AlfalfaGEDB | Msa0362060

M. sativa cultivar zhongmu-4 / Msa0362060

KEGG: -
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015193 GO:0015238 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015824 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362060	XP_003600838.1	97.018	436	13	0	1	436	1	436	0.0	858

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362060	sp\|P92961\|PROT1_ARATH	71.230	431	122	1	6	436	14	442	0.0	654

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362060	G7JAM5	97.018	436	13	0	1	436	1	436	0.0	858

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0362060	-0.856618	2.847597e-62	-8.615850e-47
Msa0002770	Msa0362060	-0.804674	1.928476e-49	-8.615850e-47
Msa0003560	Msa0362060	0.847092	1.439091e-59	-8.615850e-47
Msa0038020	Msa0362060	0.809680	1.679002e-50	-8.615850e-47
Msa0050730	Msa0362060	0.801794	7.610768e-49	-8.615850e-47
Msa0060970	Msa0362060	0.800989	1.112287e-48	-8.615850e-47
Msa0072170	Msa0362060	0.819036	1.433784e-52	-8.615850e-47
Msa0085720	Msa0362060	0.823123	1.640436e-53	-8.615850e-47
Msa0090030	Msa0362060	0.817842	2.673286e-52	-8.615850e-47
Msa0092380	Msa0362060	0.828729	7.647434e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362060	MtrunA17_Chr3g0112971	97.018	436	13	0	1	436	1	436	0.0	858
Msa0362060	MtrunA17_Chr5g0436281	77.546	383	86	0	54	436	1	383	0.0	626
Msa0362060	MtrunA17_Chr4g0058161	40.503	437	256	4	1	436	17	450	4.10e-113	339
Msa0362060	MtrunA17_Chr1g0184721	32.405	395	250	7	54	436	51	440	2.55e-51	179
Msa0362060	MtrunA17_Chr1g0198081	30.184	434	268	11	25	435	59	480	1.75e-45	164
Msa0362060	MtrunA17_Chr8g0387941	27.689	437	270	12	26	433	28	447	1.05e-43	159
Msa0362060	MtrunA17_Chr4g0027241	29.909	438	264	13	26	436	41	462	1.02e-41	153
Msa0362060	MtrunA17_Chr6g0459011	29.620	395	245	13	54	429	13	393	5.56e-26	108
Msa0362060	MtrunA17_Chr6g0458931	26.180	466	288	17	5	434	10	455	2.02e-25	107
Msa0362060	MtrunA17_Chr5g0422741	28.535	396	256	11	54	433	54	438	1.34e-24	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0362060	AT2G39890.2	71.230	431	122	1	6	436	14	442	0.0	654
Msa0362060	AT2G39890.1	71.230	431	122	1	6	436	14	442	0.0	654
Msa0362060	AT3G55740.1	71.734	421	119	0	16	436	19	439	0.0	645
Msa0362060	AT2G36590.1	68.519	432	132	1	9	436	5	436	0.0	623
Msa0362060	AT2G39890.3	71.018	383	111	0	54	436	1	383	0.0	583
Msa0362060	AT3G55740.2	70.757	383	112	0	54	436	1	383	0.0	576
Msa0362060	AT3G55740.3	70.757	383	112	0	54	436	1	383	0.0	576
Msa0362060	AT2G36590.2	68.254	315	96	1	9	319	5	319	4.39e-164	465
Msa0362060	AT1G08230.2	30.022	463	282	13	2	436	3	451	4.88e-45	162
Msa0362060	AT5G41800.1	27.169	438	275	12	26	435	27	448	6.80e-37	140

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Find 132 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCATATTCTATCACA+TGG	0.568216	3_1:+52898192	Msa0362060:CDS
AAACTATCAAGTGTACAGAA+GGG	0.684291	3_1:+52899800	Msa0362060:CDS
AAAGGCATATTCTATCACAT+GGG	0.685218	3_1:+52898193	Msa0362060:CDS
AAATACTGGTTACATCATTT+TGG	0.194408	3_1:+52898244	Msa0362060:CDS
AAATGCTTTCATTGTTGGAT+AGG	0.440493	3_1:+52900001	Msa0362060:three_prime_UTR
AAGAACTTGTCATTTAGAGT+CGG	0.561515	3_1:+52899629	Msa0362060:CDS
AAGTCCGATGTATGAGTATT+TGG	0.293374	3_1:+52899568	Msa0362060:CDS
AATGCACCATATAGTGTATG+AGG	0.456813	3_1:+52900139	Msa0362060:three_prime_UTR
AATGCTTATATATAGAAGAC+AGG	0.542308	3_1:+52896297	Msa0362060:five_prime_UTR
AATGGTAAACTGAAACCACA+GGG	0.745661	3_1:-52899288	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTTCAGAACAGAATAT+TGG	+	chr3_1:52896358-52896377	Msa0362060:five_prime_UTR	30.0%
TAATTTGATGAGCAGTTTCT+GGG	-	chr3_1:52896519-52896538	None:intergenic	30.0%
GAATCAAAATTCACTAGTCA+TGG	-	chr3_1:52896893-52896912	None:intergenic	30.0%
TTTAATATTTGCAAGAGTGG+TGG	-	chr3_1:52897244-52897263	None:intergenic	30.0%
CACATATCACAGCTTATTAT+TGG	-	chr3_1:52897485-52897504	None:intergenic	30.0%
ATAATAAGCTGTGATATGTG+TGG	+	chr3_1:52897485-52897504	Msa0362060:intron	30.0%
TGGAAACAACAAGTTATTCA+AGG	-	chr3_1:52897543-52897562	None:intergenic	30.0%
GTGAATATGAATGTTACTCA+TGG	-	chr3_1:52897563-52897582	None:intergenic	30.0%
TATTCACTCTTGAGAAGAAA+CGG	+	chr3_1:52897740-52897759	Msa0362060:intron	30.0%
GATCTTGCTGGATATATATA+TGG	+	chr3_1:52898071-52898090	Msa0362060:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	52896230	52900221	52896230	ID=Msa0362060;Name=Msa0362060
chr3_1	mRNA	52896230	52900221	52896230	ID=Msa0362060-mRNA-1;Parent=Msa0362060;Name=Msa0362060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=233\|1\|1\|1\|0.85\|0.75\|8\|264\|436
chr3_1	exon	52896230	52896544	52896230	ID=Msa0362060-mRNA-1:exon:9575;Parent=Msa0362060-mRNA-1
chr3_1	exon	52897868	52898092	52897868	ID=Msa0362060-mRNA-1:exon:9576;Parent=Msa0362060-mRNA-1
chr3_1	exon	52898189	52898283	52898189	ID=Msa0362060-mRNA-1:exon:9577;Parent=Msa0362060-mRNA-1
chr3_1	exon	52898579	52898768	52898579	ID=Msa0362060-mRNA-1:exon:9578;Parent=Msa0362060-mRNA-1
chr3_1	exon	52899031	52899155	52899031	ID=Msa0362060-mRNA-1:exon:9579;Parent=Msa0362060-mRNA-1
chr3_1	exon	52899248	52899463	52899248	ID=Msa0362060-mRNA-1:exon:9580;Parent=Msa0362060-mRNA-1
chr3_1	exon	52899560	52900102	52899560	ID=Msa0362060-mRNA-1:exon:9581;Parent=Msa0362060-mRNA-1
chr3_1	exon	52900123	52900221	52900123	ID=Msa0362060-mRNA-1:exon:9582;Parent=Msa0362060-mRNA-1
chr3_1	five_prime_UTR	52896230	52896462	52896230	ID=Msa0362060-mRNA-1:five_prime_utr;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52896463	52896544	52896463	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52897868	52898092	52897868	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52898189	52898283	52898189	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52898579	52898768	52898579	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52899031	52899155	52899031	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52899248	52899463	52899248	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	CDS	52899560	52899937	52899560	ID=Msa0362060-mRNA-1:cds;Parent=Msa0362060-mRNA-1
chr3_1	three_prime_UTR	52899938	52900102	52899938	ID=Msa0362060-mRNA-1:three_prime_utr;Parent=Msa0362060-mRNA-1
chr3_1	three_prime_UTR	52900123	52900221	52900123	ID=Msa0362060-mRNA-1:three_prime_utr;Parent=Msa0362060-mRNA-1

Gene Sequence

>Msa0362060

ATGGGTAAAGGAAGAGGTGATCCTAACAAGATTCATGATGATGGTGTTGAAATCCCAGAAACTGCTCATCAAATTAGCACCGATTCATGGTTTCAAGTGGGATGTGTCCTCACTACTGGAGTCAACAGTGCTTATGTGCTTGGATACTCAGGGACCATTATGGTTCCTCTTGGTTGGGTAGGGGGTGTAGTTGGTCTTGTTCTTGCTGCCGCGATTTCGCTCTATGCTAATGCTCTTATTGCTATGCTCCATGAATATGGAGGGACAAGACACATTAGATACAGAGATCTTGCTGGATATATATATGGTAAAAAGGCATATTCTATCACATGGGCTCTGCAGTATATCAATCTTTTCATGATAAATACTGGTTACATCATTTTGGCTGGTTCAGCTTTGAAAGCTGCTTATACCGTGTTTCGAGATGATGGTGTGCTGAAGCTTCCGTACTGCATTGCTATAGCTGGAATTGTGTGTGCAATGTTTGCCATTTGCATTCCTCATCTTTCAGCTCTTGGAGTTTGGTTGGGAGTTTCAACAGTCTTCACCTTTGTATACATTGTCATAGCATTGGTGCTGTCGATTAAAGATGGAATGAATTCACCTGCTCGAGATTACACTGTTCCAGAACACGGTGTAACTAAAATATTCACAACAATTGGGGCGTCTGCTAGTCTAGTGTTCGCATACAATACCGGCATGCTTCCTGAGATACAGGCCACAATTAAGCAGCCAGTTGTCAAGAACATGATGAAATCCCTGTGGTTTCAGTTTACCATTGGACTTGTACCAATGTACATGGTTACCTTTGCAGGATACTGGGCTTATGGAAATACGACAGAAACCTATTTGCTGAATAGCGTGCACGGTCCAGCTTGGGTGAAAGCTTTGGCCAATATTACAGCCTTCCTTCAATCAGTCATTGCATTACATATATTTGCAAGTCCGATGTATGAGTATTTGGATACTAGATACGGGATCAGTGGAGAAGCAATGAAGGTTAAGAACTTGTCATTTAGAGTCGGAGTAAGAGGTGGTTACCTGGCCTTTAACACATTCATAGCGGCTCTTCTGCCATTCCTTGGAGATTTCGAGAGTCTCACAGGAGCGATCAGCACGTTCCCGCTTACATTTATTCTTGCAAACCATATGTACTACAAGGCAAAGAAGAACAAACTATCAAGTGTACAGAAGGGAGGGCTCTGGGCCAACATTGTTTTCTTTAGCCTCATGTCTATTGCAGCAACTGTTGCGGCAGTACGGCTCATTTCTGTAGACTCAAAAACATACAGTCTATTTGCAGATATTTGA

Protein sequence

>Msa0362060

MGKGRGDPNKIHDDGVEIPETAHQISTDSWFQVGCVLTTGVNSAYVLGYSGTIMVPLGWVGGVVGLVLAAAISLYANALIAMLHEYGGTRHIRYRDLAGYIYGKKAYSITWALQYINLFMINTGYIILAGSALKAAYTVFRDDGVLKLPYCIAIAGIVCAMFAICIPHLSALGVWLGVSTVFTFVYIVIALVLSIKDGMNSPARDYTVPEHGVTKIFTTIGASASLVFAYNTGMLPEIQATIKQPVVKNMMKSLWFQFTIGLVPMYMVTFAGYWAYGNTTETYLLNSVHGPAWVKALANITAFLQSVIALHIFASPMYEYLDTRYGISGEAMKVKNLSFRVGVRGGYLAFNTFIAALLPFLGDFESLTGAISTFPLTFILANHMYYKAKKNKLSSVQKGGLWANIVFFSLMSIAATVAAVRLISVDSKTYSLFADI*