AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1383480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383480 MtrunA17_Chr3g0112971 96.789 436 14 0 1 436 1 436 0.0 858
Msa1383480 MtrunA17_Chr5g0436281 77.285 383 87 0 54 436 1 383 0.0 626
Msa1383480 MtrunA17_Chr4g0058161 40.732 437 255 4 1 436 17 450 2.46e-113 340
Msa1383480 MtrunA17_Chr1g0184721 32.152 395 251 7 54 436 51 440 4.29e-51 178
Msa1383480 MtrunA17_Chr1g0198081 29.954 434 269 11 25 435 59 480 2.91e-45 163
Msa1383480 MtrunA17_Chr8g0387941 27.918 437 269 12 26 433 28 447 6.83e-44 159
Msa1383480 MtrunA17_Chr4g0027241 29.680 438 265 13 26 436 41 462 1.90e-41 152
Msa1383480 MtrunA17_Chr6g0459011 29.620 395 245 13 54 429 13 393 3.42e-26 109
Msa1383480 MtrunA17_Chr6g0458931 26.395 466 287 17 5 434 10 455 1.39e-25 108
Msa1383480 MtrunA17_Chr5g0422741 28.535 396 256 11 54 433 54 438 1.05e-24 105
Msa1383480 MtrunA17_Chr2g0331721 26.000 450 277 15 20 433 31 460 1.40e-24 105
Msa1383480 MtrunA17_Chr6g0459021 27.617 449 292 14 2 434 16 447 4.13e-24 103
Msa1383480 MtrunA17_Chr1g0198531 27.157 394 264 8 54 433 52 436 6.71e-24 103
Msa1383480 MtrunA17_Chr4g0057851 26.108 406 280 10 39 432 24 421 2.01e-23 101
Msa1383480 MtrunA17_Chr8g0376991 25.500 400 265 14 54 434 51 436 1.65e-22 99.4
Msa1383480 MtrunA17_Chr1g0198541 27.778 396 259 12 54 433 52 436 4.45e-22 98.2
Msa1383480 MtrunA17_Chr3g0122921 26.281 449 276 16 12 434 9 428 5.20e-22 97.8
Msa1383480 MtrunA17_Chr2g0328081 26.923 390 273 8 54 434 42 428 8.88e-22 97.1
Msa1383480 MtrunA17_Chr3g0130641 25.376 465 300 15 7 435 22 475 2.39e-21 96.3
Msa1383480 MtrunA17_Chr6g0458921 27.877 391 268 10 54 434 42 428 4.05e-21 95.1
Msa1383480 MtrunA17_Chr8g0384661 25.918 463 287 17 12 433 43 490 5.59e-21 95.1
Msa1383480 MtrunA17_Chr3g0125091 26.767 467 286 16 9 433 24 476 5.73e-21 95.1
Msa1383480 MtrunA17_Chr3g0077651 24.938 401 264 12 57 434 83 469 8.76e-21 94.4
Msa1383480 MtrunA17_Chr3g0140761 25.160 469 302 17 8 433 16 478 2.37e-20 93.2
Msa1383480 MtrunA17_Chr3g0130651 26.794 418 258 16 9 390 16 421 7.25e-20 91.7
Msa1383480 MtrunA17_Chr6g0459031 28.244 393 264 12 54 434 42 428 8.49e-20 91.3
Msa1383480 MtrunA17_Chr1g0159761 27.251 422 257 15 9 390 17 428 9.70e-20 91.3
Msa1383480 MtrunA17_Chr7g0230011 28.117 409 243 15 54 434 58 443 1.39e-19 90.5
Msa1383480 MtrunA17_Chr4g0037201 25.678 479 289 19 7 433 45 508 1.80e-19 90.9
Msa1383480 MtrunA17_Chr3g0125081 26.652 469 289 16 9 436 24 478 2.25e-19 90.1
Msa1383480 MtrunA17_Chr1g0206871 25.751 466 276 18 27 435 17 469 2.62e-19 90.1
Msa1383480 MtrunA17_Chr1g0146491 25.902 471 296 20 8 433 6 468 5.25e-19 89.0
Msa1383480 MtrunA17_Chr3g0125101 26.526 426 256 16 57 436 65 479 5.34e-19 89.0
Msa1383480 MtrunA17_Chr3g0143701 25.833 360 242 12 57 395 115 470 3.23e-16 80.9
Msa1383480 MtrunA17_Chr4g0038711 25.062 403 254 16 57 424 101 490 1.02e-15 79.3
Msa1383480 MtrunA17_Chr4g0027261 30.500 200 113 6 250 436 1 187 1.29e-15 75.1
Msa1383480 MtrunA17_Chr6g0459001 25.986 431 265 12 54 434 50 476 1.38e-15 78.6
Msa1383480 MtrunA17_Chr1g0146391 23.095 420 279 13 54 434 40 454 2.64e-15 77.8
Msa1383480 MtrunA17_Chr3g0103231 25.858 379 225 15 57 390 54 421 8.89e-15 76.3
Msa1383480 MtrunA17_Chr2g0293331 23.990 421 268 15 57 434 43 454 1.23e-14 75.5
Msa1383480 MtrunA17_Chr5g0430221 68.085 47 15 0 146 192 1 47 2.02e-14 70.5
Msa1383480 MtrunA17_Chr5g0406331 25.521 384 252 13 37 396 99 472 2.24e-14 75.1
Msa1383480 MtrunA17_Chr5g0406351 25.459 381 249 13 37 392 120 490 1.81e-13 72.4
Msa1383480 MtrunA17_Chr3g0103211 23.592 373 241 15 57 390 54 421 4.25e-13 70.9
Msa1383480 MtrunA17_Chr5g0447221 23.765 425 271 17 37 420 41 453 4.28e-13 70.9
Msa1383480 MtrunA17_Chr3g0103221 25.393 382 223 18 57 390 61 428 1.10e-12 69.7
Msa1383480 MtrunA17_Chr1g0146411 23.718 468 311 18 3 433 11 469 1.15e-12 69.7
Msa1383480 MtrunA17_Chr1g0206831 28.000 300 172 11 166 432 51 339 3.83e-12 67.4
Msa1383480 MtrunA17_Chr3g0103271 23.575 386 255 13 37 385 39 421 1.83e-11 65.9
Msa1383480 MtrunA17_Chr3g0140531 23.474 426 264 15 57 433 55 467 8.00e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383480 AT2G39890.2 70.998 431 123 1 6 436 14 442 0.0 653
Msa1383480 AT2G39890.1 70.998 431 123 1 6 436 14 442 0.0 653
Msa1383480 AT3G55740.1 71.496 421 120 0 16 436 19 439 0.0 645
Msa1383480 AT2G36590.1 68.287 432 133 1 9 436 5 436 0.0 622
Msa1383480 AT2G39890.3 70.757 383 112 0 54 436 1 383 0.0 583
Msa1383480 AT3G55740.2 70.496 383 113 0 54 436 1 383 0.0 575
Msa1383480 AT3G55740.3 70.496 383 113 0 54 436 1 383 0.0 575
Msa1383480 AT2G36590.2 67.937 315 97 1 9 319 5 319 8.46e-164 464
Msa1383480 AT1G08230.2 29.806 463 283 13 2 436 3 451 8.40e-45 162
Msa1383480 AT5G41800.1 27.397 438 274 12 26 435 27 448 4.73e-37 141
Msa1383480 AT1G08230.4 31.707 328 198 8 127 436 13 332 9.33e-34 129
Msa1383480 AT1G08230.6 31.707 328 198 8 127 436 13 332 9.33e-34 129
Msa1383480 AT1G08230.5 31.707 328 198 8 127 436 13 332 9.33e-34 129
Msa1383480 AT1G08230.3 31.707 328 198 8 127 436 32 351 1.32e-33 129
Msa1383480 AT1G24400.1 27.136 398 261 12 54 434 56 441 2.81e-25 107
Msa1383480 AT5G40780.1 25.275 455 298 12 8 434 6 446 6.19e-25 107
Msa1383480 AT5G40780.3 26.382 398 264 9 54 434 13 398 8.54e-25 105
Msa1383480 AT5G40780.2 26.382 398 264 9 54 434 13 398 8.54e-25 105
Msa1383480 AT1G67640.1 25.385 390 278 9 54 434 56 441 8.73e-23 100
Msa1383480 AT1G48640.1 25.431 464 301 15 1 434 5 453 1.32e-21 97.1
Msa1383480 AT5G09220.1 26.253 419 262 13 57 433 76 489 1.65e-21 97.1
Msa1383480 AT5G63850.1 24.628 471 290 18 7 433 13 462 1.85e-20 94.0
Msa1383480 AT1G25530.1 28.715 397 256 11 54 434 55 440 2.80e-20 93.2
Msa1383480 AT1G71680.1 25.885 452 303 13 2 434 10 448 8.67e-20 91.7
Msa1383480 AT1G44100.1 27.197 478 276 23 9 433 18 476 3.12e-19 90.1
Msa1383480 AT1G77380.1 26.329 395 241 17 57 410 60 445 1.13e-17 85.5
Msa1383480 AT1G58360.1 24.211 475 302 15 6 433 17 480 1.64e-17 85.1
Msa1383480 AT3G01760.1 24.719 445 298 12 6 423 3 437 2.00e-17 84.7
Msa1383480 AT1G61270.1 25.517 435 290 13 7 420 13 434 7.29e-17 82.8
Msa1383480 AT1G10010.2 26.042 480 290 20 4 436 14 475 1.34e-15 79.0
Msa1383480 AT1G10010.1 26.042 480 290 20 4 436 13 474 1.54e-15 79.0
Msa1383480 AT1G71680.2 26.269 335 229 11 2 323 10 339 3.95e-15 77.0

Find 129 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTTGATGAGCAGTTTC+TGG 0.188300 tig0020598:-112396 None:intergenic
AAATACTGGTTACATCATTT+TGG 0.194408 tig0020598:+114127 Msa1383480:CDS
TGGTTACCTTTGCAGGATAC+TGG 0.253653 tig0020598:+115215 Msa1383480:CDS
TTATTTAATTGTAGGTAAAA+AGG 0.256204 tig0020598:+114058 Msa1383480:intron
ATCTTTCAGCTCTTGGAGTT+TGG 0.276364 tig0020598:+114564 Msa1383480:CDS
AAGTCCGATGTATGAGTATT+TGG 0.293374 tig0020598:+115453 Msa1383480:CDS
GAAGAAGTAGCTTAAATTTA+CGG 0.297415 tig0020598:+112264 Msa1383480:five_prime_UTR
AGCCGCTATGAATGTGTTAA+AGG 0.301338 tig0020598:-115557 None:intergenic
ATTCCTCATCTTTCAGCTCT+TGG 0.319082 tig0020598:+114557 Msa1383480:CDS
TGGTTCCTCTTGGTTGGGTA+GGG 0.321672 tig0020598:+113829 Msa1383480:CDS
TCTTTGCCTTGTAGTACATA+TGG 0.322707 tig0020598:-115657 None:intergenic
ATTGCTATGCTCCATGAATA+TGG 0.328776 tig0020598:+113906 Msa1383480:CDS
ATGTACATGGTTACCTTTGC+AGG 0.331651 tig0020598:+115208 Msa1383480:CDS
TTTGCAGGATACTGGGCTTA+TGG 0.333787 tig0020598:+115223 Msa1383480:CDS
TGGATACTCAGGGACCATTA+TGG 0.339605 tig0020598:+113809 Msa1383480:CDS
CCATTATGGTTCCTCTTGGT+TGG 0.339833 tig0020598:+113823 Msa1383480:CDS
TTCATCATGTTCTTGACAAC+TGG 0.353000 tig0020598:-115148 None:intergenic
TCAGCTCTTGGAGTTTGGTT+GGG 0.354431 tig0020598:+114569 Msa1383480:CDS
TTCAGCTCTTGGAGTTTGGT+TGG 0.369188 tig0020598:+114568 Msa1383480:CDS
GAGTATTTGGATACTAGATA+TGG 0.371361 tig0020598:+115466 Msa1383480:CDS
GATCTTGCTGGATATGTATA+TGG 0.372159 tig0020598:+113954 Msa1383480:CDS
TTGAAGGAAGGCTGTAATAT+TGG 0.378244 tig0020598:-115308 None:intergenic
GTGCACGCTATTCAGCAAAT+AGG 0.379972 tig0020598:-115260 None:intergenic
GTCTTGTCCCTCCATATTCA+TGG 0.380371 tig0020598:-113917 None:intergenic
ACTAAAATATTCACAACAAT+TGG 0.391875 tig0020598:+114963 Msa1383480:CDS
CCATCATCATGAATCTTGTT+AGG 0.396564 tig0020598:-112363 None:intergenic
TCCAGCTTGGGTGAAAGCTT+TGG 0.397072 tig0020598:+115285 Msa1383480:CDS
CATTATGGTTCCTCTTGGTT+GGG 0.403721 tig0020598:+113824 Msa1383480:CDS
TGTATGAGGGTTACTCTATC+AGG 0.406580 tig0020598:+116016 Msa1383480:three_prime_UTR
ACAACTTCAGAACAGAATAT+TGG 0.410134 tig0020598:+112237 Msa1383480:five_prime_UTR
ATGGTTCCTCTTGGTTGGGT+AGG 0.416120 tig0020598:+113828 Msa1383480:CDS
GCGTACAGAAGGGAGGGCTC+TGG 0.421865 tig0020598:+115695 Msa1383480:CDS
GCCAAAGCTTTCACCCAAGC+TGG 0.426229 tig0020598:-115286 None:intergenic
GGTTCCTCTTGGTTGGGTAG+GGG 0.426770 tig0020598:+113830 Msa1383480:CDS
TAATTTGATGAGCAGTTTCT+GGG 0.429639 tig0020598:-112395 None:intergenic
CGGCATGCTTCCTGAGATAC+AGG 0.431193 tig0020598:+115019 Msa1383480:CDS
GTGGGATGTGTCCTCACTAC+TGG 0.431656 tig0020598:+113765 Msa1383480:CDS
GCGGCTCTTCTGCCATTCCT+TGG 0.436629 tig0020598:+115574 Msa1383480:CDS
GTTCCTCTTGGTTGGGTAGG+GGG 0.437185 tig0020598:+113831 Msa1383480:CDS
AAATGCTTTCATTGTTGGAT+AGG 0.440493 tig0020598:+115886 Msa1383480:three_prime_UTR
ATCATTGGTTGTTACGTTGA+AGG 0.441028 tig0020598:+112143 Msa1383480:five_prime_UTR
AATGCAACATATAGTGTATG+AGG 0.443507 tig0020598:+116002 Msa1383480:three_prime_UTR
GTCTATCTGACCTGTATCTC+AGG 0.450002 tig0020598:-115029 None:intergenic
CTGTGGTTTCAGTTTACCAT+TGG 0.450914 tig0020598:+115175 Msa1383480:CDS
TCATTTAGAGTCGGAGTAAG+AGG 0.457265 tig0020598:+115523 Msa1383480:CDS
GGGACCATTATGGTTCCTCT+TGG 0.458907 tig0020598:+113819 Msa1383480:CDS
TAGCGTGCACGGTCCAGCTT+GGG 0.462680 tig0020598:+115273 Msa1383480:CDS
GCTTATGTGCTTGGATACTC+AGG 0.465982 tig0020598:+113798 Msa1383480:CDS
CCGTACTGCATTGCTATAGC+TGG 0.473359 tig0020598:+114506 Msa1383480:CDS
CCACCTACGGTAACAACAAT+GGG 0.475476 tig0020598:+112324 Msa1383480:exon
CCCATTGTTGTTACCGTAGG+TGG 0.481174 tig0020598:-112324 None:intergenic
CGGAGTAAGAGGTGGTTACC+TGG 0.486173 tig0020598:+115534 Msa1383480:CDS
TGTATACATTGTCATAGCAT+TGG 0.487225 tig0020598:+114613 Msa1383480:CDS
ATTAGATACAGAGATCTTGC+TGG 0.488924 tig0020598:+113942 Msa1383480:CDS
TCATTGGTTGTTACGTTGAA+GGG 0.493431 tig0020598:+112144 Msa1383480:five_prime_UTR
GGTTACCTTTGCAGGATACT+GGG 0.495231 tig0020598:+115216 Msa1383480:CDS
GTCAACAGTGCTTATGTGCT+TGG 0.495512 tig0020598:+113789 Msa1383480:CDS
GGATATCGATATGATATCAT+TGG 0.496776 tig0020598:+112128 Msa1383480:five_prime_UTR
GACAACTGGCTGCTTAATTG+TGG 0.498032 tig0020598:-115134 None:intergenic
CGTACAGAAGGGAGGGCTCT+GGG 0.498171 tig0020598:+115696 Msa1383480:CDS
ATAGCGTGCACGGTCCAGCT+TGG 0.509613 tig0020598:+115272 Msa1383480:CDS
CAGCAACTGTTGCGGCAGTA+CGG 0.519965 tig0020598:+115752 Msa1383480:CDS
TTACCCATTGTTGTTACCGT+AGG 0.520185 tig0020598:-112327 None:intergenic
AGTATTTGGATACTAGATAT+GGG 0.521407 tig0020598:+115467 Msa1383480:CDS
TTTGAGATCTCTCATACCGC+TGG 0.525161 tig0020598:+112201 Msa1383480:five_prime_UTR
ACAACAATTGCCACCACCTA+CGG 0.529612 tig0020598:+112311 Msa1383480:five_prime_UTR
TGGACTTGTACCAATGTACA+TGG 0.531370 tig0020598:+115195 Msa1383480:CDS
CAAACTATCAAGCGTACAGA+AGG 0.532535 tig0020598:+115684 Msa1383480:CDS
TATACCGTGTTTCGAGATGA+TGG 0.534072 tig0020598:+114470 Msa1383480:CDS
AATGCTTATATATAGAAGAC+AGG 0.537165 tig0020598:+112176 Msa1383480:five_prime_UTR
TGAAAGATGAGGAATGCAAA+TGG 0.537838 tig0020598:-114549 None:intergenic
CCAACCAAGAGGAACCATAA+TGG 0.541448 tig0020598:-113823 None:intergenic
GTAATGCAATGACTGATTGA+AGG 0.542448 tig0020598:-115324 None:intergenic
CTAGTGTTCGCATACAATAC+CGG 0.545518 tig0020598:+114999 Msa1383480:CDS
CTATGAATGTGTTAAAGGCC+AGG 0.545650 tig0020598:-115552 None:intergenic
CTCTCGAAATCTCCAAGGAA+TGG 0.547393 tig0020598:-115586 None:intergenic
GTTACTCTATCAGGTTCTGT+TGG 0.549480 tig0020598:+116025 Msa1383480:three_prime_UTR
GGAGATTTCGAGAGTCTCAC+AGG 0.554644 tig0020598:+115595 Msa1383480:CDS
TGCAGATTCATGGTTTCAAG+TGG 0.558255 tig0020598:+113746 Msa1383480:intron
AAGAACTTGTCATTTAGAGT+CGG 0.561515 tig0020598:+115514 Msa1383480:CDS
ACCACCTACGGTAACAACAA+TGG 0.561583 tig0020598:+112323 Msa1383480:exon
GTATCCAAATACTCATACAT+CGG 0.565959 tig0020598:-115457 None:intergenic
CCTAACAAGATTCATGATGA+TGG 0.566611 tig0020598:+112363 Msa1383480:CDS
AAAAGGCATATTCTATCACA+TGG 0.568216 tig0020598:+114075 Msa1383480:CDS
GATCAGTGGAGAAGCAATGA+AGG 0.571127 tig0020598:+115489 Msa1383480:CDS
ACTTCAGAACAGAATATTGG+TGG 0.573977 tig0020598:+112240 Msa1383480:five_prime_UTR
ATTGTTGTTACCGTAGGTGG+TGG 0.574248 tig0020598:-112321 None:intergenic
GTCTATTGCAGCAACTGTTG+CGG 0.576459 tig0020598:+115744 Msa1383480:CDS
TTGCAAGAATAAATGTAAGC+GGG 0.576732 tig0020598:-115633 None:intergenic
ACAACAATGGGTAAAGGAAG+AGG 0.581226 tig0020598:+112336 Msa1383480:exon
GGAACAGTGTAATCTCGAGC+AGG 0.584265 tig0020598:-114927 None:intergenic
CAATGGTAAACTGAAACCAC+AGG 0.585074 tig0020598:-115174 None:intergenic
ACGGTAACAACAATGGGTAA+AGG 0.586107 tig0020598:+112330 Msa1383480:exon
CTGTATCTCAGGAAGCATGC+CGG 0.587899 tig0020598:-115018 None:intergenic
GAGGCTAAAGAAAACAATGT+TGG 0.588227 tig0020598:-115719 None:intergenic
TTGGTGCTGTCGATTAAAGA+TGG 0.589660 tig0020598:+114632 Msa1383480:CDS
GATACTAGATATGGGATCAG+TGG 0.595270 tig0020598:+115475 Msa1383480:CDS
GCAGATTCATGGTTTCAAGT+GGG 0.595461 tig0020598:+113747 Msa1383480:intron
TGCAAACCATATGTACTACA+AGG 0.605665 tig0020598:+115651 Msa1383480:CDS
TGCTATGACAATGTATACAA+AGG 0.606274 tig0020598:-114609 None:intergenic
ACTGCTCATCAAATTAGCAC+CGG 0.606729 tig0020598:+112402 Msa1383480:CDS
GATTACACTGTTCCAGAACA+CGG 0.606932 tig0020598:+114936 Msa1383480:CDS
CACACCATCATCTCGAAACA+CGG 0.612096 tig0020598:-114474 None:intergenic
CTATGCTCCATGAATATGGA+GGG 0.617895 tig0020598:+113910 Msa1383480:CDS
TATTTGCTGAATAGCGTGCA+CGG 0.618514 tig0020598:+115262 Msa1383480:CDS
TATCAAGCGTACAGAAGGGA+GGG 0.624875 tig0020598:+115689 Msa1383480:CDS
CCAGCTATAGCAATGCAGTA+CGG 0.625491 tig0020598:-114506 None:intergenic
GCTATGCTCCATGAATATGG+AGG 0.628110 tig0020598:+113909 Msa1383480:CDS
ATTAGCATAGAGCGAAATCG+CGG 0.629033 tig0020598:-113877 None:intergenic
CTATCAAGCGTACAGAAGGG+AGG 0.630934 tig0020598:+115688 Msa1383480:CDS
CACTGTTGACTCCAGTAGTG+AGG 0.634084 tig0020598:-113776 None:intergenic
GTACATTGGTACAAGTCCAA+TGG 0.635192 tig0020598:-115191 None:intergenic
ACTCCAAGAGCTGAAAGATG+AGG 0.637059 tig0020598:-114560 None:intergenic
TTTGCAAGAATAAATGTAAG+CGG 0.638473 tig0020598:-115634 None:intergenic
TGAGACTCTCGAAATCTCCA+AGG 0.640360 tig0020598:-115591 None:intergenic
CTTATGTGCTTGGATACTCA+GGG 0.644689 tig0020598:+113799 Msa1383480:CDS
TTTAGAGTCGGAGTAAGAGG+TGG 0.647394 tig0020598:+115526 Msa1383480:CDS
TGCAATGACTGATTGAAGGA+AGG 0.648266 tig0020598:-115320 None:intergenic
ATGCAACATATAGTGTATGA+GGG 0.651172 tig0020598:+116003 Msa1383480:three_prime_UTR
ATAAGCCCAGTATCCTGCAA+AGG 0.654594 tig0020598:-115221 None:intergenic
GCAAAGGTAACCATGTACAT+TGG 0.656882 tig0020598:-115205 None:intergenic
CAGTTGCTGCAATAGACATG+AGG 0.663766 tig0020598:-115738 None:intergenic
AAACTATCAAGCGTACAGAA+GGG 0.678840 tig0020598:+115685 Msa1383480:CDS
AAAGGCATATTCTATCACAT+GGG 0.685218 tig0020598:+114076 Msa1383480:CDS
GGCCTTTAACACATTCATAG+CGG 0.702664 tig0020598:+115555 Msa1383480:CDS
TGTTGATAAGAATCAACCAG+CGG 0.728252 tig0020598:-112217 None:intergenic
AGCGGTATGAGAGATCTCAA+AGG 0.729107 tig0020598:-112199 None:intergenic
AATGGTAAACTGAAACCACA+GGG 0.745661 tig0020598:-115173 None:intergenic
AGAACATGATGAAATCCCTG+TGG 0.754118 tig0020598:+115158 Msa1383480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTAATTTTGAGA+GGG + tig0020598:112489-112508 Msa1383480:intron 10.0%
!!! AATAAAAATTTAGAATATAC+AGG + tig0020598:113467-113486 Msa1383480:intron 10.0%
!!! TTAATTAACTAATTTTTTTC+TGG + tig0020598:113673-113692 Msa1383480:intron 10.0%
!!! TGTTTTAATTTAATTTTAAC+TGG + tig0020598:113708-113727 Msa1383480:intron 10.0%
!!! GTTTTAATTTAATTTTAACT+GGG + tig0020598:113709-113728 Msa1383480:intron 10.0%
!!! TTTTCATTTTATTTAATTGT+AGG + tig0020598:114050-114069 Msa1383480:intron 10.0%
!!! AATATACAATTTTAATTGAA+TGG - tig0020598:114188-114207 None:intergenic 10.0%
!!! TTCTATATATAAGCATTTTT+TGG - tig0020598:112173-112192 None:intergenic 15.0%
!! AAAAAGAAAAATTAAGGTTA+TGG - tig0020598:112441-112460 None:intergenic 15.0%
!!! GTTTTATATTTAATTTTGAG+AGG + tig0020598:112488-112507 Msa1383480:intron 15.0%
!! TATGTAAACAAAACAAATAT+AGG - tig0020598:112737-112756 None:intergenic 15.0%
!! GAAAAAAAAAAGTTTAATGA+TGG + tig0020598:112953-112972 Msa1383480:intron 15.0%
!!! TGTGTAAAATAATTTTTCAA+TGG + tig0020598:113193-113212 Msa1383480:intron 15.0%
!!! TTGTATAAAACTTTTCTTTT+TGG + tig0020598:113317-113336 Msa1383480:intron 15.0%
!! TTATTTAATTGTAGGTAAAA+AGG + tig0020598:114058-114077 Msa1383480:intron 15.0%
!!! AGTCCATAATATTTTTTAAT+CGG - tig0020598:114303-114322 None:intergenic 15.0%
!! AATATAGGTAAACTACAAAA+GGG - tig0020598:112722-112741 None:intergenic 20.0%
!! AAATATAGGTAAACTACAAA+AGG - tig0020598:112723-112742 None:intergenic 20.0%
!!! ATTCTAAATGTTTTGATAGA+TGG - tig0020598:113000-113019 None:intergenic 20.0%
!! ATCTATCAAAACATTTAGAA+TGG + tig0020598:112999-113018 Msa1383480:intron 20.0%
!!! AACTGAAGAAGTATATTAAA+GGG - tig0020598:113655-113674 None:intergenic 20.0%
!!! TAACTGAAGAAGTATATTAA+AGG - tig0020598:113656-113675 None:intergenic 20.0%
!!! TTAATTTAATTTTAACTGGG+TGG + tig0020598:113712-113731 Msa1383480:intron 20.0%
!!! AATCTTTTCATGATAAATAC+TGG + tig0020598:114113-114132 Msa1383480:CDS 20.0%
!! TTTGAAAGTAAGAGAAATTT+AGG + tig0020598:114160-114179 Msa1383480:intron 20.0%
!! GTTATTTAGTAAAGAAAGTT+TGG - tig0020598:114257-114276 None:intergenic 20.0%
!!! TTGAGCATTATTTTTTGTAA+AGG + tig0020598:114326-114345 Msa1383480:intron 20.0%
!!! ATTTTTTGTAAAGGACTAAA+AGG + tig0020598:114335-114354 Msa1383480:intron 20.0%
!!! TTTAGATAAGTGGATTATTA+TGG - tig0020598:114743-114762 None:intergenic 20.0%
!! ACTAAAATATTCACAACAAT+TGG + tig0020598:114963-114982 Msa1383480:CDS 20.0%
!! TGAAACTTAATATGAAGATA+TGG - tig0020598:115067-115086 None:intergenic 20.0%
!!! ACTTATTTTGTATTTTTACC+TGG + tig0020598:115393-115412 Msa1383480:intron 20.0%
!!! ATTTTAAATGCTTTCATTGT+TGG + tig0020598:115881-115900 Msa1383480:three_prime_UTR 20.0%
! AATGCTTATATATAGAAGAC+AGG + tig0020598:112176-112195 Msa1383480:five_prime_UTR 25.0%
! GAAGAAGTAGCTTAAATTTA+CGG + tig0020598:112264-112283 Msa1383480:five_prime_UTR 25.0%
! CGTACTATAATATTTCAACA+AGG - tig0020598:112581-112600 None:intergenic 25.0%
!! ACTGAAGAAGTATATTAAAG+GGG - tig0020598:113654-113673 None:intergenic 25.0%
! GGATATGTATATGGTAAATA+AGG + tig0020598:113963-113982 Msa1383480:intron 25.0%
!! AGATTTCTAATGTGTTTTGT+TGG - tig0020598:113989-114008 None:intergenic 25.0%
!!! AAATACTGGTTACATCATTT+TGG + tig0020598:114127-114146 Msa1383480:CDS 25.0%
!!! AAGTTTGGATTAGTTTTTGT+CGG - tig0020598:114242-114261 None:intergenic 25.0%
!!! CCATAATATTTTTTAATCGG+AGG - tig0020598:114300-114319 None:intergenic 25.0%
! CCTCCGATTAAAAAATATTA+TGG + tig0020598:114297-114316 Msa1383480:intron 25.0%
!! TATTTGTTAATGTAACTTGC+AGG + tig0020598:115111-115130 Msa1383480:intron 25.0%
! AGTATTTGGATACTAGATAT+GGG + tig0020598:115467-115486 Msa1383480:CDS 25.0%
! TTTGCAAGAATAAATGTAAG+CGG - tig0020598:115637-115656 None:intergenic 25.0%
GGATATCGATATGATATCAT+TGG + tig0020598:112128-112147 Msa1383480:five_prime_UTR 30.0%
ACAACTTCAGAACAGAATAT+TGG + tig0020598:112237-112256 Msa1383480:five_prime_UTR 30.0%
TAATTTGATGAGCAGTTTCT+GGG - tig0020598:112398-112417 None:intergenic 30.0%
TTCGAAAATTCCCATGTTAA+TGG + tig0020598:112532-112551 Msa1383480:intron 30.0%
TATAGTACGACATATTGAAG+AGG + tig0020598:112592-112611 Msa1383480:intron 30.0%
!! TTTGTTTTCCTTTCCAAACA+AGG + tig0020598:112667-112686 Msa1383480:intron 30.0%
! TTGTTTTCCTTTCCAAACAA+GGG + tig0020598:112668-112687 Msa1383480:intron 30.0%
!! TGTACGTGTCGATTATTAAA+AGG + tig0020598:112864-112883 Msa1383480:intron 30.0%
!! AATATTTGCTATTTGCAGAG+TGG - tig0020598:113117-113136 None:intergenic 30.0%
CACATATCACAGCTTATTAT+TGG - tig0020598:113365-113384 None:intergenic 30.0%
ATAATAAGCTGTGATATGTG+TGG + tig0020598:113365-113384 Msa1383480:intron 30.0%
TGGAAACAACAAGTTATTCA+AGG - tig0020598:113422-113441 None:intergenic 30.0%
TATTCACTCTTGAGAAGAAA+CGG + tig0020598:113620-113639 Msa1383480:intron 30.0%
! CTGAAGAAGTATATTAAAGG+GGG - tig0020598:113653-113672 None:intergenic 30.0%
!!! ATTTTAACTGGGTGGTAATT+TGG + tig0020598:113720-113739 Msa1383480:intron 30.0%
!!! AATTTGGTTTTGCAGATTCA+TGG + tig0020598:113736-113755 Msa1383480:intron 30.0%
! AAAAGGCATATTCTATCACA+TGG + tig0020598:114075-114094 Msa1383480:CDS 30.0%
! AAAGGCATATTCTATCACAT+GGG + tig0020598:114076-114095 Msa1383480:CDS 30.0%
!!! AGTTTGGATTAGTTTTTGTC+GGG - tig0020598:114241-114260 None:intergenic 30.0%
!!! GATCCTTTAAAATTTTCTCG+CGG - tig0020598:114362-114381 None:intergenic 30.0%
TGCTATGACAATGTATACAA+AGG - tig0020598:114612-114631 None:intergenic 30.0%
TGTATACATTGTCATAGCAT+TGG + tig0020598:114613-114632 Msa1383480:CDS 30.0%
! CAATTGGTTTAAAGAACTGA+TGG - tig0020598:114719-114738 None:intergenic 30.0%
!! AGTGGATTATTATGGACAAT+TGG - tig0020598:114735-114754 None:intergenic 30.0%
CTGAGTAAACTTTAGATAAG+TGG - tig0020598:114753-114772 None:intergenic 30.0%
AGTTTACTCAGTTATACACT+AGG + tig0020598:114762-114781 Msa1383480:intron 30.0%
GAAATAGAACACAGGTTATT+AGG - tig0020598:115419-115438 None:intergenic 30.0%
GTATCCAAATACTCATACAT+CGG - tig0020598:115460-115479 None:intergenic 30.0%
GAGTATTTGGATACTAGATA+TGG + tig0020598:115466-115485 Msa1383480:CDS 30.0%
! AAGAACTTGTCATTTAGAGT+CGG + tig0020598:115514-115533 Msa1383480:CDS 30.0%
TTGCAAGAATAAATGTAAGC+GGG - tig0020598:115636-115655 None:intergenic 30.0%
AAATGCTTTCATTGTTGGAT+AGG + tig0020598:115886-115905 Msa1383480:three_prime_UTR 30.0%
AATGCAACATATAGTGTATG+AGG + tig0020598:116002-116021 Msa1383480:three_prime_UTR 30.0%
ATGCAACATATAGTGTATGA+GGG + tig0020598:116003-116022 Msa1383480:three_prime_UTR 30.0%
! ATCATTGGTTGTTACGTTGA+AGG + tig0020598:112143-112162 Msa1383480:five_prime_UTR 35.0%
! TCATTGGTTGTTACGTTGAA+GGG + tig0020598:112144-112163 Msa1383480:five_prime_UTR 35.0%
! TGTTGATAAGAATCAACCAG+CGG - tig0020598:112220-112239 None:intergenic 35.0%
ACTTCAGAACAGAATATTGG+TGG + tig0020598:112240-112259 Msa1383480:five_prime_UTR 35.0%
CCATCATCATGAATCTTGTT+AGG - tig0020598:112366-112385 None:intergenic 35.0%
CCTAACAAGATTCATGATGA+TGG + tig0020598:112363-112382 Msa1383480:CDS 35.0%
CTAATTTGATGAGCAGTTTC+TGG - tig0020598:112399-112418 None:intergenic 35.0%
TTATGGTGTGAGATACAAAC+CGG - tig0020598:112424-112443 None:intergenic 35.0%
ATTCCCATGTTAATGGAACA+TGG + tig0020598:112539-112558 Msa1383480:intron 35.0%
ACTCCATGTTCCATTAACAT+GGG - tig0020598:112545-112564 None:intergenic 35.0%
! TAATTTGCCCTTGTTTGGAA+AGG - tig0020598:112678-112697 None:intergenic 35.0%
GCAGAATCAAAATTCAGTCA+TGG - tig0020598:112776-112795 None:intergenic 35.0%
!! CTTTTCTTTTTGGAGAGTGT+CGG + tig0020598:113327-113346 Msa1383480:intron 35.0%
GTGAATATGAATGTTACGCA+TGG - tig0020598:113442-113461 None:intergenic 35.0%
TTAGTGCCAGGAAATCAAAA+GGG - tig0020598:113579-113598 None:intergenic 35.0%
ATTAGTGCCAGGAAATCAAA+AGG - tig0020598:113580-113599 None:intergenic 35.0%
AGAAAACTGATATTAGTGCC+AGG - tig0020598:113591-113610 None:intergenic 35.0%
ATTGCTATGCTCCATGAATA+TGG + tig0020598:113906-113925 Msa1383480:CDS 35.0%
ATTAGATACAGAGATCTTGC+TGG + tig0020598:113942-113961 Msa1383480:CDS 35.0%
GATCTTGCTGGATATGTATA+TGG + tig0020598:113954-113973 Msa1383480:CDS 35.0%
!!! GTAGTGACTTTTTTTGACAC+CGG + tig0020598:114419-114438 Msa1383480:intron 35.0%
TGAAAGATGAGGAATGCAAA+TGG - tig0020598:114552-114571 None:intergenic 35.0%
TGGTTTAAAGAACTGATGGT+AGG - tig0020598:114715-114734 None:intergenic 35.0%
!!! ATTTTAGTTACACCGTGTTC+TGG - tig0020598:114951-114970 None:intergenic 35.0%
TTCATCATGTTCTTGACAAC+TGG - tig0020598:115151-115170 None:intergenic 35.0%
AATGGTAAACTGAAACCACA+GGG - tig0020598:115176-115195 None:intergenic 35.0%
TTGAAGGAAGGCTGTAATAT+TGG - tig0020598:115311-115330 None:intergenic 35.0%
GTAATGCAATGACTGATTGA+AGG - tig0020598:115327-115346 None:intergenic 35.0%
ATCTGTCAGAAATAGAACAC+AGG - tig0020598:115427-115446 None:intergenic 35.0%
AAGTCCGATGTATGAGTATT+TGG + tig0020598:115453-115472 Msa1383480:CDS 35.0%
TGCAAACCATATGTACTACA+AGG + tig0020598:115651-115670 Msa1383480:CDS 35.0%
TCTTTGCCTTGTAGTACATA+TGG - tig0020598:115660-115679 None:intergenic 35.0%
AAACTATCAAGCGTACAGAA+GGG + tig0020598:115685-115704 Msa1383480:CDS 35.0%
GAGGCTAAAGAAAACAATGT+TGG - tig0020598:115722-115741 None:intergenic 35.0%
! TTACCCATTGTTGTTACCGT+AGG - tig0020598:112330-112349 None:intergenic 40.0%
ACGGTAACAACAATGGGTAA+AGG + tig0020598:112330-112349 Msa1383480:exon 40.0%
ACAACAATGGGTAAAGGAAG+AGG + tig0020598:112336-112355 Msa1383480:exon 40.0%
ACTGCTCATCAAATTAGCAC+CGG + tig0020598:112402-112421 Msa1383480:CDS 40.0%
GACTCCATGTTCCATTAACA+TGG - tig0020598:112546-112565 None:intergenic 40.0%
TTAATGGAACATGGAGTCAG+AGG + tig0020598:112548-112567 Msa1383480:intron 40.0%
! GAGACTAATTTGCCCTTGTT+TGG - tig0020598:112683-112702 None:intergenic 40.0%
!! ATTTGCTATTTGCAGAGTGG+TGG - tig0020598:113114-113133 None:intergenic 40.0%
TAGTGCCAGGAAATCAAAAG+GGG - tig0020598:113578-113597 None:intergenic 40.0%
TGCAGATTCATGGTTTCAAG+TGG + tig0020598:113746-113765 Msa1383480:intron 40.0%
! GCAGATTCATGGTTTCAAGT+GGG + tig0020598:113747-113766 Msa1383480:intron 40.0%
CTTATGTGCTTGGATACTCA+GGG + tig0020598:113799-113818 Msa1383480:CDS 40.0%
CATTATGGTTCCTCTTGGTT+GGG + tig0020598:113824-113843 Msa1383480:CDS 40.0%
ATTAGCATAGAGCGAAATCG+CGG - tig0020598:113880-113899 None:intergenic 40.0%
CTATGCTCCATGAATATGGA+GGG + tig0020598:113910-113929 Msa1383480:CDS 40.0%
!! ACTGGTTACATCATTTTGGC+TGG + tig0020598:114131-114150 Msa1383480:CDS 40.0%
TTTGTCGGGACTAAATTGAG+TGG - tig0020598:114227-114246 None:intergenic 40.0%
! GGACCGCGAGAAAATTTTAA+AGG + tig0020598:114356-114375 Msa1383480:intron 40.0%
TATACCGTGTTTCGAGATGA+TGG + tig0020598:114470-114489 Msa1383480:CDS 40.0%
ATTCCTCATCTTTCAGCTCT+TGG + tig0020598:114557-114576 Msa1383480:CDS 40.0%
ATCTTTCAGCTCTTGGAGTT+TGG + tig0020598:114564-114583 Msa1383480:CDS 40.0%
!! TTGGTGCTGTCGATTAAAGA+TGG + tig0020598:114632-114651 Msa1383480:CDS 40.0%
GATTACACTGTTCCAGAACA+CGG + tig0020598:114936-114955 Msa1383480:CDS 40.0%
CTAGTGTTCGCATACAATAC+CGG + tig0020598:114999-115018 Msa1383480:CDS 40.0%
AGAACATGATGAAATCCCTG+TGG + tig0020598:115158-115177 Msa1383480:CDS 40.0%
CAATGGTAAACTGAAACCAC+AGG - tig0020598:115177-115196 None:intergenic 40.0%
CTGTGGTTTCAGTTTACCAT+TGG + tig0020598:115175-115194 Msa1383480:CDS 40.0%
GTACATTGGTACAAGTCCAA+TGG - tig0020598:115194-115213 None:intergenic 40.0%
TGGACTTGTACCAATGTACA+TGG + tig0020598:115195-115214 Msa1383480:CDS 40.0%
GCAAAGGTAACCATGTACAT+TGG - tig0020598:115208-115227 None:intergenic 40.0%
ATGTACATGGTTACCTTTGC+AGG + tig0020598:115208-115227 Msa1383480:CDS 40.0%
! TATTTGCTGAATAGCGTGCA+CGG + tig0020598:115262-115281 Msa1383480:CDS 40.0%
TGCAATGACTGATTGAAGGA+AGG - tig0020598:115323-115342 None:intergenic 40.0%
GATACTAGATATGGGATCAG+TGG + tig0020598:115475-115494 Msa1383480:CDS 40.0%
! TCATTTAGAGTCGGAGTAAG+AGG + tig0020598:115523-115542 Msa1383480:CDS 40.0%
CTATGAATGTGTTAAAGGCC+AGG - tig0020598:115555-115574 None:intergenic 40.0%
GGCCTTTAACACATTCATAG+CGG + tig0020598:115555-115574 Msa1383480:CDS 40.0%
AGCCGCTATGAATGTGTTAA+AGG - tig0020598:115560-115579 None:intergenic 40.0%
CAAACTATCAAGCGTACAGA+AGG + tig0020598:115684-115703 Msa1383480:CDS 40.0%
TGTATGAGGGTTACTCTATC+AGG + tig0020598:116016-116035 Msa1383480:three_prime_UTR 40.0%
GTTACTCTATCAGGTTCTGT+TGG + tig0020598:116025-116044 Msa1383480:three_prime_UTR 40.0%
AGCGGTATGAGAGATCTCAA+AGG - tig0020598:112202-112221 None:intergenic 45.0%
! TTTGAGATCTCTCATACCGC+TGG + tig0020598:112201-112220 Msa1383480:five_prime_UTR 45.0%
ACAACAATTGCCACCACCTA+CGG + tig0020598:112311-112330 Msa1383480:five_prime_UTR 45.0%
! ATTGTTGTTACCGTAGGTGG+TGG - tig0020598:112324-112343 None:intergenic 45.0%
ACCACCTACGGTAACAACAA+TGG + tig0020598:112323-112342 Msa1383480:exon 45.0%
CCACCTACGGTAACAACAAT+GGG + tig0020598:112324-112343 Msa1383480:exon 45.0%
AGTGCCAGGAAATCAAAAGG+GGG - tig0020598:113577-113596 None:intergenic 45.0%
GTCAACAGTGCTTATGTGCT+TGG + tig0020598:113789-113808 Msa1383480:CDS 45.0%
GCTTATGTGCTTGGATACTC+AGG + tig0020598:113798-113817 Msa1383480:CDS 45.0%
TGGATACTCAGGGACCATTA+TGG + tig0020598:113809-113828 Msa1383480:CDS 45.0%
CCAACCAAGAGGAACCATAA+TGG - tig0020598:113826-113845 None:intergenic 45.0%
CCATTATGGTTCCTCTTGGT+TGG + tig0020598:113823-113842 Msa1383480:CDS 45.0%
GCTATGCTCCATGAATATGG+AGG + tig0020598:113909-113928 Msa1383480:CDS 45.0%
GTCTTGTCCCTCCATATTCA+TGG - tig0020598:113920-113939 None:intergenic 45.0%
CACCACAGTGAACGTAAAAC+CGG - tig0020598:114441-114460 None:intergenic 45.0%
! TTTTACGTTCACTGTGGTGC+AGG + tig0020598:114442-114461 Msa1383480:intron 45.0%
CACACCATCATCTCGAAACA+CGG - tig0020598:114477-114496 None:intergenic 45.0%
CCAGCTATAGCAATGCAGTA+CGG - tig0020598:114509-114528 None:intergenic 45.0%
ACTCCAAGAGCTGAAAGATG+AGG - tig0020598:114563-114582 None:intergenic 45.0%
TTCAGCTCTTGGAGTTTGGT+TGG + tig0020598:114568-114587 Msa1383480:CDS 45.0%
TCAGCTCTTGGAGTTTGGTT+GGG + tig0020598:114569-114588 Msa1383480:CDS 45.0%
CTAACCAACAATGCATTGCC+AGG + tig0020598:114894-114913 Msa1383480:intron 45.0%
CATTCCTGGCAATGCATTGT+TGG - tig0020598:114901-114920 None:intergenic 45.0%
GTCTATCTGACCTGTATCTC+AGG - tig0020598:115032-115051 None:intergenic 45.0%
GACAACTGGCTGCTTAATTG+TGG - tig0020598:115137-115156 None:intergenic 45.0%
TGGTTACCTTTGCAGGATAC+TGG + tig0020598:115215-115234 Msa1383480:CDS 45.0%
GGTTACCTTTGCAGGATACT+GGG + tig0020598:115216-115235 Msa1383480:CDS 45.0%
ATAAGCCCAGTATCCTGCAA+AGG - tig0020598:115224-115243 None:intergenic 45.0%
TTTGCAGGATACTGGGCTTA+TGG + tig0020598:115223-115242 Msa1383480:CDS 45.0%
GTGCACGCTATTCAGCAAAT+AGG - tig0020598:115263-115282 None:intergenic 45.0%
AGAACACAGGTTATTAGGCC+AGG - tig0020598:115414-115433 None:intergenic 45.0%
GATCAGTGGAGAAGCAATGA+AGG + tig0020598:115489-115508 Msa1383480:CDS 45.0%
! TTTAGAGTCGGAGTAAGAGG+TGG + tig0020598:115526-115545 Msa1383480:CDS 45.0%
CTCTCGAAATCTCCAAGGAA+TGG - tig0020598:115589-115608 None:intergenic 45.0%
TGAGACTCTCGAAATCTCCA+AGG - tig0020598:115594-115613 None:intergenic 45.0%
TATCAAGCGTACAGAAGGGA+GGG + tig0020598:115689-115708 Msa1383480:CDS 45.0%
CAGTTGCTGCAATAGACATG+AGG - tig0020598:115741-115760 None:intergenic 45.0%
GTCTATTGCAGCAACTGTTG+CGG + tig0020598:115744-115763 Msa1383480:CDS 45.0%
!! TTATTTAAAAAGAAAAATTA+AGG - tig0020598:112447-112466 None:intergenic 5.0%
!!! AACAAAATAATATTTTTTTT+TGG - tig0020598:112845-112864 None:intergenic 5.0%
! CCCATTGTTGTTACCGTAGG+TGG - tig0020598:112327-112346 None:intergenic 50.0%
GGAAGAACATGACGCACATG+CGG + tig0020598:112613-112632 Msa1383480:intron 50.0%
!!! ACACCCCCCTTTTGATTTCC+TGG + tig0020598:113570-113589 Msa1383480:intron 50.0%
GTGCCAGGAAATCAAAAGGG+GGG - tig0020598:113576-113595 None:intergenic 50.0%
!! CACTGTTGACTCCAGTAGTG+AGG - tig0020598:113779-113798 None:intergenic 50.0%
GGGACCATTATGGTTCCTCT+TGG + tig0020598:113819-113838 Msa1383480:CDS 50.0%
ATGGTTCCTCTTGGTTGGGT+AGG + tig0020598:113828-113847 Msa1383480:CDS 50.0%
TGGTTCCTCTTGGTTGGGTA+GGG + tig0020598:113829-113848 Msa1383480:CDS 50.0%
!!! CACCGGTTTTACGTTCACTG+TGG + tig0020598:114436-114455 Msa1383480:intron 50.0%
CCGTACTGCATTGCTATAGC+TGG + tig0020598:114506-114525 Msa1383480:CDS 50.0%
CGAGCAGGTGAATTCATTCC+TGG - tig0020598:114915-114934 None:intergenic 50.0%
GGAACAGTGTAATCTCGAGC+AGG - tig0020598:114930-114949 None:intergenic 50.0%
! CTGTATCTCAGGAAGCATGC+CGG - tig0020598:115021-115040 None:intergenic 50.0%
TCCAGCTTGGGTGAAAGCTT+TGG + tig0020598:115285-115304 Msa1383480:CDS 50.0%
GGAGATTTCGAGAGTCTCAC+AGG + tig0020598:115595-115614 Msa1383480:CDS 50.0%
CTATCAAGCGTACAGAAGGG+AGG + tig0020598:115688-115707 Msa1383480:CDS 50.0%
GTGGGATGTGTCCTCACTAC+TGG + tig0020598:113765-113784 Msa1383480:CDS 55.0%
GGTTCCTCTTGGTTGGGTAG+GGG + tig0020598:113830-113849 Msa1383480:CDS 55.0%
GTTCCTCTTGGTTGGGTAGG+GGG + tig0020598:113831-113850 Msa1383480:CDS 55.0%
CGGCATGCTTCCTGAGATAC+AGG + tig0020598:115019-115038 Msa1383480:CDS 55.0%
GCCAAAGCTTTCACCCAAGC+TGG - tig0020598:115289-115308 None:intergenic 55.0%
CGGAGTAAGAGGTGGTTACC+TGG + tig0020598:115534-115553 Msa1383480:CDS 55.0%
CAGCAACTGTTGCGGCAGTA+CGG + tig0020598:115752-115771 Msa1383480:CDS 55.0%
ACACCCCCTACCCAACCAAG+AGG - tig0020598:113837-113856 None:intergenic 60.0%
! GGTTGGGTAGGGGGTGTAGT+TGG + tig0020598:113840-113859 Msa1383480:CDS 60.0%
ATAGCGTGCACGGTCCAGCT+TGG + tig0020598:115272-115291 Msa1383480:CDS 60.0%
TAGCGTGCACGGTCCAGCTT+GGG + tig0020598:115273-115292 Msa1383480:CDS 60.0%
GCGGCTCTTCTGCCATTCCT+TGG + tig0020598:115574-115593 Msa1383480:CDS 60.0%
CGTACAGAAGGGAGGGCTCT+GGG + tig0020598:115696-115715 Msa1383480:CDS 60.0%
GCGTACAGAAGGGAGGGCTC+TGG + tig0020598:115695-115714 Msa1383480:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0020598 gene 112109 116086 112109 ID=Msa1383480;Name=Msa1383480
tig0020598 mRNA 112109 116086 112109 ID=Msa1383480-mRNA-1;Parent=Msa1383480;Name=Msa1383480-mRNA-1;_AED=0.06;_eAED=0.06;_QI=233|1|1|1|1|1|7|264|436
tig0020598 exon 112109 112423 112109 ID=Msa1383480-mRNA-1:exon:8581;Parent=Msa1383480-mRNA-1
tig0020598 exon 113751 113975 113751 ID=Msa1383480-mRNA-1:exon:8582;Parent=Msa1383480-mRNA-1
tig0020598 exon 114072 114166 114072 ID=Msa1383480-mRNA-1:exon:8583;Parent=Msa1383480-mRNA-1
tig0020598 exon 114464 114653 114464 ID=Msa1383480-mRNA-1:exon:8584;Parent=Msa1383480-mRNA-1
tig0020598 exon 114916 115040 114916 ID=Msa1383480-mRNA-1:exon:8585;Parent=Msa1383480-mRNA-1
tig0020598 exon 115133 115348 115133 ID=Msa1383480-mRNA-1:exon:8586;Parent=Msa1383480-mRNA-1
tig0020598 exon 115445 116086 115445 ID=Msa1383480-mRNA-1:exon:8587;Parent=Msa1383480-mRNA-1
tig0020598 five_prime_UTR 112109 112341 112109 ID=Msa1383480-mRNA-1:five_prime_utr;Parent=Msa1383480-mRNA-1
tig0020598 CDS 112342 112423 112342 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 113751 113975 113751 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 114072 114166 114072 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 114464 114653 114464 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 114916 115040 114916 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 115133 115348 115133 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 CDS 115445 115822 115445 ID=Msa1383480-mRNA-1:cds;Parent=Msa1383480-mRNA-1
tig0020598 three_prime_UTR 115823 116086 115823 ID=Msa1383480-mRNA-1:three_prime_utr;Parent=Msa1383480-mRNA-1
Gene Sequence

>Msa1383480

ATGGGTAAAGGAAGAGGTGATCCTAACAAGATTCATGATGATGGTGTTGAAATCCCAGAAACTGCTCATCAAATTAGCACCGATTCATGGTTTCAAGTGGGATGTGTCCTCACTACTGGAGTCAACAGTGCTTATGTGCTTGGATACTCAGGGACCATTATGGTTCCTCTTGGTTGGGTAGGGGGTGTAGTTGGTCTTGTTCTTGCTGCCGCGATTTCGCTCTATGCTAATGCTCTTATTGCTATGCTCCATGAATATGGAGGGACAAGACACATTAGATACAGAGATCTTGCTGGATATGTATATGGTAAAAAGGCATATTCTATCACATGGGCTCTGCAGTATATCAATCTTTTCATGATAAATACTGGTTACATCATTTTGGCTGGTTCAGCTTTGAAAGCTGCTTATACCGTGTTTCGAGATGATGGTGTGCTGAAGCTTCCGTACTGCATTGCTATAGCTGGAATTGTGTGTGCAATGTTTGCCATTTGCATTCCTCATCTTTCAGCTCTTGGAGTTTGGTTGGGAGTTTCAACAGTCTTCACCTTTGTATACATTGTCATAGCATTGGTGCTGTCGATTAAAGATGGAATGAATTCACCTGCTCGAGATTACACTGTTCCAGAACACGGTGTAACTAAAATATTCACAACAATTGGTGCGTCTGCTAGTCTAGTGTTCGCATACAATACCGGCATGCTTCCTGAGATACAGGCCACAATTAAGCAGCCAGTTGTCAAGAACATGATGAAATCCCTGTGGTTTCAGTTTACCATTGGACTTGTACCAATGTACATGGTTACCTTTGCAGGATACTGGGCTTATGGAAATACGACAGAAACCTATTTGCTGAATAGCGTGCACGGTCCAGCTTGGGTGAAAGCTTTGGCCAATATTACAGCCTTCCTTCAATCAGTCATTGCATTACATATATTTGCAAGTCCGATGTATGAGTATTTGGATACTAGATATGGGATCAGTGGAGAAGCAATGAAGGTTAAGAACTTGTCATTTAGAGTCGGAGTAAGAGGTGGTTACCTGGCCTTTAACACATTCATAGCGGCTCTTCTGCCATTCCTTGGAGATTTCGAGAGTCTCACAGGAGCGATCAGCACGTTCCCGCTTACATTTATTCTTGCAAACCATATGTACTACAAGGCAAAGAAGAACAAACTATCAAGCGTACAGAAGGGAGGGCTCTGGGCCAACATTGTTTTCTTTAGCCTCATGTCTATTGCAGCAACTGTTGCGGCAGTACGGCTCATTTCTGTAGACTCAAAAACATACAGTCTATTTGCAGATATTTGA

Protein sequence

>Msa1383480

MGKGRGDPNKIHDDGVEIPETAHQISTDSWFQVGCVLTTGVNSAYVLGYSGTIMVPLGWVGGVVGLVLAAAISLYANALIAMLHEYGGTRHIRYRDLAGYVYGKKAYSITWALQYINLFMINTGYIILAGSALKAAYTVFRDDGVLKLPYCIAIAGIVCAMFAICIPHLSALGVWLGVSTVFTFVYIVIALVLSIKDGMNSPARDYTVPEHGVTKIFTTIGASASLVFAYNTGMLPEIQATIKQPVVKNMMKSLWFQFTIGLVPMYMVTFAGYWAYGNTTETYLLNSVHGPAWVKALANITAFLQSVIALHIFASPMYEYLDTRYGISGEAMKVKNLSFRVGVRGGYLAFNTFIAALLPFLGDFESLTGAISTFPLTFILANHMYYKAKKNKLSSVQKGGLWANIVFFSLMSIAATVAAVRLISVDSKTYSLFADI*