Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362060 | XP_003600838.1 | 97.018 | 436 | 13 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362060 | sp|P92961|PROT1_ARATH | 71.230 | 431 | 122 | 1 | 6 | 436 | 14 | 442 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362060 | G7JAM5 | 97.018 | 436 | 13 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa0362060 | -0.856618 | 2.847597e-62 | -8.615850e-47 |
| Msa0002770 | Msa0362060 | -0.804674 | 1.928476e-49 | -8.615850e-47 |
| Msa0003560 | Msa0362060 | 0.847092 | 1.439091e-59 | -8.615850e-47 |
| Msa0038020 | Msa0362060 | 0.809680 | 1.679002e-50 | -8.615850e-47 |
| Msa0050730 | Msa0362060 | 0.801794 | 7.610768e-49 | -8.615850e-47 |
| Msa0060970 | Msa0362060 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
| Msa0072170 | Msa0362060 | 0.819036 | 1.433784e-52 | -8.615850e-47 |
| Msa0085720 | Msa0362060 | 0.823123 | 1.640436e-53 | -8.615850e-47 |
| Msa0090030 | Msa0362060 | 0.817842 | 2.673286e-52 | -8.615850e-47 |
| Msa0092380 | Msa0362060 | 0.828729 | 7.647434e-55 | -8.615850e-47 |
| Msa0099510 | Msa0362060 | 0.809101 | 2.234735e-50 | -8.615850e-47 |
| Msa0108850 | Msa0362060 | 0.821988 | 3.011902e-53 | -8.615850e-47 |
| Msa0120540 | Msa0362060 | 0.816524 | 5.291328e-52 | -8.615850e-47 |
| Msa0140170 | Msa0362060 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0149810 | Msa0362060 | 0.824632 | 7.266024e-54 | -8.615850e-47 |
| Msa0151950 | Msa0362060 | 0.809574 | 1.769223e-50 | -8.615850e-47 |
| Msa0163560 | Msa0362060 | 0.806483 | 8.046278e-50 | -8.615850e-47 |
| Msa0173330 | Msa0362060 | 0.841267 | 5.271639e-58 | -8.615850e-47 |
| Msa0196020 | Msa0362060 | -0.818885 | 1.551823e-52 | -8.615850e-47 |
| Msa0198940 | Msa0362060 | 0.803573 | 3.269074e-49 | -8.615850e-47 |
| Msa0208810 | Msa0362060 | 0.819840 | 9.403081e-53 | -8.615850e-47 |
| Msa0223100 | Msa0362060 | 0.849842 | 2.493892e-60 | -8.615850e-47 |
| Msa0223290 | Msa0362060 | 0.851437 | 8.880785e-61 | -8.615850e-47 |
| Msa0223380 | Msa0362060 | 0.840277 | 9.580312e-58 | -8.615850e-47 |
| Msa0233610 | Msa0362060 | 0.801362 | 9.331543e-49 | -8.615850e-47 |
| Msa0239940 | Msa0362060 | 0.825247 | 5.202793e-54 | -8.615850e-47 |
| Msa0266210 | Msa0362060 | 0.874927 | 4.606950e-68 | -8.615850e-47 |
| Msa0275400 | Msa0362060 | -0.852650 | 4.016924e-61 | -8.615850e-47 |
| Msa0279210 | Msa0362060 | -0.820288 | 7.424047e-53 | -8.615850e-47 |
| Msa0287670 | Msa0362060 | 0.883434 | 4.500667e-71 | -8.615850e-47 |
| Msa0288320 | Msa0362060 | 0.854366 | 1.290899e-61 | -8.615850e-47 |
| Msa0288730 | Msa0362060 | 0.801123 | 1.044540e-48 | -8.615850e-47 |
| Msa0289400 | Msa0362060 | 0.819943 | 8.905455e-53 | -8.615850e-47 |
| Msa0302650 | Msa0362060 | 0.858111 | 1.031052e-62 | -8.615850e-47 |
| Msa0304700 | Msa0362060 | 0.816397 | 5.647475e-52 | -8.615850e-47 |
| Msa0308200 | Msa0362060 | 0.818143 | 2.285713e-52 | -8.615850e-47 |
| Msa0308220 | Msa0362060 | 0.813434 | 2.564598e-51 | -8.615850e-47 |
| Msa0312310 | Msa0362060 | 0.861135 | 1.269153e-63 | -8.615850e-47 |
| Msa0314120 | Msa0362060 | 0.812576 | 3.954576e-51 | -8.615850e-47 |
| Msa0318970 | Msa0362060 | -0.809341 | 1.985161e-50 | -8.615850e-47 |
| Msa0328380 | Msa0362060 | 0.801293 | 9.641316e-49 | -8.615850e-47 |
| Msa0349680 | Msa0362060 | 0.800853 | 1.186195e-48 | -8.615850e-47 |
| Msa0361010 | Msa0362060 | 0.804954 | 1.685670e-49 | -8.615850e-47 |
| Msa0362060 | Msa0363100 | 0.874703 | 5.490167e-68 | -8.615850e-47 |
| Msa0362060 | Msa0363170 | 0.879685 | 1.018705e-69 | -8.615850e-47 |
| Msa0362060 | Msa0370310 | 0.856774 | 2.563488e-62 | -8.615850e-47 |
| Msa0362060 | Msa0370870 | 0.895211 | 1.189086e-75 | -8.615850e-47 |
| Msa0362060 | Msa0377530 | 0.848238 | 6.961630e-60 | -8.615850e-47 |
| Msa0362060 | Msa0381220 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0362060 | Msa0388030 | -0.837436 | 5.205233e-57 | -8.615850e-47 |
| Msa0362060 | Msa0388710 | 0.824150 | 9.432405e-54 | -8.615850e-47 |
| Msa0362060 | Msa0389810 | 0.800865 | 1.179381e-48 | -8.615850e-47 |
| Msa0362060 | Msa0404220 | 0.805157 | 1.528663e-49 | -8.615850e-47 |
| Msa0362060 | Msa0404700 | 0.877536 | 5.807416e-69 | -8.615850e-47 |
| Msa0362060 | Msa0416320 | 0.945367 | 3.484878e-104 | -8.615850e-47 |
| Msa0362060 | Msa0419050 | 0.827762 | 1.307930e-54 | -8.615850e-47 |
| Msa0362060 | Msa0426810 | 0.880995 | 3.465280e-70 | -8.615850e-47 |
| Msa0362060 | Msa0431020 | 0.808959 | 2.396406e-50 | -8.615850e-47 |
| Msa0362060 | Msa0462540 | 0.862439 | 5.062652e-64 | -8.615850e-47 |
| Msa0362060 | Msa0464900 | 0.841185 | 5.538847e-58 | -8.615850e-47 |
| Msa0362060 | Msa0468130 | 0.810278 | 1.247831e-50 | -8.615850e-47 |
| Msa0362060 | Msa0471790 | 0.838149 | 3.414237e-57 | -8.615850e-47 |
| Msa0362060 | Msa0473240 | 0.801772 | 7.690672e-49 | -8.615850e-47 |
| Msa0362060 | Msa0475050 | 0.811312 | 7.456308e-51 | -8.615850e-47 |
| Msa0362060 | Msa0491500 | 0.813662 | 2.284946e-51 | -8.615850e-47 |
| Msa0362060 | Msa0491520 | 0.825125 | 5.558593e-54 | -8.615850e-47 |
| Msa0362060 | Msa0505060 | 0.810931 | 9.017903e-51 | -8.615850e-47 |
| Msa0362060 | Msa0508540 | 0.910266 | 2.269664e-82 | -8.615850e-47 |
| Msa0362060 | Msa0510560 | 0.838376 | 2.982824e-57 | -8.615850e-47 |
| Msa0362060 | Msa0517490 | 0.834373 | 3.112230e-56 | -8.615850e-47 |
| Msa0362060 | Msa0519390 | 0.813843 | 2.084193e-51 | -8.615850e-47 |
| Msa0362060 | Msa0527980 | -0.805496 | 1.298163e-49 | -8.615850e-47 |
| Msa0362060 | Msa0530380 | 0.829827 | 4.139754e-55 | -8.615850e-47 |
| Msa0362060 | Msa0578090 | 0.808670 | 2.763571e-50 | -8.615850e-47 |
| Msa0362060 | Msa0579340 | 0.836281 | 1.025802e-56 | -8.615850e-47 |
| Msa0362060 | Msa0579350 | 0.841777 | 3.869027e-58 | -8.615850e-47 |
| Msa0362060 | Msa0579370 | 0.817944 | 2.534957e-52 | -8.615850e-47 |
| Msa0362060 | Msa0581920 | 0.841733 | 3.972501e-58 | -8.615850e-47 |
| Msa0362060 | Msa0598560 | 0.866189 | 3.418674e-65 | -8.615850e-47 |
| Msa0362060 | Msa0609970 | 0.859173 | 4.968694e-63 | -8.615850e-47 |
| Msa0362060 | Msa0614990 | 0.855766 | 5.059546e-62 | -8.615850e-47 |
| Msa0362060 | Msa0622340 | 0.836106 | 1.136733e-56 | -8.615850e-47 |
| Msa0362060 | Msa0643250 | 0.800116 | 1.675715e-48 | -8.615850e-47 |
| Msa0362060 | Msa0650620 | 0.858596 | 7.392313e-63 | -8.615850e-47 |
| Msa0362060 | Msa0650650 | 0.820397 | 7.009711e-53 | -8.615850e-47 |
| Msa0362060 | Msa0650730 | 0.838203 | 3.305891e-57 | -8.615850e-47 |
| Msa0362060 | Msa0650740 | 0.830530 | 2.788301e-55 | -8.615850e-47 |
| Msa0362060 | Msa0651320 | 0.817814 | 2.712878e-52 | -8.615850e-47 |
| Msa0362060 | Msa0653320 | -0.807449 | 5.027066e-50 | -8.615850e-47 |
| Msa0362060 | Msa0664760 | 0.818327 | 2.077185e-52 | -8.615850e-47 |
| Msa0362060 | Msa0693490 | 0.800913 | 1.153005e-48 | -8.615850e-47 |
| Msa0362060 | Msa0713230 | 0.815363 | 9.607183e-52 | -8.615850e-47 |
| Msa0362060 | Msa0724950 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0362060 | Msa0755080 | 0.863394 | 2.569247e-64 | -8.615850e-47 |
| Msa0362060 | Msa0755090 | 0.824773 | 6.729579e-54 | -8.615850e-47 |
| Msa0362060 | Msa0757050 | 0.800511 | 1.392430e-48 | -8.615850e-47 |
| Msa0362060 | Msa0796950 | 0.837514 | 4.969266e-57 | -8.615850e-47 |
| Msa0362060 | Msa0799060 | 0.808420 | 3.124277e-50 | -8.615850e-47 |
| Msa0362060 | Msa0834450 | 0.872422 | 3.219824e-67 | -8.615850e-47 |
| Msa0362060 | Msa0834460 | 0.835013 | 2.148217e-56 | -8.615850e-47 |
| Msa0362060 | Msa0866800 | 0.843706 | 1.188277e-58 | -8.615850e-47 |
| Msa0362060 | Msa0876860 | -0.833049 | 6.666423e-56 | -8.615850e-47 |
| Msa0362060 | Msa0902800 | 0.828507 | 8.651325e-55 | -8.615850e-47 |
| Msa0362060 | Msa0908170 | 0.833404 | 5.436754e-56 | -8.615850e-47 |
| Msa0362060 | Msa0944730 | 0.897217 | 1.741612e-76 | -8.615850e-47 |
| Msa0362060 | Msa0946080 | 0.817472 | 3.240444e-52 | -8.615850e-47 |
| Msa0362060 | Msa0959010 | 0.804864 | 1.760687e-49 | -8.615850e-47 |
| Msa0362060 | Msa0982590 | 0.861246 | 1.174261e-63 | -8.615850e-47 |
| Msa0362060 | Msa1037020 | 0.828026 | 1.129876e-54 | -8.615850e-47 |
| Msa0362060 | Msa1048700 | 0.836936 | 6.985693e-57 | -8.615850e-47 |
| Msa0362060 | Msa1072530 | -0.805185 | 1.508384e-49 | -8.615850e-47 |
| Msa0362060 | Msa1077670 | 0.818546 | 1.852449e-52 | -8.615850e-47 |
| Msa0362060 | Msa1080750 | -0.806170 | 9.369999e-50 | -8.615850e-47 |
| Msa0362060 | Msa1129400 | 0.829560 | 4.807289e-55 | -8.615850e-47 |
| Msa0362060 | Msa1130210 | -0.808501 | 3.002914e-50 | -8.615850e-47 |
| Msa0362060 | Msa1160580 | 0.833923 | 4.035117e-56 | -8.615850e-47 |
| Msa0362060 | Msa1164530 | 0.840693 | 7.458492e-58 | -8.615850e-47 |
| Msa0362060 | Msa1174310 | 0.806882 | 6.627336e-50 | -8.615850e-47 |
| Msa0362060 | Msa1182630 | 0.827131 | 1.853143e-54 | -8.615850e-47 |
| Msa0362060 | Msa1182640 | 0.910626 | 1.516953e-82 | -8.615850e-47 |
| Msa0362060 | Msa1207460 | -0.809817 | 1.568676e-50 | -8.615850e-47 |
| Msa0362060 | Msa1215810 | -0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0362060 | Msa1218650 | 0.839864 | 1.227838e-57 | -8.615850e-47 |
| Msa0362060 | Msa1229850 | 0.867443 | 1.363077e-65 | -8.615850e-47 |
| Msa0362060 | Msa1235020 | 0.816831 | 4.515186e-52 | -8.615850e-47 |
| Msa0362060 | Msa1236070 | -0.846052 | 2.767707e-59 | -8.615850e-47 |
| Msa0362060 | Msa1260840 | -0.819730 | 9.961106e-53 | -8.615850e-47 |
| Msa0362060 | Msa1272520 | 0.911031 | 9.628164e-83 | -8.615850e-47 |
| Msa0362060 | Msa1307740 | 0.807726 | 4.390815e-50 | -8.615850e-47 |
| Msa0362060 | Msa1310660 | 0.902970 | 5.618047e-79 | -8.615850e-47 |
| Msa0362060 | Msa1314770 | 0.807036 | 6.149480e-50 | -8.615850e-47 |
| Msa0362060 | Msa1350690 | 0.881875 | 1.668370e-70 | -8.615850e-47 |
| Msa0362060 | Msa1360280 | 0.873716 | 1.185557e-67 | -8.615850e-47 |
| Msa0362060 | Msa1363700 | 0.824469 | 7.935022e-54 | -8.615850e-47 |
| Msa0362060 | Msa1371090 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0362060 | Msa1375700 | -0.837853 | 4.067682e-57 | -8.615850e-47 |
| Msa0362060 | Msa1383480 | 0.944301 | 2.508901e-103 | -8.615850e-47 |
| Msa0362060 | Msa1404720 | 0.835342 | 1.774002e-56 | -8.615850e-47 |
| Msa0362060 | Msa1419110 | 0.819569 | 1.084210e-52 | -8.615850e-47 |
| Msa0362060 | Msa1419860 | 0.812243 | 4.675428e-51 | -8.615850e-47 |
| Msa0362060 | Msa1422840 | 0.821035 | 5.001530e-53 | -8.615850e-47 |
| Msa0362060 | Msa1439230 | 0.821173 | 4.646582e-53 | -8.615850e-47 |
| Msa0362060 | Msa1442220 | -0.856829 | 2.469431e-62 | -8.615850e-47 |
| Msa0362060 | Msa1459760 | -0.824997 | 5.958835e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362060 | MtrunA17_Chr3g0112971 | 97.018 | 436 | 13 | 0 | 1 | 436 | 1 | 436 | 0.0 | 858 |
| Msa0362060 | MtrunA17_Chr5g0436281 | 77.546 | 383 | 86 | 0 | 54 | 436 | 1 | 383 | 0.0 | 626 |
| Msa0362060 | MtrunA17_Chr4g0058161 | 40.503 | 437 | 256 | 4 | 1 | 436 | 17 | 450 | 4.10e-113 | 339 |
| Msa0362060 | MtrunA17_Chr1g0184721 | 32.405 | 395 | 250 | 7 | 54 | 436 | 51 | 440 | 2.55e-51 | 179 |
| Msa0362060 | MtrunA17_Chr1g0198081 | 30.184 | 434 | 268 | 11 | 25 | 435 | 59 | 480 | 1.75e-45 | 164 |
| Msa0362060 | MtrunA17_Chr8g0387941 | 27.689 | 437 | 270 | 12 | 26 | 433 | 28 | 447 | 1.05e-43 | 159 |
| Msa0362060 | MtrunA17_Chr4g0027241 | 29.909 | 438 | 264 | 13 | 26 | 436 | 41 | 462 | 1.02e-41 | 153 |
| Msa0362060 | MtrunA17_Chr6g0459011 | 29.620 | 395 | 245 | 13 | 54 | 429 | 13 | 393 | 5.56e-26 | 108 |
| Msa0362060 | MtrunA17_Chr6g0458931 | 26.180 | 466 | 288 | 17 | 5 | 434 | 10 | 455 | 2.02e-25 | 107 |
| Msa0362060 | MtrunA17_Chr5g0422741 | 28.535 | 396 | 256 | 11 | 54 | 433 | 54 | 438 | 1.34e-24 | 105 |
| Msa0362060 | MtrunA17_Chr2g0331721 | 26.000 | 450 | 277 | 15 | 20 | 433 | 31 | 460 | 1.88e-24 | 105 |
| Msa0362060 | MtrunA17_Chr6g0459021 | 27.617 | 449 | 292 | 14 | 2 | 434 | 16 | 447 | 5.04e-24 | 103 |
| Msa0362060 | MtrunA17_Chr1g0198531 | 27.157 | 394 | 264 | 8 | 54 | 433 | 52 | 436 | 8.91e-24 | 102 |
| Msa0362060 | MtrunA17_Chr4g0057851 | 26.108 | 406 | 280 | 10 | 39 | 432 | 24 | 421 | 3.11e-23 | 101 |
| Msa0362060 | MtrunA17_Chr8g0376991 | 25.500 | 400 | 265 | 14 | 54 | 434 | 51 | 436 | 3.01e-22 | 98.6 |
| Msa0362060 | MtrunA17_Chr1g0198541 | 27.778 | 396 | 259 | 12 | 54 | 433 | 52 | 436 | 6.01e-22 | 97.8 |
| Msa0362060 | MtrunA17_Chr3g0122921 | 26.281 | 449 | 276 | 16 | 12 | 434 | 9 | 428 | 8.24e-22 | 97.1 |
| Msa0362060 | MtrunA17_Chr2g0328081 | 26.923 | 390 | 273 | 8 | 54 | 434 | 42 | 428 | 1.34e-21 | 96.7 |
| Msa0362060 | MtrunA17_Chr3g0130641 | 25.591 | 465 | 299 | 15 | 7 | 435 | 22 | 475 | 1.65e-21 | 96.7 |
| Msa0362060 | MtrunA17_Chr8g0384661 | 26.134 | 463 | 286 | 17 | 12 | 433 | 43 | 490 | 3.02e-21 | 95.9 |
| Msa0362060 | MtrunA17_Chr6g0458921 | 27.877 | 391 | 268 | 10 | 54 | 434 | 42 | 428 | 5.07e-21 | 94.7 |
| Msa0362060 | MtrunA17_Chr3g0125091 | 26.767 | 467 | 286 | 16 | 9 | 433 | 24 | 476 | 5.73e-21 | 95.1 |
| Msa0362060 | MtrunA17_Chr3g0077651 | 24.688 | 401 | 265 | 12 | 57 | 434 | 83 | 469 | 1.42e-20 | 94.0 |
| Msa0362060 | MtrunA17_Chr3g0140761 | 24.947 | 469 | 303 | 17 | 8 | 433 | 16 | 478 | 3.68e-20 | 92.8 |
| Msa0362060 | MtrunA17_Chr3g0130651 | 27.033 | 418 | 257 | 16 | 9 | 390 | 16 | 421 | 5.35e-20 | 92.0 |
| Msa0362060 | MtrunA17_Chr1g0159761 | 27.251 | 422 | 257 | 15 | 9 | 390 | 17 | 428 | 8.00e-20 | 91.7 |
| Msa0362060 | MtrunA17_Chr4g0037201 | 25.887 | 479 | 288 | 19 | 7 | 433 | 45 | 508 | 1.23e-19 | 91.3 |
| Msa0362060 | MtrunA17_Chr6g0459031 | 28.244 | 393 | 264 | 12 | 54 | 434 | 42 | 428 | 1.32e-19 | 90.5 |
| Msa0362060 | MtrunA17_Chr1g0206871 | 25.966 | 466 | 275 | 18 | 27 | 435 | 17 | 469 | 2.08e-19 | 90.1 |
| Msa0362060 | MtrunA17_Chr7g0230011 | 28.117 | 409 | 243 | 15 | 54 | 434 | 58 | 443 | 2.24e-19 | 90.1 |
| Msa0362060 | MtrunA17_Chr3g0125081 | 26.652 | 469 | 289 | 16 | 9 | 436 | 24 | 478 | 2.85e-19 | 90.1 |
| Msa0362060 | MtrunA17_Chr1g0146491 | 25.902 | 471 | 296 | 20 | 8 | 433 | 6 | 468 | 6.60e-19 | 89.0 |
| Msa0362060 | MtrunA17_Chr3g0125101 | 26.526 | 426 | 256 | 16 | 57 | 436 | 65 | 479 | 6.89e-19 | 89.0 |
| Msa0362060 | MtrunA17_Chr3g0143701 | 25.833 | 360 | 242 | 12 | 57 | 395 | 115 | 470 | 4.88e-16 | 80.1 |
| Msa0362060 | MtrunA17_Chr4g0027261 | 30.500 | 200 | 113 | 6 | 250 | 436 | 1 | 187 | 1.15e-15 | 75.1 |
| Msa0362060 | MtrunA17_Chr4g0038711 | 25.062 | 403 | 254 | 16 | 57 | 424 | 101 | 490 | 1.68e-15 | 78.6 |
| Msa0362060 | MtrunA17_Chr6g0459001 | 25.986 | 431 | 265 | 12 | 54 | 434 | 50 | 476 | 1.94e-15 | 78.2 |
| Msa0362060 | MtrunA17_Chr1g0146391 | 23.095 | 420 | 279 | 13 | 54 | 434 | 40 | 454 | 2.81e-15 | 77.8 |
| Msa0362060 | MtrunA17_Chr3g0103231 | 25.858 | 379 | 225 | 15 | 57 | 390 | 54 | 421 | 1.04e-14 | 75.9 |
| Msa0362060 | MtrunA17_Chr2g0293331 | 23.810 | 420 | 270 | 14 | 57 | 434 | 43 | 454 | 1.32e-14 | 75.5 |
| Msa0362060 | MtrunA17_Chr5g0430221 | 68.085 | 47 | 15 | 0 | 146 | 192 | 1 | 47 | 2.08e-14 | 70.5 |
| Msa0362060 | MtrunA17_Chr5g0406331 | 25.654 | 382 | 254 | 13 | 37 | 396 | 99 | 472 | 2.93e-14 | 74.7 |
| Msa0362060 | MtrunA17_Chr5g0447221 | 23.765 | 425 | 271 | 17 | 37 | 420 | 41 | 453 | 3.71e-13 | 71.2 |
| Msa0362060 | MtrunA17_Chr3g0103211 | 23.592 | 373 | 241 | 15 | 57 | 390 | 54 | 421 | 5.71e-13 | 70.5 |
| Msa0362060 | MtrunA17_Chr1g0146411 | 23.932 | 468 | 310 | 18 | 3 | 433 | 11 | 469 | 7.45e-13 | 70.1 |
| Msa0362060 | MtrunA17_Chr3g0103221 | 25.393 | 382 | 223 | 18 | 57 | 390 | 61 | 428 | 1.19e-12 | 69.7 |
| Msa0362060 | MtrunA17_Chr1g0206831 | 28.000 | 300 | 172 | 11 | 166 | 432 | 51 | 339 | 4.23e-12 | 67.0 |
| Msa0362060 | MtrunA17_Chr3g0103271 | 23.575 | 386 | 255 | 13 | 37 | 385 | 39 | 421 | 1.84e-11 | 65.9 |
| Msa0362060 | MtrunA17_Chr3g0140531 | 23.474 | 426 | 264 | 15 | 57 | 433 | 55 | 467 | 8.51e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0362060 | AT2G39890.2 | 71.230 | 431 | 122 | 1 | 6 | 436 | 14 | 442 | 0.0 | 654 |
| Msa0362060 | AT2G39890.1 | 71.230 | 431 | 122 | 1 | 6 | 436 | 14 | 442 | 0.0 | 654 |
| Msa0362060 | AT3G55740.1 | 71.734 | 421 | 119 | 0 | 16 | 436 | 19 | 439 | 0.0 | 645 |
| Msa0362060 | AT2G36590.1 | 68.519 | 432 | 132 | 1 | 9 | 436 | 5 | 436 | 0.0 | 623 |
| Msa0362060 | AT2G39890.3 | 71.018 | 383 | 111 | 0 | 54 | 436 | 1 | 383 | 0.0 | 583 |
| Msa0362060 | AT3G55740.2 | 70.757 | 383 | 112 | 0 | 54 | 436 | 1 | 383 | 0.0 | 576 |
| Msa0362060 | AT3G55740.3 | 70.757 | 383 | 112 | 0 | 54 | 436 | 1 | 383 | 0.0 | 576 |
| Msa0362060 | AT2G36590.2 | 68.254 | 315 | 96 | 1 | 9 | 319 | 5 | 319 | 4.39e-164 | 465 |
| Msa0362060 | AT1G08230.2 | 30.022 | 463 | 282 | 13 | 2 | 436 | 3 | 451 | 4.88e-45 | 162 |
| Msa0362060 | AT5G41800.1 | 27.169 | 438 | 275 | 12 | 26 | 435 | 27 | 448 | 6.80e-37 | 140 |
| Msa0362060 | AT1G08230.4 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.42e-34 | 129 |
| Msa0362060 | AT1G08230.6 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.42e-34 | 129 |
| Msa0362060 | AT1G08230.5 | 31.707 | 328 | 198 | 8 | 127 | 436 | 13 | 332 | 9.42e-34 | 129 |
| Msa0362060 | AT1G08230.3 | 31.707 | 328 | 198 | 8 | 127 | 436 | 32 | 351 | 1.21e-33 | 129 |
| Msa0362060 | AT1G24400.1 | 27.136 | 398 | 261 | 12 | 54 | 434 | 56 | 441 | 3.88e-25 | 107 |
| Msa0362060 | AT5G40780.1 | 25.275 | 455 | 298 | 12 | 8 | 434 | 6 | 446 | 7.34e-25 | 106 |
| Msa0362060 | AT5G40780.3 | 26.382 | 398 | 264 | 9 | 54 | 434 | 13 | 398 | 1.26e-24 | 105 |
| Msa0362060 | AT5G40780.2 | 26.382 | 398 | 264 | 9 | 54 | 434 | 13 | 398 | 1.26e-24 | 105 |
| Msa0362060 | AT1G67640.1 | 25.385 | 390 | 278 | 9 | 54 | 434 | 56 | 441 | 1.51e-22 | 99.8 |
| Msa0362060 | AT5G09220.1 | 26.492 | 419 | 261 | 13 | 57 | 433 | 76 | 489 | 1.12e-21 | 97.8 |
| Msa0362060 | AT1G48640.1 | 25.431 | 464 | 301 | 15 | 1 | 434 | 5 | 453 | 2.03e-21 | 96.7 |
| Msa0362060 | AT5G63850.1 | 24.841 | 471 | 289 | 18 | 7 | 433 | 13 | 462 | 1.38e-20 | 94.4 |
| Msa0362060 | AT1G25530.1 | 28.715 | 397 | 256 | 11 | 54 | 434 | 55 | 440 | 3.73e-20 | 92.8 |
| Msa0362060 | AT1G71680.1 | 25.885 | 452 | 303 | 13 | 2 | 434 | 10 | 448 | 1.25e-19 | 91.3 |
| Msa0362060 | AT1G44100.1 | 27.197 | 478 | 276 | 23 | 9 | 433 | 18 | 476 | 3.09e-19 | 90.1 |
| Msa0362060 | AT1G77380.1 | 26.329 | 395 | 241 | 17 | 57 | 410 | 60 | 445 | 1.30e-17 | 85.1 |
| Msa0362060 | AT1G58360.1 | 24.211 | 475 | 302 | 15 | 6 | 433 | 17 | 480 | 1.68e-17 | 85.1 |
| Msa0362060 | AT3G01760.1 | 24.719 | 445 | 298 | 12 | 6 | 423 | 3 | 437 | 3.24e-17 | 84.0 |
| Msa0362060 | AT1G61270.1 | 25.517 | 435 | 290 | 13 | 7 | 420 | 13 | 434 | 8.58e-17 | 82.8 |
| Msa0362060 | AT1G10010.2 | 26.042 | 480 | 290 | 20 | 4 | 436 | 14 | 475 | 1.41e-15 | 79.0 |
| Msa0362060 | AT1G10010.1 | 27.523 | 436 | 256 | 19 | 4 | 394 | 13 | 433 | 1.61e-15 | 79.0 |
| Msa0362060 | AT1G71680.2 | 26.269 | 335 | 229 | 11 | 2 | 323 | 10 | 339 | 6.25e-15 | 76.3 |
Find 132 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATTTGATGAGCAGTTTC+TGG | 0.188300 | 3_1:-52896517 | None:intergenic |
| AAATACTGGTTACATCATTT+TGG | 0.194408 | 3_1:+52898244 | Msa0362060:CDS |
| TGGTTACCTTTGCAGGATAC+TGG | 0.253653 | 3_1:+52899330 | Msa0362060:CDS |
| TTATTTAATTGTAGGTAAAA+AGG | 0.256204 | 3_1:+52898175 | Msa0362060:intron |
| ACTAAAATATTCACAACAAT+TGG | 0.270885 | 3_1:+52899078 | Msa0362060:CDS |
| ATCTTTCAGCTCTTGGAGTT+TGG | 0.276364 | 3_1:+52898679 | Msa0362060:CDS |
| AAGTCCGATGTATGAGTATT+TGG | 0.293374 | 3_1:+52899568 | Msa0362060:CDS |
| GAAGAAGTAGCTTAAATTTA+CGG | 0.297415 | 3_1:+52896385 | Msa0362060:five_prime_UTR |
| AGCCGCTATGAATGTGTTAA+AGG | 0.301338 | 3_1:-52899672 | None:intergenic |
| ATTCCTCATCTTTCAGCTCT+TGG | 0.319082 | 3_1:+52898672 | Msa0362060:CDS |
| TGGTTCCTCTTGGTTGGGTA+GGG | 0.321672 | 3_1:+52897946 | Msa0362060:CDS |
| TCTTTGCCTTGTAGTACATA+TGG | 0.322707 | 3_1:-52899772 | None:intergenic |
| ATTGCTATGCTCCATGAATA+TGG | 0.328776 | 3_1:+52898023 | Msa0362060:CDS |
| ATGTACATGGTTACCTTTGC+AGG | 0.331651 | 3_1:+52899323 | Msa0362060:CDS |
| TTTGCAGGATACTGGGCTTA+TGG | 0.333787 | 3_1:+52899338 | Msa0362060:CDS |
| TGGATACTCAGGGACCATTA+TGG | 0.339605 | 3_1:+52897926 | Msa0362060:CDS |
| CCATTATGGTTCCTCTTGGT+TGG | 0.339833 | 3_1:+52897940 | Msa0362060:CDS |
| TTCATCATGTTCTTGACAAC+TGG | 0.353000 | 3_1:-52899263 | None:intergenic |
| TCAGCTCTTGGAGTTTGGTT+GGG | 0.354431 | 3_1:+52898684 | Msa0362060:CDS |
| GATCTTGCTGGATATATATA+TGG | 0.362894 | 3_1:+52898071 | Msa0362060:CDS |
| TTCAGCTCTTGGAGTTTGGT+TGG | 0.369188 | 3_1:+52898683 | Msa0362060:CDS |
| TTGAAGGAAGGCTGTAATAT+TGG | 0.378244 | 3_1:-52899423 | None:intergenic |
| GTGCACGCTATTCAGCAAAT+AGG | 0.379972 | 3_1:-52899375 | None:intergenic |
| GTCTTGTCCCTCCATATTCA+TGG | 0.380371 | 3_1:-52898034 | None:intergenic |
| TGTAACCCTCATACACTATA+TGG | 0.386627 | 3_1:-52900145 | None:intergenic |
| CTAAAATATTCACAACAATT+GGG | 0.390597 | 3_1:+52899079 | Msa0362060:CDS |
| CCATCATCATGAATCTTGTT+AGG | 0.396564 | 3_1:-52896484 | None:intergenic |
| TCCAGCTTGGGTGAAAGCTT+TGG | 0.397072 | 3_1:+52899400 | Msa0362060:CDS |
| CATTATGGTTCCTCTTGGTT+GGG | 0.403721 | 3_1:+52897941 | Msa0362060:CDS |
| ACAACTTCAGAACAGAATAT+TGG | 0.410134 | 3_1:+52896358 | Msa0362060:five_prime_UTR |
| TGTATGAGGGTTACACTATC+AGG | 0.410209 | 3_1:+52900153 | Msa0362060:three_prime_UTR |
| ATGGTTCCTCTTGGTTGGGT+AGG | 0.416120 | 3_1:+52897945 | Msa0362060:CDS |
| GCCAAAGCTTTCACCCAAGC+TGG | 0.426229 | 3_1:-52899401 | None:intergenic |
| GGTTCCTCTTGGTTGGGTAG+GGG | 0.426770 | 3_1:+52897947 | Msa0362060:CDS |
| TAATTTGATGAGCAGTTTCT+GGG | 0.429639 | 3_1:-52896516 | None:intergenic |
| CGGCATGCTTCCTGAGATAC+AGG | 0.431193 | 3_1:+52899134 | Msa0362060:CDS |
| GTGGGATGTGTCCTCACTAC+TGG | 0.431656 | 3_1:+52897882 | Msa0362060:CDS |
| GCGGCTCTTCTGCCATTCCT+TGG | 0.436629 | 3_1:+52899689 | Msa0362060:CDS |
| GTTCCTCTTGGTTGGGTAGG+GGG | 0.437185 | 3_1:+52897948 | Msa0362060:CDS |
| AAATGCTTTCATTGTTGGAT+AGG | 0.440493 | 3_1:+52900001 | Msa0362060:three_prime_UTR |
| ATCATTGGTTGTTACGTTGA+AGG | 0.441028 | 3_1:+52896264 | Msa0362060:five_prime_UTR |
| GTGTACAGAAGGGAGGGCTC+TGG | 0.447589 | 3_1:+52899810 | Msa0362060:CDS |
| GTCTATCTGACCTGTATCTC+AGG | 0.450002 | 3_1:-52899144 | None:intergenic |
| CTGTGGTTTCAGTTTACCAT+TGG | 0.450914 | 3_1:+52899290 | Msa0362060:CDS |
| AATGCACCATATAGTGTATG+AGG | 0.456813 | 3_1:+52900139 | Msa0362060:three_prime_UTR |
| TCATTTAGAGTCGGAGTAAG+AGG | 0.457265 | 3_1:+52899638 | Msa0362060:CDS |
| GGGACCATTATGGTTCCTCT+TGG | 0.458907 | 3_1:+52897936 | Msa0362060:CDS |
| TAGCGTGCACGGTCCAGCTT+GGG | 0.462680 | 3_1:+52899388 | Msa0362060:CDS |
| TCTGTTGAAAAGACAACTCT+TGG | 0.464829 | 3_1:+52900054 | Msa0362060:three_prime_UTR |
| GCTTATGTGCTTGGATACTC+AGG | 0.465982 | 3_1:+52897915 | Msa0362060:CDS |
| CCGTACTGCATTGCTATAGC+TGG | 0.473359 | 3_1:+52898621 | Msa0362060:CDS |
| CCACCTACGGTAACAACAAT+GGG | 0.475476 | 3_1:+52896445 | Msa0362060:exon |
| CCCATTGTTGTTACCGTAGG+TGG | 0.481174 | 3_1:-52896445 | None:intergenic |
| CGGAGTAAGAGGTGGTTACC+TGG | 0.486173 | 3_1:+52899649 | Msa0362060:CDS |
| TGTATACATTGTCATAGCAT+TGG | 0.487225 | 3_1:+52898728 | Msa0362060:CDS |
| ATTAGATACAGAGATCTTGC+TGG | 0.488924 | 3_1:+52898059 | Msa0362060:CDS |
| TCATTGGTTGTTACGTTGAA+GGG | 0.493431 | 3_1:+52896265 | Msa0362060:five_prime_UTR |
| GGTTACCTTTGCAGGATACT+GGG | 0.495231 | 3_1:+52899331 | Msa0362060:CDS |
| GTCAACAGTGCTTATGTGCT+TGG | 0.495512 | 3_1:+52897906 | Msa0362060:CDS |
| GACAACTGGCTGCTTAATTG+TGG | 0.498032 | 3_1:-52899249 | None:intergenic |
| GGATATCGATACGATATCAT+TGG | 0.501208 | 3_1:+52896249 | Msa0362060:five_prime_UTR |
| GAGTATTTGGATACTAGATA+CGG | 0.506955 | 3_1:+52899581 | Msa0362060:CDS |
| ATAGCGTGCACGGTCCAGCT+TGG | 0.509613 | 3_1:+52899387 | Msa0362060:CDS |
| CAGCAACTGTTGCGGCAGTA+CGG | 0.519965 | 3_1:+52899867 | Msa0362060:CDS |
| TTACCCATTGTTGTTACCGT+AGG | 0.520185 | 3_1:-52896448 | None:intergenic |
| TTTGAGATCTCTCATACCGC+TGG | 0.525161 | 3_1:+52896322 | Msa0362060:five_prime_UTR |
| TGTACAGAAGGGAGGGCTCT+GGG | 0.526001 | 3_1:+52899811 | Msa0362060:CDS |
| ACAACAATTGCCACCACCTA+CGG | 0.529612 | 3_1:+52896432 | Msa0362060:five_prime_UTR |
| TGGACTTGTACCAATGTACA+TGG | 0.531370 | 3_1:+52899310 | Msa0362060:CDS |
| TATACCGTGTTTCGAGATGA+TGG | 0.534072 | 3_1:+52898585 | Msa0362060:CDS |
| CAAACTATCAAGTGTACAGA+AGG | 0.534807 | 3_1:+52899799 | Msa0362060:CDS |
| TGAAAGATGAGGAATGCAAA+TGG | 0.537838 | 3_1:-52898664 | None:intergenic |
| CCAACCAAGAGGAACCATAA+TGG | 0.541448 | 3_1:-52897940 | None:intergenic |
| AATGCTTATATATAGAAGAC+AGG | 0.542308 | 3_1:+52896297 | Msa0362060:five_prime_UTR |
| GTAATGCAATGACTGATTGA+AGG | 0.542448 | 3_1:-52899439 | None:intergenic |
| CTAGTGTTCGCATACAATAC+CGG | 0.545518 | 3_1:+52899114 | Msa0362060:CDS |
| CTATGAATGTGTTAAAGGCC+AGG | 0.545650 | 3_1:-52899667 | None:intergenic |
| CTCTCGAAATCTCCAAGGAA+TGG | 0.547393 | 3_1:-52899701 | None:intergenic |
| GGAGATTTCGAGAGTCTCAC+AGG | 0.554644 | 3_1:+52899710 | Msa0362060:CDS |
| TGCAGATTCATGGTTTCAAG+TGG | 0.558255 | 3_1:+52897863 | Msa0362060:intron |
| AAGAACTTGTCATTTAGAGT+CGG | 0.561515 | 3_1:+52899629 | Msa0362060:CDS |
| ACCACCTACGGTAACAACAA+TGG | 0.561583 | 3_1:+52896444 | Msa0362060:exon |
| TAAAATATTCACAACAATTG+GGG | 0.565223 | 3_1:+52899080 | Msa0362060:CDS |
| GTATCCAAATACTCATACAT+CGG | 0.565959 | 3_1:-52899572 | None:intergenic |
| CCTAACAAGATTCATGATGA+TGG | 0.566611 | 3_1:+52896484 | Msa0362060:CDS |
| AAAAGGCATATTCTATCACA+TGG | 0.568216 | 3_1:+52898192 | Msa0362060:CDS |
| GATCAGTGGAGAAGCAATGA+AGG | 0.569332 | 3_1:+52899604 | Msa0362060:CDS |
| ACTTCAGAACAGAATATTGG+TGG | 0.573977 | 3_1:+52896361 | Msa0362060:five_prime_UTR |
| ATTGTTGTTACCGTAGGTGG+TGG | 0.574248 | 3_1:-52896442 | None:intergenic |
| GTCTATTGCAGCAACTGTTG+CGG | 0.576459 | 3_1:+52899859 | Msa0362060:CDS |
| TTGCAAGAATAAATGTAAGC+GGG | 0.576732 | 3_1:-52899748 | None:intergenic |
| ACAACAATGGGTAAAGGAAG+AGG | 0.581226 | 3_1:+52896457 | Msa0362060:exon |
| GGAACAGTGTAATCTCGAGC+AGG | 0.584265 | 3_1:-52899042 | None:intergenic |
| CAATGGTAAACTGAAACCAC+AGG | 0.585074 | 3_1:-52899289 | None:intergenic |
| ACGGTAACAACAATGGGTAA+AGG | 0.586107 | 3_1:+52896451 | Msa0362060:exon |
| CTGTATCTCAGGAAGCATGC+CGG | 0.587899 | 3_1:-52899133 | None:intergenic |
| GAGGCTAAAGAAAACAATGT+TGG | 0.588227 | 3_1:-52899834 | None:intergenic |
| TTGGTGCTGTCGATTAAAGA+TGG | 0.589660 | 3_1:+52898747 | Msa0362060:CDS |
| GTTACACTATCAGGTTCAGT+TGG | 0.590434 | 3_1:+52900162 | Msa0362060:three_prime_UTR |
| GCAGATTCATGGTTTCAAGT+GGG | 0.595461 | 3_1:+52897864 | Msa0362060:intron |
| AGTATTTGGATACTAGATAC+GGG | 0.598892 | 3_1:+52899582 | Msa0362060:CDS |
| GATACTAGATACGGGATCAG+TGG | 0.600042 | 3_1:+52899590 | Msa0362060:CDS |
| TGCAAACCATATGTACTACA+AGG | 0.605665 | 3_1:+52899766 | Msa0362060:CDS |
| TGCTATGACAATGTATACAA+AGG | 0.606274 | 3_1:-52898724 | None:intergenic |
| ACTGCTCATCAAATTAGCAC+CGG | 0.606729 | 3_1:+52896523 | Msa0362060:CDS |
| GATTACACTGTTCCAGAACA+CGG | 0.606932 | 3_1:+52899051 | Msa0362060:CDS |
| CACACCATCATCTCGAAACA+CGG | 0.612096 | 3_1:-52898589 | None:intergenic |
| TATCAAGTGTACAGAAGGGA+GGG | 0.613459 | 3_1:+52899804 | Msa0362060:CDS |
| CTATGCTCCATGAATATGGA+GGG | 0.617895 | 3_1:+52898027 | Msa0362060:CDS |
| TATTTGCTGAATAGCGTGCA+CGG | 0.618514 | 3_1:+52899377 | Msa0362060:CDS |
| CCAGCTATAGCAATGCAGTA+CGG | 0.625491 | 3_1:-52898621 | None:intergenic |
| GCTATGCTCCATGAATATGG+AGG | 0.628110 | 3_1:+52898026 | Msa0362060:CDS |
| ATTAGCATAGAGCGAAATCG+CGG | 0.629033 | 3_1:-52897994 | None:intergenic |
| CACTGTTGACTCCAGTAGTG+AGG | 0.634084 | 3_1:-52897893 | None:intergenic |
| GTACATTGGTACAAGTCCAA+TGG | 0.635192 | 3_1:-52899306 | None:intergenic |
| ACTCCAAGAGCTGAAAGATG+AGG | 0.637059 | 3_1:-52898675 | None:intergenic |
| TTTGCAAGAATAAATGTAAG+CGG | 0.638473 | 3_1:-52899749 | None:intergenic |
| TGAGACTCTCGAAATCTCCA+AGG | 0.640360 | 3_1:-52899706 | None:intergenic |
| CTTATGTGCTTGGATACTCA+GGG | 0.644689 | 3_1:+52897916 | Msa0362060:CDS |
| TTTAGAGTCGGAGTAAGAGG+TGG | 0.647394 | 3_1:+52899641 | Msa0362060:CDS |
| TGCAATGACTGATTGAAGGA+AGG | 0.648266 | 3_1:-52899435 | None:intergenic |
| CTATCAAGTGTACAGAAGGG+AGG | 0.648468 | 3_1:+52899803 | Msa0362060:CDS |
| ATAAGCCCAGTATCCTGCAA+AGG | 0.654594 | 3_1:-52899336 | None:intergenic |
| ATGCACCATATAGTGTATGA+GGG | 0.655597 | 3_1:+52900140 | Msa0362060:three_prime_UTR |
| GCAAAGGTAACCATGTACAT+TGG | 0.656882 | 3_1:-52899320 | None:intergenic |
| CAGTTGCTGCAATAGACATG+AGG | 0.663766 | 3_1:-52899853 | None:intergenic |
| AAACTATCAAGTGTACAGAA+GGG | 0.684291 | 3_1:+52899800 | Msa0362060:CDS |
| AAAGGCATATTCTATCACAT+GGG | 0.685218 | 3_1:+52898193 | Msa0362060:CDS |
| GGCCTTTAACACATTCATAG+CGG | 0.702664 | 3_1:+52899670 | Msa0362060:CDS |
| TGTTGATAAGAATCAACCAG+CGG | 0.728252 | 3_1:-52896338 | None:intergenic |
| AATGGTAAACTGAAACCACA+GGG | 0.745661 | 3_1:-52899288 | None:intergenic |
| AGAACATGATGAAATCCCTG+TGG | 0.754118 | 3_1:+52899273 | Msa0362060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAAAGGAAAAATTA+AGG | - | chr3_1:52896568-52896587 | None:intergenic | 10.0% |
| !!! | GTTTTATATTTAATTTTGAA+AGG | + | chr3_1:52896608-52896627 | Msa0362060:intron | 10.0% |
| !!! | CAACAAAATAATATTTTTTT+TGG | - | chr3_1:52896965-52896984 | None:intergenic | 10.0% |
| !!! | AATAAAAATTTAGAATATAC+AGG | + | chr3_1:52897588-52897607 | Msa0362060:intron | 10.0% |
| !!! | AATTAACTAATTTTTTTTTC+TGG | + | chr3_1:52897795-52897814 | Msa0362060:intron | 10.0% |
| !!! | TTTTCATTTTATTTAATTGT+AGG | + | chr3_1:52898167-52898186 | Msa0362060:intron | 10.0% |
| !!! | AATATACAATTTTAATTGAA+TGG | - | chr3_1:52898305-52898324 | None:intergenic | 10.0% |
| !!! | TTCTATATATAAGCATTTTT+TGG | - | chr3_1:52896294-52896313 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGAGTTTAATGA+TGG | + | chr3_1:52897083-52897102 | Msa0362060:intron | 15.0% |
| !! | ATTTATCAAAACATTTAGAA+TGG | + | chr3_1:52897129-52897148 | Msa0362060:intron | 15.0% |
| !!! | TGTGTAAAATAATTTTTCAA+TGG | + | chr3_1:52897317-52897336 | Msa0362060:intron | 15.0% |
| !!! | TTTACTGTTTTAATTTTAAC+TGG | + | chr3_1:52897825-52897844 | Msa0362060:intron | 15.0% |
| !!! | TTACTGTTTTAATTTTAACT+GGG | + | chr3_1:52897826-52897845 | Msa0362060:intron | 15.0% |
| !! | TTATTTAATTGTAGGTAAAA+AGG | + | chr3_1:52898175-52898194 | Msa0362060:intron | 15.0% |
| !!! | TTGAGTATTATTTTTTGTAA+AGG | + | chr3_1:52898441-52898460 | Msa0362060:intron | 15.0% |
| !! | AAAAGGAAAAATTAAGGTTA+TGG | - | chr3_1:52896562-52896581 | None:intergenic | 20.0% |
| !! | ATGTAAACAAAAACAAACAT+AGG | - | chr3_1:52896853-52896872 | None:intergenic | 20.0% |
| !!! | TATTTTAATATTTGCAAGAG+TGG | - | chr3_1:52897247-52897266 | None:intergenic | 20.0% |
| !!! | AACTGAAGAAGTATATTAAA+GGG | - | chr3_1:52897775-52897794 | None:intergenic | 20.0% |
| !!! | TAACTGAAGAAGTATATTAA+AGG | - | chr3_1:52897776-52897795 | None:intergenic | 20.0% |
| !! | GGATATATATATGGTAAATA+AGG | + | chr3_1:52898080-52898099 | Msa0362060:intron | 20.0% |
| !!! | AATCTTTTCATGATAAATAC+TGG | + | chr3_1:52898230-52898249 | Msa0362060:CDS | 20.0% |
| !! | TTTGAAAGTAAGAGAAATAT+AGG | + | chr3_1:52898277-52898296 | Msa0362060:intron | 20.0% |
| !! | GTTATTTAGTAAAGAAAGTT+TGG | - | chr3_1:52898374-52898393 | None:intergenic | 20.0% |
| !!! | TTAGTCCATCATATTTTAAT+CGG | - | chr3_1:52898420-52898439 | None:intergenic | 20.0% |
| !!! | ATTTTTTGTAAAGGACTAAA+AGG | + | chr3_1:52898450-52898469 | Msa0362060:intron | 20.0% |
| !!! | TTTAGATAAGTGGATTATTA+TGG | - | chr3_1:52898858-52898877 | None:intergenic | 20.0% |
| !! | ACTAAAATATTCACAACAAT+TGG | + | chr3_1:52899078-52899097 | Msa0362060:CDS | 20.0% |
| !! | CTAAAATATTCACAACAATT+GGG | + | chr3_1:52899079-52899098 | Msa0362060:CDS | 20.0% |
| !! | TAAAATATTCACAACAATTG+GGG | + | chr3_1:52899080-52899099 | Msa0362060:CDS | 20.0% |
| !! | TGAAACTTAATATGAAGATA+TGG | - | chr3_1:52899182-52899201 | None:intergenic | 20.0% |
| !!! | ATTTTAAATGCTTTCATTGT+TGG | + | chr3_1:52899996-52900015 | Msa0362060:three_prime_UTR | 20.0% |
| ! | AATGCTTATATATAGAAGAC+AGG | + | chr3_1:52896297-52896316 | Msa0362060:five_prime_UTR | 25.0% |
| ! | GAAGAAGTAGCTTAAATTTA+CGG | + | chr3_1:52896385-52896404 | Msa0362060:five_prime_UTR | 25.0% |
| ! | TTTGAAAATTCCCATGTTTA+TGG | + | chr3_1:52896648-52896667 | Msa0362060:intron | 25.0% |
| !!! | TTTGTTTTTCTTTCCAAACA+AGG | + | chr3_1:52896783-52896802 | Msa0362060:intron | 25.0% |
| !!! | TTGTTTTTCTTTCCAAACAA+GGG | + | chr3_1:52896784-52896803 | Msa0362060:intron | 25.0% |
| ! | AACATAGGTAAACTACAAAA+GGG | - | chr3_1:52896838-52896857 | None:intergenic | 25.0% |
| ! | AAACATAGGTAAACTACAAA+AGG | - | chr3_1:52896839-52896858 | None:intergenic | 25.0% |
| !! | ACTGAAGAAGTATATTAAAG+GGG | - | chr3_1:52897774-52897793 | None:intergenic | 25.0% |
| !! | AGATTTCTAATGTGTTTTGT+TGG | - | chr3_1:52898106-52898125 | None:intergenic | 25.0% |
| !!! | AAATACTGGTTACATCATTT+TGG | + | chr3_1:52898244-52898263 | Msa0362060:CDS | 25.0% |
| !!! | AAGTTTGGATTAGTTTTTGT+CGG | - | chr3_1:52898359-52898378 | None:intergenic | 25.0% |
| ! | TAATGAGTAAAGACTCAATT+CGG | - | chr3_1:52898498-52898517 | None:intergenic | 25.0% |
| !! | TATTTGTTAATGTAACTTGC+AGG | + | chr3_1:52899226-52899245 | Msa0362060:intron | 25.0% |
| ! | TTTGCAAGAATAAATGTAAG+CGG | - | chr3_1:52899752-52899771 | None:intergenic | 25.0% |
| ACAACTTCAGAACAGAATAT+TGG | + | chr3_1:52896358-52896377 | Msa0362060:five_prime_UTR | 30.0% | |
| TAATTTGATGAGCAGTTTCT+GGG | - | chr3_1:52896519-52896538 | None:intergenic | 30.0% | |
| GAATCAAAATTCACTAGTCA+TGG | - | chr3_1:52896893-52896912 | None:intergenic | 30.0% | |
| !! | TGTACGTGTCGATTATTAAA+AGG | + | chr3_1:52896983-52897002 | Msa0362060:intron | 30.0% |
| TTTAATATTTGCAAGAGTGG+TGG | - | chr3_1:52897244-52897263 | None:intergenic | 30.0% | |
| !! | CTTTTCTTTTTGAAGAGTGT+CGG | + | chr3_1:52897447-52897466 | Msa0362060:intron | 30.0% |
| CACATATCACAGCTTATTAT+TGG | - | chr3_1:52897485-52897504 | None:intergenic | 30.0% | |
| ATAATAAGCTGTGATATGTG+TGG | + | chr3_1:52897485-52897504 | Msa0362060:intron | 30.0% | |
| TGGAAACAACAAGTTATTCA+AGG | - | chr3_1:52897543-52897562 | None:intergenic | 30.0% | |
| GTGAATATGAATGTTACTCA+TGG | - | chr3_1:52897563-52897582 | None:intergenic | 30.0% | |
| TATTCACTCTTGAGAAGAAA+CGG | + | chr3_1:52897740-52897759 | Msa0362060:intron | 30.0% | |
| ! | CTGAAGAAGTATATTAAAGG+GGG | - | chr3_1:52897773-52897792 | None:intergenic | 30.0% |
| !!! | CTGTTTTAATTTTAACTGGG+TGG | + | chr3_1:52897829-52897848 | Msa0362060:intron | 30.0% |
| !!! | ATTTTAACTGGGTGGTAATT+TGG | + | chr3_1:52897837-52897856 | Msa0362060:intron | 30.0% |
| !!! | AATTTGGTTTTGCAGATTCA+TGG | + | chr3_1:52897853-52897872 | Msa0362060:intron | 30.0% |
| GATCTTGCTGGATATATATA+TGG | + | chr3_1:52898071-52898090 | Msa0362060:CDS | 30.0% | |
| ! | AAAAGGCATATTCTATCACA+TGG | + | chr3_1:52898192-52898211 | Msa0362060:CDS | 30.0% |
| ! | AAAGGCATATTCTATCACAT+GGG | + | chr3_1:52898193-52898212 | Msa0362060:CDS | 30.0% |
| !!! | AGTTTGGATTAGTTTTTGTC+GGG | - | chr3_1:52898358-52898377 | None:intergenic | 30.0% |
| TGCTATGACAATGTATACAA+AGG | - | chr3_1:52898727-52898746 | None:intergenic | 30.0% | |
| TGTATACATTGTCATAGCAT+TGG | + | chr3_1:52898728-52898747 | Msa0362060:CDS | 30.0% | |
| ! | CAATTGGTTTAAAGAACTGA+TGG | - | chr3_1:52898834-52898853 | None:intergenic | 30.0% |
| !! | AGTGGATTATTATGGACAAT+TGG | - | chr3_1:52898850-52898869 | None:intergenic | 30.0% |
| CTGAGTAAACTTTAGATAAG+TGG | - | chr3_1:52898868-52898887 | None:intergenic | 30.0% | |
| AGTTTACTCAGTTATACACT+AGG | + | chr3_1:52898877-52898896 | Msa0362060:intron | 30.0% | |
| TTACTCAATTTGTGTTTACC+TGG | + | chr3_1:52899508-52899527 | Msa0362060:intron | 30.0% | |
| GAAATAGAACACAGGTTATT+AGG | - | chr3_1:52899534-52899553 | None:intergenic | 30.0% | |
| GTATCCAAATACTCATACAT+CGG | - | chr3_1:52899575-52899594 | None:intergenic | 30.0% | |
| GAGTATTTGGATACTAGATA+CGG | + | chr3_1:52899581-52899600 | Msa0362060:CDS | 30.0% | |
| AGTATTTGGATACTAGATAC+GGG | + | chr3_1:52899582-52899601 | Msa0362060:CDS | 30.0% | |
| ! | AAGAACTTGTCATTTAGAGT+CGG | + | chr3_1:52899629-52899648 | Msa0362060:CDS | 30.0% |
| TTGCAAGAATAAATGTAAGC+GGG | - | chr3_1:52899751-52899770 | None:intergenic | 30.0% | |
| AAACTATCAAGTGTACAGAA+GGG | + | chr3_1:52899800-52899819 | Msa0362060:CDS | 30.0% | |
| AAATGCTTTCATTGTTGGAT+AGG | + | chr3_1:52900001-52900020 | Msa0362060:three_prime_UTR | 30.0% | |
| ! | AGTTCTAACATCAAATACAC+AGG | + | chr3_1:52900092-52900111 | Msa0362060:intron | 30.0% |
| GGATATCGATACGATATCAT+TGG | + | chr3_1:52896249-52896268 | Msa0362060:five_prime_UTR | 35.0% | |
| ! | ATCATTGGTTGTTACGTTGA+AGG | + | chr3_1:52896264-52896283 | Msa0362060:five_prime_UTR | 35.0% |
| ! | TCATTGGTTGTTACGTTGAA+GGG | + | chr3_1:52896265-52896284 | Msa0362060:five_prime_UTR | 35.0% |
| ! | TGTTGATAAGAATCAACCAG+CGG | - | chr3_1:52896341-52896360 | None:intergenic | 35.0% |
| ACTTCAGAACAGAATATTGG+TGG | + | chr3_1:52896361-52896380 | Msa0362060:five_prime_UTR | 35.0% | |
| CCATCATCATGAATCTTGTT+AGG | - | chr3_1:52896487-52896506 | None:intergenic | 35.0% | |
| CCTAACAAGATTCATGATGA+TGG | + | chr3_1:52896484-52896503 | Msa0362060:CDS | 35.0% | |
| CTAATTTGATGAGCAGTTTC+TGG | - | chr3_1:52896520-52896539 | None:intergenic | 35.0% | |
| TTATGGTGTGAGATACAAAC+CGG | - | chr3_1:52896545-52896564 | None:intergenic | 35.0% | |
| !! | GTGATTAATTTGCCCTTGTT+TGG | - | chr3_1:52896799-52896818 | None:intergenic | 35.0% |
| AGAAAACTCATATTAGTGCC+AGG | - | chr3_1:52897711-52897730 | None:intergenic | 35.0% | |
| ATTGCTATGCTCCATGAATA+TGG | + | chr3_1:52898023-52898042 | Msa0362060:CDS | 35.0% | |
| ATTAGATACAGAGATCTTGC+TGG | + | chr3_1:52898059-52898078 | Msa0362060:CDS | 35.0% | |
| GTCCTCCGATTAAAATATGA+TGG | + | chr3_1:52898412-52898431 | Msa0362060:intron | 35.0% | |
| !!! | GTCCATCATATTTTAATCGG+AGG | - | chr3_1:52898417-52898436 | None:intergenic | 35.0% |
| !!! | GGTCCTTTAAAATTTTCTCG+CGG | - | chr3_1:52898477-52898496 | None:intergenic | 35.0% |
| !!! | GTAGTGACTTTTTTTGACAC+CGG | + | chr3_1:52898534-52898553 | Msa0362060:intron | 35.0% |
| TGAAAGATGAGGAATGCAAA+TGG | - | chr3_1:52898667-52898686 | None:intergenic | 35.0% | |
| TGGTTTAAAGAACTGATGGT+AGG | - | chr3_1:52898830-52898849 | None:intergenic | 35.0% | |
| !!! | ATTTTAGTTACACCGTGTTC+TGG | - | chr3_1:52899066-52899085 | None:intergenic | 35.0% |
| TTCATCATGTTCTTGACAAC+TGG | - | chr3_1:52899266-52899285 | None:intergenic | 35.0% | |
| AATGGTAAACTGAAACCACA+GGG | - | chr3_1:52899291-52899310 | None:intergenic | 35.0% | |
| TTGAAGGAAGGCTGTAATAT+TGG | - | chr3_1:52899426-52899445 | None:intergenic | 35.0% | |
| GTAATGCAATGACTGATTGA+AGG | - | chr3_1:52899442-52899461 | None:intergenic | 35.0% | |
| ATCTGTCAGAAATAGAACAC+AGG | - | chr3_1:52899542-52899561 | None:intergenic | 35.0% | |
| AAGTCCGATGTATGAGTATT+TGG | + | chr3_1:52899568-52899587 | Msa0362060:CDS | 35.0% | |
| TGCAAACCATATGTACTACA+AGG | + | chr3_1:52899766-52899785 | Msa0362060:CDS | 35.0% | |
| TCTTTGCCTTGTAGTACATA+TGG | - | chr3_1:52899775-52899794 | None:intergenic | 35.0% | |
| CAAACTATCAAGTGTACAGA+AGG | + | chr3_1:52899799-52899818 | Msa0362060:CDS | 35.0% | |
| GAGGCTAAAGAAAACAATGT+TGG | - | chr3_1:52899837-52899856 | None:intergenic | 35.0% | |
| TCTGTTGAAAAGACAACTCT+TGG | + | chr3_1:52900054-52900073 | Msa0362060:three_prime_UTR | 35.0% | |
| AATGCACCATATAGTGTATG+AGG | + | chr3_1:52900139-52900158 | Msa0362060:three_prime_UTR | 35.0% | |
| ATGCACCATATAGTGTATGA+GGG | + | chr3_1:52900140-52900159 | Msa0362060:three_prime_UTR | 35.0% | |
| TGTAACCCTCATACACTATA+TGG | - | chr3_1:52900148-52900167 | None:intergenic | 35.0% | |
| ! | TTACCCATTGTTGTTACCGT+AGG | - | chr3_1:52896451-52896470 | None:intergenic | 40.0% |
| ACGGTAACAACAATGGGTAA+AGG | + | chr3_1:52896451-52896470 | Msa0362060:exon | 40.0% | |
| ACAACAATGGGTAAAGGAAG+AGG | + | chr3_1:52896457-52896476 | Msa0362060:exon | 40.0% | |
| ACTGCTCATCAAATTAGCAC+CGG | + | chr3_1:52896523-52896542 | Msa0362060:CDS | 40.0% | |
| ATCTCGGACTCCATAAACAT+GGG | - | chr3_1:52896661-52896680 | None:intergenic | 40.0% | |
| AATCTCGGACTCCATAAACA+TGG | - | chr3_1:52896662-52896681 | None:intergenic | 40.0% | |
| TTCAGCAAGAACACGAATCT+CGG | - | chr3_1:52896677-52896696 | None:intergenic | 40.0% | |
| ATTAGTGCCAGGAAGTCAAA+GGG | - | chr3_1:52897700-52897719 | None:intergenic | 40.0% | |
| TATTAGTGCCAGGAAGTCAA+AGG | - | chr3_1:52897701-52897720 | None:intergenic | 40.0% | |
| TGCAGATTCATGGTTTCAAG+TGG | + | chr3_1:52897863-52897882 | Msa0362060:intron | 40.0% | |
| ! | GCAGATTCATGGTTTCAAGT+GGG | + | chr3_1:52897864-52897883 | Msa0362060:intron | 40.0% |
| CTTATGTGCTTGGATACTCA+GGG | + | chr3_1:52897916-52897935 | Msa0362060:CDS | 40.0% | |
| CATTATGGTTCCTCTTGGTT+GGG | + | chr3_1:52897941-52897960 | Msa0362060:CDS | 40.0% | |
| ATTAGCATAGAGCGAAATCG+CGG | - | chr3_1:52897997-52898016 | None:intergenic | 40.0% | |
| CTATGCTCCATGAATATGGA+GGG | + | chr3_1:52898027-52898046 | Msa0362060:CDS | 40.0% | |
| !! | ACTGGTTACATCATTTTGGC+TGG | + | chr3_1:52898248-52898267 | Msa0362060:CDS | 40.0% |
| TTTGTCGGGACTAAATTGAG+TGG | - | chr3_1:52898344-52898363 | None:intergenic | 40.0% | |
| ! | GGACCGCGAGAAAATTTTAA+AGG | + | chr3_1:52898471-52898490 | Msa0362060:intron | 40.0% |
| TATACCGTGTTTCGAGATGA+TGG | + | chr3_1:52898585-52898604 | Msa0362060:CDS | 40.0% | |
| ATTCCTCATCTTTCAGCTCT+TGG | + | chr3_1:52898672-52898691 | Msa0362060:CDS | 40.0% | |
| ATCTTTCAGCTCTTGGAGTT+TGG | + | chr3_1:52898679-52898698 | Msa0362060:CDS | 40.0% | |
| !! | TTGGTGCTGTCGATTAAAGA+TGG | + | chr3_1:52898747-52898766 | Msa0362060:CDS | 40.0% |
| GATTACACTGTTCCAGAACA+CGG | + | chr3_1:52899051-52899070 | Msa0362060:CDS | 40.0% | |
| CTAGTGTTCGCATACAATAC+CGG | + | chr3_1:52899114-52899133 | Msa0362060:CDS | 40.0% | |
| AGAACATGATGAAATCCCTG+TGG | + | chr3_1:52899273-52899292 | Msa0362060:CDS | 40.0% | |
| CAATGGTAAACTGAAACCAC+AGG | - | chr3_1:52899292-52899311 | None:intergenic | 40.0% | |
| CTGTGGTTTCAGTTTACCAT+TGG | + | chr3_1:52899290-52899309 | Msa0362060:CDS | 40.0% | |
| GTACATTGGTACAAGTCCAA+TGG | - | chr3_1:52899309-52899328 | None:intergenic | 40.0% | |
| TGGACTTGTACCAATGTACA+TGG | + | chr3_1:52899310-52899329 | Msa0362060:CDS | 40.0% | |
| GCAAAGGTAACCATGTACAT+TGG | - | chr3_1:52899323-52899342 | None:intergenic | 40.0% | |
| ATGTACATGGTTACCTTTGC+AGG | + | chr3_1:52899323-52899342 | Msa0362060:CDS | 40.0% | |
| ! | TATTTGCTGAATAGCGTGCA+CGG | + | chr3_1:52899377-52899396 | Msa0362060:CDS | 40.0% |
| TGCAATGACTGATTGAAGGA+AGG | - | chr3_1:52899438-52899457 | None:intergenic | 40.0% | |
| ! | TCATTTAGAGTCGGAGTAAG+AGG | + | chr3_1:52899638-52899657 | Msa0362060:CDS | 40.0% |
| CTATGAATGTGTTAAAGGCC+AGG | - | chr3_1:52899670-52899689 | None:intergenic | 40.0% | |
| GGCCTTTAACACATTCATAG+CGG | + | chr3_1:52899670-52899689 | Msa0362060:CDS | 40.0% | |
| AGCCGCTATGAATGTGTTAA+AGG | - | chr3_1:52899675-52899694 | None:intergenic | 40.0% | |
| TATCAAGTGTACAGAAGGGA+GGG | + | chr3_1:52899804-52899823 | Msa0362060:CDS | 40.0% | |
| TGTATGAGGGTTACACTATC+AGG | + | chr3_1:52900153-52900172 | Msa0362060:three_prime_UTR | 40.0% | |
| GTTACACTATCAGGTTCAGT+TGG | + | chr3_1:52900162-52900181 | Msa0362060:three_prime_UTR | 40.0% | |
| ! | TTTGAGATCTCTCATACCGC+TGG | + | chr3_1:52896322-52896341 | Msa0362060:five_prime_UTR | 45.0% |
| ACAACAATTGCCACCACCTA+CGG | + | chr3_1:52896432-52896451 | Msa0362060:five_prime_UTR | 45.0% | |
| ! | ATTGTTGTTACCGTAGGTGG+TGG | - | chr3_1:52896445-52896464 | None:intergenic | 45.0% |
| ACCACCTACGGTAACAACAA+TGG | + | chr3_1:52896444-52896463 | Msa0362060:exon | 45.0% | |
| CCACCTACGGTAACAACAAT+GGG | + | chr3_1:52896445-52896464 | Msa0362060:exon | 45.0% | |
| GAAAGAACATGACGCACATG+CGG | + | chr3_1:52896725-52896744 | Msa0362060:intron | 45.0% | |
| !! | TTGCAAGAGTGGTGGATTGA+CGG | - | chr3_1:52897236-52897255 | None:intergenic | 45.0% |
| TTAGTGCCAGGAAGTCAAAG+GGG | - | chr3_1:52897699-52897718 | None:intergenic | 45.0% | |
| GTCAACAGTGCTTATGTGCT+TGG | + | chr3_1:52897906-52897925 | Msa0362060:CDS | 45.0% | |
| GCTTATGTGCTTGGATACTC+AGG | + | chr3_1:52897915-52897934 | Msa0362060:CDS | 45.0% | |
| TGGATACTCAGGGACCATTA+TGG | + | chr3_1:52897926-52897945 | Msa0362060:CDS | 45.0% | |
| CCAACCAAGAGGAACCATAA+TGG | - | chr3_1:52897943-52897962 | None:intergenic | 45.0% | |
| CCATTATGGTTCCTCTTGGT+TGG | + | chr3_1:52897940-52897959 | Msa0362060:CDS | 45.0% | |
| GCTATGCTCCATGAATATGG+AGG | + | chr3_1:52898026-52898045 | Msa0362060:CDS | 45.0% | |
| GTCTTGTCCCTCCATATTCA+TGG | - | chr3_1:52898037-52898056 | None:intergenic | 45.0% | |
| CACCACAGTGAACGTAAAAC+CGG | - | chr3_1:52898556-52898575 | None:intergenic | 45.0% | |
| ! | TTTTACGTTCACTGTGGTGC+AGG | + | chr3_1:52898557-52898576 | Msa0362060:intron | 45.0% |
| CACACCATCATCTCGAAACA+CGG | - | chr3_1:52898592-52898611 | None:intergenic | 45.0% | |
| CCAGCTATAGCAATGCAGTA+CGG | - | chr3_1:52898624-52898643 | None:intergenic | 45.0% | |
| ACTCCAAGAGCTGAAAGATG+AGG | - | chr3_1:52898678-52898697 | None:intergenic | 45.0% | |
| TTCAGCTCTTGGAGTTTGGT+TGG | + | chr3_1:52898683-52898702 | Msa0362060:CDS | 45.0% | |
| TCAGCTCTTGGAGTTTGGTT+GGG | + | chr3_1:52898684-52898703 | Msa0362060:CDS | 45.0% | |
| CTAACCAACAATGCATTGCC+AGG | + | chr3_1:52899009-52899028 | Msa0362060:intron | 45.0% | |
| CATTCCTGGCAATGCATTGT+TGG | - | chr3_1:52899016-52899035 | None:intergenic | 45.0% | |
| GTCTATCTGACCTGTATCTC+AGG | - | chr3_1:52899147-52899166 | None:intergenic | 45.0% | |
| GACAACTGGCTGCTTAATTG+TGG | - | chr3_1:52899252-52899271 | None:intergenic | 45.0% | |
| TGGTTACCTTTGCAGGATAC+TGG | + | chr3_1:52899330-52899349 | Msa0362060:CDS | 45.0% | |
| GGTTACCTTTGCAGGATACT+GGG | + | chr3_1:52899331-52899350 | Msa0362060:CDS | 45.0% | |
| ATAAGCCCAGTATCCTGCAA+AGG | - | chr3_1:52899339-52899358 | None:intergenic | 45.0% | |
| TTTGCAGGATACTGGGCTTA+TGG | + | chr3_1:52899338-52899357 | Msa0362060:CDS | 45.0% | |
| GTGCACGCTATTCAGCAAAT+AGG | - | chr3_1:52899378-52899397 | None:intergenic | 45.0% | |
| AGAACACAGGTTATTAGGCC+AGG | - | chr3_1:52899529-52899548 | None:intergenic | 45.0% | |
| GATACTAGATACGGGATCAG+TGG | + | chr3_1:52899590-52899609 | Msa0362060:CDS | 45.0% | |
| GATCAGTGGAGAAGCAATGA+AGG | + | chr3_1:52899604-52899623 | Msa0362060:CDS | 45.0% | |
| ! | TTTAGAGTCGGAGTAAGAGG+TGG | + | chr3_1:52899641-52899660 | Msa0362060:CDS | 45.0% |
| CTCTCGAAATCTCCAAGGAA+TGG | - | chr3_1:52899704-52899723 | None:intergenic | 45.0% | |
| TGAGACTCTCGAAATCTCCA+AGG | - | chr3_1:52899709-52899728 | None:intergenic | 45.0% | |
| CTATCAAGTGTACAGAAGGG+AGG | + | chr3_1:52899803-52899822 | Msa0362060:CDS | 45.0% | |
| CAGTTGCTGCAATAGACATG+AGG | - | chr3_1:52899856-52899875 | None:intergenic | 45.0% | |
| GTCTATTGCAGCAACTGTTG+CGG | + | chr3_1:52899859-52899878 | Msa0362060:CDS | 45.0% | |
| !! | ATACTATAAAATTATTTAAA+AGG | - | chr3_1:52896579-52896598 | None:intergenic | 5.0% |
| !!! | TTTTATATTTAATTTTGAAA+GGG | + | chr3_1:52896609-52896628 | Msa0362060:intron | 5.0% |
| ! | CCCATTGTTGTTACCGTAGG+TGG | - | chr3_1:52896448-52896467 | None:intergenic | 50.0% |
| TAGTGCCAGGAAGTCAAAGG+GGG | - | chr3_1:52897698-52897717 | None:intergenic | 50.0% | |
| !! | CACTGTTGACTCCAGTAGTG+AGG | - | chr3_1:52897896-52897915 | None:intergenic | 50.0% |
| GGGACCATTATGGTTCCTCT+TGG | + | chr3_1:52897936-52897955 | Msa0362060:CDS | 50.0% | |
| ATGGTTCCTCTTGGTTGGGT+AGG | + | chr3_1:52897945-52897964 | Msa0362060:CDS | 50.0% | |
| TGGTTCCTCTTGGTTGGGTA+GGG | + | chr3_1:52897946-52897965 | Msa0362060:CDS | 50.0% | |
| !!! | CACCGGTTTTACGTTCACTG+TGG | + | chr3_1:52898551-52898570 | Msa0362060:intron | 50.0% |
| CCGTACTGCATTGCTATAGC+TGG | + | chr3_1:52898621-52898640 | Msa0362060:CDS | 50.0% | |
| CGAGCAGGTGAATTCATTCC+TGG | - | chr3_1:52899030-52899049 | None:intergenic | 50.0% | |
| GGAACAGTGTAATCTCGAGC+AGG | - | chr3_1:52899045-52899064 | None:intergenic | 50.0% | |
| ! | CTGTATCTCAGGAAGCATGC+CGG | - | chr3_1:52899136-52899155 | None:intergenic | 50.0% |
| TCCAGCTTGGGTGAAAGCTT+TGG | + | chr3_1:52899400-52899419 | Msa0362060:CDS | 50.0% | |
| GGAGATTTCGAGAGTCTCAC+AGG | + | chr3_1:52899710-52899729 | Msa0362060:CDS | 50.0% | |
| AGTGCCAGGAAGTCAAAGGG+GGG | - | chr3_1:52897697-52897716 | None:intergenic | 55.0% | |
| GTGGGATGTGTCCTCACTAC+TGG | + | chr3_1:52897882-52897901 | Msa0362060:CDS | 55.0% | |
| GGTTCCTCTTGGTTGGGTAG+GGG | + | chr3_1:52897947-52897966 | Msa0362060:CDS | 55.0% | |
| GTTCCTCTTGGTTGGGTAGG+GGG | + | chr3_1:52897948-52897967 | Msa0362060:CDS | 55.0% | |
| CGGCATGCTTCCTGAGATAC+AGG | + | chr3_1:52899134-52899153 | Msa0362060:CDS | 55.0% | |
| GCCAAAGCTTTCACCCAAGC+TGG | - | chr3_1:52899404-52899423 | None:intergenic | 55.0% | |
| CGGAGTAAGAGGTGGTTACC+TGG | + | chr3_1:52899649-52899668 | Msa0362060:CDS | 55.0% | |
| TGTACAGAAGGGAGGGCTCT+GGG | + | chr3_1:52899811-52899830 | Msa0362060:CDS | 55.0% | |
| CAGCAACTGTTGCGGCAGTA+CGG | + | chr3_1:52899867-52899886 | Msa0362060:CDS | 55.0% | |
| ! | CACACCCCCCTTTGACTTCC+TGG | + | chr3_1:52897690-52897709 | Msa0362060:intron | 60.0% |
| ACACCCCCTACCCAACCAAG+AGG | - | chr3_1:52897954-52897973 | None:intergenic | 60.0% | |
| ! | GGTTGGGTAGGGGGTGTAGT+TGG | + | chr3_1:52897957-52897976 | Msa0362060:CDS | 60.0% |
| ATAGCGTGCACGGTCCAGCT+TGG | + | chr3_1:52899387-52899406 | Msa0362060:CDS | 60.0% | |
| TAGCGTGCACGGTCCAGCTT+GGG | + | chr3_1:52899388-52899407 | Msa0362060:CDS | 60.0% | |
| GCGGCTCTTCTGCCATTCCT+TGG | + | chr3_1:52899689-52899708 | Msa0362060:CDS | 60.0% | |
| GTGTACAGAAGGGAGGGCTC+TGG | + | chr3_1:52899810-52899829 | Msa0362060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 52896230 | 52900221 | 52896230 | ID=Msa0362060;Name=Msa0362060 |
| chr3_1 | mRNA | 52896230 | 52900221 | 52896230 | ID=Msa0362060-mRNA-1;Parent=Msa0362060;Name=Msa0362060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=233|1|1|1|0.85|0.75|8|264|436 |
| chr3_1 | exon | 52896230 | 52896544 | 52896230 | ID=Msa0362060-mRNA-1:exon:9575;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52897868 | 52898092 | 52897868 | ID=Msa0362060-mRNA-1:exon:9576;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52898189 | 52898283 | 52898189 | ID=Msa0362060-mRNA-1:exon:9577;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52898579 | 52898768 | 52898579 | ID=Msa0362060-mRNA-1:exon:9578;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52899031 | 52899155 | 52899031 | ID=Msa0362060-mRNA-1:exon:9579;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52899248 | 52899463 | 52899248 | ID=Msa0362060-mRNA-1:exon:9580;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52899560 | 52900102 | 52899560 | ID=Msa0362060-mRNA-1:exon:9581;Parent=Msa0362060-mRNA-1 |
| chr3_1 | exon | 52900123 | 52900221 | 52900123 | ID=Msa0362060-mRNA-1:exon:9582;Parent=Msa0362060-mRNA-1 |
| chr3_1 | five_prime_UTR | 52896230 | 52896462 | 52896230 | ID=Msa0362060-mRNA-1:five_prime_utr;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52896463 | 52896544 | 52896463 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52897868 | 52898092 | 52897868 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52898189 | 52898283 | 52898189 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52898579 | 52898768 | 52898579 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52899031 | 52899155 | 52899031 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52899248 | 52899463 | 52899248 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | CDS | 52899560 | 52899937 | 52899560 | ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1 |
| chr3_1 | three_prime_UTR | 52899938 | 52900102 | 52899938 | ID=Msa0362060-mRNA-1:three_prime_utr;Parent=Msa0362060-mRNA-1 |
| chr3_1 | three_prime_UTR | 52900123 | 52900221 | 52900123 | ID=Msa0362060-mRNA-1:three_prime_utr;Parent=Msa0362060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
