AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1442220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442220 MtrunA17_Chr2g0287451 90.435 230 0 1 1 230 1 208 2.57e-146 406
Msa1442220 MtrunA17_Chr7g0217561 30.435 207 112 6 11 193 18 216 4.13e-19 82.4
Msa1442220 MtrunA17_Chr6g0453281 32.961 179 98 6 32 192 60 234 2.00e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442220 AT3G06180.1 48.661 224 63 4 32 230 45 241 7.71e-52 168
Msa1442220 AT5G19025.1 45.679 243 84 6 8 210 21 255 1.97e-46 155
Msa1442220 AT5G19025.2 45.267 243 89 6 8 210 21 259 2.91e-46 154
Msa1442220 AT3G01170.1 33.168 202 119 6 3 192 15 212 7.19e-22 90.1
Msa1442220 AT5G15260.2 35.912 181 94 7 32 193 52 229 3.46e-20 85.9
Msa1442220 AT5G15260.1 35.912 181 94 7 32 193 52 229 3.46e-20 85.9
Msa1442220 AT3G06180.2 49.618 131 46 3 32 142 45 175 1.67e-18 80.9

Find 101 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGGTTACTCATTTAT+TGG 0.144693 tig0029815:-26545 Msa1442220:three_prime_UTR
ACGATGAACCACATGTTTAT+TGG 0.207227 tig0029815:+26407 None:intergenic
AGGAAAATGGCTCCTGTTAA+TGG 0.248247 tig0029815:-33637 Msa1442220:CDS
ACACCCAATGCAACTCTTAA+TGG 0.253723 tig0029815:-26632 Msa1442220:CDS
AACACCTGAATTCCACAATT+TGG 0.271939 tig0029815:+30790 None:intergenic
GTTGCTAAGCTTGAAGCTTC+TGG 0.282017 tig0029815:-33574 Msa1442220:CDS
TTCTCCATCGGTTTCGTCTT+CGG 0.286647 tig0029815:-33847 Msa1442220:CDS
GAGGTCGAGGGTGGCGGATG+GGG 0.291939 tig0029815:+34002 None:intergenic
ATTTGAAGATAGAGAGATTA+GGG 0.294551 tig0029815:-33744 Msa1442220:CDS
AAAAGAGCTTTCCCATTAAC+AGG 0.315760 tig0029815:+33625 None:intergenic
AGGAAGGGAGGAGGAGAGAG+AGG 0.319372 tig0029815:+33908 None:intergenic
ATTGCCAAATTGTGGAATTC+AGG 0.319612 tig0029815:-30794 Msa1442220:intron
TTCTGACGCTTTCCTTTCTT+AGG 0.324406 tig0029815:+33550 None:intergenic
AGATAGAGAGATTAGGGTTA+GGG 0.332443 tig0029815:-33738 Msa1442220:CDS
ATGATGAATGCGAGGATGTA+AGG 0.334695 tig0029815:+33871 None:intergenic
TCTTTCTTATAAAGATTGTT+TGG 0.337739 tig0029815:+26510 None:intergenic
TGGGGAGAGAGAAGGAAGGG+AGG 0.363640 tig0029815:+33896 None:intergenic
GAATTCCACAATTTGGCAAT+AGG 0.365705 tig0029815:+30797 None:intergenic
AAGATAGAGAGATTAGGGTT+AGG 0.375742 tig0029815:-33739 Msa1442220:CDS
GAGGTCTGAGTTAAGGAAAA+TGG 0.398152 tig0029815:-33650 Msa1442220:CDS
CATAAGTTTATAGACACTCT+TGG 0.398474 tig0029815:+26451 None:intergenic
GAGAGATTAGGGTTAGGGTT+TGG 0.401531 tig0029815:-33733 Msa1442220:CDS
AGAGAACGAGGAGGAGGATG+AGG 0.403514 tig0029815:+33980 None:intergenic
CGAGGAAGTGTGAGCGGAAA+GGG 0.417141 tig0029815:-33798 Msa1442220:CDS
GGAAAATGGCTCCTGTTAAT+GGG 0.417774 tig0029815:-33636 Msa1442220:CDS
TCCTCCATTAAGAGTTGCAT+TGG 0.418261 tig0029815:+26628 None:intergenic
GATGAGGAGGTCGAGGGTGG+CGG 0.419973 tig0029815:+33996 None:intergenic
GACCTCAAACACTCATAATC+AGG 0.422373 tig0029815:+33667 None:intergenic
GATTTGAAGATAGAGAGATT+AGG 0.426811 tig0029815:-33745 Msa1442220:CDS
TGTAGAGGATGTAGGAAGAG+AGG 0.435172 tig0029815:+33941 None:intergenic
GTTGAAGATGTAGAGGATGT+AGG 0.435475 tig0029815:+33933 None:intergenic
GTGAATATGAGAAACTTCCT+TGG 0.438620 tig0029815:-33711 Msa1442220:CDS
GGAGGAGGATGAGGAGGTCG+AGG 0.441658 tig0029815:+33989 None:intergenic
GTGAGCGGAAAGGGTGTAAA+GGG 0.452025 tig0029815:-33789 Msa1442220:CDS
GGAGAGAGAAGGAAGGGAGG+AGG 0.454349 tig0029815:+33899 None:intergenic
AGAGGGAGTTGAAGATGTAG+AGG 0.456028 tig0029815:+33926 None:intergenic
ATAAGTTTATAGACACTCTT+GGG 0.464511 tig0029815:+26452 None:intergenic
ATCCTGATTATGAGTGTTTG+AGG 0.464912 tig0029815:-33669 Msa1442220:CDS
GAGGATGAGGAGGTCGAGGG+TGG 0.469592 tig0029815:+33993 None:intergenic
AAAATAGGTGAAATAATTCA+AGG 0.469671 tig0029815:+26336 None:intergenic
AGGAGGTCGAGGGTGGCGGA+TGG 0.474368 tig0029815:+34000 None:intergenic
GTAAGGGATGGGGAGAGAGA+AGG 0.474797 tig0029815:+33888 None:intergenic
GGAAGGGAGGAGGAGAGAGA+GGG 0.479217 tig0029815:+33909 None:intergenic
GGAGGTCGAGGGTGGCGGAT+GGG 0.479340 tig0029815:+34001 None:intergenic
GAAGCTTCAAGCTTAGCAAC+AGG 0.479449 tig0029815:+33577 None:intergenic
AGTGTTTGAGGTCTGAGTTA+AGG 0.480456 tig0029815:-33657 Msa1442220:CDS
CCTCCATTAAGAGTTGCATT+GGG 0.488597 tig0029815:+26629 None:intergenic
GCATTCATCATCTTCTCCAT+CGG 0.493706 tig0029815:-33859 Msa1442220:CDS
CGTTACCTATTGCCAAATTG+TGG 0.498880 tig0029815:-30802 Msa1442220:CDS
CGGAGAAGAGAACGAGGAGG+AGG 0.502036 tig0029815:+33974 None:intergenic
TGTGAGCGGAAAGGGTGTAA+AGG 0.504435 tig0029815:-33790 Msa1442220:CDS
CTCCTCCTCGTTCTCTTCTC+CGG 0.508827 tig0029815:-33973 Msa1442220:CDS
AGAGGATGTAGGAAGAGAGG+AGG 0.509455 tig0029815:+33944 None:intergenic
CCTTGGAAAGGTGGGAGTGA+AGG 0.509828 tig0029815:-33694 Msa1442220:CDS
TAAATGAGTAACCATGAGAA+TGG 0.511091 tig0029815:+26549 None:intergenic
CTTGGAAAGGTGGGAGTGAA+GGG 0.516479 tig0029815:-33693 Msa1442220:CDS
AATGCGAGGATGTAAGGGAT+GGG 0.524206 tig0029815:+33877 None:intergenic
GAGAAACTTCCTTGGAAAGG+TGG 0.532025 tig0029815:-33703 Msa1442220:CDS
CCTTCACTCCCACCTTTCCA+AGG 0.533293 tig0029815:+33694 None:intergenic
GAGTGTCTATAAACTTATGA+AGG 0.534405 tig0029815:-26447 Msa1442220:three_prime_UTR
GAAGCTTCTGGTCCTAAGAA+AGG 0.534494 tig0029815:-33562 Msa1442220:CDS
TTAAACCATTGCCATTCTCA+TGG 0.536561 tig0029815:-26560 Msa1442220:three_prime_UTR
GGAAGAGAGGAGGAACGCGC+CGG 0.539333 tig0029815:+33954 None:intergenic
AGAGGAAGATGAAGATGAAG+AGG 0.540483 tig0029815:+34071 None:intergenic
GGATGGGGAGAGAGAAGGAA+GGG 0.553140 tig0029815:+33893 None:intergenic
TTTAACATAAACATGCAAGA+AGG 0.554886 tig0029815:-34117 None:intergenic
GAGGAGGATGAGGAGGTCGA+GGG 0.555296 tig0029815:+33990 None:intergenic
GGGATGGGGAGAGAGAAGGA+AGG 0.558143 tig0029815:+33892 None:intergenic
ATGCGAGGATGTAAGGGATG+GGG 0.563162 tig0029815:+33878 None:intergenic
GAGGAAGATGAAGATGAAGA+GGG 0.563876 tig0029815:+34072 None:intergenic
TATGTTGCGGTGCTCGATCG+AGG 0.567177 tig0029815:-33816 Msa1442220:CDS
TGGGCAGTTCAGATACAAGA+AGG 0.567771 tig0029815:+26471 None:intergenic
AGAAACTTCCTTGGAAAGGT+GGG 0.577982 tig0029815:-33702 Msa1442220:CDS
TGCAGAGATTGTTGCAATGG+TGG 0.578137 tig0029815:+34037 None:intergenic
TCGAGGAAGTGTGAGCGGAA+AGG 0.582933 tig0029815:-33799 Msa1442220:CDS
AAATAGGTGAAATAATTCAA+GGG 0.583940 tig0029815:+26337 None:intergenic
TGATGAATGCGAGGATGTAA+GGG 0.585002 tig0029815:+33872 None:intergenic
AGTTGCAGAGATTGTTGCAA+TGG 0.585063 tig0029815:+34034 None:intergenic
GAATGCGAGGATGTAAGGGA+TGG 0.586112 tig0029815:+33876 None:intergenic
TATGAGAAACTTCCTTGGAA+AGG 0.586994 tig0029815:-33706 Msa1442220:CDS
AGTAACCATGAGAATGGCAA+TGG 0.596922 tig0029815:+26555 None:intergenic
AATGCAACTCTTAATGGAGG+AGG 0.599567 tig0029815:-26626 Msa1442220:CDS
TAGGTAACGAACAACCTCAC+AGG 0.606176 tig0029815:+30816 None:intergenic
GAACGAGGAGGAGGATGAGG+AGG 0.608762 tig0029815:+33983 None:intergenic
ACGCGCCGGAGAAGAGAACG+AGG 0.608896 tig0029815:+33968 None:intergenic
AGAAAGGAAAGCGTCAGAAG+AGG 0.610714 tig0029815:-33546 Msa1442220:intron
TCGTTGATCCACCACTGCGT+AGG 0.634415 tig0029815:-26597 Msa1442220:exon
CTCGATCGAGGAAGTGTGAG+CGG 0.637391 tig0029815:-33804 Msa1442220:CDS
GTGACATGCCTACGCAGTGG+TGG 0.642411 tig0029815:+26589 None:intergenic
CGCCGGAGAAGAGAACGAGG+AGG 0.649974 tig0029815:+33971 None:intergenic
AATAATTCAAGGGATAGAGT+CGG 0.651700 tig0029815:+26347 None:intergenic
AAAACCGAAGACGAAACCGA+TGG 0.658416 tig0029815:+33843 None:intergenic
CCCAATGCAACTCTTAATGG+AGG 0.663648 tig0029815:-26629 Msa1442220:CDS
ATGGTGGCGTAATGATGAAG+AGG 0.679254 tig0029815:+34053 None:intergenic
TAAAGGGTTGAAGAAAGCGA+CGG 0.685657 tig0029815:-33773 Msa1442220:CDS
TGGAGAAGATGATGAATGCG+AGG 0.698786 tig0029815:+33863 None:intergenic
AGTTGACTCCAATAAACATG+TGG 0.699128 tig0029815:-26415 Msa1442220:three_prime_UTR
TTAGCAACAGGACAACCACA+AGG 0.706608 tig0029815:+33589 None:intergenic
AGATGAAGAGGGCATTGCTG+TGG 0.719826 tig0029815:+34083 None:intergenic
AGAATCTTAAGAAACCTGTG+AGG 0.769049 tig0029815:-30830 Msa1442220:CDS
TATGTGACATGCCTACGCAG+TGG 0.803741 tig0029815:+26586 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAACAAAAATTACATA+TGG - tig0029815:31456-31475 Msa1442220:intron 10.0%
!! TAAAAACAAAAATTACATAT+GGG - tig0029815:31457-31476 Msa1442220:intron 10.0%
!!! ATCAAAATCTACTTATTTTT+TGG - tig0029815:27491-27510 Msa1442220:intron 15.0%
!!! TCAAAATCTACTTATTTTTT+GGG - tig0029815:27492-27511 Msa1442220:intron 15.0%
!! CAATAATAAATAGTTGTTAA+AGG + tig0029815:27630-27649 None:intergenic 15.0%
!! CTTTAACAACTATTTATTAT+TGG - tig0029815:27628-27647 Msa1442220:intron 15.0%
!! CAATAATAAATAGTTGTTAA+AGG + tig0029815:27630-27649 None:intergenic 15.0%
!! CTTTAACAACTATTTATTAT+TGG - tig0029815:27628-27647 Msa1442220:intron 15.0%
!!! TACAATTTATCAATTTTTTG+TGG - tig0029815:29544-29563 Msa1442220:intron 15.0%
!!! TTTAAAATCATTAACAACAT+CGG + tig0029815:32037-32056 None:intergenic 15.0%
!! AAAATTTGGAAAACAATTAA+TGG + tig0029815:32218-32237 None:intergenic 15.0%
!!! ATTAATTGTTTTCCAAATTT+TGG - tig0029815:32217-32236 Msa1442220:intron 15.0%
!! AAATAAATACTCAATTCATA+AGG + tig0029815:32298-32317 None:intergenic 15.0%
!!! AGTATTTATTTTTCAATGTT+TGG - tig0029815:32307-32326 Msa1442220:intron 15.0%
!!! TGTTTACAAATTTTTATAAC+TGG + tig0029815:32644-32663 None:intergenic 15.0%
!! TTGATTCAATTTGTCTAATT+TGG - tig0029815:26957-26976 Msa1442220:intron 20.0%
!! TGATTCAATTTGTCTAATTT+GGG - tig0029815:26958-26977 Msa1442220:intron 20.0%
!!! GATTTTGATTTTTTGTTTTG+TGG - tig0029815:27004-27023 Msa1442220:intron 20.0%
!!! GTTTGTTTAATTGTTTTGAT+TGG - tig0029815:27058-27077 Msa1442220:intron 20.0%
!!! ATCAAAATCTGCTTATTTTT+TGG - tig0029815:28017-28036 Msa1442220:intron 20.0%
!!! TCAAAATCTGCTTATTTTTT+GGG - tig0029815:28018-28037 Msa1442220:intron 20.0%
!! AAAAGTTAAAAGATAAGTGA+GGG + tig0029815:29011-29030 None:intergenic 20.0%
!! TAAAAGTTAAAAGATAAGTG+AGG + tig0029815:29012-29031 None:intergenic 20.0%
!!! TGCCAAAATTTATGTTATTT+GGG - tig0029815:29036-29055 Msa1442220:intron 20.0%
!! ACAGATATAATTCAGTAAAA+AGG + tig0029815:29587-29606 None:intergenic 20.0%
!!! GACCTTTTAAAATTTTGAAT+GGG - tig0029815:29733-29752 Msa1442220:intron 20.0%
!!! ACCTTTTAAAATTTTGAATG+GGG - tig0029815:29734-29753 Msa1442220:intron 20.0%
!!! AATTTGATTTTCCATTTCTA+TGG + tig0029815:30125-30144 None:intergenic 20.0%
!! AATCATAAATGTATGAGATT+AGG - tig0029815:30753-30772 Msa1442220:intron 20.0%
!! ATCATAAATGTATGAGATTA+GGG - tig0029815:30754-30773 Msa1442220:intron 20.0%
!!! TTTTGCTATAATCTTCTTTT+TGG + tig0029815:30891-30910 None:intergenic 20.0%
!! TCAATAAATAGCTAATTGTT+GGG + tig0029815:31287-31306 None:intergenic 20.0%
!! ATCAATAAATAGCTAATTGT+TGG + tig0029815:31288-31307 None:intergenic 20.0%
!! CAAGATTAACAATTTAACAT+TGG - tig0029815:31390-31409 Msa1442220:intron 20.0%
!!! CAATTTCTTATTTATGCTTT+AGG - tig0029815:32090-32109 Msa1442220:intron 20.0%
!! ATTTATACAACTCCAAAATT+TGG + tig0029815:32232-32251 None:intergenic 20.0%
!!! AATTTTGGAGTTGTATAAAT+CGG - tig0029815:32232-32251 Msa1442220:intron 20.0%
!!! TTATTTTTCAATGTTTGGTT+TGG - tig0029815:32312-32331 Msa1442220:intron 20.0%
!! TTTCTAATAATATAGAGAAG+AGG + tig0029815:33127-33146 None:intergenic 20.0%
!!! TTGAATTTTTTCTGATATTG+TGG - tig0029815:33642-33661 Msa1442220:CDS 20.0%
!!! CATGCATTTTAAGTAAAAAA+AGG - tig0029815:33668-33687 Msa1442220:CDS 20.0%
!! CTTCAATAAATTTGAATTAG+TGG + tig0029815:33733-33752 None:intergenic 20.0%
!! TCTTTCTTATAAAGATTGTT+TGG + tig0029815:33940-33959 None:intergenic 20.0%
! ATTTGAAGATAGAGAGATTA+GGG - tig0029815:26703-26722 Msa1442220:intron 25.0%
!!! TTTGATTTTTTGTTTTGTGG+TGG - tig0029815:27007-27026 Msa1442220:intron 25.0%
!!! ATTAGATTTTGAGGATGTTT+TGG - tig0029815:27086-27105 Msa1442220:intron 25.0%
!! ATCTGATTGTGTGAAATTTT+AGG - tig0029815:27130-27149 Msa1442220:intron 25.0%
!! TCTGATTGTGTGAAATTTTA+GGG - tig0029815:27131-27150 Msa1442220:intron 25.0%
!! ACTTTTATGAAAAGAAAGCT+TGG - tig0029815:27197-27216 Msa1442220:intron 25.0%
!!! TGGTAAAGGTTATTTTTGAT+CGG - tig0029815:27217-27236 Msa1442220:intron 25.0%
! AAAAACTAAAATGTGAGATC+TGG + tig0029815:27464-27483 None:intergenic 25.0%
! ATATTTCTTCGTTAAAATCG+TGG - tig0029815:28225-28244 Msa1442220:intron 25.0%
!! ATCAAAATCTGCTTATGTTT+TGG - tig0029815:28543-28562 Msa1442220:intron 25.0%
!! TCAAAATCTGCTTATGTTTT+GGG - tig0029815:28544-28563 Msa1442220:intron 25.0%
!! TTTTCTTTACCACAATTTCA+AGG + tig0029815:28715-28734 None:intergenic 25.0%
! TTACTTGTGATTCACATATA+CGG - tig0029815:28772-28791 Msa1442220:intron 25.0%
! CATTGAAATCACATCAATTT+CGG + tig0029815:28953-28972 None:intergenic 25.0%
!!! CAAATAACATAAATTTTGGC+AGG + tig0029815:29037-29056 None:intergenic 25.0%
! CTGCCAAAATTTATGTTATT+TGG - tig0029815:29035-29054 Msa1442220:intron 25.0%
!! AGCCCAAATAACATAAATTT+TGG + tig0029815:29041-29060 None:intergenic 25.0%
! GGTTAAAGATAAATTCACTT+TGG + tig0029815:29181-29200 None:intergenic 25.0%
! ATTTATCTTTAACCTGAGTA+CGG - tig0029815:29187-29206 Msa1442220:intron 25.0%
! TCATAAGGTTATATCTACAA+CGG + tig0029815:29267-29286 None:intergenic 25.0%
! AAAGACAATACAAATTCAGT+AGG - tig0029815:29395-29414 Msa1442220:intron 25.0%
! ATTGTAATATATCGTGAAGA+GGG + tig0029815:29530-29549 None:intergenic 25.0%
! AATTGTAATATATCGTGAAG+AGG + tig0029815:29531-29550 None:intergenic 25.0%
!!! GGACCTTTTAAAATTTTGAA+TGG - tig0029815:29732-29751 Msa1442220:intron 25.0%
!! TCCCCATTCAAAATTTTAAA+AGG + tig0029815:29738-29757 None:intergenic 25.0%
! TCAACGTTAGATTTATTGAA+CGG + tig0029815:29908-29927 None:intergenic 25.0%
!! TTAATCCAATTTTACGGAAA+CGG + tig0029815:30531-30550 None:intergenic 25.0%
!! GTCATCTTAATCCAATTTTA+CGG + tig0029815:30537-30556 None:intergenic 25.0%
! CTTAGGATAAATATTACATC+AGG + tig0029815:30559-30578 None:intergenic 25.0%
! CTATTACTACTAGATTTCTT+AGG + tig0029815:30576-30595 None:intergenic 25.0%
! TATATGCATACTATGATACT+AGG - tig0029815:30616-30635 Msa1442220:intron 25.0%
! GTTCAATGATAGTATGAATA+GGG + tig0029815:30781-30800 None:intergenic 25.0%
! AGTTCAATGATAGTATGAAT+AGG + tig0029815:30782-30801 None:intergenic 25.0%
! TATTCATACTATCATTGAAC+TGG - tig0029815:30781-30800 Msa1442220:intron 25.0%
! CCATTGATATCTTTGTTAAA+TGG + tig0029815:30921-30940 None:intergenic 25.0%
! CCATTTAACAAAGATATCAA+TGG - tig0029815:30918-30937 Msa1442220:intron 25.0%
!! TTGTTCAAAAGCAATTTTAG+AGG + tig0029815:30967-30986 None:intergenic 25.0%
! TAAATGCAATGAATAGATAC+TGG - tig0029815:31093-31112 Msa1442220:intron 25.0%
! AAAAGTGAACATTTCAAAGT+TGG + tig0029815:31121-31140 None:intergenic 25.0%
!!! CTTTTTTATATCCGAAATTG+TGG - tig0029815:31136-31155 Msa1442220:intron 25.0%
! CATTGGAAACTACATAAATA+AGG - tig0029815:31407-31426 Msa1442220:intron 25.0%
! TTCCAGTATATCTTAATCTA+AGG - tig0029815:31873-31892 Msa1442220:intron 25.0%
!! CATTTTCAAATCAAAGACTT+AGG + tig0029815:31971-31990 None:intergenic 25.0%
!!! TTATTTATGCTTTAGGATTG+TGG - tig0029815:32097-32116 Msa1442220:intron 25.0%
! GTTTCAACTTCCAAAATAAT+CGG - tig0029815:32513-32532 Msa1442220:intron 25.0%
! TTTCAACTTCCAAAATAATC+GGG - tig0029815:32514-32533 Msa1442220:intron 25.0%
! TGTTTAAATATAGACCTTGT+CGG + tig0029815:32563-32582 None:intergenic 25.0%
! TAGTCAAGTGTAAAAACAAT+AGG + tig0029815:32782-32801 None:intergenic 25.0%
! CTAACATTCATTCTCTTATT+GGG + tig0029815:33085-33104 None:intergenic 25.0%
! TCTAACATTCATTCTCTTAT+TGG + tig0029815:33086-33105 None:intergenic 25.0%
!!! GCTTAAAGGACTTATTTTTT+TGG - tig0029815:33169-33188 Msa1442220:intron 25.0%
!! GATTTAAAGTTATACACTGA+TGG + tig0029815:33413-33432 None:intergenic 25.0%
!!! TTATGTAATCTGTTTTGATC+TGG - tig0029815:33439-33458 Msa1442220:intron 25.0%
!! ATCATGACTTATTTGAGTTA+AGG - tig0029815:33483-33502 Msa1442220:intron 25.0%
! ATAAGTTTATAGACACTCTT+GGG + tig0029815:33998-34017 None:intergenic 25.0%
!! ACATTTTACAACAACTGAAA+TGG + tig0029815:34070-34089 None:intergenic 25.0%
GATTTGAAGATAGAGAGATT+AGG - tig0029815:26702-26721 Msa1442220:intron 30.0%
!! TTTTGTGGTGGAATTGAATT+GGG - tig0029815:27019-27038 Msa1442220:intron 30.0%
! TTGGTGTGAATTAGATTTTG+AGG - tig0029815:27077-27096 Msa1442220:intron 30.0%
ATGAAAAGAAAGCTTGGTAA+AGG - tig0029815:27203-27222 Msa1442220:intron 30.0%
!!! GGTAAAGGTTATTTTTGATC+GGG - tig0029815:27218-27237 Msa1442220:intron 30.0%
TTCAACACTAGAACACTATA+AGG + tig0029815:27668-27687 None:intergenic 30.0%
! ATATTTCTGCGTTAAAATCG+TGG - tig0029815:27699-27718 Msa1442220:intron 30.0%
AGCTAACAATAACACAAAAC+TGG + tig0029815:28117-28136 None:intergenic 30.0%
!! GTTTTGTGTTATTGTTAGCT+CGG - tig0029815:28117-28136 Msa1442220:intron 30.0%
! ATGTTGGCTAAGTACAAATT+CGG + tig0029815:28819-28838 None:intergenic 30.0%
CTAACCTAGTTATGAATGAA+AGG + tig0029815:28848-28867 None:intergenic 30.0%
AACTAGGTTAGTGATTTGAA+TGG - tig0029815:28857-28876 Msa1442220:intron 30.0%
GCGATTTATTTATGCCATAA+GGG - tig0029815:28879-28898 Msa1442220:intron 30.0%
CGATTTATTTATGCCATAAG+GGG - tig0029815:28880-28899 Msa1442220:intron 30.0%
CGAAATTGATGTGATTTCAA+TGG - tig0029815:28951-28970 Msa1442220:intron 30.0%
ATATTAACCCAGAAAGATCA+TGG + tig0029815:29222-29241 None:intergenic 30.0%
TGTTCTTAAAACAAAAAGGG+AGG + tig0029815:29324-29343 None:intergenic 30.0%
!!! TCCCTTTTTGTTTTAAGAAC+AGG - tig0029815:29323-29342 Msa1442220:intron 30.0%
CCCTGTTCTTAAAACAAAAA+GGG + tig0029815:29327-29346 None:intergenic 30.0%
!!! CCCTTTTTGTTTTAAGAACA+GGG - tig0029815:29324-29343 Msa1442220:intron 30.0%
ACCCTGTTCTTAAAACAAAA+AGG + tig0029815:29328-29347 None:intergenic 30.0%
GGTACAAAATCTACTAAAAG+AGG + tig0029815:29509-29528 None:intergenic 30.0%
CTGAATTATATCTGTAGTCT+TGG - tig0029815:29592-29611 Msa1442220:intron 30.0%
!! CAAAATTTTAAAAGGTCCCA+AGG + tig0029815:29730-29749 None:intergenic 30.0%
CAACGTTAGATTTATTGAAC+GGG + tig0029815:29907-29926 None:intergenic 30.0%
CCATTTCTATGGTTCTTTAA+TGG + tig0029815:30114-30133 None:intergenic 30.0%
CCATTAAAGAACCATAGAAA+TGG - tig0029815:30111-30130 Msa1442220:intron 30.0%
ATTGTATTCAGAGTTGAGAA+AGG - tig0029815:30379-30398 Msa1442220:intron 30.0%
TTGTATTCAGAGTTGAGAAA+GGG - tig0029815:30380-30399 Msa1442220:intron 30.0%
ACTAAAATTCTCCAAAGTCA+GGG - tig0029815:30477-30496 Msa1442220:intron 30.0%
TAGCATGACATTTGAGTATT+TGG - tig0029815:30593-30612 Msa1442220:intron 30.0%
AATTCAGTATATGACACAGA+AGG - tig0029815:30656-30675 Msa1442220:intron 30.0%
ATACTGAAGACAAATATGCA+AGG + tig0029815:31239-31258 None:intergenic 30.0%
TGTCTTCAGTATCTTCTTTA+TGG - tig0029815:31247-31266 Msa1442220:intron 30.0%
CTACATAAATAAGGAAACCA+AGG - tig0029815:31416-31435 Msa1442220:intron 30.0%
TCTCAATAGGTTTGATCATT+AGG + tig0029815:31520-31539 None:intergenic 30.0%
TCAACTCATAGAATCTCAAT+AGG + tig0029815:31533-31552 None:intergenic 30.0%
!! AGATCTATAAGAGTGTCAAT+AGG - tig0029815:31685-31704 Msa1442220:intron 30.0%
TATCTGCCTAGATCTAAATT+AGG - tig0029815:31772-31791 Msa1442220:intron 30.0%
!! TGATCTATAAGAGTGTCAAT+AGG - tig0029815:31826-31845 Msa1442220:intron 30.0%
TGCCTTAGATTAAGATATAC+TGG + tig0029815:31878-31897 None:intergenic 30.0%
TTCTTCATAGAGTACATCAT+TGG + tig0029815:32069-32088 None:intergenic 30.0%
ACTAATAAGCATGTGAGAAA+AGG + tig0029815:32128-32147 None:intergenic 30.0%
! AACATTGTCCTTTTCTTGTT+AGG - tig0029815:32380-32399 Msa1442220:intron 30.0%
CCATTTCTTTACTAAATAGC+CGG - tig0029815:32414-32433 Msa1442220:intron 30.0%
CATTTCTTTACTAAATAGCC+GGG - tig0029815:32415-32434 Msa1442220:intron 30.0%
! TCTGGAATACAAATAAAACC+CGG + tig0029815:32436-32455 None:intergenic 30.0%
! CTCTTTTTATCATGCATATC+TGG + tig0029815:32454-32473 None:intergenic 30.0%
CAGATATGCATGATAAAAAG+AGG - tig0029815:32452-32471 Msa1442220:intron 30.0%
AACTCTTTCATAGCAATCTT+TGG + tig0029815:32613-32632 None:intergenic 30.0%
GTAGTGCATAATTAGTAACT+TGG + tig0029815:32681-32700 None:intergenic 30.0%
TTATTGGGTGAAAACAATGT+GGG + tig0029815:33070-33089 None:intergenic 30.0%
ATCTTATTCGATTCATTCCT+AGG - tig0029815:33207-33226 Msa1442220:intron 30.0%
ATGTAAGGTACATTTGCAAA+AGG + tig0029815:33308-33327 None:intergenic 30.0%
!! AGGATGTTTATTTTCCACTT+TGG - tig0029815:33503-33522 Msa1442220:intron 30.0%
!! GGATGTTTATTTTCCACTTT+GGG - tig0029815:33504-33523 Msa1442220:intron 30.0%
!! GATGTTTATTTTCCACTTTG+GGG - tig0029815:33505-33524 Msa1442220:intron 30.0%
!! ATGTTTATTTTCCACTTTGG+GGG - tig0029815:33506-33525 Msa1442220:intron 30.0%
CTGAATGTCTAAAAGAAACT+GGG + tig0029815:33542-33561 None:intergenic 30.0%
TCTGAATGTCTAAAAGAAAC+TGG + tig0029815:33543-33562 None:intergenic 30.0%
! GTTTCTTTTAGACATTCAGA+AGG - tig0029815:33543-33562 Msa1442220:intron 30.0%
CTTGTGATAACAATGTCTAT+TGG + tig0029815:33618-33637 None:intergenic 30.0%
TAAATGAGTAACCATGAGAA+TGG + tig0029815:33901-33920 None:intergenic 30.0%
TCTCATGGTTACTCATTTAT+TGG - tig0029815:33902-33921 Msa1442220:CDS 30.0%
CATAAGTTTATAGACACTCT+TGG + tig0029815:33999-34018 None:intergenic 30.0%
GAGTGTCTATAAACTTATGA+AGG - tig0029815:34000-34019 Msa1442220:CDS 30.0%
AATAATTCAAGGGATAGAGT+CGG + tig0029815:34103-34122 None:intergenic 30.0%
!!! TTCGGTTTTGAGATATGTTG+CGG - tig0029815:26618-26637 Msa1442220:CDS 35.0%
AAGATAGAGAGATTAGGGTT+AGG - tig0029815:26708-26727 Msa1442220:intron 35.0%
AGATAGAGAGATTAGGGTTA+GGG - tig0029815:26709-26728 Msa1442220:intron 35.0%
GTGAATATGAGAAACTTCCT+TGG - tig0029815:26736-26755 Msa1442220:intron 35.0%
TATGAGAAACTTCCTTGGAA+AGG - tig0029815:26741-26760 Msa1442220:intron 35.0%
ATCCTGATTATGAGTGTTTG+AGG - tig0029815:26778-26797 Msa1442220:intron 35.0%
AAAAGAGCTTTCCCATTAAC+AGG + tig0029815:26825-26844 None:intergenic 35.0%
!! GTTTTGTGGTGGAATTGAAT+TGG - tig0029815:27018-27037 Msa1442220:intron 35.0%
AGCTAACAATAACACGAAAC+CGG + tig0029815:27591-27610 None:intergenic 35.0%
! GTTTCGTGTTATTGTTAGCT+CGG - tig0029815:27591-27610 Msa1442220:intron 35.0%
TCGTGGTAAAGAAAAGCTAT+CGG - tig0029815:27716-27735 Msa1442220:intron 35.0%
GTAAAGAAAAGCTATCGGTA+GGG - tig0029815:27721-27740 Msa1442220:intron 35.0%
AACTAAAATCACCGAGTTTG+AGG + tig0029815:27987-28006 None:intergenic 35.0%
TTCAACACTAGAACACTATC+AGG + tig0029815:28194-28213 None:intergenic 35.0%
TCGTGGTAAAGAAAAGCTAT+CGG - tig0029815:27716-27735 Msa1442220:intron 35.0%
GTAAAGAAAAGCTATCGGTA+GGG - tig0029815:27721-27740 Msa1442220:intron 35.0%
TCGGTAGGGTTATTATCAAT+CGG - tig0029815:28261-28280 Msa1442220:intron 35.0%
ATGCAATCATAGATTGAGAC+TGG - tig0029815:28477-28496 Msa1442220:intron 35.0%
! AAATCAGTGAGTTTGAGATC+TGG + tig0029815:28508-28527 None:intergenic 35.0%
ACATTTCTGCCTTGAAATTG+TGG - tig0029815:28703-28722 Msa1442220:intron 35.0%
GGTAAAGAAAAGCTATCAGT+AGG - tig0029815:28724-28743 Msa1442220:intron 35.0%
GAATGAAAGGCAACTTATGT+TGG + tig0029815:28835-28854 None:intergenic 35.0%
GTTGCCTTTCATTCATAACT+AGG - tig0029815:28841-28860 Msa1442220:intron 35.0%
GGCGATTTATTTATGCCATA+AGG - tig0029815:28878-28897 Msa1442220:intron 35.0%
AAAGGCTGAAAGATAAGTGA+GGG + tig0029815:28923-28942 None:intergenic 35.0%
TAAAGGCTGAAAGATAAGTG+AGG + tig0029815:28924-28943 None:intergenic 35.0%
ATAAGTGAGGGAAAGAAATC+TGG + tig0029815:28999-29018 None:intergenic 35.0%
TATGCACCTTCTGTGAATTT+CGG - tig0029815:29085-29104 Msa1442220:intron 35.0%
TAACCTTATGAAGCTCACTT+TGG - tig0029815:29276-29295 Msa1442220:intron 35.0%
CAAAAAGGGAGGAAATACTA+AGG + tig0029815:29313-29332 None:intergenic 35.0%
TGCAGCAACTTAGATTACAT+AGG - tig0029815:29477-29496 Msa1442220:intron 35.0%
AGAATCTTAAGAAACCTGTG+AGG - tig0029815:29617-29636 Msa1442220:intron 35.0%
GAATTCCACAATTTGGCAAT+AGG + tig0029815:29653-29672 None:intergenic 35.0%
ATTGCCAAATTGTGGAATTC+AGG - tig0029815:29653-29672 Msa1442220:intron 35.0%
AACACCTGAATTCCACAATT+TGG + tig0029815:29660-29679 None:intergenic 35.0%
AAATTGTGGAATTCAGGTGT+TGG - tig0029815:29659-29678 Msa1442220:intron 35.0%
AAATGTGAGTTCTGTTCCTT+GGG - tig0029815:29711-29730 Msa1442220:intron 35.0%
!!! TGCAGAAGCATTTTAGAATG+AGG - tig0029815:29759-29778 Msa1442220:intron 35.0%
!!! AAGCATTTTAGAATGAGGAG+TGG - tig0029815:29764-29783 Msa1442220:intron 35.0%
!!! AGCATTTTAGAATGAGGAGT+GGG - tig0029815:29765-29784 Msa1442220:intron 35.0%
! TAGGAAAGGGGTGTAAAATT+GGG - tig0029815:29826-29845 Msa1442220:intron 35.0%
TTTACAGTTTGACACCACAA+GGG + tig0029815:30089-30108 None:intergenic 35.0%
ACTCTGAATACAATGACGAT+GGG + tig0029815:30373-30392 None:intergenic 35.0%
AACTCTGAATACAATGACGA+TGG + tig0029815:30374-30393 None:intergenic 35.0%
TAAAACTGAGGTTTGCCATA+TGG - tig0029815:30423-30442 Msa1442220:intron 35.0%
GACTAAAATTCTCCAAAGTC+AGG - tig0029815:30476-30495 Msa1442220:intron 35.0%
!! AAACGGATTCTCTGACTTTT+GGG + tig0029815:30514-30533 None:intergenic 35.0%
AGAATCCGTTTCCGTAAAAT+TGG - tig0029815:30523-30542 Msa1442220:intron 35.0%
!! TATATGACACAGAAGGTGTT+GGG - tig0029815:30663-30682 Msa1442220:intron 35.0%
TTCACGTAATGTAATTGCTC+TGG - tig0029815:30843-30862 Msa1442220:intron 35.0%
! TCTGGTTCATTTGCAAAAGT+TGG - tig0029815:30861-30880 Msa1442220:intron 35.0%
TGTGTGTGAAACCACAATTT+CGG + tig0029815:31150-31169 None:intergenic 35.0%
ACATATTGGACATATCAAGC+TGG - tig0029815:31187-31206 Msa1442220:intron 35.0%
AGTATCTTCTTTATGGCTCT+AGG - tig0029815:31254-31273 Msa1442220:intron 35.0%
AATAGCTAATTGTTGGGTGA+AGG + tig0029815:31281-31300 None:intergenic 35.0%
!! ATTGATGCTGTGTGTTTTTG+CGG - tig0029815:31302-31321 Msa1442220:intron 35.0%
CTCATTGTGAAGGAATTACT+TGG - tig0029815:31564-31583 Msa1442220:intron 35.0%
TATCAACCAGGGTCTAAATA+AGG - tig0029815:31630-31649 Msa1442220:intron 35.0%
AGTGTCAATAGGTTTACAGT+GGG - tig0029815:31696-31715 Msa1442220:intron 35.0%
! GGTCTTGTGAAGGAATTATT+GGG - tig0029815:31717-31736 Msa1442220:intron 35.0%
TTTAGATCTAGGCAGATACA+GGG + tig0029815:31770-31789 None:intergenic 35.0%
ATTTAGATCTAGGCAGATAC+AGG + tig0029815:31771-31790 None:intergenic 35.0%
CATCAAACTATGACCAGATT+AGG + tig0029815:31803-31822 None:intergenic 35.0%
GAGTGTCAATAGGTTTACAA+TGG - tig0029815:31836-31855 Msa1442220:intron 35.0%
GAGTACATCATTGGAACAAA+TGG + tig0029815:32060-32079 None:intergenic 35.0%
CTAACAAAAACTTGCCATAG+TGG + tig0029815:32181-32200 None:intergenic 35.0%
AGAAAAGGACAATGTTCTAC+AGG + tig0029815:32376-32395 None:intergenic 35.0%
GTTGTATGCCTAACAAGAAA+AGG + tig0029815:32391-32410 None:intergenic 35.0%
CCGGCTATTTAGTAAAGAAA+TGG + tig0029815:32417-32436 None:intergenic 35.0%
TTTATATCCTACCACAACCA+CGG + tig0029815:32481-32500 None:intergenic 35.0%
! CTCATCTAACCCGATTATTT+TGG + tig0029815:32526-32545 None:intergenic 35.0%
GTGCATAATTAGTAACTTGG+AGG + tig0029815:32678-32697 None:intergenic 35.0%
! CAGAATTGTTGATAAGTCTG+TGG - tig0029815:32743-32762 Msa1442220:intron 35.0%
CTAGCACTCACTTTCTTATT+TGG - tig0029815:32989-33008 Msa1442220:intron 35.0%
CTTATTGGGTGAAAACAATG+TGG + tig0029815:33071-33090 None:intergenic 35.0%
! CACAATACAAGCTAGCTTAA+AGG - tig0029815:33155-33174 Msa1442220:intron 35.0%
ACAGCTAAACTAGTAAACCT+AGG + tig0029815:33227-33246 None:intergenic 35.0%
!! CAATGTCTATTGGTTTGAGT+AGG + tig0029815:33608-33627 None:intergenic 35.0%
ATGATCTGTTTCAGAAGTTG+TGG - tig0029815:33703-33722 Msa1442220:CDS 35.0%
! ACTTGAAGATATGCTCTGAA+TGG - tig0029815:33753-33772 Msa1442220:CDS 35.0%
! GCTCAAAGCATTAAAATCAG+AGG + tig0029815:33789-33808 None:intergenic 35.0%
!! CTGATTTTAATGCTTTGAGC+AGG - tig0029815:33789-33808 Msa1442220:CDS 35.0%
TTAAACCATTGCCATTCTCA+TGG - tig0029815:33887-33906 Msa1442220:CDS 35.0%
! AGTTGACTCCAATAAACATG+TGG - tig0029815:34032-34051 Msa1442220:CDS 35.0%
ACGATGAACCACATGTTTAT+TGG + tig0029815:34043-34062 None:intergenic 35.0%
GAGGAAGATGAAGATGAAGA+GGG + tig0029815:26378-26397 None:intergenic 40.0%
AGAGGAAGATGAAGATGAAG+AGG + tig0029815:26379-26398 None:intergenic 40.0%
AGTTGCAGAGATTGTTGCAA+TGG + tig0029815:26416-26435 None:intergenic 40.0%
GTTGAAGATGTAGAGGATGT+AGG + tig0029815:26517-26536 None:intergenic 40.0%
TGATGAATGCGAGGATGTAA+GGG + tig0029815:26578-26597 None:intergenic 40.0%
ATGATGAATGCGAGGATGTA+AGG + tig0029815:26579-26598 None:intergenic 40.0%
GCATTCATCATCTTCTCCAT+CGG - tig0029815:26588-26607 Msa1442220:three_prime_UTR 40.0%
TAAAGGGTTGAAGAAAGCGA+CGG - tig0029815:26674-26693 Msa1442220:intron 40.0%
AGAAACTTCCTTGGAAAGGT+GGG - tig0029815:26745-26764 Msa1442220:intron 40.0%
GACCTCAAACACTCATAATC+AGG + tig0029815:26783-26802 None:intergenic 40.0%
! AGTGTTTGAGGTCTGAGTTA+AGG - tig0029815:26790-26809 Msa1442220:intron 40.0%
GAGGTCTGAGTTAAGGAAAA+TGG - tig0029815:26797-26816 Msa1442220:intron 40.0%
AGGAAAATGGCTCCTGTTAA+TGG - tig0029815:26810-26829 Msa1442220:intron 40.0%
GGAAAATGGCTCCTGTTAAT+GGG - tig0029815:26811-26830 Msa1442220:intron 40.0%
!!! TTGCTTTTTAGAGCTCCTTG+TGG - tig0029815:26843-26862 Msa1442220:intron 40.0%
TTCTGACGCTTTCCTTTCTT+AGG + tig0029815:26900-26919 None:intergenic 40.0%
GCATGTCATTAATGACTGCA+GGG + tig0029815:27409-27428 None:intergenic 40.0%
TGCATGTCATTAATGACTGC+AGG + tig0029815:27410-27429 None:intergenic 40.0%
ATGCATTCGTAGATTGAGAC+TGG - tig0029815:27433-27452 Msa1442220:intron 40.0%
GGTAAAGAAAAGCTATCGGT+AGG - tig0029815:27720-27739 Msa1442220:intron 40.0%
TCGGTAGGGTTATTATCAAC+CGG - tig0029815:27735-27754 Msa1442220:intron 40.0%
ATGCAATCGTAGATTGAGAC+CGG - tig0029815:27951-27970 Msa1442220:intron 40.0%
GGTAAAGAAAAGCTATCGGT+AGG - tig0029815:27720-27739 Msa1442220:intron 40.0%
CGGTAGGGTTATTATCAATC+GGG - tig0029815:28262-28281 Msa1442220:intron 40.0%
ACTGCGCATATTCATACAGT+AGG + tig0029815:28602-28621 None:intergenic 40.0%
AGCAAACAATAACACGAACC+CGG + tig0029815:28642-28661 None:intergenic 40.0%
! GGTTCGTGTTATTGTTTGCT+CGG - tig0029815:28642-28661 Msa1442220:intron 40.0%
AGATCTGGATAAACCCCTTA+TGG + tig0029815:28896-28915 None:intergenic 40.0%
ATAAGTGAGGGAAAGAGATC+TGG + tig0029815:28911-28930 None:intergenic 40.0%
ATCAATTTCGGCAGGAGTAA+AGG + tig0029815:28941-28960 None:intergenic 40.0%
GAAATCACATCAATTTCGGC+AGG + tig0029815:28949-28968 None:intergenic 40.0%
TTCAATGGTGATATGCCTTG+AGG - tig0029815:28966-28985 Msa1442220:intron 40.0%
TCAATGGTGATATGCCTTGA+GGG - tig0029815:28967-28986 Msa1442220:intron 40.0%
AAATCTGGATAAACCCCTCA+AGG + tig0029815:28984-29003 None:intergenic 40.0%
TGACATCCGAAATTCACAGA+AGG + tig0029815:29094-29113 None:intergenic 40.0%
TGTATCCACCATGATCTTTC+TGG - tig0029815:29211-29230 Msa1442220:intron 40.0%
GTATCCACCATGATCTTTCT+GGG - tig0029815:29212-29231 Msa1442220:intron 40.0%
TTAACCCAGAAAGATCATGG+TGG + tig0029815:29219-29238 None:intergenic 40.0%
CGTTACCTATTGCCAAATTG+TGG - tig0029815:29645-29664 Msa1442220:intron 40.0%
GAAATGTGAGTTCTGTTCCT+TGG - tig0029815:29710-29729 Msa1442220:intron 40.0%
AACATTGTTCACTCAGTCCT+AGG - tig0029815:29807-29826 Msa1442220:intron 40.0%
! CAATTTTACACCCCTTTCCT+AGG + tig0029815:29827-29846 None:intergenic 40.0%
! CTAGGAAAGGGGTGTAAAAT+TGG - tig0029815:29825-29844 Msa1442220:intron 40.0%
ATCCGGATTGTCTGATGTTA+TGG - tig0029815:29849-29868 Msa1442220:intron 40.0%
ACGTTGAAAATTAAGCCACG+TGG - tig0029815:29921-29940 Msa1442220:intron 40.0%
!!! GCAGCTCAGAGTTTTAAAGT+GGG + tig0029815:29953-29972 None:intergenic 40.0%
TCACTGTAGAAGACGATCTT+AGG + tig0029815:30066-30085 None:intergenic 40.0%
GTTTACAGTTTGACACCACA+AGG + tig0029815:30090-30109 None:intergenic 40.0%
TTCTCCACAAATCATGACAG+CGG + tig0029815:30178-30197 None:intergenic 40.0%
TACAGACTTGCGTAAAACTG+AGG - tig0029815:30411-30430 Msa1442220:intron 40.0%
!! GAAACGGATTCTCTGACTTT+TGG + tig0029815:30515-30534 None:intergenic 40.0%
ATACTATGATACTAGGCCAC+TGG - tig0029815:30623-30642 Msa1442220:intron 40.0%
TGAATTATTTCCTCTGCCAG+TGG + tig0029815:30642-30661 None:intergenic 40.0%
! GTATATGACACAGAAGGTGT+TGG - tig0029815:30662-30681 Msa1442220:intron 40.0%
ACATCTGACTAATCACGTAG+AGG + tig0029815:30812-30831 None:intergenic 40.0%
ACACACACACACACACATAT+TGG - tig0029815:31173-31192 Msa1442220:intron 40.0%
ATATCAAGCTGGAGTTTGAG+AGG - tig0029815:31198-31217 Msa1442220:intron 40.0%
!! AGTGATTGTGTTGACTGTTG+AGG + tig0029815:31360-31379 None:intergenic 40.0%
ATTCCTTCACAATGAGTGTG+TGG + tig0029815:31560-31579 None:intergenic 40.0%
TACTTGGTCTAGTGATCTTG+AGG - tig0029815:31580-31599 Msa1442220:intron 40.0%
! GTTGATACAAGAGACTAGTC+AGG + tig0029815:31617-31636 None:intergenic 40.0%
! ACTAGTCTCTTGTATCAACC+AGG - tig0029815:31618-31637 Msa1442220:intron 40.0%
CTAGTCTCTTGTATCAACCA+GGG - tig0029815:31619-31638 Msa1442220:intron 40.0%
AAACTATGACCAGATCAGGA+GGG + tig0029815:31658-31677 None:intergenic 40.0%
TAAACTATGACCAGATCAGG+AGG + tig0029815:31659-31678 None:intergenic 40.0%
CAGTAAACTATGACCAGATC+AGG + tig0029815:31662-31681 None:intergenic 40.0%
GAGTGTCAATAGGTTTACAG+TGG - tig0029815:31695-31714 Msa1442220:intron 40.0%
! GGGTCTTGTGAAGGAATTAT+TGG - tig0029815:31716-31735 Msa1442220:intron 40.0%
TATTGGGTCTAGTTATTGCG+AGG - tig0029815:31733-31752 Msa1442220:intron 40.0%
GAGGAGCCTAATTTAGATCT+AGG + tig0029815:31781-31800 None:intergenic 40.0%
AAATTAGGCTCCTCCTAATC+TGG - tig0029815:31787-31806 Msa1442220:intron 40.0%
CAAACTATGACCAGATTAGG+AGG + tig0029815:31800-31819 None:intergenic 40.0%
!! TAAATGCTTCCTTGGTCTTG+AGG + tig0029815:31943-31962 None:intergenic 40.0%
!! TCAAGACCAAGGAAGCATTT+AGG - tig0029815:31942-31961 Msa1442220:intron 40.0%
AGGAAACCTAAATGCTTCCT+TGG + tig0029815:31951-31970 None:intergenic 40.0%
TAGTGGCAATTATACAGCAC+TGG + tig0029815:32164-32183 None:intergenic 40.0%
GTGCTGTATAATTGCCACTA+TGG - tig0029815:32164-32183 Msa1442220:intron 40.0%
TTATATCCTACCACAACCAC+GGG + tig0029815:32480-32499 None:intergenic 40.0%
!! GTCTATTGGTTTGAGTAGGA+AGG + tig0029815:33604-33623 None:intergenic 40.0%
ACACCCAATGCAACTCTTAA+TGG - tig0029815:33815-33834 Msa1442220:CDS 40.0%
CCTCCATTAAGAGTTGCATT+GGG + tig0029815:33821-33840 None:intergenic 40.0%
TCCTCCATTAAGAGTTGCAT+TGG + tig0029815:33822-33841 None:intergenic 40.0%
AATGCAACTCTTAATGGAGG+AGG - tig0029815:33821-33840 Msa1442220:CDS 40.0%
AGTAACCATGAGAATGGCAA+TGG + tig0029815:33895-33914 None:intergenic 40.0%
! ATGGTGGCGTAATGATGAAG+AGG + tig0029815:26397-26416 None:intergenic 45.0%
TGCAGAGATTGTTGCAATGG+TGG + tig0029815:26413-26432 None:intergenic 45.0%
TGTAGAGGATGTAGGAAGAG+AGG + tig0029815:26509-26528 None:intergenic 45.0%
AGAGGGAGTTGAAGATGTAG+AGG + tig0029815:26524-26543 None:intergenic 45.0%
AATGCGAGGATGTAAGGGAT+GGG + tig0029815:26573-26592 None:intergenic 45.0%
TGGAGAAGATGATGAATGCG+AGG + tig0029815:26587-26606 None:intergenic 45.0%
!! TTCTCCATCGGTTTCGTCTT+CGG - tig0029815:26600-26619 Msa1442220:exon 45.0%
AAAACCGAAGACGAAACCGA+TGG + tig0029815:26607-26626 None:intergenic 45.0%
GAGAGATTAGGGTTAGGGTT+TGG - tig0029815:26714-26733 Msa1442220:intron 45.0%
GAGAAACTTCCTTGGAAAGG+TGG - tig0029815:26744-26763 Msa1442220:intron 45.0%
TTAGCAACAGGACAACCACA+AGG + tig0029815:26861-26880 None:intergenic 45.0%
GAAGCTTCAAGCTTAGCAAC+AGG + tig0029815:26873-26892 None:intergenic 45.0%
GTTGCTAAGCTTGAAGCTTC+TGG - tig0029815:26873-26892 Msa1442220:intron 45.0%
GAAGCTTCTGGTCCTAAGAA+AGG - tig0029815:26885-26904 Msa1442220:intron 45.0%
!! AGAAAGGAAAGCGTCAGAAG+AGG - tig0029815:26901-26920 Msa1442220:intron 45.0%
ACAACAAGCAGTAGAACACG+TGG + tig0029815:27353-27372 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - tig0029815:27353-27372 Msa1442220:intron 45.0%
! CTTGTTGTAGGCGAGGTTAT+TGG - tig0029815:27365-27384 Msa1442220:intron 45.0%
GAGGTTATTGGAACCTGGAT+TGG - tig0029815:27377-27396 Msa1442220:intron 45.0%
! GTTATTGGAACCTGGATTGG+TGG - tig0029815:27380-27399 Msa1442220:intron 45.0%
TTGGGCTGTCCAATCTTGAT+CGG - tig0029815:27510-27529 Msa1442220:intron 45.0%
CAATCTTGATCGGACGATTG+CGG - tig0029815:27520-27539 Msa1442220:intron 45.0%
CTGCGCACATTCATACAGTT+GGG + tig0029815:27550-27569 None:intergenic 45.0%
ACTGCGCACATTCATACAGT+TGG + tig0029815:27551-27570 None:intergenic 45.0%
CGGTAGGGTTATTATCAACC+GGG - tig0029815:27736-27755 Msa1442220:intron 45.0%
TGTACCACAACAAGTCAACC+CGG + tig0029815:27757-27776 None:intergenic 45.0%
ACAACAAGCAGTAGAACACG+TGG + tig0029815:27353-27372 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - tig0029815:27353-27372 Msa1442220:intron 45.0%
! CTTGTTGTAGGCGAGGTTAT+TGG - tig0029815:27365-27384 Msa1442220:intron 45.0%
! AAATCACCGAGTTTGAGGTC+CGG + tig0029815:27982-28001 None:intergenic 45.0%
CGTGATCGTCCAATCAAGAT+CGG + tig0029815:28048-28067 None:intergenic 45.0%
CGATCTTGATTGGACGATCA+CGG - tig0029815:28046-28065 Msa1442220:intron 45.0%
CTGCGCACATTCATACAGTT+AGG + tig0029815:27550-27569 None:intergenic 45.0%
!! TCAATCGGGTTGACTTGTTG+TGG - tig0029815:28276-28295 Msa1442220:intron 45.0%
!! CAATCGGGTTGACTTGTTGT+GGG - tig0029815:28277-28296 Msa1442220:intron 45.0%
TGTGTTCCCTCTTTCTTGGT+GGG - tig0029815:28346-28365 Msa1442220:intron 45.0%
ACAACAAGCAGTAGAACACG+TGG + tig0029815:27353-27372 None:intergenic 45.0%
!! CGTGTTCTACTGCTTGTTGT+AGG - tig0029815:27353-27372 Msa1442220:intron 45.0%
! CTTGTTGTAGGCGAGGTTAT+TGG - tig0029815:27365-27384 Msa1442220:intron 45.0%
GAGGTTATTGGAACCTGGAT+TGG - tig0029815:27377-27396 Msa1442220:intron 45.0%
! GTTATTGGAACCTGGATTGG+CGG - tig0029815:27380-27399 Msa1442220:intron 45.0%
CGTGATCGTCCAATCAAGAT+CGG + tig0029815:28048-28067 None:intergenic 45.0%
TGAATATGCGCAGTCAGCAA+CGG - tig0029815:28608-28627 Msa1442220:intron 45.0%
CAATGGTGATATGCCTTGAG+GGG - tig0029815:28968-28987 Msa1442220:intron 45.0%
CCTCCAAAGTGAGCTTCATA+AGG + tig0029815:29282-29301 None:intergenic 45.0%
CCTTATGAAGCTCACTTTGG+AGG - tig0029815:29279-29298 Msa1442220:intron 45.0%
TAGGTAACGAACAACCTCAC+AGG + tig0029815:29634-29653 None:intergenic 45.0%
GGACTGAGTGAACAATGTTC+AGG + tig0029815:29806-29825 None:intergenic 45.0%
TGTTCACTCAGTCCTAGGAA+AGG - tig0029815:29812-29831 Msa1442220:intron 45.0%
GTTCACTCAGTCCTAGGAAA+GGG - tig0029815:29813-29832 Msa1442220:intron 45.0%
TTCACTCAGTCCTAGGAAAG+GGG - tig0029815:29814-29833 Msa1442220:intron 45.0%
! AGGGGTGTAAAATTGGGATC+CGG - tig0029815:29832-29851 Msa1442220:intron 45.0%
CGCCATAACATCAGACAATC+CGG + tig0029815:29854-29873 None:intergenic 45.0%
CGGATTGTCTGATGTTATGG+CGG - tig0029815:29852-29871 Msa1442220:intron 45.0%
GGATTGTCTGATGTTATGGC+GGG - tig0029815:29853-29872 Msa1442220:intron 45.0%
!!! CGCAGCTCAGAGTTTTAAAG+TGG + tig0029815:29954-29973 None:intergenic 45.0%
!! CTTTAAAACTCTGAGCTGCG+TGG - tig0029815:29954-29973 Msa1442220:intron 45.0%
TTGTGGCGTACAACCTTCTA+TGG + tig0029815:30016-30035 None:intergenic 45.0%
ATCTTAGGACCAAACTGCAG+TGG + tig0029815:30051-30070 None:intergenic 45.0%
AGAAAATCTACTTCCGCCGT+CGG - tig0029815:30194-30213 Msa1442220:intron 45.0%
AATGACGATGGGTAGCTGAA+GGG + tig0029815:30362-30381 None:intergenic 45.0%
GCGTTCAGAACTTTGCCATA+TGG + tig0029815:30441-30460 None:intergenic 45.0%
!! TATGGCAAAGTTCTGAACGC+TGG - tig0029815:30441-30460 Msa1442220:intron 45.0%
TTGTGTAGCTGTCACATCCT+TGG + tig0029815:31436-31455 None:intergenic 45.0%
TCACCACACACTCATTGTGA+AGG - tig0029815:31554-31573 Msa1442220:intron 45.0%
! GTTTACAGTGGGTCTTGTGA+AGG - tig0029815:31707-31726 Msa1442220:intron 45.0%
ACTAAGCTACCTCAAGACCA+AGG - tig0029815:31931-31950 Msa1442220:intron 45.0%
TTGAGAAATGTACGCCGACA+AGG - tig0029815:32546-32565 Msa1442220:intron 45.0%
GAACAAATGACTGCACACTC+TGG - tig0029815:32859-32878 Msa1442220:intron 45.0%
TGGGACTCACTTCCAAAATG+TGG - tig0029815:33042-33061 Msa1442220:intron 45.0%
GGGACTCACTTCCAAAATGT+GGG - tig0029815:33043-33062 Msa1442220:intron 45.0%
! ACAATGTGGGTCCCACATTT+TGG + tig0029815:33057-33076 None:intergenic 45.0%
! TCACGAAGAGAAGGCATGTT+AGG + tig0029815:33284-33303 None:intergenic 45.0%
ACCTTACATGTGTGTAGCCT+AGG - tig0029815:33319-33338 Msa1442220:intron 45.0%
ACCTAGGCTACACACATGTA+AGG + tig0029815:33323-33342 None:intergenic 45.0%
TTACATGTGTGTAGCCTAGG+TGG - tig0029815:33322-33341 Msa1442220:intron 45.0%
CCCAATGCAACTCTTAATGG+AGG - tig0029815:33818-33837 Msa1442220:CDS 45.0%
TGGGCAGTTCAGATACAAGA+AGG + tig0029815:33979-33998 None:intergenic 45.0%
! GGGATAGAGTCGGCAATTTT+AGG + tig0029815:34093-34112 None:intergenic 45.0%
!! AGATGAAGAGGGCATTGCTG+TGG + tig0029815:26367-26386 None:intergenic 50.0%
AGAGGATGTAGGAAGAGAGG+AGG + tig0029815:26506-26525 None:intergenic 50.0%
ATGCGAGGATGTAAGGGATG+GGG + tig0029815:26572-26591 None:intergenic 50.0%
GAATGCGAGGATGTAAGGGA+TGG + tig0029815:26574-26593 None:intergenic 50.0%
! TGTGAGCGGAAAGGGTGTAA+AGG - tig0029815:26657-26676 Msa1442220:intron 50.0%
! GTGAGCGGAAAGGGTGTAAA+GGG - tig0029815:26658-26677 Msa1442220:intron 50.0%
CTTGGAAAGGTGGGAGTGAA+GGG - tig0029815:26754-26773 Msa1442220:intron 50.0%
!! GGAAAGCGTCAGAAGAGGTT+AGG - tig0029815:26906-26925 Msa1442220:intron 50.0%
!! TCTACTGCTTGTTGTAGGCG+AGG - tig0029815:27358-27377 Msa1442220:intron 50.0%
TAGGCGAGGTTATTGGAACC+TGG - tig0029815:27372-27391 Msa1442220:intron 50.0%
CGCAATCGTCCGATCAAGAT+TGG + tig0029815:27522-27541 None:intergenic 50.0%
TGAATGTGCGCAGTCTGCAA+CGG - tig0029815:27557-27576 Msa1442220:intron 50.0%
!! TCAACCGGGTTGACTTGTTG+TGG - tig0029815:27750-27769 Msa1442220:intron 50.0%
TGCGTTCCCTCTTTCTTGGT+GGG - tig0029815:27820-27839 Msa1442220:intron 50.0%
CAATCCCCCACCAAGAAAGA+GGG + tig0029815:27829-27848 None:intergenic 50.0%
ACAATCCCCCACCAAGAAAG+AGG + tig0029815:27830-27849 None:intergenic 50.0%
!! TCTACTGCTTGTTGTAGGCG+AGG - tig0029815:27358-27377 Msa1442220:intron 50.0%
TAGGCGAGGTTATTGGAACC+CGG - tig0029815:27372-27391 Msa1442220:intron 50.0%
GAGGTTATTGGAACCCGGAT+TGG - tig0029815:27895-27914 Msa1442220:intron 50.0%
! GTTATTGGAACCCGGATTGG+CGG - tig0029815:27898-27917 Msa1442220:intron 50.0%
TAGATTGAGACCGGACAGTC+CGG - tig0029815:27960-27979 Msa1442220:intron 50.0%
TTGGGCTGTCCGATCTTGAT+TGG - tig0029815:28036-28055 Msa1442220:intron 50.0%
TGAATGTGCGCAGTCAGCAA+CGG - tig0029815:28083-28102 Msa1442220:intron 50.0%
GAGCTGTGTTCCCTCTTTCT+TGG - tig0029815:28342-28361 Msa1442220:intron 50.0%
CTGTGTTCCCTCTTTCTTGG+TGG - tig0029815:28345-28364 Msa1442220:intron 50.0%
GTGTTCCCTCTTTCTTGGTG+GGG - tig0029815:28347-28366 Msa1442220:intron 50.0%
TGTTCCCTCTTTCTTGGTGG+GGG - tig0029815:28348-28367 Msa1442220:intron 50.0%
CAATCCCCCACCAAGAAAGA+GGG + tig0029815:27829-27848 None:intergenic 50.0%
ACAATCCCCCACCAAGAAAG+AGG + tig0029815:27830-27849 None:intergenic 50.0%
!! TCTACTGCTTGTTGTAGGCG+AGG - tig0029815:27358-27377 Msa1442220:intron 50.0%
TAGGCGAGGTTATTGGAACC+TGG - tig0029815:27372-27391 Msa1442220:intron 50.0%
! GTGTGTCGTTAGTGACTGCA+GGG + tig0029815:28453-28472 None:intergenic 50.0%
! TGTGTGTCGTTAGTGACTGC+AGG + tig0029815:28454-28473 None:intergenic 50.0%
TTGGGCTGTCCGATCTTGAT+TGG - tig0029815:28036-28055 Msa1442220:intron 50.0%
! TGGTGGATACATCCGTACTC+AGG + tig0029815:29202-29221 None:intergenic 50.0%
! ATGAGGAGTGGGCTTAGACT+AGG - tig0029815:29776-29795 Msa1442220:intron 50.0%
AACGGGCAAACCTTTCCCAA+AGG + tig0029815:29890-29909 None:intergenic 50.0%
TAAAGTGGGTCAGTTCCACG+TGG + tig0029815:29939-29958 None:intergenic 50.0%
TAAAACTCTGAGCTGCGTGG+TGG - tig0029815:29957-29976 Msa1442220:intron 50.0%
TATGGCTAGTGTGACCTCCA+TGG + tig0029815:29998-30017 None:intergenic 50.0%
GAGGTCACACTAGCCATAGA+AGG - tig0029815:30000-30019 Msa1442220:intron 50.0%
GTCTTCTACAGTGACCCTTG+TGG - tig0029815:30072-30091 Msa1442220:intron 50.0%
TCCACAAATCATGACAGCGG+AGG + tig0029815:30175-30194 None:intergenic 50.0%
! TAGGGAGAGATCTGAGATGG+TGG + tig0029815:30235-30254 None:intergenic 50.0%
GTGTAGGGAGAGATCTGAGA+TGG + tig0029815:30238-30257 None:intergenic 50.0%
CTCTCCCTACACTTCGTACT+CGG - tig0029815:30246-30265 Msa1442220:intron 50.0%
ACCACCGAGTACGAAGTGTA+GGG + tig0029815:30253-30272 None:intergenic 50.0%
!! GGTGGTGTTGCATGGATTTG+TGG - tig0029815:30267-30286 Msa1442220:intron 50.0%
ATGACGATGGGTAGCTGAAG+GGG + tig0029815:30361-30380 None:intergenic 50.0%
CAATGACGATGGGTAGCTGA+AGG + tig0029815:30363-30382 None:intergenic 50.0%
CTGGGCTACGTAAAGCATGT+AGG - tig0029815:30686-30705 Msa1442220:intron 50.0%
!! AGGGAGCCTTATTTAGACCC+TGG + tig0029815:31639-31658 None:intergenic 50.0%
AATAAGGCTCCCTCCTGATC+TGG - tig0029815:31646-31665 Msa1442220:intron 50.0%
!! ATGATAAAAAGAGGCGCCCG+TGG - tig0029815:32461-32480 Msa1442220:intron 50.0%
TCAGTCCCACCACTTCATGT+GGG - tig0029815:33023-33042 Msa1442220:intron 50.0%
TGAGTCCCACATGAAGTGGT+GGG + tig0029815:33031-33050 None:intergenic 50.0%
GAAGTGAGTCCCACATGAAG+TGG + tig0029815:33035-33054 None:intergenic 50.0%
GCAAAAGGCTCACGAAGAGA+AGG + tig0029815:33293-33312 None:intergenic 50.0%
AGCCTAGGTGGATAGCATAG+AGG - tig0029815:33334-33353 Msa1442220:intron 50.0%
GCCTAGGTGGATAGCATAGA+GGG - tig0029815:33335-33354 Msa1442220:intron 50.0%
CACGGCCTATGGAAGAAGTA+GGG - tig0029815:33366-33385 Msa1442220:intron 50.0%
ACGGCCTATGGAAGAAGTAG+GGG - tig0029815:33367-33386 Msa1442220:intron 50.0%
TATGGAAGAAGTAGGGGTGG+CGG - tig0029815:33373-33392 Msa1442220:intron 50.0%
TATGTGACATGCCTACGCAG+TGG + tig0029815:33864-33883 None:intergenic 50.0%
AGAGAACGAGGAGGAGGATG+AGG + tig0029815:26470-26489 None:intergenic 55.0%
CTCCTCCTCGTTCTCTTCTC+CGG - tig0029815:26474-26493 Msa1442220:three_prime_UTR 55.0%
GGATGGGGAGAGAGAAGGAA+GGG + tig0029815:26557-26576 None:intergenic 55.0%
GTAAGGGATGGGGAGAGAGA+AGG + tig0029815:26562-26581 None:intergenic 55.0%
TATGTTGCGGTGCTCGATCG+AGG - tig0029815:26631-26650 Msa1442220:CDS 55.0%
! CTCGATCGAGGAAGTGTGAG+CGG - tig0029815:26643-26662 Msa1442220:intron 55.0%
! TCGAGGAAGTGTGAGCGGAA+AGG - tig0029815:26648-26667 Msa1442220:intron 55.0%
! CGAGGAAGTGTGAGCGGAAA+GGG - tig0029815:26649-26668 Msa1442220:intron 55.0%
CCTTCACTCCCACCTTTCCA+AGG + tig0029815:26756-26775 None:intergenic 55.0%
CCTTGGAAAGGTGGGAGTGA+AGG - tig0029815:26753-26772 Msa1442220:intron 55.0%
GAACCGTGTGCCCTCTTTCT+TGG - tig0029815:27298-27317 Msa1442220:intron 55.0%
CAATCCCCCGCCAAGAAAGA+GGG + tig0029815:27311-27330 None:intergenic 55.0%
ACAATCCCCCGCCAAGAAAG+AGG + tig0029815:27312-27331 None:intergenic 55.0%
TGCAGGGAATCCACCAATCC+AGG + tig0029815:27393-27412 None:intergenic 55.0%
GAGCTGCGTTCCCTCTTTCT+TGG - tig0029815:27816-27835 Msa1442220:intron 55.0%
CTGCGTTCCCTCTTTCTTGG+TGG - tig0029815:27819-27838 Msa1442220:intron 55.0%
GCGTTCCCTCTTTCTTGGTG+GGG - tig0029815:27821-27840 Msa1442220:intron 55.0%
CGTTCCCTCTTTCTTGGTGG+GGG - tig0029815:27822-27841 Msa1442220:intron 55.0%
! AGTTTGAGGTCCGGACTGTC+CGG + tig0029815:27973-27992 None:intergenic 55.0%
GACAGTCCGGACCTCAAACT+CGG - tig0029815:27973-27992 Msa1442220:intron 55.0%
GTCAGCAACGGCAGTGAATC+CGG - tig0029815:28620-28639 Msa1442220:intron 55.0%
TCAGCAACGGCAGTGAATCC+GGG - tig0029815:28621-28640 Msa1442220:intron 55.0%
! ACGTCACCTGCCTTTGGGAA+AGG - tig0029815:29877-29896 Msa1442220:intron 55.0%
GGCAAACCTTTCCCAAAGGC+AGG + tig0029815:29886-29905 None:intergenic 55.0%
!! AGTGGCTGGTTTGGCAGTTG+TGG + tig0029815:30033-30052 None:intergenic 55.0%
! CCAAACTGCAGTGGCTGGTT+TGG + tig0029815:30042-30061 None:intergenic 55.0%
CCAAACCAGCCACTGCAGTT+TGG - tig0029815:30039-30058 Msa1442220:intron 55.0%
TAGGACCAAACTGCAGTGGC+TGG + tig0029815:30047-30066 None:intergenic 55.0%
CAAATCATGACAGCGGAGGC+AGG + tig0029815:30171-30190 None:intergenic 55.0%
GCCTCCGCTGTCATGATTTG+TGG - tig0029815:30171-30190 Msa1442220:intron 55.0%
! GGAGAGATCTGAGATGGTGG+CGG + tig0029815:30232-30251 None:intergenic 55.0%
TCCCTACACTTCGTACTCGG+TGG - tig0029815:30249-30268 Msa1442220:intron 55.0%
CACCACCGAGTACGAAGTGT+AGG + tig0029815:30254-30273 None:intergenic 55.0%
!! TCGTACTCGGTGGTGTTGCA+TGG - tig0029815:30259-30278 Msa1442220:intron 55.0%
GTTGCATGGATTTGTGGCCG+TGG - tig0029815:30273-30292 Msa1442220:intron 55.0%
AACGTCGACGTTGCTCACCA+CGG + tig0029815:30293-30312 None:intergenic 55.0%
TGAACCACCGGTCATGCCAA+CGG + tig0029815:30338-30357 None:intergenic 55.0%
TAGCTGAAGGGGTGAACCAC+CGG + tig0029815:30350-30369 None:intergenic 55.0%
CTCCAAAGTCAGGGTGCAGT+TGG - tig0029815:30486-30505 Msa1442220:intron 55.0%
CACCAACTGCACCCTGACTT+TGG + tig0029815:30491-30510 None:intergenic 55.0%
TGATACTAGGCCACTGGCAG+AGG - tig0029815:30629-30648 Msa1442220:intron 55.0%
!! TGACACAGAAGGTGTTGGGC+TGG - tig0029815:30667-30686 Msa1442220:intron 55.0%
!! GACACAGAAGGTGTTGGGCT+GGG - tig0029815:30668-30687 Msa1442220:intron 55.0%
TGGGTGTGTGTGTGTGTGTG+TGG - tig0029815:31476-31495 Msa1442220:intron 55.0%
GTCAGTCCCACCACTTCATG+TGG - tig0029815:33022-33041 Msa1442220:intron 55.0%
GTGAGTCCCACATGAAGTGG+TGG + tig0029815:33032-33051 None:intergenic 55.0%
GCCCTCTATGCTATCCACCT+AGG + tig0029815:33339-33358 None:intergenic 55.0%
GCATAGAGGGCCACATTCCA+CGG - tig0029815:33348-33367 Msa1442220:intron 55.0%
CTTCCATAGGCCGTGGAATG+TGG + tig0029815:33361-33380 None:intergenic 55.0%
CCTACTTCTTCCATAGGCCG+TGG + tig0029815:33368-33387 None:intergenic 55.0%
CCACGGCCTATGGAAGAAGT+AGG - tig0029815:33365-33384 Msa1442220:intron 55.0%
GCCTATGGAAGAAGTAGGGG+TGG - tig0029815:33370-33389 Msa1442220:intron 55.0%
GCCACCCCTACTTCTTCCAT+AGG + tig0029815:33374-33393 None:intergenic 55.0%
ATGGAAGAAGTAGGGGTGGC+GGG - tig0029815:33374-33393 Msa1442220:intron 55.0%
! GAGAGCTTTGTCCCCCAAAG+TGG + tig0029815:33520-33539 None:intergenic 55.0%
TCGTTGATCCACCACTGCGT+AGG - tig0029815:33850-33869 Msa1442220:CDS 55.0%
GAGGAGGATGAGGAGGTCGA+GGG + tig0029815:26460-26479 None:intergenic 60.0%
GAACGAGGAGGAGGATGAGG+AGG + tig0029815:26467-26486 None:intergenic 60.0%
CGGAGAAGAGAACGAGGAGG+AGG + tig0029815:26476-26495 None:intergenic 60.0%
GGAAGGGAGGAGGAGAGAGA+GGG + tig0029815:26541-26560 None:intergenic 60.0%
AGGAAGGGAGGAGGAGAGAG+AGG + tig0029815:26542-26561 None:intergenic 60.0%
GGAGAGAGAAGGAAGGGAGG+AGG + tig0029815:26551-26570 None:intergenic 60.0%
TGGGGAGAGAGAAGGAAGGG+AGG + tig0029815:26554-26573 None:intergenic 60.0%
GGGATGGGGAGAGAGAAGGA+AGG + tig0029815:26558-26577 None:intergenic 60.0%
! CCGCCAAGAAAGAGGGCACA+CGG + tig0029815:27304-27323 None:intergenic 60.0%
CCGTGTGCCCTCTTTCTTGG+CGG - tig0029815:27301-27320 Msa1442220:intron 60.0%
CGTGTGCCCTCTTTCTTGGC+GGG - tig0029815:27302-27321 Msa1442220:intron 60.0%
GTGTGCCCTCTTTCTTGGCG+GGG - tig0029815:27303-27322 Msa1442220:intron 60.0%
TGTGCCCTCTTTCTTGGCGG+GGG - tig0029815:27304-27323 Msa1442220:intron 60.0%
GTCTGCAACGGCAGGGAATC+CGG - tig0029815:27569-27588 Msa1442220:intron 60.0%
TGCAGCGAATCCGCCAATCC+GGG + tig0029815:27911-27930 None:intergenic 60.0%
CTGCAGCGAATCCGCCAATC+CGG + tig0029815:27912-27931 None:intergenic 60.0%
TGCAGGGAATCCGCCAATCC+AGG + tig0029815:28437-28456 None:intergenic 60.0%
CGGGAACGTCACCTGCCTTT+GGG - tig0029815:29872-29891 Msa1442220:intron 60.0%
! AGCTGCGTGGTGGAGACGAA+GGG - tig0029815:29967-29986 Msa1442220:intron 60.0%
GGAGACGAAGGGTTGTGCCA+TGG - tig0029815:29978-29997 Msa1442220:intron 60.0%
GACGAAGGGTTGTGCCATGG+AGG - tig0029815:29981-30000 Msa1442220:intron 60.0%
GGTGAGCAACGTCGACGTTG+TGG - tig0029815:30294-30313 Msa1442220:intron 60.0%
GAGCAACGTCGACGTTGTGG+TGG - tig0029815:30297-30316 Msa1442220:intron 60.0%
AAGGCCTCCGTTGGCATGAC+CGG - tig0029815:30328-30347 Msa1442220:intron 60.0%
!! AAAAGAGGCGCCCGTGGTTG+TGG - tig0029815:32467-32486 Msa1442220:intron 60.0%
GTGACATGCCTACGCAGTGG+TGG + tig0029815:33861-33880 None:intergenic 60.0%
GATGAGGAGGTCGAGGGTGG+CGG + tig0029815:26454-26473 None:intergenic 65.0%
GAGGATGAGGAGGTCGAGGG+TGG + tig0029815:26457-26476 None:intergenic 65.0%
GGAGGAGGATGAGGAGGTCG+AGG + tig0029815:26461-26480 None:intergenic 65.0%
CGCCGGAGAAGAGAACGAGG+AGG + tig0029815:26479-26498 None:intergenic 65.0%
ACGCGCCGGAGAAGAGAACG+AGG + tig0029815:26482-26501 None:intergenic 65.0%
GGAAGAGAGGAGGAACGCGC+CGG + tig0029815:26496-26515 None:intergenic 65.0%
TGTGCGCAGTCTGCAACGGC+AGG - tig0029815:27561-27580 Msa1442220:intron 65.0%
GTGCGCAGTCTGCAACGGCA+GGG - tig0029815:27562-27581 Msa1442220:intron 65.0%
TGTGCGCAGTCAGCAACGGC+AGG - tig0029815:28087-28106 Msa1442220:intron 65.0%
GTGCGCAGTCAGCAACGGCA+GGG - tig0029815:28088-28107 Msa1442220:intron 65.0%
GCGGGAACGTCACCTGCCTT+TGG - tig0029815:29871-29890 Msa1442220:intron 65.0%
! GAGCTGCGTGGTGGAGACGA+AGG - tig0029815:29966-29985 Msa1442220:intron 65.0%
!! GAGTTGCGAAGTGCCGACGG+CGG + tig0029815:30210-30229 None:intergenic 65.0%
!! GCGGAGTTGCGAAGTGCCGA+CGG + tig0029815:30213-30232 None:intergenic 65.0%
! GTCGACGTTGTGGTGGCGTG+CGG - tig0029815:30304-30323 Msa1442220:intron 65.0%
! TCGACGTTGTGGTGGCGTGC+GGG - tig0029815:30305-30324 Msa1442220:intron 65.0%
ACCACCGGTCATGCCAACGG+AGG + tig0029815:30335-30354 None:intergenic 65.0%
GGGCCACATTCCACGGCCTA+TGG - tig0029815:33355-33374 Msa1442220:intron 65.0%
!! GAGGTCGAGGGTGGCGGATG+GGG + tig0029815:26448-26467 None:intergenic 70.0%
!! GGAGGTCGAGGGTGGCGGAT+GGG + tig0029815:26449-26468 None:intergenic 70.0%
!! AGGAGGTCGAGGGTGGCGGA+TGG + tig0029815:26450-26469 None:intergenic 70.0%
! CGTTGTGGTGGCGTGCGGGA+AGG - tig0029815:30309-30328 Msa1442220:intron 70.0%
GCCTCCGTTGGCATGACCGG+TGG - tig0029815:30331-30350 Msa1442220:intron 70.0%
! GAGGCGCCCGTGGTTGTGGT+AGG - tig0029815:32471-32490 Msa1442220:intron 70.0%
GCGTGCGGGAAGGCCTCCGT+TGG - tig0029815:30319-30338 Msa1442220:intron 75.0%
Chromosome Type Strat End Strand Name
tig0029815 gene 26342 34127 26342 ID=Msa1442220;Name=Msa1442220
tig0029815 mRNA 26342 34127 26342 ID=Msa1442220-mRNA-1;Parent=Msa1442220;Name=Msa1442220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.33|0.66|0|0.33|3|271|230
tig0029815 exon 26342 26658 26342 ID=Msa1442220-mRNA-1:exon:13246;Parent=Msa1442220-mRNA-1
tig0029815 exon 30795 30860 30795 ID=Msa1442220-mRNA-1:exon:13245;Parent=Msa1442220-mRNA-1
tig0029815 exon 33547 34127 33547 ID=Msa1442220-mRNA-1:exon:13244;Parent=Msa1442220-mRNA-1
tig0029815 CDS 33547 34127 33547 ID=Msa1442220-mRNA-1:cds;Parent=Msa1442220-mRNA-1
tig0029815 CDS 30795 30860 30795 ID=Msa1442220-mRNA-1:cds;Parent=Msa1442220-mRNA-1
tig0029815 CDS 26613 26658 26613 ID=Msa1442220-mRNA-1:cds;Parent=Msa1442220-mRNA-1
tig0029815 three_prime_UTR 26342 26612 26342 ID=Msa1442220-mRNA-1:three_prime_utr;Parent=Msa1442220-mRNA-1
Gene Sequence

>Msa1442220

ATGCAAGAAGGCATTGTATTAACCACAGCAATGCCCTCTTCATCTTCATCTTCCTCTTCATCATTACGCCACCATTGCAACAATCTCTGCAACTGCAAACATGCCCCATCCGCCACCCTCGACCTCCTCATCCTCCTCCTCGTTCTCTTCTCCGGCGCGTTCCTCCTCTCTTCCTACATCCTCTACATCTTCAACTCCCTCTCTCTCCTCCTCCCTTCCTTCTCTCTCCCCATCCCTTACATCCTCGCATTCATCATCTTCTCCATCGGTTTCGTCTTCGGTTTTGAGATATGTTGCGGTGCTCGATCGAGGAAGTGTGAGCGGAAAGGGTGTAAAGGGTTGAAGAAAGCGACGGAGTTTGATTTGAAGATAGAGAGATTAGGGTTAGGGTTTGGTGAATATGAGAAACTTCCTTGGAAAGGTGGGAGTGAAGGGAATCCTGATTATGAGTGTTTGAGGTCTGAGTTAAGGAAAATGGCTCCTGTTAATGGGAAAGCTCTTTTGCTTTTTAGAGCTCCTTGTGGTTGTCCTGTTGCTAAGCTTGAAGCTTCTGGTCCTAAGAAAGGAAAGCGTCAGAAGAGTCTTGGAGAGAATCTTAAGAAACCTGTGAGGTTGTTCGTTACCTATTGCCAAATTGTGGAATTCAGGTCTACACCCAATGCAACTCTTAATGGAGGAGGAGATCATCGTTGA

Protein sequence

>Msa1442220

MQEGIVLTTAMPSSSSSSSSSLRHHCNNLCNCKHAPSATLDLLILLLVLFSGAFLLSSYILYIFNSLSLLLPSFSLPIPYILAFIIFSIGFVFGFEICCGARSRKCERKGCKGLKKATEFDLKIERLGLGFGEYEKLPWKGGSEGNPDYECLRSELRKMAPVNGKALLLFRAPCGCPVAKLEASGPKKGKRQKSLGENLKKPVRLFVTYCQIVEFRSTPNATLNGGGDHR*