Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003860 | sp|Q9FWR5|GCA1_ARATH | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.01e-175 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003860 | Msa0146410 | 0.881041 | 3.337631e-70 | -8.615850e-47 |
| Msa0003860 | Msa1043640 | 0.956409 | 3.160908e-114 | -8.615850e-47 |
| Msa0003860 | Msa1364330 | 0.801924 | 7.157079e-49 | -8.615850e-47 |
| Msa0003860 | Msa1374160 | 0.993914 | 3.670262e-203 | -8.615850e-47 |
| Msa0003860 | Msa1382660 | 0.990053 | 7.654991e-181 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003860 | MtrunA17_Chr1g0155361 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Msa0003860 | MtrunA17_Chr3g0141721 | 84.701 | 268 | 40 | 1 | 1 | 268 | 1 | 267 | 2.71e-171 | 474 |
| Msa0003860 | MtrunA17_Chr5g0404561 | 79.336 | 271 | 54 | 2 | 1 | 270 | 1 | 270 | 1.40e-159 | 444 |
| Msa0003860 | MtrunA17_Chr8g0386291 | 36.792 | 212 | 127 | 2 | 17 | 228 | 37 | 241 | 3.83e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003860 | AT1G19580.1 | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.05e-176 | 487 |
| Msa0003860 | AT1G47260.1 | 81.061 | 264 | 50 | 0 | 1 | 264 | 1 | 264 | 9.89e-167 | 462 |
| Msa0003860 | AT5G66510.1 | 74.340 | 265 | 59 | 3 | 1 | 265 | 1 | 256 | 4.92e-147 | 412 |
| Msa0003860 | AT5G66510.2 | 71.377 | 276 | 59 | 4 | 1 | 265 | 1 | 267 | 2.67e-143 | 403 |
| Msa0003860 | AT1G19580.2 | 88.827 | 179 | 20 | 0 | 1 | 179 | 1 | 179 | 7.84e-119 | 339 |
| Msa0003860 | AT5G63510.1 | 38.503 | 187 | 114 | 1 | 42 | 228 | 55 | 240 | 5.24e-41 | 142 |
| Msa0003860 | AT3G48680.1 | 37.968 | 187 | 115 | 1 | 42 | 228 | 59 | 244 | 1.95e-40 | 140 |
| Msa0003860 | AT5G63510.2 | 35.047 | 214 | 111 | 4 | 42 | 228 | 55 | 267 | 3.54e-35 | 127 |
| Msa0003860 | AT1G47420.1 | 51.163 | 86 | 29 | 1 | 1 | 86 | 1 | 73 | 1.40e-17 | 80.5 |
Find 122 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACATGTTTGTTATTAT+TGG | 0.144123 | 1_1:-6367316 | None:intergenic |
| CAATATACAGCGTTGGATTT+TGG | 0.184113 | 1_1:+6362444 | Msa0003860:CDS |
| TTCGAATTCTCCATCGAAAA+TGG | 0.194976 | 1_1:+6362406 | Msa0003860:exon |
| TTCGATGGAGAATTCGAATT+TGG | 0.210598 | 1_1:-6362401 | None:intergenic |
| TTCATTCGGGAGGTCAATTT+CGG | 0.252936 | 1_1:-6362246 | None:intergenic |
| TTACGTTCCAGATATTATTT+TGG | 0.270771 | 1_1:+6367479 | Msa0003860:three_prime_UTR |
| AAGGTGTTGCCTACTATTAT+TGG | 0.284723 | 1_1:+6364541 | Msa0003860:CDS |
| AGGTGTTGCCTACTATTATT+GGG | 0.302756 | 1_1:+6364542 | Msa0003860:CDS |
| TTATTTGTTGTGAATTGATT+TGG | 0.309682 | 1_1:-6367555 | None:intergenic |
| AAAGTGACTAACGCTGTTCT+TGG | 0.312952 | 1_1:-6362529 | None:intergenic |
| TGTTTAGGTAGGACATTATC+TGG | 0.316419 | 1_1:-6367171 | None:intergenic |
| GGGACATGTTTGTTATTATT+GGG | 0.318660 | 1_1:-6367315 | None:intergenic |
| TACTTTCCGCTTATTCATTC+GGG | 0.327530 | 1_1:-6362259 | None:intergenic |
| GTACTTTCCGCTTATTCATT+CGG | 0.332540 | 1_1:-6362260 | None:intergenic |
| AGCTTCCTCAAGAACTTTGC+CGG | 0.334411 | 1_1:-6366949 | None:intergenic |
| CTTTACGCGCAAACTTCTTT+CGG | 0.336036 | 1_1:-6367089 | None:intergenic |
| TATTTGTTGTGAATTGATTT+GGG | 0.360728 | 1_1:-6367554 | None:intergenic |
| TCATTCGGGAGGTCAATTTC+GGG | 0.376065 | 1_1:-6362245 | None:intergenic |
| CTGATGACCAAAATAATATC+TGG | 0.379939 | 1_1:-6367486 | None:intergenic |
| TCAAACTCAATTTCATCAAA+AGG | 0.380051 | 1_1:-6367057 | None:intergenic |
| GAATAGGTGAAGAAGGAAAA+TGG | 0.384580 | 1_1:-6362336 | None:intergenic |
| CGCCTCGGTTCTCGCCTTCA+AGG | 0.386977 | 1_1:+6362494 | Msa0003860:CDS |
| GTGGAAACCTTTGTTTGTTT+AGG | 0.399925 | 1_1:-6367186 | None:intergenic |
| GGATGAGGCATTTGTTGGTA+TGG | 0.402155 | 1_1:+6364699 | Msa0003860:CDS |
| TTTGATGAACATATTTGATA+AGG | 0.410702 | 1_1:+6364022 | Msa0003860:CDS |
| CTCAATTTCATCAAAAGGCT+TGG | 0.413672 | 1_1:-6367052 | None:intergenic |
| TACTGTAATTGATGGCTGAC+TGG | 0.414279 | 1_1:-6366999 | None:intergenic |
| TGGAAGTGGAACGAACATTC+AGG | 0.417411 | 1_1:+6364477 | Msa0003860:CDS |
| ATCCACATACACGATCCTTC+AGG | 0.420689 | 1_1:-6367394 | None:intergenic |
| GCAGGTTTGGGCAGGCAATC+CGG | 0.427230 | 1_1:+6366930 | Msa0003860:intron |
| CGCTGTATATTGCTCTTCCT+AGG | 0.432752 | 1_1:-6362433 | None:intergenic |
| CTATATTTGCAGGTTTGGGC+AGG | 0.438052 | 1_1:+6366922 | Msa0003860:intron |
| ATGAATAAGCGGAAAGTACT+AGG | 0.441855 | 1_1:+6362264 | Msa0003860:five_prime_UTR |
| ATATTGTGGAGCTATTGATC+TGG | 0.442749 | 1_1:-6367336 | None:intergenic |
| GGAAGTAGTAGTTTCCTTGA+AGG | 0.444566 | 1_1:-6362508 | None:intergenic |
| TTGGCAGAGGATCATCCATT+TGG | 0.451417 | 1_1:+6364108 | Msa0003860:CDS |
| TCACCGATGACGGAGGCACT+TGG | 0.455404 | 1_1:-6364077 | None:intergenic |
| TTTGTAGTTGCTATCTACTC+TGG | 0.459816 | 1_1:+6367358 | Msa0003860:three_prime_UTR |
| AATGCATCTTTATCAACAAC+GGG | 0.459975 | 1_1:-6364047 | None:intergenic |
| ACATTATCCCCAATAATAGT+AGG | 0.462118 | 1_1:-6364550 | None:intergenic |
| TCGAATTCTCCATCGAAAAT+GGG | 0.468600 | 1_1:+6362407 | Msa0003860:exon |
| CACCGATGACGGAGGCACTT+GGG | 0.479686 | 1_1:-6364076 | None:intergenic |
| GTTGAGGATGAGGCATTTGT+TGG | 0.479806 | 1_1:+6364694 | Msa0003860:CDS |
| GTTGCTATCTACTCTGGAAA+AGG | 0.484435 | 1_1:+6367364 | Msa0003860:three_prime_UTR |
| CATGACACATCCATACCAAA+TGG | 0.491582 | 1_1:-6364123 | None:intergenic |
| GCCCCAAGTGCCTCCGTCAT+CGG | 0.493477 | 1_1:+6364074 | Msa0003860:CDS |
| CGAGGAGTATGACTCAATGC+TGG | 0.495730 | 1_1:+6367113 | Msa0003860:CDS |
| CCCTTGTGAGACAGAATTCA+CGG | 0.497709 | 1_1:+6364779 | Msa0003860:CDS |
| CTTTATAATAAGATGAAAGG+TGG | 0.500506 | 1_1:+6367524 | Msa0003860:three_prime_UTR |
| GTTGCGAAGTCAAATTTAAG+TGG | 0.500521 | 1_1:+6364517 | Msa0003860:CDS |
| TTTGTTCAAATTCATGGAAG+AGG | 0.507441 | 1_1:+6367278 | Msa0003860:three_prime_UTR |
| CAGAATTCACGGATTCCATC+CGG | 0.507689 | 1_1:+6364790 | Msa0003860:CDS |
| TGCAAGGTTACTGTAATTGA+TGG | 0.508085 | 1_1:-6367007 | None:intergenic |
| TTATCTGGAAGAATGAGCTC+TGG | 0.510631 | 1_1:-6367156 | None:intergenic |
| TGGTATGGGTGCAACACTAC+TGG | 0.514205 | 1_1:+6364714 | Msa0003860:CDS |
| TCCACATACACGATCCTTCA+GGG | 0.517962 | 1_1:-6367393 | None:intergenic |
| ACCGATGACGGAGGCACTTG+GGG | 0.523236 | 1_1:-6364075 | None:intergenic |
| TTGTTCAAATTCATGGAAGA+GGG | 0.524350 | 1_1:+6367279 | Msa0003860:three_prime_UTR |
| GCGAGAACCGAGGCGATCAA+TGG | 0.526580 | 1_1:-6362486 | None:intergenic |
| AAATGGTGGTGGAAGGAAGA+AGG | 0.531780 | 1_1:-6362319 | None:intergenic |
| CATGTGAAACTCACATGCAT+TGG | 0.537464 | 1_1:-6367434 | None:intergenic |
| GGTCACAGTGCGGTCTTACA+TGG | 0.537571 | 1_1:+6364664 | Msa0003860:intron |
| GCTGTATATTGCTCTTCCTA+GGG | 0.544124 | 1_1:-6362432 | None:intergenic |
| TTGCTTTATAATAAGATGAA+AGG | 0.546529 | 1_1:+6367521 | Msa0003860:three_prime_UTR |
| CAGCTGCATGGACCTGTGCA+AGG | 0.546560 | 1_1:-6367023 | None:intergenic |
| TCCCTGAAGGATCGTGTATG+TGG | 0.547029 | 1_1:+6367392 | Msa0003860:three_prime_UTR |
| TATTGTGGAGCTATTGATCT+GGG | 0.547920 | 1_1:-6367335 | None:intergenic |
| CCATCGAAAATGGGAACCCT+AGG | 0.548387 | 1_1:+6362416 | Msa0003860:exon |
| AAACATGCCATGGTTGCTGC+TGG | 0.555478 | 1_1:+6364754 | Msa0003860:CDS |
| GATGAGGCATTTGTTGGTAT+GGG | 0.557130 | 1_1:+6364700 | Msa0003860:CDS |
| ATTGGGGATAATGTTACTGT+AGG | 0.557745 | 1_1:+6364559 | Msa0003860:CDS |
| GATAGCAACTACAAATATTG+TGG | 0.558085 | 1_1:-6367350 | None:intergenic |
| TTTATAATAAGATGAAAGGT+GGG | 0.558966 | 1_1:+6367525 | Msa0003860:three_prime_UTR |
| AAATGCATCTTTATCAACAA+CGG | 0.563384 | 1_1:-6364048 | None:intergenic |
| AGAGGATCATCCATTTGGTA+TGG | 0.566846 | 1_1:+6364113 | Msa0003860:CDS |
| TCTCTGTGGTGTGATGGAAT+AGG | 0.566944 | 1_1:-6362352 | None:intergenic |
| TACAAACATACCTCTCCGGA+TGG | 0.567919 | 1_1:-6364805 | None:intergenic |
| AGAATTTCTCTGTGGTGTGA+TGG | 0.568426 | 1_1:-6362358 | None:intergenic |
| CATGTACAAACATACCTCTC+CGG | 0.568549 | 1_1:-6364809 | None:intergenic |
| AACAACATCAGTGTTGGAAG+TGG | 0.575912 | 1_1:+6364463 | Msa0003860:CDS |
| AAACCTTTGTTTGTTTAGGT+AGG | 0.577011 | 1_1:-6367182 | None:intergenic |
| AGAAGGAAAATGGTGGTGGA+AGG | 0.577156 | 1_1:-6362326 | None:intergenic |
| GTGAAGAAGGAAAATGGTGG+TGG | 0.577182 | 1_1:-6362330 | None:intergenic |
| CTTACATGGTTGCACTGTTG+AGG | 0.578504 | 1_1:+6364678 | Msa0003860:CDS |
| GGAAGAGCAATATACAGCGT+TGG | 0.581089 | 1_1:+6362437 | Msa0003860:CDS |
| ACTGTAATTGATGGCTGACT+GGG | 0.582150 | 1_1:-6366998 | None:intergenic |
| GAACATTCAGGATAACTCCT+TGG | 0.585092 | 1_1:+6364489 | Msa0003860:CDS |
| TGGTTGCACTGTTGAGGATG+AGG | 0.587457 | 1_1:+6364684 | Msa0003860:CDS |
| AATGTGAACATCACCGATGA+CGG | 0.591114 | 1_1:-6364087 | None:intergenic |
| AAGGGCACCAGCAGCAACCA+TGG | 0.591319 | 1_1:-6364761 | None:intergenic |
| TCTGGAAGAATGAGCTCTGG+AGG | 0.591755 | 1_1:-6367153 | None:intergenic |
| TTGCGAAGTCAAATTTAAGT+GGG | 0.594604 | 1_1:+6364518 | Msa0003860:CDS |
| GCAATCCGGCAAAGTTCTTG+AGG | 0.596618 | 1_1:+6366944 | Msa0003860:CDS |
| GAAGTCAAATTTAAGTGGGA+AGG | 0.601013 | 1_1:+6364522 | Msa0003860:CDS |
| GGAAAAGGAAAGTTCCCTGA+AGG | 0.602605 | 1_1:+6367379 | Msa0003860:three_prime_UTR |
| TGTGATGGAATAGGTGAAGA+AGG | 0.604030 | 1_1:-6362343 | None:intergenic |
| GGTGATGTTCACATTGGCAG+AGG | 0.604788 | 1_1:+6364095 | Msa0003860:CDS |
| GAGGAGTATGACTCAATGCT+GGG | 0.608575 | 1_1:+6367114 | Msa0003860:CDS |
| TCTTTAAAGATCTCATTGTG+TGG | 0.610119 | 1_1:-6367205 | None:intergenic |
| GGACAAGCCATTGATCGCCT+CGG | 0.617682 | 1_1:+6362479 | Msa0003860:CDS |
| TTTCCGCTTATTCATTCGGG+AGG | 0.619619 | 1_1:-6362256 | None:intergenic |
| TCCGTGAATTCTGTCTCACA+AGG | 0.619899 | 1_1:-6364780 | None:intergenic |
| CAATTACAGTAACCTTGCAC+AGG | 0.620160 | 1_1:+6367011 | Msa0003860:CDS |
| TGTCCTACCTAAACAAACAA+AGG | 0.621913 | 1_1:+6367179 | Msa0003860:CDS |
| TGACCTCCCGAATGAATAAG+CGG | 0.623321 | 1_1:+6362253 | Msa0003860:five_prime_UTR |
| CTGGAAGAATGAGCTCTGGA+GGG | 0.626080 | 1_1:-6367152 | None:intergenic |
| TGATGAAATTGAGTTTGAGA+AGG | 0.626270 | 1_1:+6367062 | Msa0003860:CDS |
| GATGTGAACAACATCAGTGT+TGG | 0.633059 | 1_1:+6364457 | Msa0003860:CDS |
| GAAGTTTGCGCGTAAAGACG+AGG | 0.633888 | 1_1:+6367095 | Msa0003860:CDS |
| GGTGTTGCCTACTATTATTG+GGG | 0.645236 | 1_1:+6364543 | Msa0003860:CDS |
| GTCATCGGTGATGTTCACAT+TGG | 0.648843 | 1_1:+6364089 | Msa0003860:CDS |
| TTCCTTGAAGGCGAGAACCG+AGG | 0.652401 | 1_1:-6362496 | None:intergenic |
| TGTTGTTGAGAAACATGCCA+TGG | 0.655725 | 1_1:+6364744 | Msa0003860:CDS |
| TTCACGGATTCCATCCGGAG+AGG | 0.692353 | 1_1:+6364795 | Msa0003860:CDS |
| ATGGGTGCAACACTACTGGA+TGG | 0.693665 | 1_1:+6364718 | Msa0003860:CDS |
| TGACTTCGCAACGTGCACCA+AGG | 0.699119 | 1_1:-6364506 | None:intergenic |
| GTGAACATCACCGATGACGG+AGG | 0.701387 | 1_1:-6364084 | None:intergenic |
| TGGTATGGATGTGTCATGAG+AGG | 0.706530 | 1_1:+6364128 | Msa0003860:CDS |
| CCGTGAATTCTGTCTCACAA+GGG | 0.725853 | 1_1:-6364779 | None:intergenic |
| GATTCAGAAGAATTTCTCTG+TGG | 0.740529 | 1_1:-6362366 | None:intergenic |
| GCACTGGGCAGGTCACAGTG+CGG | 0.741494 | 1_1:+6364654 | Msa0003860:intron |
| TAGGTGAAGAAGGAAAATGG+TGG | 0.746528 | 1_1:-6362333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTTTATTTTTTTTG+GGG | + | chr1_1:6362972-6362991 | Msa0003860:intron | 10.0% |
| !!! | TTATTTTTTTTGAATGTTTT+TGG | - | chr1_1:6364293-6364312 | None:intergenic | 10.0% |
| !! | TGATAATCATATTAAAATGT+TGG | + | chr1_1:6362633-6362652 | Msa0003860:intron | 15.0% |
| !! | ATTTAACATTATACAAAACA+GGG | - | chr1_1:6362954-6362973 | None:intergenic | 15.0% |
| !!! | TCATTTTTTATTTTTTTTGG+GGG | + | chr1_1:6362973-6362992 | Msa0003860:intron | 15.0% |
| !!! | TTCTTTTAAAAATAGTTTGT+AGG | + | chr1_1:6363311-6363330 | Msa0003860:intron | 15.0% |
| !!! | TTGATATGTTTTAATTTTCA+TGG | - | chr1_1:6363960-6363979 | None:intergenic | 15.0% |
| !! | AATATAATTTCAACAATACT+CGG | + | chr1_1:6365121-6365140 | Msa0003860:intron | 15.0% |
| !! | ATATTATACATCCAAAATAA+AGG | - | chr1_1:6365225-6365244 | None:intergenic | 15.0% |
| !!! | AAATCGATTTATTTGAATTT+TGG | + | chr1_1:6365302-6365321 | Msa0003860:intron | 15.0% |
| !!! | AAACTTTAAGAATTTTAGAA+GGG | - | chr1_1:6365516-6365535 | None:intergenic | 15.0% |
| !! | TTAAAGTTTCTAAGTATATT+TGG | + | chr1_1:6365527-6365546 | Msa0003860:intron | 15.0% |
| !! | AATCTAATTTAACCATAATA+TGG | - | chr1_1:6365559-6365578 | None:intergenic | 15.0% |
| !! | CATAAATAAAAACAGATTAG+AGG | - | chr1_1:6362615-6362634 | None:intergenic | 20.0% |
| !! | GGAAAATGATTGAAATAAAT+GGG | + | chr1_1:6362819-6362838 | Msa0003860:intron | 20.0% |
| !! | GATTTAACATTATACAAAAC+AGG | - | chr1_1:6362955-6362974 | None:intergenic | 20.0% |
| !!! | ATAAATCTTTTTGTCAAACA+TGG | - | chr1_1:6363063-6363082 | None:intergenic | 20.0% |
| !! | ATGTTTGACAAAAAGATTTA+TGG | + | chr1_1:6363062-6363081 | Msa0003860:intron | 20.0% |
| !!! | TAAAAATAGTTTGTAGGTTT+AGG | + | chr1_1:6363317-6363336 | Msa0003860:intron | 20.0% |
| !!! | ATCTTTCAAGTTGTTAATAT+TGG | - | chr1_1:6363391-6363410 | None:intergenic | 20.0% |
| !! | ATAACTCTATATCATTTAAC+TGG | + | chr1_1:6363888-6363907 | Msa0003860:intron | 20.0% |
| !! | TTTGATGAACATATTTGATA+AGG | + | chr1_1:6364022-6364041 | Msa0003860:CDS | 20.0% |
| !!! | ATATCACATTTTTCCTTTAA+CGG | + | chr1_1:6364619-6364638 | Msa0003860:intron | 20.0% |
| !! | AATTACAATTTCAAAGATCT+AGG | + | chr1_1:6364877-6364896 | Msa0003860:intron | 20.0% |
| !! | TGATTTATTTACATAGCTTT+AGG | + | chr1_1:6364929-6364948 | Msa0003860:intron | 20.0% |
| !! | CTAACTCATATTATATTGTA+TGG | - | chr1_1:6364976-6364995 | None:intergenic | 20.0% |
| !! | CATACAATATAATATGAGTT+AGG | + | chr1_1:6364974-6364993 | Msa0003860:intron | 20.0% |
| !!! | ATCTTTCCAGTATTATATTT+TGG | + | chr1_1:6365016-6365035 | Msa0003860:intron | 20.0% |
| !!! | ATACTTTTTTATGGAGTATT+TGG | - | chr1_1:6365086-6365105 | None:intergenic | 20.0% |
| !!! | AATTTGGGAATACTTTTTTA+TGG | - | chr1_1:6365095-6365114 | None:intergenic | 20.0% |
| !!! | GGTTTCTAAAAGTATTAATT+GGG | - | chr1_1:6365204-6365223 | None:intergenic | 20.0% |
| !!! | AGGTTTCTAAAAGTATTAAT+TGG | - | chr1_1:6365205-6365224 | None:intergenic | 20.0% |
| !!! | ACTTTTAGAAACCTTTATTT+TGG | + | chr1_1:6365211-6365230 | Msa0003860:intron | 20.0% |
| !! | TCTACAATAAAGATATAAAC+AGG | + | chr1_1:6365390-6365409 | Msa0003860:intron | 20.0% |
| !! | TATTGAGTATGAATCTTATA+AGG | - | chr1_1:6365467-6365486 | None:intergenic | 20.0% |
| !!! | GAAACTTTAAGAATTTTAGA+AGG | - | chr1_1:6365517-6365536 | None:intergenic | 20.0% |
| !! | ATTTGGAAATTACCATATTA+TGG | + | chr1_1:6365544-6365563 | Msa0003860:intron | 20.0% |
| !! | TTAGATTGAAAACCTTTAAA+TGG | + | chr1_1:6365572-6365591 | Msa0003860:intron | 20.0% |
| !! | ATCTAGAAATTATCATACTA+TGG | + | chr1_1:6366001-6366020 | Msa0003860:intron | 20.0% |
| !! | TTGCTTTATAATAAGATGAA+AGG | + | chr1_1:6367521-6367540 | Msa0003860:three_prime_UTR | 20.0% |
| !! | TTTATAATAAGATGAAAGGT+GGG | + | chr1_1:6367525-6367544 | Msa0003860:three_prime_UTR | 20.0% |
| !!! | TATTTGTTGTGAATTGATTT+GGG | - | chr1_1:6367557-6367576 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTGAATTGATT+TGG | - | chr1_1:6367558-6367577 | None:intergenic | 20.0% |
| !! | AGTACTTGTGTTTTATGTAT+TGG | + | chr1_1:6362688-6362707 | Msa0003860:intron | 25.0% |
| ! | GGGAAAATGATTGAAATAAA+TGG | + | chr1_1:6362818-6362837 | Msa0003860:intron | 25.0% |
| ! | GAAACAACATATTAAGATTC+TGG | + | chr1_1:6362873-6362892 | Msa0003860:intron | 25.0% |
| !! | TTTTTCTACCATAAAGAGAA+TGG | - | chr1_1:6363012-6363031 | None:intergenic | 25.0% |
| ! | TTGACAAAAAGATTTATGGT+TGG | + | chr1_1:6363066-6363085 | Msa0003860:intron | 25.0% |
| ! | GATACAATTGTGATATGAAA+TGG | + | chr1_1:6363128-6363147 | Msa0003860:intron | 25.0% |
| !! | GAATAGAGAAAATGATTTGT+TGG | + | chr1_1:6363444-6363463 | Msa0003860:intron | 25.0% |
| !! | ATTTGTTGGTATTGAAACTT+GGG | + | chr1_1:6363458-6363477 | Msa0003860:intron | 25.0% |
| ! | TTATTCTTGTGTAGAAAGTA+AGG | + | chr1_1:6363506-6363525 | Msa0003860:intron | 25.0% |
| ! | AGTTGAATGTTTGAATGAAA+GGG | + | chr1_1:6363529-6363548 | Msa0003860:intron | 25.0% |
| ! | TAGTCATGTATGAAATTGTT+TGG | + | chr1_1:6363761-6363780 | Msa0003860:intron | 25.0% |
| ! | CACTAAAAACAATAACAAAG+AGG | - | chr1_1:6363988-6364007 | None:intergenic | 25.0% |
| !!! | TGTTATTGTTTTTAGTGTCT+AGG | + | chr1_1:6363991-6364010 | Msa0003860:intron | 25.0% |
| ! | AAATGCATCTTTATCAACAA+CGG | - | chr1_1:6364051-6364070 | None:intergenic | 25.0% |
| ! | AAGTATTCCATGAATAAATC+TGG | - | chr1_1:6364230-6364249 | None:intergenic | 25.0% |
| !! | AAGACATTTTCTTTAACTAC+TGG | + | chr1_1:6364254-6364273 | Msa0003860:intron | 25.0% |
| !! | AGACATTTTCTTTAACTACT+GGG | + | chr1_1:6364255-6364274 | Msa0003860:intron | 25.0% |
| !!! | TTTGAATGTTTTTGGAATCA+GGG | - | chr1_1:6364285-6364304 | None:intergenic | 25.0% |
| !!! | TTTTGAATGTTTTTGGAATC+AGG | - | chr1_1:6364286-6364305 | None:intergenic | 25.0% |
| ! | CAGAGAAATAAACTTTGTAT+TGG | - | chr1_1:6364324-6364343 | None:intergenic | 25.0% |
| !!! | TAATATTTTGGCATTGATCA+TGG | + | chr1_1:6364594-6364613 | Msa0003860:intron | 25.0% |
| !! | TATCACATTTTTCCTTTAAC+GGG | + | chr1_1:6364620-6364639 | Msa0003860:intron | 25.0% |
| ! | AATTTCAAAGATCTAGGTAA+AGG | + | chr1_1:6364883-6364902 | Msa0003860:intron | 25.0% |
| ! | GTAAAGGAGTGAAATATAAT+TGG | + | chr1_1:6364899-6364918 | Msa0003860:intron | 25.0% |
| !!! | TAGCTTTAGGATAATTTTGT+TGG | + | chr1_1:6364942-6364961 | Msa0003860:intron | 25.0% |
| ! | AAGAAGCCAAAATATAATAC+TGG | - | chr1_1:6365025-6365044 | None:intergenic | 25.0% |
| !!! | TATTTGAATTTTGGCATACA+TGG | + | chr1_1:6365311-6365330 | Msa0003860:intron | 25.0% |
| ! | TATCACATGATACAAATCAA+TGG | + | chr1_1:6365346-6365365 | Msa0003860:intron | 25.0% |
| ! | ATACGTGATATACTTACTAT+GGG | - | chr1_1:6365428-6365447 | None:intergenic | 25.0% |
| ! | ATTTACAAGAGTCCATTTAA+AGG | - | chr1_1:6365587-6365606 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTAATATG+CGG | + | chr1_1:6365637-6365656 | Msa0003860:intron | 25.0% |
| ! | ATTAGTGTTCTTCATTGAAA+AGG | + | chr1_1:6365666-6365685 | Msa0003860:intron | 25.0% |
| !! | AAAAAACCGTCTTTGAAAAA+TGG | + | chr1_1:6365698-6365717 | Msa0003860:intron | 25.0% |
| ! | AATGGTATGTGAAACAAAAT+AGG | + | chr1_1:6365716-6365735 | Msa0003860:intron | 25.0% |
| !!! | TTATGTGACTTTGGTTTTAA+TGG | + | chr1_1:6365809-6365828 | Msa0003860:intron | 25.0% |
| ! | TTTATCTCCTATTGTATACT+TGG | - | chr1_1:6365885-6365904 | None:intergenic | 25.0% |
| ! | TTACATCGAAAACATATAAC+TGG | + | chr1_1:6366028-6366047 | Msa0003860:intron | 25.0% |
| !!! | TGCTCTAAATTTTACATCTA+TGG | - | chr1_1:6366054-6366073 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTATTAAG+TGG | + | chr1_1:6366105-6366124 | Msa0003860:intron | 25.0% |
| ! | AGATGTTATCCTTATTAAGT+GGG | + | chr1_1:6366106-6366125 | Msa0003860:intron | 25.0% |
| ! | TTAATATAACCGAATGTTGA+TGG | + | chr1_1:6366420-6366439 | Msa0003860:intron | 25.0% |
| !! | AATCTCATCTTATTTCAGTT+CGG | - | chr1_1:6366604-6366623 | None:intergenic | 25.0% |
| ! | TCAAACTCAATTTCATCAAA+AGG | - | chr1_1:6367060-6367079 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTGTTCAAATTCA+TGG | + | chr1_1:6367272-6367291 | Msa0003860:three_prime_UTR | 25.0% |
| !! | TTACGTTCCAGATATTATTT+TGG | + | chr1_1:6367479-6367498 | Msa0003860:three_prime_UTR | 25.0% |
| ! | CTTTATAATAAGATGAAAGG+TGG | + | chr1_1:6367524-6367543 | Msa0003860:three_prime_UTR | 25.0% |
| ACATAGAGAAACGGTAATTA+CGG | - | chr1_1:6362580-6362599 | None:intergenic | 30.0% | |
| GATCTTAAGACATAGAGAAA+CGG | - | chr1_1:6362589-6362608 | None:intergenic | 30.0% | |
| ! | GAATTAGTAGAAGCATATAG+TGG | + | chr1_1:6362841-6362860 | Msa0003860:intron | 30.0% |
| TTGAGTTTCCATTCTCTTTA+TGG | + | chr1_1:6363001-6363020 | Msa0003860:intron | 30.0% | |
| ! | TGGCTTTTCTTCAAAAACAT+AGG | + | chr1_1:6363148-6363167 | Msa0003860:intron | 30.0% |
| GAAAAAGTCATGCTTTCATA+TGG | + | chr1_1:6363411-6363430 | Msa0003860:intron | 30.0% | |
| !! | GATTTGTTGGTATTGAAACT+TGG | + | chr1_1:6363457-6363476 | Msa0003860:intron | 30.0% |
| GAGTTGAATGTTTGAATGAA+AGG | + | chr1_1:6363528-6363547 | Msa0003860:intron | 30.0% | |
| TCATACAGTTGAAACACTTA+AGG | - | chr1_1:6363586-6363605 | None:intergenic | 30.0% | |
| !!! | TCTTCAATCTTTTTTCTCAC+AGG | + | chr1_1:6363619-6363638 | Msa0003860:intron | 30.0% |
| AAAAACATCCTCAACAAAGA+AGG | - | chr1_1:6363682-6363701 | None:intergenic | 30.0% | |
| !! | TTTGTTGAGGATGTTTTTGT+TGG | + | chr1_1:6363684-6363703 | Msa0003860:intron | 30.0% |
| !! | TTGTTGAGGATGTTTTTGTT+GGG | + | chr1_1:6363685-6363704 | Msa0003860:intron | 30.0% |
| ! | TGATGCATTTGGAATTGAAA+TGG | + | chr1_1:6363730-6363749 | Msa0003860:intron | 30.0% |
| ACTCTATATCATTTAACTGG+TGG | + | chr1_1:6363891-6363910 | Msa0003860:intron | 30.0% | |
| TCATTTAACTGGTGGAAAAA+TGG | + | chr1_1:6363899-6363918 | Msa0003860:intron | 30.0% | |
| TGGTGGAAAAATGGTTTAAT+GGG | + | chr1_1:6363908-6363927 | Msa0003860:intron | 30.0% | |
| AATGCATCTTTATCAACAAC+GGG | - | chr1_1:6364050-6364069 | None:intergenic | 30.0% | |
| CCAAAAGTTTAATGCCTAAT+TGG | - | chr1_1:6364171-6364190 | None:intergenic | 30.0% | |
| ! | CCAATTAGGCATTAAACTTT+TGG | + | chr1_1:6364168-6364187 | Msa0003860:intron | 30.0% |
| ! | TTAGGCATTAAACTTTTGGT+TGG | + | chr1_1:6364172-6364191 | Msa0003860:intron | 30.0% |
| !!! | CTTTTGGTTGGTTTATCATT+TGG | + | chr1_1:6364184-6364203 | Msa0003860:intron | 30.0% |
| TGAGTAACCAGATTTATTCA+TGG | + | chr1_1:6364220-6364239 | Msa0003860:intron | 30.0% | |
| ! | GACATTTTCTTTAACTACTG+GGG | + | chr1_1:6364256-6364275 | Msa0003860:intron | 30.0% |
| ! | TTATCACAGTCTCTATTTTG+TGG | + | chr1_1:6364391-6364410 | Msa0003860:intron | 30.0% |
| TCAAACTTCACTTTATGCTT+AGG | + | chr1_1:6364433-6364452 | Msa0003860:intron | 30.0% | |
| TTGCGAAGTCAAATTTAAGT+GGG | + | chr1_1:6364518-6364537 | Msa0003860:CDS | 30.0% | |
| ACATTATCCCCAATAATAGT+AGG | - | chr1_1:6364553-6364572 | None:intergenic | 30.0% | |
| ! | TGAGTCTGTGAGTAATATTT+TGG | + | chr1_1:6364582-6364601 | Msa0003860:intron | 30.0% |
| !! | CAAATTTTAACACCCGTTAA+AGG | - | chr1_1:6364635-6364654 | None:intergenic | 30.0% |
| CATACGTGATATACTTACTA+TGG | - | chr1_1:6365429-6365448 | None:intergenic | 30.0% | |
| AGATGTTATCCTTAATATGC+GGG | + | chr1_1:6365638-6365657 | Msa0003860:intron | 30.0% | |
| TAATTTATGCCCGCATATTA+AGG | - | chr1_1:6365650-6365669 | None:intergenic | 30.0% | |
| !! | CACATACCATTTTTCAAAGA+CGG | - | chr1_1:6365707-6365726 | None:intergenic | 30.0% |
| !!! | AGTTTTAACTGTAGAGAAGA+TGG | + | chr1_1:6365774-6365793 | Msa0003860:intron | 30.0% |
| AATGTCATCTTATGTGACTT+TGG | + | chr1_1:6365800-6365819 | Msa0003860:intron | 30.0% | |
| TTATCCTTATTAAGTGGGAA+TGG | + | chr1_1:6366111-6366130 | Msa0003860:intron | 30.0% | |
| AAAACCATTCCCACTTAATA+AGG | - | chr1_1:6366118-6366137 | None:intergenic | 30.0% | |
| ! | GCATACAATTTTGCAAAGAT+GGG | - | chr1_1:6366172-6366191 | None:intergenic | 30.0% |
| ACCAATTCGATAAAAATCTG+AGG | + | chr1_1:6366222-6366241 | Msa0003860:intron | 30.0% | |
| ! | ACCTCAGATTTTTATCGAAT+TGG | - | chr1_1:6366226-6366245 | None:intergenic | 30.0% |
| TGGTTGAATCTTATTCGATT+TGG | + | chr1_1:6366266-6366285 | Msa0003860:intron | 30.0% | |
| CTTCTTCCTATTGTATACTT+GGG | - | chr1_1:6366350-6366369 | None:intergenic | 30.0% | |
| ACTTCTTCCTATTGTATACT+TGG | - | chr1_1:6366351-6366370 | None:intergenic | 30.0% | |
| AGTGGGAACAATAAAGAATA+GGG | + | chr1_1:6366380-6366399 | Msa0003860:intron | 30.0% | |
| TTAACAGAACATGTGAGAAA+TGG | + | chr1_1:6366475-6366494 | Msa0003860:intron | 30.0% | |
| TAACAGAACATGTGAGAAAT+GGG | + | chr1_1:6366476-6366495 | Msa0003860:intron | 30.0% | |
| ATAAAGGAGTCCATTATGTT+TGG | + | chr1_1:6366502-6366521 | Msa0003860:intron | 30.0% | |
| TAAAGGAGTCCATTATGTTT+GGG | + | chr1_1:6366503-6366522 | Msa0003860:intron | 30.0% | |
| ! | TAAGCTTTTCCCAAACATAA+TGG | - | chr1_1:6366515-6366534 | None:intergenic | 30.0% |
| ATTATGTTTGGGAAAAGCTT+AGG | + | chr1_1:6366514-6366533 | Msa0003860:intron | 30.0% | |
| TATTTCAGTTCGGATAATTG+AGG | - | chr1_1:6366594-6366613 | None:intergenic | 30.0% | |
| TAGCTATAGGACTATTTGTT+AGG | - | chr1_1:6366639-6366658 | None:intergenic | 30.0% | |
| ACAAATAGTCCTATAGCTAA+AGG | + | chr1_1:6366640-6366659 | Msa0003860:intron | 30.0% | |
| GAGTACATGATATGAAGTTA+TGG | + | chr1_1:6366699-6366718 | Msa0003860:intron | 30.0% | |
| ! | TGCAAATATAGGCAATTTTG+TGG | - | chr1_1:6366913-6366932 | None:intergenic | 30.0% |
| ACAAAATTGCCTATATTTGC+AGG | + | chr1_1:6366912-6366931 | Msa0003860:intron | 30.0% | |
| TGATGAAATTGAGTTTGAGA+AGG | + | chr1_1:6367062-6367081 | Msa0003860:CDS | 30.0% | |
| ! | AAACCTTTGTTTGTTTAGGT+AGG | - | chr1_1:6367185-6367204 | None:intergenic | 30.0% |
| ! | TCTTTAAAGATCTCATTGTG+TGG | - | chr1_1:6367208-6367227 | None:intergenic | 30.0% |
| TTTGTTCAAATTCATGGAAG+AGG | + | chr1_1:6367278-6367297 | Msa0003860:three_prime_UTR | 30.0% | |
| TTGTTCAAATTCATGGAAGA+GGG | + | chr1_1:6367279-6367298 | Msa0003860:three_prime_UTR | 30.0% | |
| !! | GGGACATGTTTGTTATTATT+GGG | - | chr1_1:6367318-6367337 | None:intergenic | 30.0% |
| !! | TGGGACATGTTTGTTATTAT+TGG | - | chr1_1:6367319-6367338 | None:intergenic | 30.0% |
| GATAGCAACTACAAATATTG+TGG | - | chr1_1:6367353-6367372 | None:intergenic | 30.0% | |
| CTGATGACCAAAATAATATC+TGG | - | chr1_1:6367489-6367508 | None:intergenic | 30.0% | |
| TACTTTCCGCTTATTCATTC+GGG | - | chr1_1:6362262-6362281 | None:intergenic | 35.0% | |
| GTACTTTCCGCTTATTCATT+CGG | - | chr1_1:6362263-6362282 | None:intergenic | 35.0% | |
| !! | ATGAATAAGCGGAAAGTACT+AGG | + | chr1_1:6362264-6362283 | Msa0003860:five_prime_UTR | 35.0% |
| GAATAGGTGAAGAAGGAAAA+TGG | - | chr1_1:6362339-6362358 | None:intergenic | 35.0% | |
| GATTCAGAAGAATTTCTCTG+TGG | - | chr1_1:6362369-6362388 | None:intergenic | 35.0% | |
| TTCGATGGAGAATTCGAATT+TGG | - | chr1_1:6362404-6362423 | None:intergenic | 35.0% | |
| TTCGAATTCTCCATCGAAAA+TGG | + | chr1_1:6362406-6362425 | Msa0003860:exon | 35.0% | |
| TCGAATTCTCCATCGAAAAT+GGG | + | chr1_1:6362407-6362426 | Msa0003860:exon | 35.0% | |
| !! | CAATATACAGCGTTGGATTT+TGG | + | chr1_1:6362444-6362463 | Msa0003860:CDS | 35.0% |
| GAAACGGTAATTACGGAAAA+TGG | - | chr1_1:6362573-6362592 | None:intergenic | 35.0% | |
| AGTTTATGATTGCAGTGTAG+TGG | + | chr1_1:6362797-6362816 | Msa0003860:intron | 35.0% | |
| GTTTATGATTGCAGTGTAGT+GGG | + | chr1_1:6362798-6362817 | Msa0003860:intron | 35.0% | |
| GGAGAATTTATGTAAGATCG+TGG | + | chr1_1:6362894-6362913 | Msa0003860:intron | 35.0% | |
| TGGTATAGTTGAAACTCCTA+GGG | + | chr1_1:6362914-6362933 | Msa0003860:intron | 35.0% | |
| ! | AAAAACTGTGTTGTTGAGCT+TGG | + | chr1_1:6363027-6363046 | Msa0003860:intron | 35.0% |
| AAAGATTTATGGTTGGAGAG+TGG | + | chr1_1:6363073-6363092 | Msa0003860:intron | 35.0% | |
| TTTGTAGGTTTAGGTCTGAT+TGG | + | chr1_1:6363326-6363345 | Msa0003860:intron | 35.0% | |
| CATGCTTTCATATGGACTTT+AGG | + | chr1_1:6363419-6363438 | Msa0003860:intron | 35.0% | |
| AAGTAGTTCCTTCTTTGTTG+AGG | + | chr1_1:6363671-6363690 | Msa0003860:intron | 35.0% | |
| !! | GTAGTGTTGATTGATGCATT+TGG | + | chr1_1:6363719-6363738 | Msa0003860:intron | 35.0% |
| TGTTTGGTCATTATCTTGCT+AGG | + | chr1_1:6363777-6363796 | Msa0003860:intron | 35.0% | |
| CTGGTGGAAAAATGGTTTAA+TGG | + | chr1_1:6363907-6363926 | Msa0003860:intron | 35.0% | |
| GCTCTTTCACTTTACCAATT+AGG | + | chr1_1:6364154-6364173 | Msa0003860:intron | 35.0% | |
| GTTGCGAAGTCAAATTTAAG+TGG | + | chr1_1:6364517-6364536 | Msa0003860:CDS | 35.0% | |
| GAAGTCAAATTTAAGTGGGA+AGG | + | chr1_1:6364522-6364541 | Msa0003860:CDS | 35.0% | |
| !! | AAGGTGTTGCCTACTATTAT+TGG | + | chr1_1:6364541-6364560 | Msa0003860:CDS | 35.0% |
| ! | AGGTGTTGCCTACTATTATT+GGG | + | chr1_1:6364542-6364561 | Msa0003860:CDS | 35.0% |
| ATTGGGGATAATGTTACTGT+AGG | + | chr1_1:6364559-6364578 | Msa0003860:CDS | 35.0% | |
| AGGTATGTTTGTACATGTTC+AGG | + | chr1_1:6364815-6364834 | Msa0003860:intron | 35.0% | |
| ! | CTTGTAAATTTAGAGCTTCG+TGG | + | chr1_1:6365598-6365617 | Msa0003860:intron | 35.0% |
| ! | TAAATTTAGAGCTTCGTGGA+CGG | + | chr1_1:6365602-6365621 | Msa0003860:intron | 35.0% |
| AAACATTCGAGAGAGAATTG+AGG | + | chr1_1:6365750-6365769 | Msa0003860:intron | 35.0% | |
| CACTAGTACAAGATAGTGTT+GGG | + | chr1_1:6365848-6365867 | Msa0003860:intron | 35.0% | |
| ! | CGCATACAATTTTGCAAAGA+TGG | - | chr1_1:6366173-6366192 | None:intergenic | 35.0% |
| AATTGTATGCGAGACAAAAC+AGG | + | chr1_1:6366182-6366201 | Msa0003860:intron | 35.0% | |
| ! | TCTAACATTTTCCTCCTTAC+GGG | - | chr1_1:6366317-6366336 | None:intergenic | 35.0% |
| ! | GTCTAACATTTTCCTCCTTA+CGG | - | chr1_1:6366318-6366337 | None:intergenic | 35.0% |
| CTATTGTATACTTGGGTAAC+TGG | - | chr1_1:6366343-6366362 | None:intergenic | 35.0% | |
| CAGTTACCCAAGTATACAAT+AGG | + | chr1_1:6366341-6366360 | Msa0003860:intron | 35.0% | |
| GAGTGGGAACAATAAAGAAT+AGG | + | chr1_1:6366379-6366398 | Msa0003860:intron | 35.0% | |
| TGTGAGAAATGGGAAGATAA+AGG | + | chr1_1:6366486-6366505 | Msa0003860:intron | 35.0% | |
| TATTCTTTAATTCCTCGCAC+TGG | + | chr1_1:6366561-6366580 | Msa0003860:intron | 35.0% | |
| !! | GGTATGTGATTGTTGTTTGT+GGG | + | chr1_1:6366765-6366784 | Msa0003860:intron | 35.0% |
| ATTGCCTATATTTGCAGGTT+TGG | + | chr1_1:6366917-6366936 | Msa0003860:intron | 35.0% | |
| TTGCCTATATTTGCAGGTTT+GGG | + | chr1_1:6366918-6366937 | Msa0003860:intron | 35.0% | |
| TGCAAGGTTACTGTAATTGA+TGG | - | chr1_1:6367010-6367029 | None:intergenic | 35.0% | |
| CTCAATTTCATCAAAAGGCT+TGG | - | chr1_1:6367055-6367074 | None:intergenic | 35.0% | |
| TGTTTAGGTAGGACATTATC+TGG | - | chr1_1:6367174-6367193 | None:intergenic | 35.0% | |
| TGTCCTACCTAAACAAACAA+AGG | + | chr1_1:6367179-6367198 | Msa0003860:CDS | 35.0% | |
| ! | GTGGAAACCTTTGTTTGTTT+AGG | - | chr1_1:6367189-6367208 | None:intergenic | 35.0% |
| TATTGTGGAGCTATTGATCT+GGG | - | chr1_1:6367338-6367357 | None:intergenic | 35.0% | |
| ATATTGTGGAGCTATTGATC+TGG | - | chr1_1:6367339-6367358 | None:intergenic | 35.0% | |
| TTTGTAGTTGCTATCTACTC+TGG | + | chr1_1:6367358-6367377 | Msa0003860:three_prime_UTR | 35.0% | |
| TAGGTGAAGAAGGAAAATGG+TGG | - | chr1_1:6362336-6362355 | None:intergenic | 40.0% | |
| ! | TGTGATGGAATAGGTGAAGA+AGG | - | chr1_1:6362346-6362365 | None:intergenic | 40.0% |
| AGAATTTCTCTGTGGTGTGA+TGG | - | chr1_1:6362361-6362380 | None:intergenic | 40.0% | |
| GCTGTATATTGCTCTTCCTA+GGG | - | chr1_1:6362435-6362454 | None:intergenic | 40.0% | |
| ! | GGATTTTGGATTCGAGAAAC+TGG | + | chr1_1:6362458-6362477 | Msa0003860:CDS | 40.0% |
| GGAAGTAGTAGTTTCCTTGA+AGG | - | chr1_1:6362511-6362530 | None:intergenic | 40.0% | |
| AAAGTGACTAACGCTGTTCT+TGG | - | chr1_1:6362532-6362551 | None:intergenic | 40.0% | |
| TTGGAAGCTCAGCGAAATAA+TGG | + | chr1_1:6362707-6362726 | Msa0003860:intron | 40.0% | |
| TGGAAGCTCAGCGAAATAAT+GGG | + | chr1_1:6362708-6362727 | Msa0003860:intron | 40.0% | |
| GTGGTATAGTTGAAACTCCT+AGG | + | chr1_1:6362913-6362932 | Msa0003860:intron | 40.0% | |
| ! | TGTGTTGTTGAGCTTGGTAT+TGG | + | chr1_1:6363033-6363052 | Msa0003860:intron | 40.0% |
| AATGTGAACATCACCGATGA+CGG | - | chr1_1:6364090-6364109 | None:intergenic | 40.0% | |
| AGAGGATCATCCATTTGGTA+TGG | + | chr1_1:6364113-6364132 | Msa0003860:CDS | 40.0% | |
| CATGACACATCCATACCAAA+TGG | - | chr1_1:6364126-6364145 | None:intergenic | 40.0% | |
| GATGTGAACAACATCAGTGT+TGG | + | chr1_1:6364457-6364476 | Msa0003860:CDS | 40.0% | |
| ! | AACAACATCAGTGTTGGAAG+TGG | + | chr1_1:6364463-6364482 | Msa0003860:CDS | 40.0% |
| GAACATTCAGGATAACTCCT+TGG | + | chr1_1:6364489-6364508 | Msa0003860:CDS | 40.0% | |
| ! | GGTGTTGCCTACTATTATTG+GGG | + | chr1_1:6364543-6364562 | Msa0003860:CDS | 40.0% |
| ACGGGTGTTAAAATTTGCAC+TGG | + | chr1_1:6364638-6364657 | Msa0003860:intron | 40.0% | |
| CGGGTGTTAAAATTTGCACT+GGG | + | chr1_1:6364639-6364658 | Msa0003860:intron | 40.0% | |
| TGTTAAAATTTGCACTGGGC+AGG | + | chr1_1:6364643-6364662 | Msa0003860:intron | 40.0% | |
| ! | GATGAGGCATTTGTTGGTAT+GGG | + | chr1_1:6364700-6364719 | Msa0003860:CDS | 40.0% |
| TGTTGTTGAGAAACATGCCA+TGG | + | chr1_1:6364744-6364763 | Msa0003860:CDS | 40.0% | |
| CATGTACAAACATACCTCTC+CGG | - | chr1_1:6364812-6364831 | None:intergenic | 40.0% | |
| GCACTAGTACAAGATAGTGT+TGG | + | chr1_1:6365847-6365866 | Msa0003860:intron | 40.0% | |
| TTGTATACTTGGCCAACTGA+TGG | - | chr1_1:6365874-6365893 | None:intergenic | 40.0% | |
| CAGTTGGCCAAGTATACAAT+AGG | + | chr1_1:6365875-6365894 | Msa0003860:intron | 40.0% | |
| ! | AAAAGAGCACAAGCAATGAG+AGG | + | chr1_1:6365902-6365921 | Msa0003860:intron | 40.0% |
| ! | AAAGAGCACAAGCAATGAGA+GGG | + | chr1_1:6365903-6365922 | Msa0003860:intron | 40.0% |
| ! | AGTGTCGAGCAAGAATACAA+TGG | + | chr1_1:6365937-6365956 | Msa0003860:intron | 40.0% |
| GTGTCGAGCAAGAATACAAT+GGG | + | chr1_1:6365938-6365957 | Msa0003860:intron | 40.0% | |
| ! | TTTAGAGCAGTTTGCAAGAC+TGG | + | chr1_1:6366065-6366084 | Msa0003860:intron | 40.0% |
| TTGTATACTTGGGTAACTGG+TGG | - | chr1_1:6366340-6366359 | None:intergenic | 40.0% | |
| !! | TAACCGAATGTTGATGGTTG+AGG | + | chr1_1:6366426-6366445 | Msa0003860:intron | 40.0% |
| !! | AACCGAATGTTGATGGTTGA+GGG | + | chr1_1:6366427-6366446 | Msa0003860:intron | 40.0% |
| TTTGGGAAAAGCTTAGGAAG+AGG | + | chr1_1:6366520-6366539 | Msa0003860:intron | 40.0% | |
| !! | GGGTATGTGATTGTTGTTTG+TGG | + | chr1_1:6366764-6366783 | Msa0003860:intron | 40.0% |
| CTATCACAATACAGCACGAA+TGG | - | chr1_1:6366813-6366832 | None:intergenic | 40.0% | |
| ! | ACTGTAATTGATGGCTGACT+GGG | - | chr1_1:6367001-6367020 | None:intergenic | 40.0% |
| ! | TACTGTAATTGATGGCTGAC+TGG | - | chr1_1:6367002-6367021 | None:intergenic | 40.0% |
| CAATTACAGTAACCTTGCAC+AGG | + | chr1_1:6367011-6367030 | Msa0003860:CDS | 40.0% | |
| CTTTACGCGCAAACTTCTTT+CGG | - | chr1_1:6367092-6367111 | None:intergenic | 40.0% | |
| TTATCTGGAAGAATGAGCTC+TGG | - | chr1_1:6367159-6367178 | None:intergenic | 40.0% | |
| ! | GTTGCTATCTACTCTGGAAA+AGG | + | chr1_1:6367364-6367383 | Msa0003860:three_prime_UTR | 40.0% |
| CATGTGAAACTCACATGCAT+TGG | - | chr1_1:6367437-6367456 | None:intergenic | 40.0% | |
| TGACCTCCCGAATGAATAAG+CGG | + | chr1_1:6362253-6362272 | Msa0003860:five_prime_UTR | 45.0% | |
| TTTCCGCTTATTCATTCGGG+AGG | - | chr1_1:6362259-6362278 | None:intergenic | 45.0% | |
| !! | AAATGGTGGTGGAAGGAAGA+AGG | - | chr1_1:6362322-6362341 | None:intergenic | 45.0% |
| !! | AGAAGGAAAATGGTGGTGGA+AGG | - | chr1_1:6362329-6362348 | None:intergenic | 45.0% |
| GTGAAGAAGGAAAATGGTGG+TGG | - | chr1_1:6362333-6362352 | None:intergenic | 45.0% | |
| ! | TCTCTGTGGTGTGATGGAAT+AGG | - | chr1_1:6362355-6362374 | None:intergenic | 45.0% |
| CGCTGTATATTGCTCTTCCT+AGG | - | chr1_1:6362436-6362455 | None:intergenic | 45.0% | |
| GGAAGAGCAATATACAGCGT+TGG | + | chr1_1:6362437-6362456 | Msa0003860:CDS | 45.0% | |
| CTCCTAGGGAAAATTACTGC+AGG | + | chr1_1:6362928-6362947 | Msa0003860:intron | 45.0% | |
| GTCATCGGTGATGTTCACAT+TGG | + | chr1_1:6364089-6364108 | Msa0003860:CDS | 45.0% | |
| TTGGCAGAGGATCATCCATT+TGG | + | chr1_1:6364108-6364127 | Msa0003860:CDS | 45.0% | |
| TGGTATGGATGTGTCATGAG+AGG | + | chr1_1:6364128-6364147 | Msa0003860:CDS | 45.0% | |
| TGGAAGTGGAACGAACATTC+AGG | + | chr1_1:6364477-6364496 | Msa0003860:CDS | 45.0% | |
| CTTACATGGTTGCACTGTTG+AGG | + | chr1_1:6364678-6364697 | Msa0003860:CDS | 45.0% | |
| ! | GTTGAGGATGAGGCATTTGT+TGG | + | chr1_1:6364694-6364713 | Msa0003860:CDS | 45.0% |
| ! | GGATGAGGCATTTGTTGGTA+TGG | + | chr1_1:6364699-6364718 | Msa0003860:CDS | 45.0% |
| CCGTGAATTCTGTCTCACAA+GGG | - | chr1_1:6364782-6364801 | None:intergenic | 45.0% | |
| CCCTTGTGAGACAGAATTCA+CGG | + | chr1_1:6364779-6364798 | Msa0003860:CDS | 45.0% | |
| TCCGTGAATTCTGTCTCACA+AGG | - | chr1_1:6364783-6364802 | None:intergenic | 45.0% | |
| CAGAATTCACGGATTCCATC+CGG | + | chr1_1:6364790-6364809 | Msa0003860:CDS | 45.0% | |
| TACAAACATACCTCTCCGGA+TGG | - | chr1_1:6364808-6364827 | None:intergenic | 45.0% | |
| TGCGAGCGATTATGTGTGTT+CGG | + | chr1_1:6364842-6364861 | Msa0003860:intron | 45.0% | |
| AGCGATTATGTGTGTTCGGT+TGG | + | chr1_1:6364846-6364865 | Msa0003860:intron | 45.0% | |
| GCGATTATGTGTGTTCGGTT+GGG | + | chr1_1:6364847-6364866 | Msa0003860:intron | 45.0% | |
| GAAGAAGTCAACGAGAGAGT+GGG | + | chr1_1:6366363-6366382 | Msa0003860:intron | 45.0% | |
| CTCCCTCAACCATCAACATT+CGG | - | chr1_1:6366432-6366451 | None:intergenic | 45.0% | |
| ATGGTTGAGGGAGTAACGAT+GGG | + | chr1_1:6366439-6366458 | Msa0003860:intron | 45.0% | |
| GGAAAAGCTTAGGAAGAGGT+GGG | + | chr1_1:6366524-6366543 | Msa0003860:intron | 45.0% | |
| AGTCCTATAGCTAAAGGCAG+AGG | + | chr1_1:6366646-6366665 | Msa0003860:intron | 45.0% | |
| GTCCTATAGCTAAAGGCAGA+GGG | + | chr1_1:6366647-6366666 | Msa0003860:intron | 45.0% | |
| !! | TGGTGTTGATCGATCCATGT+TGG | + | chr1_1:6366719-6366738 | Msa0003860:intron | 45.0% |
| ! | ACTGCCTCTGGTGATGAAAA+GGG | + | chr1_1:6366744-6366763 | Msa0003860:intron | 45.0% |
| ! | CATACCCTTTTCATCACCAG+AGG | - | chr1_1:6366751-6366770 | None:intergenic | 45.0% |
| CTGCCCAAACCTGCAAATAT+AGG | - | chr1_1:6366924-6366943 | None:intergenic | 45.0% | |
| CTATATTTGCAGGTTTGGGC+AGG | + | chr1_1:6366922-6366941 | Msa0003860:intron | 45.0% | |
| AGCTTCCTCAAGAACTTTGC+CGG | - | chr1_1:6366952-6366971 | None:intergenic | 45.0% | |
| ! | GAGGAGTATGACTCAATGCT+GGG | + | chr1_1:6367114-6367133 | Msa0003860:CDS | 45.0% |
| GGAAAAGGAAAGTTCCCTGA+AGG | + | chr1_1:6367379-6367398 | Msa0003860:three_prime_UTR | 45.0% | |
| TCCACATACACGATCCTTCA+GGG | - | chr1_1:6367396-6367415 | None:intergenic | 45.0% | |
| ATCCACATACACGATCCTTC+AGG | - | chr1_1:6367397-6367416 | None:intergenic | 45.0% | |
| !!! | AAATCATTTTTTATTTTTTT+TGG | + | chr1_1:6362970-6362989 | Msa0003860:intron | 5.0% |
| !!! | AATCATTTTTTATTTTTTTT+GGG | + | chr1_1:6362971-6362990 | Msa0003860:intron | 5.0% |
| !! | AATTATATTAAAGTAAATTT+GGG | - | chr1_1:6365110-6365129 | None:intergenic | 5.0% |
| !! | AAATTATATTAAAGTAAATT+TGG | - | chr1_1:6365111-6365130 | None:intergenic | 5.0% |
| ! | CCTAGGGTTCCCATTTTCGA+TGG | - | chr1_1:6362419-6362438 | None:intergenic | 50.0% |
| CCATCGAAAATGGGAACCCT+AGG | + | chr1_1:6362416-6362435 | Msa0003860:exon | 50.0% | |
| ! | GGCCTGCAGTAATTTTCCCT+AGG | - | chr1_1:6362933-6362952 | None:intergenic | 50.0% |
| GGTGATGTTCACATTGGCAG+AGG | + | chr1_1:6364095-6364114 | Msa0003860:CDS | 50.0% | |
| TGGTTGCACTGTTGAGGATG+AGG | + | chr1_1:6364684-6364703 | Msa0003860:CDS | 50.0% | |
| TGGTATGGGTGCAACACTAC+TGG | + | chr1_1:6364714-6364733 | Msa0003860:CDS | 50.0% | |
| ATGGGTGCAACACTACTGGA+TGG | + | chr1_1:6364718-6364737 | Msa0003860:CDS | 50.0% | |
| AAACATGCCATGGTTGCTGC+TGG | + | chr1_1:6364754-6364773 | Msa0003860:CDS | 50.0% | |
| ! | GATAGTGTTGGGCCATCAGT+TGG | + | chr1_1:6365859-6365878 | Msa0003860:intron | 50.0% |
| ACAAGCAATGAGAGGGAGAG+TGG | + | chr1_1:6365910-6365929 | Msa0003860:intron | 50.0% | |
| CAAGCAATGAGAGGGAGAGT+GGG | + | chr1_1:6365911-6365930 | Msa0003860:intron | 50.0% | |
| GGAAGAAGTCAACGAGAGAG+TGG | + | chr1_1:6366362-6366381 | Msa0003860:intron | 50.0% | |
| GATGGTTGAGGGAGTAACGA+TGG | + | chr1_1:6366438-6366457 | Msa0003860:intron | 50.0% | |
| TGGTTGAGGGAGTAACGATG+GGG | + | chr1_1:6366440-6366459 | Msa0003860:intron | 50.0% | |
| GGGAAAAGCTTAGGAAGAGG+TGG | + | chr1_1:6366523-6366542 | Msa0003860:intron | 50.0% | |
| TGAGGAATTTGACCAGTGCG+AGG | - | chr1_1:6366576-6366595 | None:intergenic | 50.0% | |
| CTCCCTCTGCCTTTAGCTAT+AGG | - | chr1_1:6366652-6366671 | None:intergenic | 50.0% | |
| ! | GACTGCCTCTGGTGATGAAA+AGG | + | chr1_1:6366743-6366762 | Msa0003860:intron | 50.0% |
| GCAATCCGGCAAAGTTCTTG+AGG | + | chr1_1:6366944-6366963 | Msa0003860:CDS | 50.0% | |
| ! | GCTTGGCATTTTCAGCTGCA+TGG | - | chr1_1:6367038-6367057 | None:intergenic | 50.0% |
| GAAGTTTGCGCGTAAAGACG+AGG | + | chr1_1:6367095-6367114 | Msa0003860:CDS | 50.0% | |
| ! | CGAGGAGTATGACTCAATGC+TGG | + | chr1_1:6367113-6367132 | Msa0003860:CDS | 50.0% |
| !! | CTGGAAGAATGAGCTCTGGA+GGG | - | chr1_1:6367155-6367174 | None:intergenic | 50.0% |
| ! | TCTGGAAGAATGAGCTCTGG+AGG | - | chr1_1:6367156-6367175 | None:intergenic | 50.0% |
| TCCCTGAAGGATCGTGTATG+TGG | + | chr1_1:6367392-6367411 | Msa0003860:three_prime_UTR | 50.0% | |
| GGACAAGCCATTGATCGCCT+CGG | + | chr1_1:6362479-6362498 | Msa0003860:CDS | 55.0% | |
| TTCCTTGAAGGCGAGAACCG+AGG | - | chr1_1:6362499-6362518 | None:intergenic | 55.0% | |
| ! | GTGAACATCACCGATGACGG+AGG | - | chr1_1:6364087-6364106 | None:intergenic | 55.0% |
| TGACTTCGCAACGTGCACCA+AGG | - | chr1_1:6364509-6364528 | None:intergenic | 55.0% | |
| GGTCACAGTGCGGTCTTACA+TGG | + | chr1_1:6364664-6364683 | Msa0003860:intron | 55.0% | |
| TTCACGGATTCCATCCGGAG+AGG | + | chr1_1:6364795-6364814 | Msa0003860:CDS | 55.0% | |
| !! | AGCTTCGTGGACGGATTGCA+AGG | + | chr1_1:6365611-6365630 | Msa0003860:intron | 55.0% |
| ! | GATGTCTTGAAGCGCCCGTA+AGG | + | chr1_1:6366300-6366319 | Msa0003860:intron | 55.0% |
| !! | TCCATGTTGGTGACTGCCTC+TGG | + | chr1_1:6366732-6366751 | Msa0003860:intron | 55.0% |
| ACCAGAGGCAGTCACCAACA+TGG | - | chr1_1:6366736-6366755 | None:intergenic | 55.0% | |
| GCGAGAACCGAGGCGATCAA+TGG | - | chr1_1:6362489-6362508 | None:intergenic | 60.0% | |
| !! | ACCGATGACGGAGGCACTTG+GGG | - | chr1_1:6364078-6364097 | None:intergenic | 60.0% |
| !! | CACCGATGACGGAGGCACTT+GGG | - | chr1_1:6364079-6364098 | None:intergenic | 60.0% |
| !! | TCACCGATGACGGAGGCACT+TGG | - | chr1_1:6364080-6364099 | None:intergenic | 60.0% |
| !! | AAGGGCACCAGCAGCAACCA+TGG | - | chr1_1:6364764-6364783 | None:intergenic | 60.0% |
| ! | GTCTTGAAGCGCCCGTAAGG+AGG | + | chr1_1:6366303-6366322 | Msa0003860:intron | 60.0% |
| GCAGGTTTGGGCAGGCAATC+CGG | + | chr1_1:6366930-6366949 | Msa0003860:intron | 60.0% | |
| CAGCTGCATGGACCTGTGCA+AGG | - | chr1_1:6367026-6367045 | None:intergenic | 60.0% | |
| CGCCTCGGTTCTCGCCTTCA+AGG | + | chr1_1:6362494-6362513 | Msa0003860:CDS | 65.0% | |
| GCCCCAAGTGCCTCCGTCAT+CGG | + | chr1_1:6364074-6364093 | Msa0003860:CDS | 65.0% | |
| GCACTGGGCAGGTCACAGTG+CGG | + | chr1_1:6364654-6364673 | Msa0003860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6362247 | 6367631 | 6362247 | ID=Msa0003860;Name=Msa0003860 |
| chr1_1 | mRNA | 6362247 | 6367631 | 6362247 | ID=Msa0003860-mRNA-1;Parent=Msa0003860;Name=Msa0003860-mRNA-1;_AED=0.06;_eAED=0.06;_QI=178|1|1|1|1|1|5|416|272 |
| chr1_1 | exon | 6362247 | 6362539 | 6362247 | ID=Msa0003860-mRNA-1:exon:2069;Parent=Msa0003860-mRNA-1 |
| chr1_1 | exon | 6364006 | 6364149 | 6364006 | ID=Msa0003860-mRNA-1:exon:2070;Parent=Msa0003860-mRNA-1 |
| chr1_1 | exon | 6364455 | 6364580 | 6364455 | ID=Msa0003860-mRNA-1:exon:2071;Parent=Msa0003860-mRNA-1 |
| chr1_1 | exon | 6364665 | 6364816 | 6364665 | ID=Msa0003860-mRNA-1:exon:2072;Parent=Msa0003860-mRNA-1 |
| chr1_1 | exon | 6366934 | 6367631 | 6366934 | ID=Msa0003860-mRNA-1:exon:2073;Parent=Msa0003860-mRNA-1 |
| chr1_1 | five_prime_UTR | 6362247 | 6362424 | 6362247 | ID=Msa0003860-mRNA-1:five_prime_utr;Parent=Msa0003860-mRNA-1 |
| chr1_1 | CDS | 6362425 | 6362539 | 6362425 | ID=Msa0003860-mRNA-1:cds;Parent=Msa0003860-mRNA-1 |
| chr1_1 | CDS | 6364006 | 6364149 | 6364006 | ID=Msa0003860-mRNA-1:cds;Parent=Msa0003860-mRNA-1 |
| chr1_1 | CDS | 6364455 | 6364580 | 6364455 | ID=Msa0003860-mRNA-1:cds;Parent=Msa0003860-mRNA-1 |
| chr1_1 | CDS | 6364665 | 6364816 | 6364665 | ID=Msa0003860-mRNA-1:cds;Parent=Msa0003860-mRNA-1 |
| chr1_1 | CDS | 6366934 | 6367215 | 6366934 | ID=Msa0003860-mRNA-1:cds;Parent=Msa0003860-mRNA-1 |
| chr1_1 | three_prime_UTR | 6367216 | 6367631 | 6367216 | ID=Msa0003860-mRNA-1:three_prime_utr;Parent=Msa0003860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
