Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383480 | XP_003600838.1 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383480 | sp|P92961|PROT1_ARATH | 70.998 | 431 | 123 | 1 | 6 | 436 | 14 | 442 | 0.0 | 653 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383480 | G7JAM5 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000490 | Msa1383480 | -0.833641 | 4.746148e-56 | -8.615850e-47 |
Msa0002770 | Msa1383480 | -0.812608 | 3.892716e-51 | -8.615850e-47 |
Msa0003560 | Msa1383480 | 0.804443 | 2.155129e-49 | -8.615850e-47 |
Msa0072170 | Msa1383480 | 0.815269 | 1.007934e-51 | -8.615850e-47 |
Msa0090030 | Msa1383480 | 0.800769 | 1.233755e-48 | -8.615850e-47 |
Msa0120540 | Msa1383480 | 0.810011 | 1.424912e-50 | -8.615850e-47 |
Msa1350690 | Msa1383480 | 0.861152 | 1.254039e-63 | -8.615850e-47 |
Msa1360280 | Msa1383480 | 0.850644 | 1.486059e-60 | -8.615850e-47 |
Msa1363700 | Msa1383480 | 0.820423 | 6.914142e-53 | -8.615850e-47 |
Msa1383480 | Msa1404720 | 0.839278 | 1.743369e-57 | -8.615850e-47 |
Msa1383480 | Msa1415920 | 0.863379 | 2.596140e-64 | -8.615850e-47 |
Msa1383480 | Msa1419860 | 0.800003 | 1.766709e-48 | -8.615850e-47 |
Msa1383480 | Msa1442220 | -0.830131 | 3.490777e-55 | -8.615850e-47 |
Msa0609970 | Msa1383480 | 0.830293 | 3.186037e-55 | -8.615850e-47 |
Msa0610770 | Msa1383480 | 0.833127 | 6.373968e-56 | -8.615850e-47 |
Msa0614990 | Msa1383480 | 0.804760 | 1.850141e-49 | -8.615850e-47 |
Msa0622340 | Msa1383480 | 0.807942 | 3.950960e-50 | -8.615850e-47 |
Msa0650620 | Msa1383480 | 0.827690 | 1.361118e-54 | -8.615850e-47 |
Msa0651320 | Msa1383480 | 0.842748 | 2.139319e-58 | -8.615850e-47 |
Msa0693490 | Msa1383480 | 0.826204 | 3.083780e-54 | -8.615850e-47 |
Msa0755080 | Msa1383480 | 0.846855 | 1.670722e-59 | -8.615850e-47 |
Msa0755090 | Msa1383480 | 0.821584 | 3.736049e-53 | -8.615850e-47 |
Msa0834450 | Msa1383480 | 0.862261 | 5.744336e-64 | -8.615850e-47 |
Msa0834460 | Msa1383480 | 0.836591 | 8.557266e-57 | -8.615850e-47 |
Msa0173330 | Msa1383480 | 0.817574 | 3.073371e-52 | -8.615850e-47 |
Msa0196020 | Msa1383480 | -0.803591 | 3.239711e-49 | -8.615850e-47 |
Msa0223100 | Msa1383480 | 0.812709 | 3.698890e-51 | -8.615850e-47 |
Msa0223290 | Msa1383480 | 0.820166 | 7.918314e-53 | -8.615850e-47 |
Msa0223380 | Msa1383480 | 0.809879 | 1.521444e-50 | -8.615850e-47 |
Msa1229850 | Msa1383480 | 0.830531 | 2.786453e-55 | -8.615850e-47 |
Msa1235020 | Msa1383480 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
Msa1236070 | Msa1383480 | -0.815316 | 9.841780e-52 | -8.615850e-47 |
Msa1272520 | Msa1383480 | 0.879706 | 1.001201e-69 | -8.615850e-47 |
Msa1310660 | Msa1383480 | 0.874830 | 4.968722e-68 | -8.615850e-47 |
Msa0368780 | Msa1383480 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
Msa0370310 | Msa1383480 | 0.807715 | 4.414130e-50 | -8.615850e-47 |
Msa0370870 | Msa1383480 | 0.861641 | 8.894080e-64 | -8.615850e-47 |
Msa0377530 | Msa1383480 | 0.812695 | 3.725282e-51 | -8.615850e-47 |
Msa0381220 | Msa1383480 | 0.814432 | 1.545637e-51 | -8.615850e-47 |
Msa0388710 | Msa1383480 | 0.820502 | 6.631735e-53 | -8.615850e-47 |
Msa0404700 | Msa1383480 | 0.867677 | 1.147628e-65 | -8.615850e-47 |
Msa0416320 | Msa1383480 | 0.999253 | 1.051343e-298 | -8.615850e-47 |
Msa0419050 | Msa1383480 | 0.800455 | 1.429731e-48 | -8.615850e-47 |
Msa0426810 | Msa1383480 | 0.836332 | 9.955259e-57 | -8.615850e-47 |
Msa0462540 | Msa1383480 | 0.862014 | 6.840141e-64 | -8.615850e-47 |
Msa0464900 | Msa1383480 | 0.820195 | 7.798254e-53 | -8.615850e-47 |
Msa0471790 | Msa1383480 | 0.850877 | 1.278083e-60 | -8.615850e-47 |
Msa0475050 | Msa1383480 | 0.848120 | 7.506006e-60 | -8.615850e-47 |
Msa0982590 | Msa1383480 | 0.855024 | 8.325368e-62 | -8.615850e-47 |
Msa1048700 | Msa1383480 | 0.808175 | 3.523063e-50 | -8.615850e-47 |
Msa0266210 | Msa1383480 | 0.853257 | 2.693075e-61 | -8.615850e-47 |
Msa0275400 | Msa1383480 | -0.824433 | 8.093601e-54 | -8.615850e-47 |
Msa0287670 | Msa1383480 | 0.862236 | 5.844354e-64 | -8.615850e-47 |
Msa0288320 | Msa1383480 | 0.846587 | 1.978069e-59 | -8.615850e-47 |
Msa0289400 | Msa1383480 | 0.805812 | 1.114218e-49 | -8.615850e-47 |
Msa0302650 | Msa1383480 | 0.846250 | 2.443460e-59 | -8.615850e-47 |
Msa0312310 | Msa1383480 | 0.811580 | 6.520141e-51 | -8.615850e-47 |
Msa0349680 | Msa1383480 | 0.827601 | 1.429411e-54 | -8.615850e-47 |
Msa0362060 | Msa1383480 | 0.944301 | 2.508901e-103 | -8.615850e-47 |
Msa0363100 | Msa1383480 | 0.853944 | 1.708838e-61 | -8.615850e-47 |
Msa0363170 | Msa1383480 | 0.866241 | 3.292359e-65 | -8.615850e-47 |
Msa1157920 | Msa1383480 | 0.808632 | 2.815626e-50 | -8.615850e-47 |
Msa1160580 | Msa1383480 | 0.814347 | 1.613693e-51 | -8.615850e-47 |
Msa1164530 | Msa1383480 | 0.810707 | 1.008065e-50 | -8.615850e-47 |
Msa1182640 | Msa1383480 | 0.898238 | 6.450231e-77 | -8.615850e-47 |
Msa1190990 | Msa1383480 | 0.800879 | 1.171814e-48 | -8.615850e-47 |
Msa1215810 | Msa1383480 | -0.803715 | 3.054187e-49 | -8.615850e-47 |
Msa1218650 | Msa1383480 | 0.811819 | 5.783664e-51 | -8.615850e-47 |
Msa0491520 | Msa1383480 | 0.815470 | 9.096312e-52 | -8.615850e-47 |
Msa0508540 | Msa1383480 | 0.815268 | 1.008584e-51 | -8.615850e-47 |
Msa0510560 | Msa1383480 | 0.809493 | 1.841163e-50 | -8.615850e-47 |
Msa0517490 | Msa1383480 | 0.802189 | 6.314007e-49 | -8.615850e-47 |
Msa0530380 | Msa1383480 | 0.800647 | 1.306829e-48 | -8.615850e-47 |
Msa0579340 | Msa1383480 | 0.800086 | 1.699733e-48 | -8.615850e-47 |
Msa0581920 | Msa1383480 | 0.852270 | 5.153740e-61 | -8.615850e-47 |
Msa0598560 | Msa1383480 | 0.829582 | 4.750015e-55 | -8.615850e-47 |
Msa0866800 | Msa1383480 | 0.821331 | 4.273612e-53 | -8.615850e-47 |
Msa0908170 | Msa1383480 | 0.819836 | 9.423837e-53 | -8.615850e-47 |
Msa0944730 | Msa1383480 | 0.868678 | 5.463225e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383480 | MtrunA17_Chr3g0112971 | 96.789 | 436 | 14 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
Msa1383480 | MtrunA17_Chr5g0436281 | 77.285 | 383 | 87 | 0 | 54 | 436 | 1 | 383 | 0.0 | 626 |
Msa1383480 | MtrunA17_Chr4g0058161 | 40.732 | 437 | 255 | 4 | 1 | 436 | 17 | 450 | 2.46e-113 | 340 |
Msa1383480 | MtrunA17_Chr1g0184721 | 32.152 | 395 | 251 | 7 | 54 | 436 | 51 | 440 | 4.29e-51 | 178 |
Msa1383480 | MtrunA17_Chr1g0198081 | 29.954 | 434 | 269 | 11 | 25 | 435 | 59 | 480 | 2.91e-45 | 163 |
Msa1383480 | MtrunA17_Chr8g0387941 | 27.918 | 437 | 269 | 12 | 26 | 433 | 28 | 447 | 6.83e-44 | 159 |
Msa1383480 | MtrunA17_Chr4g0027241 | 29.680 | 438 | 265 | 13 | 26 | 436 | 41 | 462 | 1.90e-41 | 152 |
Msa1383480 | MtrunA17_Chr6g0459011 | 29.620 | 395 | 245 | 13 | 54 | 429 | 13 | 393 | 3.42e-26 | 109 |
Msa1383480 | MtrunA17_Chr6g0458931 | 26.395 | 466 | 287 | 17 | 5 | 434 | 10 | 455 | 1.39e-25 | 108 |
Msa1383480 | MtrunA17_Chr5g0422741 | 28.535 | 396 | 256 | 11 | 54 | 433 | 54 | 438 | 1.05e-24 | 105 |
Msa1383480 | MtrunA17_Chr2g0331721 | 26.000 | 450 | 277 | 15 | 20 | 433 | 31 | 460 | 1.40e-24 | 105 |
Msa1383480 | MtrunA17_Chr6g0459021 | 27.617 | 449 | 292 | 14 | 2 | 434 | 16 | 447 | 4.13e-24 | 103 |
Msa1383480 | MtrunA17_Chr1g0198531 | 27.157 | 394 | 264 | 8 | 54 | 433 | 52 | 436 | 6.71e-24 | 103 |
Msa1383480 | MtrunA17_Chr4g0057851 | 26.108 | 406 | 280 | 10 | 39 | 432 | 24 | 421 | 2.01e-23 | 101 |
Msa1383480 | MtrunA17_Chr8g0376991 | 25.500 | 400 | 265 | 14 | 54 | 434 | 51 | 436 | 1.65e-22 | 99.4 |
Msa1383480 | MtrunA17_Chr1g0198541 | 27.778 | 396 | 259 | 12 | 54 | 433 | 52 | 436 | 4.45e-22 | 98.2 |
Msa1383480 | MtrunA17_Chr3g0122921 | 26.281 | 449 | 276 | 16 | 12 | 434 | 9 | 428 | 5.20e-22 | 97.8 |
Msa1383480 | MtrunA17_Chr2g0328081 | 26.923 | 390 | 273 | 8 | 54 | 434 | 42 | 428 | 8.88e-22 | 97.1 |
Msa1383480 | MtrunA17_Chr3g0130641 | 25.376 | 465 | 300 | 15 | 7 | 435 | 22 | 475 | 2.39e-21 | 96.3 |
Msa1383480 | MtrunA17_Chr6g0458921 | 27.877 | 391 | 268 | 10 | 54 | 434 | 42 | 428 | 4.05e-21 | 95.1 |
Msa1383480 | MtrunA17_Chr8g0384661 | 25.918 | 463 | 287 | 17 | 12 | 433 | 43 | 490 | 5.59e-21 | 95.1 |
Msa1383480 | MtrunA17_Chr3g0125091 | 26.767 | 467 | 286 | 16 | 9 | 433 | 24 | 476 | 5.73e-21 | 95.1 |
Msa1383480 | MtrunA17_Chr3g0077651 | 24.938 | 401 | 264 | 12 | 57 | 434 | 83 | 469 | 8.76e-21 | 94.4 |
Msa1383480 | MtrunA17_Chr3g0140761 | 25.160 | 469 | 302 | 17 | 8 | 433 | 16 | 478 | 2.37e-20 | 93.2 |
Msa1383480 | MtrunA17_Chr3g0130651 | 26.794 | 418 | 258 | 16 | 9 | 390 | 16 | 421 | 7.25e-20 | 91.7 |
Msa1383480 | MtrunA17_Chr6g0459031 | 28.244 | 393 | 264 | 12 | 54 | 434 | 42 | 428 | 8.49e-20 | 91.3 |
Msa1383480 | MtrunA17_Chr1g0159761 | 27.251 | 422 | 257 | 15 | 9 | 390 | 17 | 428 | 9.70e-20 | 91.3 |
Msa1383480 | MtrunA17_Chr7g0230011 | 28.117 | 409 | 243 | 15 | 54 | 434 | 58 | 443 | 1.39e-19 | 90.5 |
Msa1383480 | MtrunA17_Chr4g0037201 | 25.678 | 479 | 289 | 19 | 7 | 433 | 45 | 508 | 1.80e-19 | 90.9 |
Msa1383480 | MtrunA17_Chr3g0125081 | 26.652 | 469 | 289 | 16 | 9 | 436 | 24 | 478 | 2.25e-19 | 90.1 |
Msa1383480 | MtrunA17_Chr1g0206871 | 25.751 | 466 | 276 | 18 | 27 | 435 | 17 | 469 | 2.62e-19 | 90.1 |
Msa1383480 | MtrunA17_Chr1g0146491 | 25.902 | 471 | 296 | 20 | 8 | 433 | 6 | 468 | 5.25e-19 | 89.0 |
Msa1383480 | MtrunA17_Chr3g0125101 | 26.526 | 426 | 256 | 16 | 57 | 436 | 65 | 479 | 5.34e-19 | 89.0 |
Msa1383480 | MtrunA17_Chr3g0143701 | 25.833 | 360 | 242 | 12 | 57 | 395 | 115 | 470 | 3.23e-16 | 80.9 |
Msa1383480 | MtrunA17_Chr4g0038711 | 25.062 | 403 | 254 | 16 | 57 | 424 | 101 | 490 | 1.02e-15 | 79.3 |
Msa1383480 | MtrunA17_Chr4g0027261 | 30.500 | 200 | 113 | 6 | 250 | 436 | 1 | 187 | 1.29e-15 | 75.1 |
Msa1383480 | MtrunA17_Chr6g0459001 | 25.986 | 431 | 265 | 12 | 54 | 434 | 50 | 476 | 1.38e-15 | 78.6 |
Msa1383480 | MtrunA17_Chr1g0146391 | 23.095 | 420 | 279 | 13 | 54 | 434 | 40 | 454 | 2.64e-15 | 77.8 |
Msa1383480 | MtrunA17_Chr3g0103231 | 25.858 | 379 | 225 | 15 | 57 | 390 | 54 | 421 | 8.89e-15 | 76.3 |
Msa1383480 | MtrunA17_Chr2g0293331 | 23.990 | 421 | 268 | 15 | 57 | 434 | 43 | 454 | 1.23e-14 | 75.5 |
Msa1383480 | MtrunA17_Chr5g0430221 | 68.085 | 47 | 15 | 0 | 146 | 192 | 1 | 47 | 2.02e-14 | 70.5 |
Msa1383480 | MtrunA17_Chr5g0406331 | 25.521 | 384 | 252 | 13 | 37 | 396 | 99 | 472 | 2.24e-14 | 75.1 |
Msa1383480 | MtrunA17_Chr5g0406351 | 25.459 | 381 | 249 | 13 | 37 | 392 | 120 | 490 | 1.81e-13 | 72.4 |
Msa1383480 | MtrunA17_Chr3g0103211 | 23.592 | 373 | 241 | 15 | 57 | 390 | 54 | 421 | 4.25e-13 | 70.9 |
Msa1383480 | MtrunA17_Chr5g0447221 | 23.765 | 425 | 271 | 17 | 37 | 420 | 41 | 453 | 4.28e-13 | 70.9 |
Msa1383480 | MtrunA17_Chr3g0103221 | 25.393 | 382 | 223 | 18 | 57 | 390 | 61 | 428 | 1.10e-12 | 69.7 |
Msa1383480 | MtrunA17_Chr1g0146411 | 23.718 | 468 | 311 | 18 | 3 | 433 | 11 | 469 | 1.15e-12 | 69.7 |
Msa1383480 | MtrunA17_Chr1g0206831 | 28.000 | 300 | 172 | 11 | 166 | 432 | 51 | 339 | 3.83e-12 | 67.4 |
Msa1383480 | MtrunA17_Chr3g0103271 | 23.575 | 386 | 255 | 13 | 37 | 385 | 39 | 421 | 1.83e-11 | 65.9 |
Msa1383480 | MtrunA17_Chr3g0140531 | 23.474 | 426 | 264 | 15 | 57 | 433 | 55 | 467 | 8.00e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1383480 | AT2G39890.2 | 70.998 | 431 | 123 | 1 | 6 | 436 | 14 | 442 | 0.0 | 653 |
Msa1383480 | AT2G39890.1 | 70.998 | 431 | 123 | 1 | 6 | 436 | 14 | 442 | 0.0 | 653 |
Msa1383480 | AT3G55740.1 | 71.496 | 421 | 120 | 0 | 16 | 436 | 19 | 439 | 0.0 | 645 |
Msa1383480 | AT2G36590.1 | 68.287 | 432 | 133 | 1 | 9 | 436 | 5 | 436 | 0.0 | 622 |
Msa1383480 | AT2G39890.3 | 70.757 | 383 | 112 | 0 | 54 | 436 | 1 | 383 | 0.0 | 583 |
Msa1383480 | AT3G55740.2 | 70.496 | 383 | 113 | 0 | 54 | 436 | 1 | 383 | 0.0 | 575 |
Msa1383480 | AT3G55740.3 | 70.496 | 383 | 113 | 0 | 54 | 436 | 1 | 383 | 0.0 | 575 |
Msa1383480 | AT2G36590.2 | 67.937 | 315 | 97 | 1 | 9 | 319 | 5 | 319 | 8.46e-164 | 464 |
Msa1383480 | AT1G08230.2 | 29.806 | 463 | 283 | 13 | 2 | 436 | 3 | 451 | 8.40e-45 | 162 |
Msa1383480 | AT5G41800.1 | 27.397 | 438 | 274 | 12 | 26 | 435 | 27 | 448 | 4.73e-37 | 141 |
Msa1383480 | AT1G08230.4 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.33e-34 | 129 |
Msa1383480 | AT1G08230.6 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.33e-34 | 129 |
Msa1383480 | AT1G08230.5 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.33e-34 | 129 |
Msa1383480 | AT1G08230.3 | 31.707 | 328 | 198 | 8 | 127 | 436 | 32 | 351 | 1.32e-33 | 129 |
Msa1383480 | AT1G24400.1 | 27.136 | 398 | 261 | 12 | 54 | 434 | 56 | 441 | 2.81e-25 | 107 |
Msa1383480 | AT5G40780.1 | 25.275 | 455 | 298 | 12 | 8 | 434 | 6 | 446 | 6.19e-25 | 107 |
Msa1383480 | AT5G40780.3 | 26.382 | 398 | 264 | 9 | 54 | 434 | 13 | 398 | 8.54e-25 | 105 |
Msa1383480 | AT5G40780.2 | 26.382 | 398 | 264 | 9 | 54 | 434 | 13 | 398 | 8.54e-25 | 105 |
Msa1383480 | AT1G67640.1 | 25.385 | 390 | 278 | 9 | 54 | 434 | 56 | 441 | 8.73e-23 | 100 |
Msa1383480 | AT1G48640.1 | 25.431 | 464 | 301 | 15 | 1 | 434 | 5 | 453 | 1.32e-21 | 97.1 |
Msa1383480 | AT5G09220.1 | 26.253 | 419 | 262 | 13 | 57 | 433 | 76 | 489 | 1.65e-21 | 97.1 |
Msa1383480 | AT5G63850.1 | 24.628 | 471 | 290 | 18 | 7 | 433 | 13 | 462 | 1.85e-20 | 94.0 |
Msa1383480 | AT1G25530.1 | 28.715 | 397 | 256 | 11 | 54 | 434 | 55 | 440 | 2.80e-20 | 93.2 |
Msa1383480 | AT1G71680.1 | 25.885 | 452 | 303 | 13 | 2 | 434 | 10 | 448 | 8.67e-20 | 91.7 |
Msa1383480 | AT1G44100.1 | 27.197 | 478 | 276 | 23 | 9 | 433 | 18 | 476 | 3.12e-19 | 90.1 |
Msa1383480 | AT1G77380.1 | 26.329 | 395 | 241 | 17 | 57 | 410 | 60 | 445 | 1.13e-17 | 85.5 |
Msa1383480 | AT1G58360.1 | 24.211 | 475 | 302 | 15 | 6 | 433 | 17 | 480 | 1.64e-17 | 85.1 |
Msa1383480 | AT3G01760.1 | 24.719 | 445 | 298 | 12 | 6 | 423 | 3 | 437 | 2.00e-17 | 84.7 |
Msa1383480 | AT1G61270.1 | 25.517 | 435 | 290 | 13 | 7 | 420 | 13 | 434 | 7.29e-17 | 82.8 |
Msa1383480 | AT1G10010.2 | 26.042 | 480 | 290 | 20 | 4 | 436 | 14 | 475 | 1.34e-15 | 79.0 |
Msa1383480 | AT1G10010.1 | 26.042 | 480 | 290 | 20 | 4 | 436 | 13 | 474 | 1.54e-15 | 79.0 |
Msa1383480 | AT1G71680.2 | 26.269 | 335 | 229 | 11 | 2 | 323 | 10 | 339 | 3.95e-15 | 77.0 |
Find 129 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAATTTGATGAGCAGTTTC+TGG | 0.188300 | tig0020598:-112396 | None:intergenic |
AAATACTGGTTACATCATTT+TGG | 0.194408 | tig0020598:+114127 | Msa1383480:CDS |
TGGTTACCTTTGCAGGATAC+TGG | 0.253653 | tig0020598:+115215 | Msa1383480:CDS |
TTATTTAATTGTAGGTAAAA+AGG | 0.256204 | tig0020598:+114058 | Msa1383480:intron |
ATCTTTCAGCTCTTGGAGTT+TGG | 0.276364 | tig0020598:+114564 | Msa1383480:CDS |
AAGTCCGATGTATGAGTATT+TGG | 0.293374 | tig0020598:+115453 | Msa1383480:CDS |
GAAGAAGTAGCTTAAATTTA+CGG | 0.297415 | tig0020598:+112264 | Msa1383480:five_prime_UTR |
AGCCGCTATGAATGTGTTAA+AGG | 0.301338 | tig0020598:-115557 | None:intergenic |
ATTCCTCATCTTTCAGCTCT+TGG | 0.319082 | tig0020598:+114557 | Msa1383480:CDS |
TGGTTCCTCTTGGTTGGGTA+GGG | 0.321672 | tig0020598:+113829 | Msa1383480:CDS |
TCTTTGCCTTGTAGTACATA+TGG | 0.322707 | tig0020598:-115657 | None:intergenic |
ATTGCTATGCTCCATGAATA+TGG | 0.328776 | tig0020598:+113906 | Msa1383480:CDS |
ATGTACATGGTTACCTTTGC+AGG | 0.331651 | tig0020598:+115208 | Msa1383480:CDS |
TTTGCAGGATACTGGGCTTA+TGG | 0.333787 | tig0020598:+115223 | Msa1383480:CDS |
TGGATACTCAGGGACCATTA+TGG | 0.339605 | tig0020598:+113809 | Msa1383480:CDS |
CCATTATGGTTCCTCTTGGT+TGG | 0.339833 | tig0020598:+113823 | Msa1383480:CDS |
TTCATCATGTTCTTGACAAC+TGG | 0.353000 | tig0020598:-115148 | None:intergenic |
TCAGCTCTTGGAGTTTGGTT+GGG | 0.354431 | tig0020598:+114569 | Msa1383480:CDS |
TTCAGCTCTTGGAGTTTGGT+TGG | 0.369188 | tig0020598:+114568 | Msa1383480:CDS |
GAGTATTTGGATACTAGATA+TGG | 0.371361 | tig0020598:+115466 | Msa1383480:CDS |
GATCTTGCTGGATATGTATA+TGG | 0.372159 | tig0020598:+113954 | Msa1383480:CDS |
TTGAAGGAAGGCTGTAATAT+TGG | 0.378244 | tig0020598:-115308 | None:intergenic |
GTGCACGCTATTCAGCAAAT+AGG | 0.379972 | tig0020598:-115260 | None:intergenic |
GTCTTGTCCCTCCATATTCA+TGG | 0.380371 | tig0020598:-113917 | None:intergenic |
ACTAAAATATTCACAACAAT+TGG | 0.391875 | tig0020598:+114963 | Msa1383480:CDS |
CCATCATCATGAATCTTGTT+AGG | 0.396564 | tig0020598:-112363 | None:intergenic |
TCCAGCTTGGGTGAAAGCTT+TGG | 0.397072 | tig0020598:+115285 | Msa1383480:CDS |
CATTATGGTTCCTCTTGGTT+GGG | 0.403721 | tig0020598:+113824 | Msa1383480:CDS |
TGTATGAGGGTTACTCTATC+AGG | 0.406580 | tig0020598:+116016 | Msa1383480:three_prime_UTR |
ACAACTTCAGAACAGAATAT+TGG | 0.410134 | tig0020598:+112237 | Msa1383480:five_prime_UTR |
ATGGTTCCTCTTGGTTGGGT+AGG | 0.416120 | tig0020598:+113828 | Msa1383480:CDS |
GCGTACAGAAGGGAGGGCTC+TGG | 0.421865 | tig0020598:+115695 | Msa1383480:CDS |
GCCAAAGCTTTCACCCAAGC+TGG | 0.426229 | tig0020598:-115286 | None:intergenic |
GGTTCCTCTTGGTTGGGTAG+GGG | 0.426770 | tig0020598:+113830 | Msa1383480:CDS |
TAATTTGATGAGCAGTTTCT+GGG | 0.429639 | tig0020598:-112395 | None:intergenic |
CGGCATGCTTCCTGAGATAC+AGG | 0.431193 | tig0020598:+115019 | Msa1383480:CDS |
GTGGGATGTGTCCTCACTAC+TGG | 0.431656 | tig0020598:+113765 | Msa1383480:CDS |
GCGGCTCTTCTGCCATTCCT+TGG | 0.436629 | tig0020598:+115574 | Msa1383480:CDS |
GTTCCTCTTGGTTGGGTAGG+GGG | 0.437185 | tig0020598:+113831 | Msa1383480:CDS |
AAATGCTTTCATTGTTGGAT+AGG | 0.440493 | tig0020598:+115886 | Msa1383480:three_prime_UTR |
ATCATTGGTTGTTACGTTGA+AGG | 0.441028 | tig0020598:+112143 | Msa1383480:five_prime_UTR |
AATGCAACATATAGTGTATG+AGG | 0.443507 | tig0020598:+116002 | Msa1383480:three_prime_UTR |
GTCTATCTGACCTGTATCTC+AGG | 0.450002 | tig0020598:-115029 | None:intergenic |
CTGTGGTTTCAGTTTACCAT+TGG | 0.450914 | tig0020598:+115175 | Msa1383480:CDS |
TCATTTAGAGTCGGAGTAAG+AGG | 0.457265 | tig0020598:+115523 | Msa1383480:CDS |
GGGACCATTATGGTTCCTCT+TGG | 0.458907 | tig0020598:+113819 | Msa1383480:CDS |
TAGCGTGCACGGTCCAGCTT+GGG | 0.462680 | tig0020598:+115273 | Msa1383480:CDS |
GCTTATGTGCTTGGATACTC+AGG | 0.465982 | tig0020598:+113798 | Msa1383480:CDS |
CCGTACTGCATTGCTATAGC+TGG | 0.473359 | tig0020598:+114506 | Msa1383480:CDS |
CCACCTACGGTAACAACAAT+GGG | 0.475476 | tig0020598:+112324 | Msa1383480:exon |
CCCATTGTTGTTACCGTAGG+TGG | 0.481174 | tig0020598:-112324 | None:intergenic |
CGGAGTAAGAGGTGGTTACC+TGG | 0.486173 | tig0020598:+115534 | Msa1383480:CDS |
TGTATACATTGTCATAGCAT+TGG | 0.487225 | tig0020598:+114613 | Msa1383480:CDS |
ATTAGATACAGAGATCTTGC+TGG | 0.488924 | tig0020598:+113942 | Msa1383480:CDS |
TCATTGGTTGTTACGTTGAA+GGG | 0.493431 | tig0020598:+112144 | Msa1383480:five_prime_UTR |
GGTTACCTTTGCAGGATACT+GGG | 0.495231 | tig0020598:+115216 | Msa1383480:CDS |
GTCAACAGTGCTTATGTGCT+TGG | 0.495512 | tig0020598:+113789 | Msa1383480:CDS |
GGATATCGATATGATATCAT+TGG | 0.496776 | tig0020598:+112128 | Msa1383480:five_prime_UTR |
GACAACTGGCTGCTTAATTG+TGG | 0.498032 | tig0020598:-115134 | None:intergenic |
CGTACAGAAGGGAGGGCTCT+GGG | 0.498171 | tig0020598:+115696 | Msa1383480:CDS |
ATAGCGTGCACGGTCCAGCT+TGG | 0.509613 | tig0020598:+115272 | Msa1383480:CDS |
CAGCAACTGTTGCGGCAGTA+CGG | 0.519965 | tig0020598:+115752 | Msa1383480:CDS |
TTACCCATTGTTGTTACCGT+AGG | 0.520185 | tig0020598:-112327 | None:intergenic |
AGTATTTGGATACTAGATAT+GGG | 0.521407 | tig0020598:+115467 | Msa1383480:CDS |
TTTGAGATCTCTCATACCGC+TGG | 0.525161 | tig0020598:+112201 | Msa1383480:five_prime_UTR |
ACAACAATTGCCACCACCTA+CGG | 0.529612 | tig0020598:+112311 | Msa1383480:five_prime_UTR |
TGGACTTGTACCAATGTACA+TGG | 0.531370 | tig0020598:+115195 | Msa1383480:CDS |
CAAACTATCAAGCGTACAGA+AGG | 0.532535 | tig0020598:+115684 | Msa1383480:CDS |
TATACCGTGTTTCGAGATGA+TGG | 0.534072 | tig0020598:+114470 | Msa1383480:CDS |
AATGCTTATATATAGAAGAC+AGG | 0.537165 | tig0020598:+112176 | Msa1383480:five_prime_UTR |
TGAAAGATGAGGAATGCAAA+TGG | 0.537838 | tig0020598:-114549 | None:intergenic |
CCAACCAAGAGGAACCATAA+TGG | 0.541448 | tig0020598:-113823 | None:intergenic |
GTAATGCAATGACTGATTGA+AGG | 0.542448 | tig0020598:-115324 | None:intergenic |
CTAGTGTTCGCATACAATAC+CGG | 0.545518 | tig0020598:+114999 | Msa1383480:CDS |
CTATGAATGTGTTAAAGGCC+AGG | 0.545650 | tig0020598:-115552 | None:intergenic |
CTCTCGAAATCTCCAAGGAA+TGG | 0.547393 | tig0020598:-115586 | None:intergenic |
GTTACTCTATCAGGTTCTGT+TGG | 0.549480 | tig0020598:+116025 | Msa1383480:three_prime_UTR |
GGAGATTTCGAGAGTCTCAC+AGG | 0.554644 | tig0020598:+115595 | Msa1383480:CDS |
TGCAGATTCATGGTTTCAAG+TGG | 0.558255 | tig0020598:+113746 | Msa1383480:intron |
AAGAACTTGTCATTTAGAGT+CGG | 0.561515 | tig0020598:+115514 | Msa1383480:CDS |
ACCACCTACGGTAACAACAA+TGG | 0.561583 | tig0020598:+112323 | Msa1383480:exon |
GTATCCAAATACTCATACAT+CGG | 0.565959 | tig0020598:-115457 | None:intergenic |
CCTAACAAGATTCATGATGA+TGG | 0.566611 | tig0020598:+112363 | Msa1383480:CDS |
AAAAGGCATATTCTATCACA+TGG | 0.568216 | tig0020598:+114075 | Msa1383480:CDS |
GATCAGTGGAGAAGCAATGA+AGG | 0.571127 | tig0020598:+115489 | Msa1383480:CDS |
ACTTCAGAACAGAATATTGG+TGG | 0.573977 | tig0020598:+112240 | Msa1383480:five_prime_UTR |
ATTGTTGTTACCGTAGGTGG+TGG | 0.574248 | tig0020598:-112321 | None:intergenic |
GTCTATTGCAGCAACTGTTG+CGG | 0.576459 | tig0020598:+115744 | Msa1383480:CDS |
TTGCAAGAATAAATGTAAGC+GGG | 0.576732 | tig0020598:-115633 | None:intergenic |
ACAACAATGGGTAAAGGAAG+AGG | 0.581226 | tig0020598:+112336 | Msa1383480:exon |
GGAACAGTGTAATCTCGAGC+AGG | 0.584265 | tig0020598:-114927 | None:intergenic |
CAATGGTAAACTGAAACCAC+AGG | 0.585074 | tig0020598:-115174 | None:intergenic |
ACGGTAACAACAATGGGTAA+AGG | 0.586107 | tig0020598:+112330 | Msa1383480:exon |
CTGTATCTCAGGAAGCATGC+CGG | 0.587899 | tig0020598:-115018 | None:intergenic |
GAGGCTAAAGAAAACAATGT+TGG | 0.588227 | tig0020598:-115719 | None:intergenic |
TTGGTGCTGTCGATTAAAGA+TGG | 0.589660 | tig0020598:+114632 | Msa1383480:CDS |
GATACTAGATATGGGATCAG+TGG | 0.595270 | tig0020598:+115475 | Msa1383480:CDS |
GCAGATTCATGGTTTCAAGT+GGG | 0.595461 | tig0020598:+113747 | Msa1383480:intron |
TGCAAACCATATGTACTACA+AGG | 0.605665 | tig0020598:+115651 | Msa1383480:CDS |
TGCTATGACAATGTATACAA+AGG | 0.606274 | tig0020598:-114609 | None:intergenic |
ACTGCTCATCAAATTAGCAC+CGG | 0.606729 | tig0020598:+112402 | Msa1383480:CDS |
GATTACACTGTTCCAGAACA+CGG | 0.606932 | tig0020598:+114936 | Msa1383480:CDS |
CACACCATCATCTCGAAACA+CGG | 0.612096 | tig0020598:-114474 | None:intergenic |
CTATGCTCCATGAATATGGA+GGG | 0.617895 | tig0020598:+113910 | Msa1383480:CDS |
TATTTGCTGAATAGCGTGCA+CGG | 0.618514 | tig0020598:+115262 | Msa1383480:CDS |
TATCAAGCGTACAGAAGGGA+GGG | 0.624875 | tig0020598:+115689 | Msa1383480:CDS |
CCAGCTATAGCAATGCAGTA+CGG | 0.625491 | tig0020598:-114506 | None:intergenic |
GCTATGCTCCATGAATATGG+AGG | 0.628110 | tig0020598:+113909 | Msa1383480:CDS |
ATTAGCATAGAGCGAAATCG+CGG | 0.629033 | tig0020598:-113877 | None:intergenic |
CTATCAAGCGTACAGAAGGG+AGG | 0.630934 | tig0020598:+115688 | Msa1383480:CDS |
CACTGTTGACTCCAGTAGTG+AGG | 0.634084 | tig0020598:-113776 | None:intergenic |
GTACATTGGTACAAGTCCAA+TGG | 0.635192 | tig0020598:-115191 | None:intergenic |
ACTCCAAGAGCTGAAAGATG+AGG | 0.637059 | tig0020598:-114560 | None:intergenic |
TTTGCAAGAATAAATGTAAG+CGG | 0.638473 | tig0020598:-115634 | None:intergenic |
TGAGACTCTCGAAATCTCCA+AGG | 0.640360 | tig0020598:-115591 | None:intergenic |
CTTATGTGCTTGGATACTCA+GGG | 0.644689 | tig0020598:+113799 | Msa1383480:CDS |
TTTAGAGTCGGAGTAAGAGG+TGG | 0.647394 | tig0020598:+115526 | Msa1383480:CDS |
TGCAATGACTGATTGAAGGA+AGG | 0.648266 | tig0020598:-115320 | None:intergenic |
ATGCAACATATAGTGTATGA+GGG | 0.651172 | tig0020598:+116003 | Msa1383480:three_prime_UTR |
ATAAGCCCAGTATCCTGCAA+AGG | 0.654594 | tig0020598:-115221 | None:intergenic |
GCAAAGGTAACCATGTACAT+TGG | 0.656882 | tig0020598:-115205 | None:intergenic |
CAGTTGCTGCAATAGACATG+AGG | 0.663766 | tig0020598:-115738 | None:intergenic |
AAACTATCAAGCGTACAGAA+GGG | 0.678840 | tig0020598:+115685 | Msa1383480:CDS |
AAAGGCATATTCTATCACAT+GGG | 0.685218 | tig0020598:+114076 | Msa1383480:CDS |
GGCCTTTAACACATTCATAG+CGG | 0.702664 | tig0020598:+115555 | Msa1383480:CDS |
TGTTGATAAGAATCAACCAG+CGG | 0.728252 | tig0020598:-112217 | None:intergenic |
AGCGGTATGAGAGATCTCAA+AGG | 0.729107 | tig0020598:-112199 | None:intergenic |
AATGGTAAACTGAAACCACA+GGG | 0.745661 | tig0020598:-115173 | None:intergenic |
AGAACATGATGAAATCCCTG+TGG | 0.754118 | tig0020598:+115158 | Msa1383480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTATATTTAATTTTGAGA+GGG | + | tig0020598:112489-112508 | Msa1383480:intron | 10.0% |
!!! | AATAAAAATTTAGAATATAC+AGG | + | tig0020598:113467-113486 | Msa1383480:intron | 10.0% |
!!! | TTAATTAACTAATTTTTTTC+TGG | + | tig0020598:113673-113692 | Msa1383480:intron | 10.0% |
!!! | TGTTTTAATTTAATTTTAAC+TGG | + | tig0020598:113708-113727 | Msa1383480:intron | 10.0% |
!!! | GTTTTAATTTAATTTTAACT+GGG | + | tig0020598:113709-113728 | Msa1383480:intron | 10.0% |
!!! | TTTTCATTTTATTTAATTGT+AGG | + | tig0020598:114050-114069 | Msa1383480:intron | 10.0% |
!!! | AATATACAATTTTAATTGAA+TGG | - | tig0020598:114188-114207 | None:intergenic | 10.0% |
!!! | TTCTATATATAAGCATTTTT+TGG | - | tig0020598:112173-112192 | None:intergenic | 15.0% |
!! | AAAAAGAAAAATTAAGGTTA+TGG | - | tig0020598:112441-112460 | None:intergenic | 15.0% |
!!! | GTTTTATATTTAATTTTGAG+AGG | + | tig0020598:112488-112507 | Msa1383480:intron | 15.0% |
!! | TATGTAAACAAAACAAATAT+AGG | - | tig0020598:112737-112756 | None:intergenic | 15.0% |
!! | GAAAAAAAAAAGTTTAATGA+TGG | + | tig0020598:112953-112972 | Msa1383480:intron | 15.0% |
!!! | TGTGTAAAATAATTTTTCAA+TGG | + | tig0020598:113193-113212 | Msa1383480:intron | 15.0% |
!!! | TTGTATAAAACTTTTCTTTT+TGG | + | tig0020598:113317-113336 | Msa1383480:intron | 15.0% |
!! | TTATTTAATTGTAGGTAAAA+AGG | + | tig0020598:114058-114077 | Msa1383480:intron | 15.0% |
!!! | AGTCCATAATATTTTTTAAT+CGG | - | tig0020598:114303-114322 | None:intergenic | 15.0% |
!! | AATATAGGTAAACTACAAAA+GGG | - | tig0020598:112722-112741 | None:intergenic | 20.0% |
!! | AAATATAGGTAAACTACAAA+AGG | - | tig0020598:112723-112742 | None:intergenic | 20.0% |
!!! | ATTCTAAATGTTTTGATAGA+TGG | - | tig0020598:113000-113019 | None:intergenic | 20.0% |
!! | ATCTATCAAAACATTTAGAA+TGG | + | tig0020598:112999-113018 | Msa1383480:intron | 20.0% |
!!! | AACTGAAGAAGTATATTAAA+GGG | - | tig0020598:113655-113674 | None:intergenic | 20.0% |
!!! | TAACTGAAGAAGTATATTAA+AGG | - | tig0020598:113656-113675 | None:intergenic | 20.0% |
!!! | TTAATTTAATTTTAACTGGG+TGG | + | tig0020598:113712-113731 | Msa1383480:intron | 20.0% |
!!! | AATCTTTTCATGATAAATAC+TGG | + | tig0020598:114113-114132 | Msa1383480:CDS | 20.0% |
!! | TTTGAAAGTAAGAGAAATTT+AGG | + | tig0020598:114160-114179 | Msa1383480:intron | 20.0% |
!! | GTTATTTAGTAAAGAAAGTT+TGG | - | tig0020598:114257-114276 | None:intergenic | 20.0% |
!!! | TTGAGCATTATTTTTTGTAA+AGG | + | tig0020598:114326-114345 | Msa1383480:intron | 20.0% |
!!! | ATTTTTTGTAAAGGACTAAA+AGG | + | tig0020598:114335-114354 | Msa1383480:intron | 20.0% |
!!! | TTTAGATAAGTGGATTATTA+TGG | - | tig0020598:114743-114762 | None:intergenic | 20.0% |
!! | ACTAAAATATTCACAACAAT+TGG | + | tig0020598:114963-114982 | Msa1383480:CDS | 20.0% |
!! | TGAAACTTAATATGAAGATA+TGG | - | tig0020598:115067-115086 | None:intergenic | 20.0% |
!!! | ACTTATTTTGTATTTTTACC+TGG | + | tig0020598:115393-115412 | Msa1383480:intron | 20.0% |
!!! | ATTTTAAATGCTTTCATTGT+TGG | + | tig0020598:115881-115900 | Msa1383480:three_prime_UTR | 20.0% |
! | AATGCTTATATATAGAAGAC+AGG | + | tig0020598:112176-112195 | Msa1383480:five_prime_UTR | 25.0% |
! | GAAGAAGTAGCTTAAATTTA+CGG | + | tig0020598:112264-112283 | Msa1383480:five_prime_UTR | 25.0% |
! | CGTACTATAATATTTCAACA+AGG | - | tig0020598:112581-112600 | None:intergenic | 25.0% |
!! | ACTGAAGAAGTATATTAAAG+GGG | - | tig0020598:113654-113673 | None:intergenic | 25.0% |
! | GGATATGTATATGGTAAATA+AGG | + | tig0020598:113963-113982 | Msa1383480:intron | 25.0% |
!! | AGATTTCTAATGTGTTTTGT+TGG | - | tig0020598:113989-114008 | None:intergenic | 25.0% |
!!! | AAATACTGGTTACATCATTT+TGG | + | tig0020598:114127-114146 | Msa1383480:CDS | 25.0% |
!!! | AAGTTTGGATTAGTTTTTGT+CGG | - | tig0020598:114242-114261 | None:intergenic | 25.0% |
!!! | CCATAATATTTTTTAATCGG+AGG | - | tig0020598:114300-114319 | None:intergenic | 25.0% |
! | CCTCCGATTAAAAAATATTA+TGG | + | tig0020598:114297-114316 | Msa1383480:intron | 25.0% |
!! | TATTTGTTAATGTAACTTGC+AGG | + | tig0020598:115111-115130 | Msa1383480:intron | 25.0% |
! | AGTATTTGGATACTAGATAT+GGG | + | tig0020598:115467-115486 | Msa1383480:CDS | 25.0% |
! | TTTGCAAGAATAAATGTAAG+CGG | - | tig0020598:115637-115656 | None:intergenic | 25.0% |
GGATATCGATATGATATCAT+TGG | + | tig0020598:112128-112147 | Msa1383480:five_prime_UTR | 30.0% | |
ACAACTTCAGAACAGAATAT+TGG | + | tig0020598:112237-112256 | Msa1383480:five_prime_UTR | 30.0% | |
TAATTTGATGAGCAGTTTCT+GGG | - | tig0020598:112398-112417 | None:intergenic | 30.0% | |
TTCGAAAATTCCCATGTTAA+TGG | + | tig0020598:112532-112551 | Msa1383480:intron | 30.0% | |
TATAGTACGACATATTGAAG+AGG | + | tig0020598:112592-112611 | Msa1383480:intron | 30.0% | |
!! | TTTGTTTTCCTTTCCAAACA+AGG | + | tig0020598:112667-112686 | Msa1383480:intron | 30.0% |
! | TTGTTTTCCTTTCCAAACAA+GGG | + | tig0020598:112668-112687 | Msa1383480:intron | 30.0% |
!! | TGTACGTGTCGATTATTAAA+AGG | + | tig0020598:112864-112883 | Msa1383480:intron | 30.0% |
!! | AATATTTGCTATTTGCAGAG+TGG | - | tig0020598:113117-113136 | None:intergenic | 30.0% |
CACATATCACAGCTTATTAT+TGG | - | tig0020598:113365-113384 | None:intergenic | 30.0% | |
ATAATAAGCTGTGATATGTG+TGG | + | tig0020598:113365-113384 | Msa1383480:intron | 30.0% | |
TGGAAACAACAAGTTATTCA+AGG | - | tig0020598:113422-113441 | None:intergenic | 30.0% | |
TATTCACTCTTGAGAAGAAA+CGG | + | tig0020598:113620-113639 | Msa1383480:intron | 30.0% | |
! | CTGAAGAAGTATATTAAAGG+GGG | - | tig0020598:113653-113672 | None:intergenic | 30.0% |
!!! | ATTTTAACTGGGTGGTAATT+TGG | + | tig0020598:113720-113739 | Msa1383480:intron | 30.0% |
!!! | AATTTGGTTTTGCAGATTCA+TGG | + | tig0020598:113736-113755 | Msa1383480:intron | 30.0% |
! | AAAAGGCATATTCTATCACA+TGG | + | tig0020598:114075-114094 | Msa1383480:CDS | 30.0% |
! | AAAGGCATATTCTATCACAT+GGG | + | tig0020598:114076-114095 | Msa1383480:CDS | 30.0% |
!!! | AGTTTGGATTAGTTTTTGTC+GGG | - | tig0020598:114241-114260 | None:intergenic | 30.0% |
!!! | GATCCTTTAAAATTTTCTCG+CGG | - | tig0020598:114362-114381 | None:intergenic | 30.0% |
TGCTATGACAATGTATACAA+AGG | - | tig0020598:114612-114631 | None:intergenic | 30.0% | |
TGTATACATTGTCATAGCAT+TGG | + | tig0020598:114613-114632 | Msa1383480:CDS | 30.0% | |
! | CAATTGGTTTAAAGAACTGA+TGG | - | tig0020598:114719-114738 | None:intergenic | 30.0% |
!! | AGTGGATTATTATGGACAAT+TGG | - | tig0020598:114735-114754 | None:intergenic | 30.0% |
CTGAGTAAACTTTAGATAAG+TGG | - | tig0020598:114753-114772 | None:intergenic | 30.0% | |
AGTTTACTCAGTTATACACT+AGG | + | tig0020598:114762-114781 | Msa1383480:intron | 30.0% | |
GAAATAGAACACAGGTTATT+AGG | - | tig0020598:115419-115438 | None:intergenic | 30.0% | |
GTATCCAAATACTCATACAT+CGG | - | tig0020598:115460-115479 | None:intergenic | 30.0% | |
GAGTATTTGGATACTAGATA+TGG | + | tig0020598:115466-115485 | Msa1383480:CDS | 30.0% | |
! | AAGAACTTGTCATTTAGAGT+CGG | + | tig0020598:115514-115533 | Msa1383480:CDS | 30.0% |
TTGCAAGAATAAATGTAAGC+GGG | - | tig0020598:115636-115655 | None:intergenic | 30.0% | |
AAATGCTTTCATTGTTGGAT+AGG | + | tig0020598:115886-115905 | Msa1383480:three_prime_UTR | 30.0% | |
AATGCAACATATAGTGTATG+AGG | + | tig0020598:116002-116021 | Msa1383480:three_prime_UTR | 30.0% | |
ATGCAACATATAGTGTATGA+GGG | + | tig0020598:116003-116022 | Msa1383480:three_prime_UTR | 30.0% | |
! | ATCATTGGTTGTTACGTTGA+AGG | + | tig0020598:112143-112162 | Msa1383480:five_prime_UTR | 35.0% |
! | TCATTGGTTGTTACGTTGAA+GGG | + | tig0020598:112144-112163 | Msa1383480:five_prime_UTR | 35.0% |
! | TGTTGATAAGAATCAACCAG+CGG | - | tig0020598:112220-112239 | None:intergenic | 35.0% |
ACTTCAGAACAGAATATTGG+TGG | + | tig0020598:112240-112259 | Msa1383480:five_prime_UTR | 35.0% | |
CCATCATCATGAATCTTGTT+AGG | - | tig0020598:112366-112385 | None:intergenic | 35.0% | |
CCTAACAAGATTCATGATGA+TGG | + | tig0020598:112363-112382 | Msa1383480:CDS | 35.0% | |
CTAATTTGATGAGCAGTTTC+TGG | - | tig0020598:112399-112418 | None:intergenic | 35.0% | |
TTATGGTGTGAGATACAAAC+CGG | - | tig0020598:112424-112443 | None:intergenic | 35.0% | |
ATTCCCATGTTAATGGAACA+TGG | + | tig0020598:112539-112558 | Msa1383480:intron | 35.0% | |
ACTCCATGTTCCATTAACAT+GGG | - | tig0020598:112545-112564 | None:intergenic | 35.0% | |
! | TAATTTGCCCTTGTTTGGAA+AGG | - | tig0020598:112678-112697 | None:intergenic | 35.0% |
GCAGAATCAAAATTCAGTCA+TGG | - | tig0020598:112776-112795 | None:intergenic | 35.0% | |
!! | CTTTTCTTTTTGGAGAGTGT+CGG | + | tig0020598:113327-113346 | Msa1383480:intron | 35.0% |
GTGAATATGAATGTTACGCA+TGG | - | tig0020598:113442-113461 | None:intergenic | 35.0% | |
TTAGTGCCAGGAAATCAAAA+GGG | - | tig0020598:113579-113598 | None:intergenic | 35.0% | |
ATTAGTGCCAGGAAATCAAA+AGG | - | tig0020598:113580-113599 | None:intergenic | 35.0% | |
AGAAAACTGATATTAGTGCC+AGG | - | tig0020598:113591-113610 | None:intergenic | 35.0% | |
ATTGCTATGCTCCATGAATA+TGG | + | tig0020598:113906-113925 | Msa1383480:CDS | 35.0% | |
ATTAGATACAGAGATCTTGC+TGG | + | tig0020598:113942-113961 | Msa1383480:CDS | 35.0% | |
GATCTTGCTGGATATGTATA+TGG | + | tig0020598:113954-113973 | Msa1383480:CDS | 35.0% | |
!!! | GTAGTGACTTTTTTTGACAC+CGG | + | tig0020598:114419-114438 | Msa1383480:intron | 35.0% |
TGAAAGATGAGGAATGCAAA+TGG | - | tig0020598:114552-114571 | None:intergenic | 35.0% | |
TGGTTTAAAGAACTGATGGT+AGG | - | tig0020598:114715-114734 | None:intergenic | 35.0% | |
!!! | ATTTTAGTTACACCGTGTTC+TGG | - | tig0020598:114951-114970 | None:intergenic | 35.0% |
TTCATCATGTTCTTGACAAC+TGG | - | tig0020598:115151-115170 | None:intergenic | 35.0% | |
AATGGTAAACTGAAACCACA+GGG | - | tig0020598:115176-115195 | None:intergenic | 35.0% | |
TTGAAGGAAGGCTGTAATAT+TGG | - | tig0020598:115311-115330 | None:intergenic | 35.0% | |
GTAATGCAATGACTGATTGA+AGG | - | tig0020598:115327-115346 | None:intergenic | 35.0% | |
ATCTGTCAGAAATAGAACAC+AGG | - | tig0020598:115427-115446 | None:intergenic | 35.0% | |
AAGTCCGATGTATGAGTATT+TGG | + | tig0020598:115453-115472 | Msa1383480:CDS | 35.0% | |
TGCAAACCATATGTACTACA+AGG | + | tig0020598:115651-115670 | Msa1383480:CDS | 35.0% | |
TCTTTGCCTTGTAGTACATA+TGG | - | tig0020598:115660-115679 | None:intergenic | 35.0% | |
AAACTATCAAGCGTACAGAA+GGG | + | tig0020598:115685-115704 | Msa1383480:CDS | 35.0% | |
GAGGCTAAAGAAAACAATGT+TGG | - | tig0020598:115722-115741 | None:intergenic | 35.0% | |
! | TTACCCATTGTTGTTACCGT+AGG | - | tig0020598:112330-112349 | None:intergenic | 40.0% |
ACGGTAACAACAATGGGTAA+AGG | + | tig0020598:112330-112349 | Msa1383480:exon | 40.0% | |
ACAACAATGGGTAAAGGAAG+AGG | + | tig0020598:112336-112355 | Msa1383480:exon | 40.0% | |
ACTGCTCATCAAATTAGCAC+CGG | + | tig0020598:112402-112421 | Msa1383480:CDS | 40.0% | |
GACTCCATGTTCCATTAACA+TGG | - | tig0020598:112546-112565 | None:intergenic | 40.0% | |
TTAATGGAACATGGAGTCAG+AGG | + | tig0020598:112548-112567 | Msa1383480:intron | 40.0% | |
! | GAGACTAATTTGCCCTTGTT+TGG | - | tig0020598:112683-112702 | None:intergenic | 40.0% |
!! | ATTTGCTATTTGCAGAGTGG+TGG | - | tig0020598:113114-113133 | None:intergenic | 40.0% |
TAGTGCCAGGAAATCAAAAG+GGG | - | tig0020598:113578-113597 | None:intergenic | 40.0% | |
TGCAGATTCATGGTTTCAAG+TGG | + | tig0020598:113746-113765 | Msa1383480:intron | 40.0% | |
! | GCAGATTCATGGTTTCAAGT+GGG | + | tig0020598:113747-113766 | Msa1383480:intron | 40.0% |
CTTATGTGCTTGGATACTCA+GGG | + | tig0020598:113799-113818 | Msa1383480:CDS | 40.0% | |
CATTATGGTTCCTCTTGGTT+GGG | + | tig0020598:113824-113843 | Msa1383480:CDS | 40.0% | |
ATTAGCATAGAGCGAAATCG+CGG | - | tig0020598:113880-113899 | None:intergenic | 40.0% | |
CTATGCTCCATGAATATGGA+GGG | + | tig0020598:113910-113929 | Msa1383480:CDS | 40.0% | |
!! | ACTGGTTACATCATTTTGGC+TGG | + | tig0020598:114131-114150 | Msa1383480:CDS | 40.0% |
TTTGTCGGGACTAAATTGAG+TGG | - | tig0020598:114227-114246 | None:intergenic | 40.0% | |
! | GGACCGCGAGAAAATTTTAA+AGG | + | tig0020598:114356-114375 | Msa1383480:intron | 40.0% |
TATACCGTGTTTCGAGATGA+TGG | + | tig0020598:114470-114489 | Msa1383480:CDS | 40.0% | |
ATTCCTCATCTTTCAGCTCT+TGG | + | tig0020598:114557-114576 | Msa1383480:CDS | 40.0% | |
ATCTTTCAGCTCTTGGAGTT+TGG | + | tig0020598:114564-114583 | Msa1383480:CDS | 40.0% | |
!! | TTGGTGCTGTCGATTAAAGA+TGG | + | tig0020598:114632-114651 | Msa1383480:CDS | 40.0% |
GATTACACTGTTCCAGAACA+CGG | + | tig0020598:114936-114955 | Msa1383480:CDS | 40.0% | |
CTAGTGTTCGCATACAATAC+CGG | + | tig0020598:114999-115018 | Msa1383480:CDS | 40.0% | |
AGAACATGATGAAATCCCTG+TGG | + | tig0020598:115158-115177 | Msa1383480:CDS | 40.0% | |
CAATGGTAAACTGAAACCAC+AGG | - | tig0020598:115177-115196 | None:intergenic | 40.0% | |
CTGTGGTTTCAGTTTACCAT+TGG | + | tig0020598:115175-115194 | Msa1383480:CDS | 40.0% | |
GTACATTGGTACAAGTCCAA+TGG | - | tig0020598:115194-115213 | None:intergenic | 40.0% | |
TGGACTTGTACCAATGTACA+TGG | + | tig0020598:115195-115214 | Msa1383480:CDS | 40.0% | |
GCAAAGGTAACCATGTACAT+TGG | - | tig0020598:115208-115227 | None:intergenic | 40.0% | |
ATGTACATGGTTACCTTTGC+AGG | + | tig0020598:115208-115227 | Msa1383480:CDS | 40.0% | |
! | TATTTGCTGAATAGCGTGCA+CGG | + | tig0020598:115262-115281 | Msa1383480:CDS | 40.0% |
TGCAATGACTGATTGAAGGA+AGG | - | tig0020598:115323-115342 | None:intergenic | 40.0% | |
GATACTAGATATGGGATCAG+TGG | + | tig0020598:115475-115494 | Msa1383480:CDS | 40.0% | |
! | TCATTTAGAGTCGGAGTAAG+AGG | + | tig0020598:115523-115542 | Msa1383480:CDS | 40.0% |
CTATGAATGTGTTAAAGGCC+AGG | - | tig0020598:115555-115574 | None:intergenic | 40.0% | |
GGCCTTTAACACATTCATAG+CGG | + | tig0020598:115555-115574 | Msa1383480:CDS | 40.0% | |
AGCCGCTATGAATGTGTTAA+AGG | - | tig0020598:115560-115579 | None:intergenic | 40.0% | |
CAAACTATCAAGCGTACAGA+AGG | + | tig0020598:115684-115703 | Msa1383480:CDS | 40.0% | |
TGTATGAGGGTTACTCTATC+AGG | + | tig0020598:116016-116035 | Msa1383480:three_prime_UTR | 40.0% | |
GTTACTCTATCAGGTTCTGT+TGG | + | tig0020598:116025-116044 | Msa1383480:three_prime_UTR | 40.0% | |
AGCGGTATGAGAGATCTCAA+AGG | - | tig0020598:112202-112221 | None:intergenic | 45.0% | |
! | TTTGAGATCTCTCATACCGC+TGG | + | tig0020598:112201-112220 | Msa1383480:five_prime_UTR | 45.0% |
ACAACAATTGCCACCACCTA+CGG | + | tig0020598:112311-112330 | Msa1383480:five_prime_UTR | 45.0% | |
! | ATTGTTGTTACCGTAGGTGG+TGG | - | tig0020598:112324-112343 | None:intergenic | 45.0% |
ACCACCTACGGTAACAACAA+TGG | + | tig0020598:112323-112342 | Msa1383480:exon | 45.0% | |
CCACCTACGGTAACAACAAT+GGG | + | tig0020598:112324-112343 | Msa1383480:exon | 45.0% | |
AGTGCCAGGAAATCAAAAGG+GGG | - | tig0020598:113577-113596 | None:intergenic | 45.0% | |
GTCAACAGTGCTTATGTGCT+TGG | + | tig0020598:113789-113808 | Msa1383480:CDS | 45.0% | |
GCTTATGTGCTTGGATACTC+AGG | + | tig0020598:113798-113817 | Msa1383480:CDS | 45.0% | |
TGGATACTCAGGGACCATTA+TGG | + | tig0020598:113809-113828 | Msa1383480:CDS | 45.0% | |
CCAACCAAGAGGAACCATAA+TGG | - | tig0020598:113826-113845 | None:intergenic | 45.0% | |
CCATTATGGTTCCTCTTGGT+TGG | + | tig0020598:113823-113842 | Msa1383480:CDS | 45.0% | |
GCTATGCTCCATGAATATGG+AGG | + | tig0020598:113909-113928 | Msa1383480:CDS | 45.0% | |
GTCTTGTCCCTCCATATTCA+TGG | - | tig0020598:113920-113939 | None:intergenic | 45.0% | |
CACCACAGTGAACGTAAAAC+CGG | - | tig0020598:114441-114460 | None:intergenic | 45.0% | |
! | TTTTACGTTCACTGTGGTGC+AGG | + | tig0020598:114442-114461 | Msa1383480:intron | 45.0% |
CACACCATCATCTCGAAACA+CGG | - | tig0020598:114477-114496 | None:intergenic | 45.0% | |
CCAGCTATAGCAATGCAGTA+CGG | - | tig0020598:114509-114528 | None:intergenic | 45.0% | |
ACTCCAAGAGCTGAAAGATG+AGG | - | tig0020598:114563-114582 | None:intergenic | 45.0% | |
TTCAGCTCTTGGAGTTTGGT+TGG | + | tig0020598:114568-114587 | Msa1383480:CDS | 45.0% | |
TCAGCTCTTGGAGTTTGGTT+GGG | + | tig0020598:114569-114588 | Msa1383480:CDS | 45.0% | |
CTAACCAACAATGCATTGCC+AGG | + | tig0020598:114894-114913 | Msa1383480:intron | 45.0% | |
CATTCCTGGCAATGCATTGT+TGG | - | tig0020598:114901-114920 | None:intergenic | 45.0% | |
GTCTATCTGACCTGTATCTC+AGG | - | tig0020598:115032-115051 | None:intergenic | 45.0% | |
GACAACTGGCTGCTTAATTG+TGG | - | tig0020598:115137-115156 | None:intergenic | 45.0% | |
TGGTTACCTTTGCAGGATAC+TGG | + | tig0020598:115215-115234 | Msa1383480:CDS | 45.0% | |
GGTTACCTTTGCAGGATACT+GGG | + | tig0020598:115216-115235 | Msa1383480:CDS | 45.0% | |
ATAAGCCCAGTATCCTGCAA+AGG | - | tig0020598:115224-115243 | None:intergenic | 45.0% | |
TTTGCAGGATACTGGGCTTA+TGG | + | tig0020598:115223-115242 | Msa1383480:CDS | 45.0% | |
GTGCACGCTATTCAGCAAAT+AGG | - | tig0020598:115263-115282 | None:intergenic | 45.0% | |
AGAACACAGGTTATTAGGCC+AGG | - | tig0020598:115414-115433 | None:intergenic | 45.0% | |
GATCAGTGGAGAAGCAATGA+AGG | + | tig0020598:115489-115508 | Msa1383480:CDS | 45.0% | |
! | TTTAGAGTCGGAGTAAGAGG+TGG | + | tig0020598:115526-115545 | Msa1383480:CDS | 45.0% |
CTCTCGAAATCTCCAAGGAA+TGG | - | tig0020598:115589-115608 | None:intergenic | 45.0% | |
TGAGACTCTCGAAATCTCCA+AGG | - | tig0020598:115594-115613 | None:intergenic | 45.0% | |
TATCAAGCGTACAGAAGGGA+GGG | + | tig0020598:115689-115708 | Msa1383480:CDS | 45.0% | |
CAGTTGCTGCAATAGACATG+AGG | - | tig0020598:115741-115760 | None:intergenic | 45.0% | |
GTCTATTGCAGCAACTGTTG+CGG | + | tig0020598:115744-115763 | Msa1383480:CDS | 45.0% | |
!! | TTATTTAAAAAGAAAAATTA+AGG | - | tig0020598:112447-112466 | None:intergenic | 5.0% |
!!! | AACAAAATAATATTTTTTTT+TGG | - | tig0020598:112845-112864 | None:intergenic | 5.0% |
! | CCCATTGTTGTTACCGTAGG+TGG | - | tig0020598:112327-112346 | None:intergenic | 50.0% |
GGAAGAACATGACGCACATG+CGG | + | tig0020598:112613-112632 | Msa1383480:intron | 50.0% | |
!!! | ACACCCCCCTTTTGATTTCC+TGG | + | tig0020598:113570-113589 | Msa1383480:intron | 50.0% |
GTGCCAGGAAATCAAAAGGG+GGG | - | tig0020598:113576-113595 | None:intergenic | 50.0% | |
!! | CACTGTTGACTCCAGTAGTG+AGG | - | tig0020598:113779-113798 | None:intergenic | 50.0% |
GGGACCATTATGGTTCCTCT+TGG | + | tig0020598:113819-113838 | Msa1383480:CDS | 50.0% | |
ATGGTTCCTCTTGGTTGGGT+AGG | + | tig0020598:113828-113847 | Msa1383480:CDS | 50.0% | |
TGGTTCCTCTTGGTTGGGTA+GGG | + | tig0020598:113829-113848 | Msa1383480:CDS | 50.0% | |
!!! | CACCGGTTTTACGTTCACTG+TGG | + | tig0020598:114436-114455 | Msa1383480:intron | 50.0% |
CCGTACTGCATTGCTATAGC+TGG | + | tig0020598:114506-114525 | Msa1383480:CDS | 50.0% | |
CGAGCAGGTGAATTCATTCC+TGG | - | tig0020598:114915-114934 | None:intergenic | 50.0% | |
GGAACAGTGTAATCTCGAGC+AGG | - | tig0020598:114930-114949 | None:intergenic | 50.0% | |
! | CTGTATCTCAGGAAGCATGC+CGG | - | tig0020598:115021-115040 | None:intergenic | 50.0% |
TCCAGCTTGGGTGAAAGCTT+TGG | + | tig0020598:115285-115304 | Msa1383480:CDS | 50.0% | |
GGAGATTTCGAGAGTCTCAC+AGG | + | tig0020598:115595-115614 | Msa1383480:CDS | 50.0% | |
CTATCAAGCGTACAGAAGGG+AGG | + | tig0020598:115688-115707 | Msa1383480:CDS | 50.0% | |
GTGGGATGTGTCCTCACTAC+TGG | + | tig0020598:113765-113784 | Msa1383480:CDS | 55.0% | |
GGTTCCTCTTGGTTGGGTAG+GGG | + | tig0020598:113830-113849 | Msa1383480:CDS | 55.0% | |
GTTCCTCTTGGTTGGGTAGG+GGG | + | tig0020598:113831-113850 | Msa1383480:CDS | 55.0% | |
CGGCATGCTTCCTGAGATAC+AGG | + | tig0020598:115019-115038 | Msa1383480:CDS | 55.0% | |
GCCAAAGCTTTCACCCAAGC+TGG | - | tig0020598:115289-115308 | None:intergenic | 55.0% | |
CGGAGTAAGAGGTGGTTACC+TGG | + | tig0020598:115534-115553 | Msa1383480:CDS | 55.0% | |
CAGCAACTGTTGCGGCAGTA+CGG | + | tig0020598:115752-115771 | Msa1383480:CDS | 55.0% | |
ACACCCCCTACCCAACCAAG+AGG | - | tig0020598:113837-113856 | None:intergenic | 60.0% | |
! | GGTTGGGTAGGGGGTGTAGT+TGG | + | tig0020598:113840-113859 | Msa1383480:CDS | 60.0% |
ATAGCGTGCACGGTCCAGCT+TGG | + | tig0020598:115272-115291 | Msa1383480:CDS | 60.0% | |
TAGCGTGCACGGTCCAGCTT+GGG | + | tig0020598:115273-115292 | Msa1383480:CDS | 60.0% | |
GCGGCTCTTCTGCCATTCCT+TGG | + | tig0020598:115574-115593 | Msa1383480:CDS | 60.0% | |
CGTACAGAAGGGAGGGCTCT+GGG | + | tig0020598:115696-115715 | Msa1383480:CDS | 60.0% | |
GCGTACAGAAGGGAGGGCTC+TGG | + | tig0020598:115695-115714 | Msa1383480:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0020598 | gene | 112109 | 116086 | 112109 | ID=Msa1383480;Name=Msa1383480 |
tig0020598 | mRNA | 112109 | 116086 | 112109 | ID=Msa1383480-mRNA-1;Parent=Msa1383480;Name=Msa1383480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=233|1|1|1|1|1|7|264|436 |
tig0020598 | exon | 112109 | 112423 | 112109 | ID=Msa1383480-mRNA-1:exon:8581;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 113751 | 113975 | 113751 | ID=Msa1383480-mRNA-1:exon:8582;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 114072 | 114166 | 114072 | ID=Msa1383480-mRNA-1:exon:8583;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 114464 | 114653 | 114464 | ID=Msa1383480-mRNA-1:exon:8584;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 114916 | 115040 | 114916 | ID=Msa1383480-mRNA-1:exon:8585;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 115133 | 115348 | 115133 | ID=Msa1383480-mRNA-1:exon:8586;Parent=Msa1383480-mRNA-1 |
tig0020598 | exon | 115445 | 116086 | 115445 | ID=Msa1383480-mRNA-1:exon:8587;Parent=Msa1383480-mRNA-1 |
tig0020598 | five_prime_UTR | 112109 | 112341 | 112109 | ID=Msa1383480-mRNA-1:five_prime_utr;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 112342 | 112423 | 112342 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 113751 | 113975 | 113751 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 114072 | 114166 | 114072 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 114464 | 114653 | 114464 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 114916 | 115040 | 114916 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 115133 | 115348 | 115133 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | CDS | 115445 | 115822 | 115445 | ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1 |
tig0020598 | three_prime_UTR | 115823 | 116086 | 115823 | ID=Msa1383480-mRNA-1:three_prime_utr;Parent=Msa1383480-mRNA-1 |
Gene Sequence |
Protein sequence |