002770:intron | 60.0% | |
| ! | TGCCAGCCAAGAAGAGCGTG+GGG | + | chr1_1:4974437-4974456 | Msa0002770:CDS | 60.0% |
| ATCCCCACGCTCTTCTTGGC+TGG | - | chr1_1:4974442-4974461 | None:intergenic | 60.0% | |
| AGATGCATCCGGACGCCTAG+AGG | - | chr1_1:4974520-4974539 | None:intergenic | 60.0% | |
| TGCAGCAGTACCTGGTCCCT+TGG | + | chr1_1:4974587-4974606 | Msa0002770:CDS | 60.0% | |
| GCAGCAGTACCTGGTCCCTT+GGG | + | chr1_1:4974588-4974607 | Msa0002770:CDS | 60.0% | |
| GGTTCAGCTTCAGGGGCTTG+GGG | - | chr1_1:4975524-4975543 | None:intergenic | 60.0% | |
| CAGGTTCAGCTTCAGGGGCT+TGG | - | chr1_1:4975526-4975545 | None:intergenic | 60.0% | |
| GGGACATCGCGCAGACATAG+TGG | + | chr1_1:4976060-4976079 | Msa0002770:CDS | 60.0% | |
| CGCATACGCAGGGTACGGTA+AGG | - | chr1_1:4976402-4976421 | None:intergenic | 60.0% | |
| ! | AACCAGTGCCCCAGAGGCAT+TGG | + | chr1_1:4976471-4976490 | Msa0002770:intron | 60.0% |
| !! | AACCAATGCCTCTGGGGCAC+TGG | - | chr1_1:4976476-4976495 | None:intergenic | 60.0% |
| TTACACGCCGCGATGGCAGG+CGG | - | chr1_1:4970400-4970419 | None:intergenic | 65.0% | |
| CCTGCCATCGCGGCGTGTAA+CGG | + | chr1_1:4970400-4970419 | Msa0002770:intron | 65.0% | |
| GTTGCGGTGCGGAGGTGATG+CGG | + | chr1_1:4970501-4970520 | Msa0002770:intron | 65.0% | |
| GGGGAATGCCCAAGCAGCTG+AGG | + | chr1_1:4973462-4973481 | Msa0002770:CDS | 65.0% | |
| GCTCCCGCATACGCAGGGTA+CGG | - | chr1_1:4976407-4976426 | None:intergenic | 65.0% | |
| CCGTTACACGCCGCGATGGC+AGG | - | chr1_1:4970403-4970422 | None:intergenic | 70.0% | |
| TCCCGACGGCGCATGTCGCA+TGG | + | chr1_1:4970447-4970466 | Msa0002770:intron | 70.0% | |
| CCCATGCGACATGCGCCGTC+GGG | - | chr1_1:4970451-4970470 | None:intergenic | 70.0% | |
| CCCGACGGCGCATGTCGCAT+GGG | + | chr1_1:4970448-4970467 | Msa0002770:intron | 70.0% | |
| CCCCATGCGACATGCGCCGT+CGG | - | chr1_1:4970452-4970471 | None:intergenic | 70.0% | |
| CCGACGGCGCATGTCGCATG+GGG | + | chr1_1:4970449-4970468 | Msa0002770:intron | 70.0% | |
| GTGGGAGCAGGGCGCGAAGT+GGG | - | chr1_1:4971288-4971307 | None:intergenic | 70.0% | |
| TGTGGGAGCAGGGCGCGAAG+TGG | - | chr1_1:4971289-4971308 | None:intergenic | 70.0% | |
| CCTGGCGCACCTGGTCCCGA+CGG | + | chr1_1:4970433-4970452 | Msa0002770:intron | 75.0% | |
| CGACATGCGCCGTCGGGACC+AGG | - | chr1_1:4970445-4970464 | None:intergenic | 75.0% | |
| ! | GGTCGCGCCGCCTGCCATCG+CGG | + | chr1_1:4970390-4970409 | Msa0002770:intron | 80.0% |
| ! | CCGTCGGGACCAGGTGCGCC+AGG | - | chr1_1:4970436-4970455 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4964618 | 4977358 | 4964618 | ID=Msa0002770;Name=Msa0002770 |
| chr1_1 | mRNA | 4964618 | 4977358 | 4964618 | ID=Msa0002770-mRNA-1;Parent=Msa0002770;Name=Msa0002770-mRNA-1;_AED=0.13;_eAED=0.15;_QI=243|0.82|0.72|1|0.64|0.55|18|313|706 |
| chr1_1 | exon | 4964618 | 4964840 | 4964618 | ID=Msa0002770-mRNA-1:exon:1498;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4967012 | 4967154 | 4967012 | ID=Msa0002770-mRNA-1:exon:1499;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4968754 | 4968871 | 4968754 | ID=Msa0002770-mRNA-1:exon:1500;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4969593 | 4969673 | 4969593 | ID=Msa0002770-mRNA-1:exon:1501;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4971771 | 4971889 | 4971771 | ID=Msa0002770-mRNA-1:exon:1502;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4971973 | 4972047 | 4971973 | ID=Msa0002770-mRNA-1:exon:1503;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4973004 | 4973165 | 4973004 | ID=Msa0002770-mRNA-1:exon:1504;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4973286 | 4973355 | 4973286 | ID=Msa0002770-mRNA-1:exon:1505;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4973383 | 4973624 | 4973383 | ID=Msa0002770-mRNA-1:exon:1506;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4973808 | 4973972 | 4973808 | ID=Msa0002770-mRNA-1:exon:1507;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4974055 | 4974126 | 4974055 | ID=Msa0002770-mRNA-1:exon:1508;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4974201 | 4974330 | 4974201 | ID=Msa0002770-mRNA-1:exon:1509;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4974418 | 4974633 | 4974418 | ID=Msa0002770-mRNA-1:exon:1510;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4974691 | 4974804 | 4974691 | ID=Msa0002770-mRNA-1:exon:1511;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4975282 | 4975401 | 4975282 | ID=Msa0002770-mRNA-1:exon:1512;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4975441 | 4975670 | 4975441 | ID=Msa0002770-mRNA-1:exon:1513;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4976045 | 4976119 | 4976045 | ID=Msa0002770-mRNA-1:exon:1514;Parent=Msa0002770-mRNA-1 |
| chr1_1 | exon | 4977037 | 4977358 | 4977037 | ID=Msa0002770-mRNA-1:exon:1515;Parent=Msa0002770-mRNA-1 |
| chr1_1 | five_prime_UTR | 4964618 | 4964840 | 4964618 | ID=Msa0002770-mRNA-1:five_prime_utr;Parent=Msa0002770-mRNA-1 |
| chr1_1 | five_prime_UTR | 4967012 | 4967031 | 4967012 | ID=Msa0002770-mRNA-1:five_prime_utr;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4967032 | 4967154 | 4967032 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4968754 | 4968871 | 4968754 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4969593 | 4969673 | 4969593 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4971771 | 4971889 | 4971771 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4971973 | 4972047 | 4971973 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4973004 | 4973165 | 4973004 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4973286 | 4973355 | 4973286 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4973383 | 4973624 | 4973383 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4973808 | 4973972 | 4973808 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4974055 | 4974126 | 4974055 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4974201 | 4974330 | 4974201 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4974418 | 4974633 | 4974418 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4974691 | 4974804 | 4974691 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4975282 | 4975401 | 4975282 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4975441 | 4975670 | 4975441 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4976045 | 4976119 | 4976045 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | CDS | 4977037 | 4977045 | 4977037 | ID=Msa0002770-mRNA-1:cds;Parent=Msa0002770-mRNA-1 |
| chr1_1 | three_prime_UTR | 4977046 | 4977358 | 4977046 | ID=Msa0002770-mRNA-1:three_prime_utr;Parent=Msa0002770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
