Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043640 | XP_013466129.1 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043640 | sp|Q9FWR5|GCA1_ARATH | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.01e-175 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043640 | I3SYK2 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003860 | Msa1043640 | 0.956409 | 3.160908e-114 | -8.615850e-47 |
| Msa0146410 | Msa1043640 | 0.891873 | 2.667329e-74 | -8.615850e-47 |
| Msa1043640 | Msa1374160 | 0.953332 | 3.459400e-111 | -8.615850e-47 |
| Msa1043640 | Msa1382660 | 0.947920 | 2.623288e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043640 | MtrunA17_Chr1g0155361 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Msa1043640 | MtrunA17_Chr3g0141721 | 84.701 | 268 | 40 | 1 | 1 | 268 | 1 | 267 | 2.71e-171 | 474 |
| Msa1043640 | MtrunA17_Chr5g0404561 | 79.336 | 271 | 54 | 2 | 1 | 270 | 1 | 270 | 1.40e-159 | 444 |
| Msa1043640 | MtrunA17_Chr8g0386291 | 36.792 | 212 | 127 | 2 | 17 | 228 | 37 | 241 | 3.83e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1043640 | AT1G19580.1 | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.05e-176 | 487 |
| Msa1043640 | AT1G47260.1 | 81.061 | 264 | 50 | 0 | 1 | 264 | 1 | 264 | 9.89e-167 | 462 |
| Msa1043640 | AT5G66510.1 | 74.340 | 265 | 59 | 3 | 1 | 265 | 1 | 256 | 4.92e-147 | 412 |
| Msa1043640 | AT5G66510.2 | 71.377 | 276 | 59 | 4 | 1 | 265 | 1 | 267 | 2.67e-143 | 403 |
| Msa1043640 | AT1G19580.2 | 88.827 | 179 | 20 | 0 | 1 | 179 | 1 | 179 | 7.84e-119 | 339 |
| Msa1043640 | AT5G63510.1 | 38.503 | 187 | 114 | 1 | 42 | 228 | 55 | 240 | 5.24e-41 | 142 |
| Msa1043640 | AT3G48680.1 | 37.968 | 187 | 115 | 1 | 42 | 228 | 59 | 244 | 1.95e-40 | 140 |
| Msa1043640 | AT5G63510.2 | 35.047 | 214 | 111 | 4 | 42 | 228 | 55 | 267 | 3.54e-35 | 127 |
| Msa1043640 | AT1G47420.1 | 51.163 | 86 | 29 | 1 | 1 | 86 | 1 | 73 | 1.40e-17 | 80.5 |
Find 121 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACATGTTTGTTATTAT+TGG | 0.144123 | 7_2:+1833673 | None:intergenic |
| CAATATACAGCGTTGGATTT+TGG | 0.184113 | 7_2:-1838553 | Msa1043640:CDS |
| TTCGAATTCTCCATCGAAAA+TGG | 0.194976 | 7_2:-1838591 | Msa1043640:exon |
| TTCGATGGAGAATTCGAATT+TGG | 0.210598 | 7_2:+1838596 | None:intergenic |
| TTCATTCGGGAGGTCAATTT+CGG | 0.252936 | 7_2:+1838751 | None:intergenic |
| TTACGTTCCAGATATTATTT+TGG | 0.270771 | 7_2:-1833510 | Msa1043640:three_prime_UTR |
| AAGGTGTTGCCTACTATTAT+TGG | 0.284723 | 7_2:-1836459 | Msa1043640:CDS |
| AGGTGTTGCCTACTATTATT+GGG | 0.302756 | 7_2:-1836458 | Msa1043640:CDS |
| TTATTTGTTGTGAATTGATT+TGG | 0.309682 | 7_2:+1833434 | None:intergenic |
| AAAGTGACTAACGCTGTTCT+TGG | 0.312952 | 7_2:+1838468 | None:intergenic |
| TGTTTAGGTAGGACATTATC+TGG | 0.316419 | 7_2:+1833818 | None:intergenic |
| GGGACATGTTTGTTATTATT+GGG | 0.318660 | 7_2:+1833674 | None:intergenic |
| TACTTTCCGCTTATTCATTC+GGG | 0.327530 | 7_2:+1838738 | None:intergenic |
| GTACTTTCCGCTTATTCATT+CGG | 0.332540 | 7_2:+1838737 | None:intergenic |
| AGCTTCCTCAAGAACTTTGC+CGG | 0.334411 | 7_2:+1834040 | None:intergenic |
| CTTTACGCGCAAACTTCTTT+CGG | 0.336036 | 7_2:+1833900 | None:intergenic |
| TATTTGTTGTGAATTGATTT+GGG | 0.360728 | 7_2:+1833435 | None:intergenic |
| TCATTCGGGAGGTCAATTTC+GGG | 0.376065 | 7_2:+1838752 | None:intergenic |
| CTGATGACCAAAATAATATC+TGG | 0.379939 | 7_2:+1833503 | None:intergenic |
| TCAAACTCAATTTCATCAAA+AGG | 0.380051 | 7_2:+1833932 | None:intergenic |
| GAATAGGTGAAGAAGGAAAA+TGG | 0.384580 | 7_2:+1838661 | None:intergenic |
| CGCCTCGGTTCTCGCCTTCA+AGG | 0.386977 | 7_2:-1838503 | Msa1043640:CDS |
| GTGGAAACCTTTGTTTGTTT+AGG | 0.399925 | 7_2:+1833803 | None:intergenic |
| GGATGAGGCATTTGTTGGTA+TGG | 0.402155 | 7_2:-1836301 | Msa1043640:CDS |
| TTTGATGAACATATTTGATA+AGG | 0.410702 | 7_2:-1836975 | Msa1043640:CDS |
| CTCAATTTCATCAAAAGGCT+TGG | 0.413672 | 7_2:+1833937 | None:intergenic |
| TACTGTAATTGATGGCTGAC+TGG | 0.414279 | 7_2:+1833990 | None:intergenic |
| TGGAAGTGGAACGAACATTC+AGG | 0.417411 | 7_2:-1836523 | Msa1043640:CDS |
| ATCCACATACACGATCCTTC+AGG | 0.420689 | 7_2:+1833595 | None:intergenic |
| GCAGGTTTGGGCAGGCAATC+CGG | 0.427230 | 7_2:-1834059 | Msa1043640:intron |
| CGCTGTATATTGCTCTTCCT+AGG | 0.432752 | 7_2:+1838564 | None:intergenic |
| CTATATTTGCAGGTTTGGGC+AGG | 0.438052 | 7_2:-1834067 | Msa1043640:intron |
| ATGAATAAGCGGAAAGTACT+AGG | 0.441855 | 7_2:-1838733 | Msa1043640:five_prime_UTR |
| ATATTGTGGAGCTATTGATC+TGG | 0.442749 | 7_2:+1833653 | None:intergenic |
| GGAAGTAGTAGTTTCCTTGA+AGG | 0.444566 | 7_2:+1838489 | None:intergenic |
| TTGGCAGAGGATCATCCATT+TGG | 0.451417 | 7_2:-1836889 | Msa1043640:CDS |
| TCACCGATGACGGAGGCACT+TGG | 0.455404 | 7_2:+1836920 | None:intergenic |
| TTTGTAGTTGCTATCTACTC+TGG | 0.459816 | 7_2:-1833631 | Msa1043640:three_prime_UTR |
| AATGCATCTTTATCAACAAC+GGG | 0.459975 | 7_2:+1836950 | None:intergenic |
| ACATTATCCCCAATAATAGT+AGG | 0.462118 | 7_2:+1836450 | None:intergenic |
| TCGAATTCTCCATCGAAAAT+GGG | 0.468600 | 7_2:-1838590 | Msa1043640:exon |
| CACCGATGACGGAGGCACTT+GGG | 0.479686 | 7_2:+1836921 | None:intergenic |
| GTTGAGGATGAGGCATTTGT+TGG | 0.479806 | 7_2:-1836306 | Msa1043640:CDS |
| GTTGCTATCTACTCTGGAAA+AGG | 0.484435 | 7_2:-1833625 | Msa1043640:three_prime_UTR |
| CATGACACATCCATACCAAA+TGG | 0.491582 | 7_2:+1836874 | None:intergenic |
| GCCCCAAGTGCCTCCGTCAT+CGG | 0.493477 | 7_2:-1836923 | Msa1043640:CDS |
| CGAGGAGTATGACTCAATGC+TGG | 0.495730 | 7_2:-1833876 | Msa1043640:CDS |
| CCCTTGTGAGACAGAATTCA+CGG | 0.497709 | 7_2:-1836221 | Msa1043640:CDS |
| CTTTATAATAAGATGAAAGG+TGG | 0.500506 | 7_2:-1833465 | Msa1043640:three_prime_UTR |
| GTTGCGAAGTCAAATTTAAG+TGG | 0.500521 | 7_2:-1836483 | Msa1043640:CDS |
| TTTGTTCAAATTCATGGAAG+AGG | 0.507441 | 7_2:-1833711 | Msa1043640:three_prime_UTR |
| CAGAATTCACGGATTCCATC+CGG | 0.507689 | 7_2:-1836210 | Msa1043640:CDS |
| TGCAAGGTTACTGTAATTGA+TGG | 0.508085 | 7_2:+1833982 | None:intergenic |
| TTATCTGGAAGAATGAGCTC+TGG | 0.510631 | 7_2:+1833833 | None:intergenic |
| TGGTATGGGTGCAACACTAC+TGG | 0.514205 | 7_2:-1836286 | Msa1043640:CDS |
| TCCACATACACGATCCTTCA+GGG | 0.517962 | 7_2:+1833596 | None:intergenic |
| ACCGATGACGGAGGCACTTG+GGG | 0.523236 | 7_2:+1836922 | None:intergenic |
| TTGTTCAAATTCATGGAAGA+GGG | 0.524350 | 7_2:-1833710 | Msa1043640:three_prime_UTR |
| GCGAGAACCGAGGCGATCAA+TGG | 0.526580 | 7_2:+1838511 | None:intergenic |
| CATGTGAAACTCACATGCAT+TGG | 0.537464 | 7_2:+1833555 | None:intergenic |
| GGTCACAGTGCGGTCTTACA+TGG | 0.537571 | 7_2:-1836336 | Msa1043640:CDS |
| GCTGTATATTGCTCTTCCTA+GGG | 0.544124 | 7_2:+1838565 | None:intergenic |
| TTGCTTTATAATAAGATGAA+AGG | 0.546529 | 7_2:-1833468 | Msa1043640:three_prime_UTR |
| CAGCTGCATGGACCTGTGCA+AGG | 0.546560 | 7_2:+1833966 | None:intergenic |
| TCCCTGAAGGATCGTGTATG+TGG | 0.547029 | 7_2:-1833597 | Msa1043640:three_prime_UTR |
| TATTGTGGAGCTATTGATCT+GGG | 0.547920 | 7_2:+1833654 | None:intergenic |
| CCATCGAAAATGGGAACCCT+AGG | 0.548387 | 7_2:-1838581 | Msa1043640:exon |
| AAATGGTGGTGAGTGGAAGA+AGG | 0.549936 | 7_2:+1838678 | None:intergenic |
| AAACATGCCATGGTTGCTGC+TGG | 0.555478 | 7_2:-1836246 | Msa1043640:CDS |
| GATGAGGCATTTGTTGGTAT+GGG | 0.557130 | 7_2:-1836300 | Msa1043640:CDS |
| ATTGGGGATAATGTTACTGT+AGG | 0.557745 | 7_2:-1836441 | Msa1043640:intron |
| GATAGCAACTACAAATATTG+TGG | 0.558085 | 7_2:+1833639 | None:intergenic |
| TTTATAATAAGATGAAAGGT+GGG | 0.558966 | 7_2:-1833464 | Msa1043640:three_prime_UTR |
| AAATGCATCTTTATCAACAA+CGG | 0.563384 | 7_2:+1836949 | None:intergenic |
| AGAGGATCATCCATTTGGTA+TGG | 0.566846 | 7_2:-1836884 | Msa1043640:CDS |
| TCTCTGTGGTGTGATGGAAT+AGG | 0.566944 | 7_2:+1838645 | None:intergenic |
| AGAATTTCTCTGTGGTGTGA+TGG | 0.568426 | 7_2:+1838639 | None:intergenic |
| AACAACATCAGTGTTGGAAG+TGG | 0.575912 | 7_2:-1836537 | Msa1043640:CDS |
| AAACCTTTGTTTGTTTAGGT+AGG | 0.577011 | 7_2:+1833807 | None:intergenic |
| CTTACATGGTTGCACTGTTG+AGG | 0.578504 | 7_2:-1836322 | Msa1043640:CDS |
| GGAAGAGCAATATACAGCGT+TGG | 0.581089 | 7_2:-1838560 | Msa1043640:CDS |
| ACTGTAATTGATGGCTGACT+GGG | 0.582150 | 7_2:+1833991 | None:intergenic |
| CACACACATACCTCTCCGGA+TGG | 0.584145 | 7_2:+1836195 | None:intergenic |
| GAACATTCAGGATAACTCCT+TGG | 0.585092 | 7_2:-1836511 | Msa1043640:CDS |
| TGGTTGCACTGTTGAGGATG+AGG | 0.587457 | 7_2:-1836316 | Msa1043640:CDS |
| AATGTGAACATCACCGATGA+CGG | 0.591114 | 7_2:+1836910 | None:intergenic |
| AAGGGCACCAGCAGCAACCA+TGG | 0.591319 | 7_2:+1836239 | None:intergenic |
| TCTGGAAGAATGAGCTCTGG+AGG | 0.591755 | 7_2:+1833836 | None:intergenic |
| TGTACACACACATACCTCTC+CGG | 0.592188 | 7_2:+1836191 | None:intergenic |
| TTGCGAAGTCAAATTTAAGT+GGG | 0.594604 | 7_2:-1836482 | Msa1043640:CDS |
| GCAATCCGGCAAAGTTCTTG+AGG | 0.596618 | 7_2:-1834045 | Msa1043640:CDS |
| GAAGTCAAATTTAAGTGGGA+AGG | 0.601013 | 7_2:-1836478 | Msa1043640:CDS |
| GGAAAAGGAAAGTTCCCTGA+AGG | 0.602605 | 7_2:-1833610 | Msa1043640:three_prime_UTR |
| TGTGATGGAATAGGTGAAGA+AGG | 0.604030 | 7_2:+1838654 | None:intergenic |
| GGTGATGTTCACATTGGCAG+AGG | 0.604788 | 7_2:-1836902 | Msa1043640:CDS |
| GAGGAGTATGACTCAATGCT+GGG | 0.608575 | 7_2:-1833875 | Msa1043640:CDS |
| TCTTTAAAGATCTCATTGTG+TGG | 0.610119 | 7_2:+1833784 | None:intergenic |
| GGACAAGCCATTGATCGCCT+CGG | 0.617682 | 7_2:-1838518 | Msa1043640:CDS |
| TTTCCGCTTATTCATTCGGG+AGG | 0.619619 | 7_2:+1838741 | None:intergenic |
| TCCGTGAATTCTGTCTCACA+AGG | 0.619899 | 7_2:+1836220 | None:intergenic |
| CAATTACAGTAACCTTGCAC+AGG | 0.620160 | 7_2:-1833978 | Msa1043640:CDS |
| AGAAGGAAAATGGTGGTGAG+TGG | 0.620505 | 7_2:+1838671 | None:intergenic |
| TGTCCTACCTAAACAAACAA+AGG | 0.621913 | 7_2:-1833810 | Msa1043640:CDS |
| TGACCTCCCGAATGAATAAG+CGG | 0.623321 | 7_2:-1838744 | Msa1043640:five_prime_UTR |
| CTGGAAGAATGAGCTCTGGA+GGG | 0.626080 | 7_2:+1833837 | None:intergenic |
| TGATGAAATTGAGTTTGAGA+AGG | 0.626270 | 7_2:-1833927 | Msa1043640:CDS |
| GATGTGAACAACATCAGTGT+TGG | 0.633059 | 7_2:-1836543 | Msa1043640:CDS |
| GAAGTTTGCGCGTAAAGACG+AGG | 0.633888 | 7_2:-1833894 | Msa1043640:CDS |
| GGTGTTGCCTACTATTATTG+GGG | 0.645236 | 7_2:-1836457 | Msa1043640:CDS |
| GTCATCGGTGATGTTCACAT+TGG | 0.648843 | 7_2:-1836908 | Msa1043640:CDS |
| TTCCTTGAAGGCGAGAACCG+AGG | 0.652401 | 7_2:+1838501 | None:intergenic |
| TGTTGTTGAGAAACATGCCA+TGG | 0.655725 | 7_2:-1836256 | Msa1043640:CDS |
| TTCACGGATTCCATCCGGAG+AGG | 0.692353 | 7_2:-1836205 | Msa1043640:intron |
| ATGGGTGCAACACTACTGGA+TGG | 0.693665 | 7_2:-1836282 | Msa1043640:CDS |
| TGACTTCGCAACGTGCACCA+AGG | 0.699119 | 7_2:+1836494 | None:intergenic |
| GTGAACATCACCGATGACGG+AGG | 0.701387 | 7_2:+1836913 | None:intergenic |
| TGGTATGGATGTGTCATGAG+AGG | 0.706530 | 7_2:-1836869 | Msa1043640:intron |
| CCGTGAATTCTGTCTCACAA+GGG | 0.725853 | 7_2:+1836221 | None:intergenic |
| GATTCAGAAGAATTTCTCTG+TGG | 0.740529 | 7_2:+1838631 | None:intergenic |
| GCACTGGGCAGGTCACAGTG+CGG | 0.741494 | 7_2:-1836346 | Msa1043640:intron |
| TAGGTGAAGAAGGAAAATGG+TGG | 0.746528 | 7_2:+1838664 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTTTATTTTTTTTG+GGG | - | chr7_2:1834105-1834124 | Msa1043640:intron | 10.0% |
| !!! | TTATTTTTTTTGAATGTTTT+TGG | + | chr7_2:1835426-1835445 | None:intergenic | 10.0% |
| !! | AGATAAATTAAAGTAAATTT+GGG | + | chr7_2:1836238-1836257 | None:intergenic | 10.0% |
| !! | TAGATAAATTAAAGTAAATT+TGG | + | chr7_2:1836239-1836258 | None:intergenic | 10.0% |
| !! | TGATAATCATATTAAAATGT+TGG | - | chr7_2:1833766-1833785 | Msa1043640:three_prime_UTR | 15.0% |
| !! | ATTTAACATTATACAAAACA+GGG | + | chr7_2:1834087-1834106 | None:intergenic | 15.0% |
| !!! | TCATTTTTTATTTTTTTTGG+GGG | - | chr7_2:1834106-1834125 | Msa1043640:intron | 15.0% |
| !!! | TTCTTTTAAAAATAGTTTGT+AGG | - | chr7_2:1834444-1834463 | Msa1043640:intron | 15.0% |
| !!! | TTGATATGTTTTAATTTTCA+TGG | + | chr7_2:1835093-1835112 | None:intergenic | 15.0% |
| !! | AATATAATTTCAACAATACT+CGG | - | chr7_2:1836262-1836281 | Msa1043640:CDS | 15.0% |
| !! | ATATTATACATCCAAAATAA+AGG | + | chr7_2:1836366-1836385 | None:intergenic | 15.0% |
| !!! | AAATCGATTTATTTGAATTT+TGG | - | chr7_2:1836443-1836462 | Msa1043640:CDS | 15.0% |
| !!! | AAACTTTAAGAATTTTAGAA+GGG | + | chr7_2:1836657-1836676 | None:intergenic | 15.0% |
| !! | TTAAAGTTTCTAAGTATATT+TGG | - | chr7_2:1836668-1836687 | Msa1043640:intron | 15.0% |
| !! | AATCTAATTTAACCATAATA+TGG | + | chr7_2:1836700-1836719 | None:intergenic | 15.0% |
| !! | CATAAATAAAAACAGATTAG+AGG | + | chr7_2:1833748-1833767 | None:intergenic | 20.0% |
| !! | GGAAAATGATTGAAATAAAT+GGG | - | chr7_2:1833952-1833971 | Msa1043640:CDS | 20.0% |
| !! | GATTTAACATTATACAAAAC+AGG | + | chr7_2:1834088-1834107 | None:intergenic | 20.0% |
| !!! | ATAAATCTTTTTGTCAAACA+TGG | + | chr7_2:1834196-1834215 | None:intergenic | 20.0% |
| !! | ATGTTTGACAAAAAGATTTA+TGG | - | chr7_2:1834195-1834214 | Msa1043640:intron | 20.0% |
| !!! | TAAAAATAGTTTGTAGGTTT+AGG | - | chr7_2:1834450-1834469 | Msa1043640:intron | 20.0% |
| !!! | ATCTTTCAAGTTGTTAATAT+TGG | + | chr7_2:1834524-1834543 | None:intergenic | 20.0% |
| !! | ATAACTCTATATCATTTAAC+TGG | - | chr7_2:1835021-1835040 | Msa1043640:intron | 20.0% |
| !! | TTTGATGAACATATTTGATA+AGG | - | chr7_2:1835155-1835174 | Msa1043640:intron | 20.0% |
| !!! | ATATCACATTTTTCCTTTAA+CGG | - | chr7_2:1835749-1835768 | Msa1043640:intron | 20.0% |
| !! | AATTACAATTTCAAAGATCT+AGG | - | chr7_2:1836005-1836024 | Msa1043640:intron | 20.0% |
| !! | TGATTTATTTACATAGCTTT+AGG | - | chr7_2:1836057-1836076 | Msa1043640:intron | 20.0% |
| !! | CTAACTCATATTATATTGTA+TGG | + | chr7_2:1836104-1836123 | None:intergenic | 20.0% |
| !! | CATACAATATAATATGAGTT+AGG | - | chr7_2:1836102-1836121 | Msa1043640:intron | 20.0% |
| !!! | ATCTTTCCAGTATTATATTT+TGG | - | chr7_2:1836144-1836163 | Msa1043640:intron | 20.0% |
| !!! | ATACTTTTTTATGGAGTATT+TGG | + | chr7_2:1836214-1836233 | None:intergenic | 20.0% |
| !!! | AATTTGGGAATACTTTTTTA+TGG | + | chr7_2:1836223-1836242 | None:intergenic | 20.0% |
| !!! | GGTTTCTAAAAGTATTAATT+GGG | + | chr7_2:1836345-1836364 | None:intergenic | 20.0% |
| !!! | AGGTTTCTAAAAGTATTAAT+TGG | + | chr7_2:1836346-1836365 | None:intergenic | 20.0% |
| !!! | ACTTTTAGAAACCTTTATTT+TGG | - | chr7_2:1836352-1836371 | Msa1043640:intron | 20.0% |
| !! | TCTACAATAAAGATATAAAC+AGG | - | chr7_2:1836531-1836550 | Msa1043640:CDS | 20.0% |
| !! | TATTGAGTATGAATCTTATA+AGG | + | chr7_2:1836608-1836627 | None:intergenic | 20.0% |
| !!! | GAAACTTTAAGAATTTTAGA+AGG | + | chr7_2:1836658-1836677 | None:intergenic | 20.0% |
| !! | ATTTGGAAATTACCATATTA+TGG | - | chr7_2:1836685-1836704 | Msa1043640:intron | 20.0% |
| !! | TTAGATTGAAAACCTTTAAA+TGG | - | chr7_2:1836713-1836732 | Msa1043640:intron | 20.0% |
| !! | ATCTAGAAATTATCATACTA+TGG | - | chr7_2:1837142-1837161 | Msa1043640:intron | 20.0% |
| !! | TTGCTTTATAATAAGATGAA+AGG | - | chr7_2:1838662-1838681 | Msa1043640:five_prime_UTR | 20.0% |
| !! | TTTATAATAAGATGAAAGGT+GGG | - | chr7_2:1838666-1838685 | Msa1043640:five_prime_UTR | 20.0% |
| !!! | TATTTGTTGTGAATTGATTT+GGG | + | chr7_2:1838698-1838717 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTGAATTGATT+TGG | + | chr7_2:1838699-1838718 | None:intergenic | 20.0% |
| !! | AGTACTTGTGTTTTATGTAT+TGG | - | chr7_2:1833821-1833840 | Msa1043640:CDS | 25.0% |
| ! | GGGAAAATGATTGAAATAAA+TGG | - | chr7_2:1833951-1833970 | Msa1043640:CDS | 25.0% |
| ! | GAAACAACATATTAAGATTC+TGG | - | chr7_2:1834006-1834025 | Msa1043640:CDS | 25.0% |
| !! | TTTTTCTACCATAAAGAGAA+TGG | + | chr7_2:1834145-1834164 | None:intergenic | 25.0% |
| ! | TTGACAAAAAGATTTATGGT+TGG | - | chr7_2:1834199-1834218 | Msa1043640:intron | 25.0% |
| ! | GATACAATTGTGATATGAAA+TGG | - | chr7_2:1834261-1834280 | Msa1043640:intron | 25.0% |
| !! | GAATAGAGAAAATGATTTGT+TGG | - | chr7_2:1834577-1834596 | Msa1043640:intron | 25.0% |
| !! | ATTTGTTGGTATTGAAACTT+GGG | - | chr7_2:1834591-1834610 | Msa1043640:intron | 25.0% |
| ! | TTATTCTTGTGTAGAAAGTA+AGG | - | chr7_2:1834639-1834658 | Msa1043640:intron | 25.0% |
| ! | AGTTGAATGTTTGAATGAAA+GGG | - | chr7_2:1834662-1834681 | Msa1043640:intron | 25.0% |
| ! | TAGTCATGTATGAAATTGTT+TGG | - | chr7_2:1834894-1834913 | Msa1043640:intron | 25.0% |
| ! | CACTAAAAACAATAACAAAG+AGG | + | chr7_2:1835121-1835140 | None:intergenic | 25.0% |
| !!! | TGTTATTGTTTTTAGTGTCT+AGG | - | chr7_2:1835124-1835143 | Msa1043640:intron | 25.0% |
| ! | AAATGCATCTTTATCAACAA+CGG | + | chr7_2:1835184-1835203 | None:intergenic | 25.0% |
| ! | AAGTATTCCATGAATAAATC+TGG | + | chr7_2:1835363-1835382 | None:intergenic | 25.0% |
| !! | AAGACATTTTCTTTAACTAC+TGG | - | chr7_2:1835387-1835406 | Msa1043640:intron | 25.0% |
| !! | AGACATTTTCTTTAACTACT+GGG | - | chr7_2:1835388-1835407 | Msa1043640:intron | 25.0% |
| !!! | TTTGAATGTTTTTGGAATCA+GGG | + | chr7_2:1835418-1835437 | None:intergenic | 25.0% |
| !!! | TTTTGAATGTTTTTGGAATC+AGG | + | chr7_2:1835419-1835438 | None:intergenic | 25.0% |
| ! | CAGAGAAATAAACTTTGTAT+TGG | + | chr7_2:1835457-1835476 | None:intergenic | 25.0% |
| !!! | TAATATTTTGGCATTGATCA+TGG | - | chr7_2:1835724-1835743 | Msa1043640:intron | 25.0% |
| !! | TATCACATTTTTCCTTTAAC+GGG | - | chr7_2:1835750-1835769 | Msa1043640:intron | 25.0% |
| ! | AATTTCAAAGATCTAGGTAA+AGG | - | chr7_2:1836011-1836030 | Msa1043640:intron | 25.0% |
| ! | GTAAAGGAGTGAAATATAAT+TGG | - | chr7_2:1836027-1836046 | Msa1043640:intron | 25.0% |
| !!! | TAGCTTTAGGATAATTTTGT+TGG | - | chr7_2:1836070-1836089 | Msa1043640:intron | 25.0% |
| ! | AAGAAGCCAAAATATAATAC+TGG | + | chr7_2:1836153-1836172 | None:intergenic | 25.0% |
| !!! | TATTTGAATTTTGGCATACA+TGG | - | chr7_2:1836452-1836471 | Msa1043640:CDS | 25.0% |
| ! | TATCACATGATACAAATCAA+TGG | - | chr7_2:1836487-1836506 | Msa1043640:CDS | 25.0% |
| ! | ATACGTGATATACTTACTAT+GGG | + | chr7_2:1836569-1836588 | None:intergenic | 25.0% |
| ! | ATTTACAAGAGTCCATTTAA+AGG | + | chr7_2:1836728-1836747 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTAATATG+CGG | - | chr7_2:1836778-1836797 | Msa1043640:intron | 25.0% |
| ! | ATTAGTGTTCTTCATTGAAA+AGG | - | chr7_2:1836807-1836826 | Msa1043640:intron | 25.0% |
| !! | AAAAAACCGTCTTTGAAAAA+TGG | - | chr7_2:1836839-1836858 | Msa1043640:intron | 25.0% |
| ! | AATGGTATGTGAAACAAAAT+AGG | - | chr7_2:1836857-1836876 | Msa1043640:intron | 25.0% |
| !!! | TTATGTGACTTTGGTTTTAA+TGG | - | chr7_2:1836950-1836969 | Msa1043640:CDS | 25.0% |
| ! | TTTATCTCCTATTGTATACT+TGG | + | chr7_2:1837026-1837045 | None:intergenic | 25.0% |
| ! | TTACATCGAAAACATATAAC+TGG | - | chr7_2:1837169-1837188 | Msa1043640:intron | 25.0% |
| !!! | TGCTCTAAATTTTACATCTA+TGG | + | chr7_2:1837195-1837214 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTATTAAG+TGG | - | chr7_2:1837246-1837265 | Msa1043640:intron | 25.0% |
| ! | AGATGTTATCCTTATTAAGT+GGG | - | chr7_2:1837247-1837266 | Msa1043640:intron | 25.0% |
| ! | TTAATATAACCGAATGTTGA+TGG | - | chr7_2:1837561-1837580 | Msa1043640:intron | 25.0% |
| !! | AATCTCATCTTATTTCAGTT+CGG | + | chr7_2:1837745-1837764 | None:intergenic | 25.0% |
| ! | TCAAACTCAATTTCATCAAA+AGG | + | chr7_2:1838201-1838220 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTGTTCAAATTCA+TGG | - | chr7_2:1838413-1838432 | Msa1043640:intron | 25.0% |
| !! | TTACGTTCCAGATATTATTT+TGG | - | chr7_2:1838620-1838639 | Msa1043640:five_prime_UTR | 25.0% |
| ! | CTTTATAATAAGATGAAAGG+TGG | - | chr7_2:1838665-1838684 | Msa1043640:five_prime_UTR | 25.0% |
| ACATAGAGAAACGGTAATTA+CGG | + | chr7_2:1833713-1833732 | None:intergenic | 30.0% | |
| GATCTTAAGACATAGAGAAA+CGG | + | chr7_2:1833722-1833741 | None:intergenic | 30.0% | |
| ! | GAATTAGTAGAAGCATATAG+TGG | - | chr7_2:1833974-1833993 | Msa1043640:CDS | 30.0% |
| TTGAGTTTCCATTCTCTTTA+TGG | - | chr7_2:1834134-1834153 | Msa1043640:intron | 30.0% | |
| ! | TGGCTTTTCTTCAAAAACAT+AGG | - | chr7_2:1834281-1834300 | Msa1043640:intron | 30.0% |
| GAAAAAGTCATGCTTTCATA+TGG | - | chr7_2:1834544-1834563 | Msa1043640:intron | 30.0% | |
| !! | GATTTGTTGGTATTGAAACT+TGG | - | chr7_2:1834590-1834609 | Msa1043640:intron | 30.0% |
| GAGTTGAATGTTTGAATGAA+AGG | - | chr7_2:1834661-1834680 | Msa1043640:intron | 30.0% | |
| !!! | TCTTCAATCTTTTTTCTCAC+AGG | - | chr7_2:1834752-1834771 | Msa1043640:intron | 30.0% |
| AAAAACATCCTCAACAAAGA+AGG | + | chr7_2:1834815-1834834 | None:intergenic | 30.0% | |
| !! | TTTGTTGAGGATGTTTTTGT+TGG | - | chr7_2:1834817-1834836 | Msa1043640:intron | 30.0% |
| !! | TTGTTGAGGATGTTTTTGTT+GGG | - | chr7_2:1834818-1834837 | Msa1043640:intron | 30.0% |
| ! | TGATGCATTTGGAATTGAAA+TGG | - | chr7_2:1834863-1834882 | Msa1043640:intron | 30.0% |
| ACTCTATATCATTTAACTGG+TGG | - | chr7_2:1835024-1835043 | Msa1043640:intron | 30.0% | |
| TCATTTAACTGGTGGAAAAA+TGG | - | chr7_2:1835032-1835051 | Msa1043640:intron | 30.0% | |
| TGGTGGAAAAATGGTTTAAT+GGG | - | chr7_2:1835041-1835060 | Msa1043640:intron | 30.0% | |
| AATGCATCTTTATCAACAAC+GGG | + | chr7_2:1835183-1835202 | None:intergenic | 30.0% | |
| CCAAAAGTTTAATGCCTAAT+TGG | + | chr7_2:1835304-1835323 | None:intergenic | 30.0% | |
| ! | CCAATTAGGCATTAAACTTT+TGG | - | chr7_2:1835301-1835320 | Msa1043640:intron | 30.0% |
| ! | TTAGGCATTAAACTTTTGGT+TGG | - | chr7_2:1835305-1835324 | Msa1043640:intron | 30.0% |
| !!! | CTTTTGGTTGGTTTATCATT+TGG | - | chr7_2:1835317-1835336 | Msa1043640:intron | 30.0% |
| TGAGTAACCAGATTTATTCA+TGG | - | chr7_2:1835353-1835372 | Msa1043640:intron | 30.0% | |
| ! | GACATTTTCTTTAACTACTG+GGG | - | chr7_2:1835389-1835408 | Msa1043640:intron | 30.0% |
| TCAAACTTCACTTTATGCTT+AGG | - | chr7_2:1835563-1835582 | Msa1043640:intron | 30.0% | |
| TTGCGAAGTCAAATTTAAGT+GGG | - | chr7_2:1835648-1835667 | Msa1043640:intron | 30.0% | |
| ACATTATCCCCAATAATAGT+AGG | + | chr7_2:1835683-1835702 | None:intergenic | 30.0% | |
| ! | TGAGTCTGTGAGTAATATTT+TGG | - | chr7_2:1835712-1835731 | Msa1043640:intron | 30.0% |
| !! | CAAATTTTAACACCCGTTAA+AGG | + | chr7_2:1835765-1835784 | None:intergenic | 30.0% |
| TATATGCGATTATGTGTGTT+CGG | - | chr7_2:1835970-1835989 | Msa1043640:intron | 30.0% | |
| CATACGTGATATACTTACTA+TGG | + | chr7_2:1836570-1836589 | None:intergenic | 30.0% | |
| AGATGTTATCCTTAATATGC+GGG | - | chr7_2:1836779-1836798 | Msa1043640:intron | 30.0% | |
| TAATTTATGCCCGCATATTA+AGG | + | chr7_2:1836791-1836810 | None:intergenic | 30.0% | |
| !! | CACATACCATTTTTCAAAGA+CGG | + | chr7_2:1836848-1836867 | None:intergenic | 30.0% |
| !!! | AGTTTTAACTGTAGAGAAGA+TGG | - | chr7_2:1836915-1836934 | Msa1043640:CDS | 30.0% |
| AATGTCATCTTATGTGACTT+TGG | - | chr7_2:1836941-1836960 | Msa1043640:CDS | 30.0% | |
| TTATCCTTATTAAGTGGGAA+TGG | - | chr7_2:1837252-1837271 | Msa1043640:intron | 30.0% | |
| AAAACCATTCCCACTTAATA+AGG | + | chr7_2:1837259-1837278 | None:intergenic | 30.0% | |
| ! | GCATACAATTTTGCAAAGAT+GGG | + | chr7_2:1837313-1837332 | None:intergenic | 30.0% |
| ACCAATTCGATAAAAATCTG+AGG | - | chr7_2:1837363-1837382 | Msa1043640:intron | 30.0% | |
| ! | ACCTCAGATTTTTATCGAAT+TGG | + | chr7_2:1837367-1837386 | None:intergenic | 30.0% |
| CGTTATCACTGTAGAAAATA+TGG | - | chr7_2:1837387-1837406 | Msa1043640:intron | 30.0% | |
| TGGTTGAATCTTATTCGATT+TGG | - | chr7_2:1837407-1837426 | Msa1043640:intron | 30.0% | |
| CTTCTTCCTATTGTATACTT+GGG | + | chr7_2:1837491-1837510 | None:intergenic | 30.0% | |
| ACTTCTTCCTATTGTATACT+TGG | + | chr7_2:1837492-1837511 | None:intergenic | 30.0% | |
| AGTGGGAACAATAAAGAATA+GGG | - | chr7_2:1837521-1837540 | Msa1043640:intron | 30.0% | |
| ATAAAGGAGTCCATTATGTT+TGG | - | chr7_2:1837643-1837662 | Msa1043640:intron | 30.0% | |
| TAAAGGAGTCCATTATGTTT+GGG | - | chr7_2:1837644-1837663 | Msa1043640:intron | 30.0% | |
| ! | TAAGCTTTTCCCAAACATAA+TGG | + | chr7_2:1837656-1837675 | None:intergenic | 30.0% |
| ATTATGTTTGGGAAAAGCTT+AGG | - | chr7_2:1837655-1837674 | Msa1043640:intron | 30.0% | |
| TATTTCAGTTCGGATAATTG+AGG | + | chr7_2:1837735-1837754 | None:intergenic | 30.0% | |
| TAGCTATAGGACTATTTGTT+AGG | + | chr7_2:1837780-1837799 | None:intergenic | 30.0% | |
| ACAAATAGTCCTATAGCTAA+AGG | - | chr7_2:1837781-1837800 | Msa1043640:intron | 30.0% | |
| GAGTACATGATATGAAGTTA+TGG | - | chr7_2:1837840-1837859 | Msa1043640:intron | 30.0% | |
| ! | TGCAAATATAGGCAATTTTG+TGG | + | chr7_2:1838054-1838073 | None:intergenic | 30.0% |
| ACAAAATTGCCTATATTTGC+AGG | - | chr7_2:1838053-1838072 | Msa1043640:intron | 30.0% | |
| TGATGAAATTGAGTTTGAGA+AGG | - | chr7_2:1838203-1838222 | Msa1043640:intron | 30.0% | |
| ! | AAACCTTTGTTTGTTTAGGT+AGG | + | chr7_2:1838326-1838345 | None:intergenic | 30.0% |
| ! | TCTTTAAAGATCTCATTGTG+TGG | + | chr7_2:1838349-1838368 | None:intergenic | 30.0% |
| TTTGTTCAAATTCATGGAAG+AGG | - | chr7_2:1838419-1838438 | Msa1043640:intron | 30.0% | |
| TTGTTCAAATTCATGGAAGA+GGG | - | chr7_2:1838420-1838439 | Msa1043640:intron | 30.0% | |
| !! | GGGACATGTTTGTTATTATT+GGG | + | chr7_2:1838459-1838478 | None:intergenic | 30.0% |
| !! | TGGGACATGTTTGTTATTAT+TGG | + | chr7_2:1838460-1838479 | None:intergenic | 30.0% |
| GATAGCAACTACAAATATTG+TGG | + | chr7_2:1838494-1838513 | None:intergenic | 30.0% | |
| CTGATGACCAAAATAATATC+TGG | + | chr7_2:1838630-1838649 | None:intergenic | 30.0% | |
| TACTTTCCGCTTATTCATTC+GGG | + | chr7_2:1833395-1833414 | None:intergenic | 35.0% | |
| GTACTTTCCGCTTATTCATT+CGG | + | chr7_2:1833396-1833415 | None:intergenic | 35.0% | |
| !! | ATGAATAAGCGGAAAGTACT+AGG | - | chr7_2:1833397-1833416 | Msa1043640:three_prime_UTR | 35.0% |
| GAATAGGTGAAGAAGGAAAA+TGG | + | chr7_2:1833472-1833491 | None:intergenic | 35.0% | |
| GATTCAGAAGAATTTCTCTG+TGG | + | chr7_2:1833502-1833521 | None:intergenic | 35.0% | |
| TTCGATGGAGAATTCGAATT+TGG | + | chr7_2:1833537-1833556 | None:intergenic | 35.0% | |
| TTCGAATTCTCCATCGAAAA+TGG | - | chr7_2:1833539-1833558 | Msa1043640:three_prime_UTR | 35.0% | |
| TCGAATTCTCCATCGAAAAT+GGG | - | chr7_2:1833540-1833559 | Msa1043640:three_prime_UTR | 35.0% | |
| !! | CAATATACAGCGTTGGATTT+TGG | - | chr7_2:1833577-1833596 | Msa1043640:three_prime_UTR | 35.0% |
| AGTTTATGATTGCAGTGTAG+TGG | - | chr7_2:1833930-1833949 | Msa1043640:CDS | 35.0% | |
| GTTTATGATTGCAGTGTAGT+GGG | - | chr7_2:1833931-1833950 | Msa1043640:CDS | 35.0% | |
| GGAGAATTTATGTAAGATCG+TGG | - | chr7_2:1834027-1834046 | Msa1043640:CDS | 35.0% | |
| TGGTATAGTTGAAACTCCTA+GGG | - | chr7_2:1834047-1834066 | Msa1043640:CDS | 35.0% | |
| ! | AAAAACTGTGTTGTTGAGCT+TGG | - | chr7_2:1834160-1834179 | Msa1043640:intron | 35.0% |
| AAAGATTTATGGTTGGAGAG+TGG | - | chr7_2:1834206-1834225 | Msa1043640:intron | 35.0% | |
| TTTGTAGGTTTAGGTCTGAT+TGG | - | chr7_2:1834459-1834478 | Msa1043640:intron | 35.0% | |
| TCATACAGTTGAAACACTTG+AGG | + | chr7_2:1834719-1834738 | None:intergenic | 35.0% | |
| AAGTAGTTCCTTCTTTGTTG+AGG | - | chr7_2:1834804-1834823 | Msa1043640:intron | 35.0% | |
| !! | GTAGTGTTGATTGATGCATT+TGG | - | chr7_2:1834852-1834871 | Msa1043640:intron | 35.0% |
| TGTTTGGTCATTATCTTGCT+AGG | - | chr7_2:1834910-1834929 | Msa1043640:intron | 35.0% | |
| CTGGTGGAAAAATGGTTTAA+TGG | - | chr7_2:1835040-1835059 | Msa1043640:intron | 35.0% | |
| GCTCTTTCACTTTACCAATT+AGG | - | chr7_2:1835287-1835306 | Msa1043640:intron | 35.0% | |
| GTTGCGAAGTCAAATTTAAG+TGG | - | chr7_2:1835647-1835666 | Msa1043640:intron | 35.0% | |
| GAAGTCAAATTTAAGTGGGA+AGG | - | chr7_2:1835652-1835671 | Msa1043640:intron | 35.0% | |
| !! | AAGGTGTTGCCTACTATTAT+TGG | - | chr7_2:1835671-1835690 | Msa1043640:intron | 35.0% |
| ! | AGGTGTTGCCTACTATTATT+GGG | - | chr7_2:1835672-1835691 | Msa1043640:intron | 35.0% |
| ATTGGGGATAATGTTACTGT+AGG | - | chr7_2:1835689-1835708 | Msa1043640:intron | 35.0% | |
| ! | CTTGTAAATTTAGAGCTTCG+TGG | - | chr7_2:1836739-1836758 | Msa1043640:intron | 35.0% |
| ! | TAAATTTAGAGCTTCGTGGA+CGG | - | chr7_2:1836743-1836762 | Msa1043640:intron | 35.0% |
| AAACATTCGAGAGAGAATTG+AGG | - | chr7_2:1836891-1836910 | Msa1043640:CDS | 35.0% | |
| CACTAGTACAAGATAGTGTT+GGG | - | chr7_2:1836989-1837008 | Msa1043640:CDS | 35.0% | |
| ! | CGCATACAATTTTGCAAAGA+TGG | + | chr7_2:1837314-1837333 | None:intergenic | 35.0% |
| AATTGTATGCGAGACAAAAC+AGG | - | chr7_2:1837323-1837342 | Msa1043640:intron | 35.0% | |
| ! | TCTAACATTTTCCTCCTTAC+GGG | + | chr7_2:1837458-1837477 | None:intergenic | 35.0% |
| ! | GTCTAACATTTTCCTCCTTA+CGG | + | chr7_2:1837459-1837478 | None:intergenic | 35.0% |
| CTATTGTATACTTGGGTAAC+TGG | + | chr7_2:1837484-1837503 | None:intergenic | 35.0% | |
| CAGTTACCCAAGTATACAAT+AGG | - | chr7_2:1837482-1837501 | Msa1043640:intron | 35.0% | |
| GAGTGGGAACAATAAAGAAT+AGG | - | chr7_2:1837520-1837539 | Msa1043640:intron | 35.0% | |
| TTAACAGAACATGTGAGAAC+TGG | - | chr7_2:1837616-1837635 | Msa1043640:intron | 35.0% | |
| TAACAGAACATGTGAGAACT+GGG | - | chr7_2:1837617-1837636 | Msa1043640:intron | 35.0% | |
| TATTCTTTAATTCCTCGCAC+TGG | - | chr7_2:1837702-1837721 | Msa1043640:intron | 35.0% | |
| !! | GGTATGTGATTGTTGTTTGT+GGG | - | chr7_2:1837906-1837925 | Msa1043640:intron | 35.0% |
| ATTGCCTATATTTGCAGGTT+TGG | - | chr7_2:1838058-1838077 | Msa1043640:intron | 35.0% | |
| TTGCCTATATTTGCAGGTTT+GGG | - | chr7_2:1838059-1838078 | Msa1043640:intron | 35.0% | |
| TGCAAGGTTACTGTAATTGA+TGG | + | chr7_2:1838151-1838170 | None:intergenic | 35.0% | |
| CTCAATTTCATCAAAAGGCT+TGG | + | chr7_2:1838196-1838215 | None:intergenic | 35.0% | |
| TGTTTAGGTAGGACATTATC+TGG | + | chr7_2:1838315-1838334 | None:intergenic | 35.0% | |
| TGTCCTACCTAAACAAACAA+AGG | - | chr7_2:1838320-1838339 | Msa1043640:intron | 35.0% | |
| ! | GTGGAAACCTTTGTTTGTTT+AGG | + | chr7_2:1838330-1838349 | None:intergenic | 35.0% |
| TATTGTGGAGCTATTGATCT+GGG | + | chr7_2:1838479-1838498 | None:intergenic | 35.0% | |
| ATATTGTGGAGCTATTGATC+TGG | + | chr7_2:1838480-1838499 | None:intergenic | 35.0% | |
| TTTGTAGTTGCTATCTACTC+TGG | - | chr7_2:1838499-1838518 | Msa1043640:CDS | 35.0% | |
| TAGGTGAAGAAGGAAAATGG+TGG | + | chr7_2:1833469-1833488 | None:intergenic | 40.0% | |
| ! | TGTGATGGAATAGGTGAAGA+AGG | + | chr7_2:1833479-1833498 | None:intergenic | 40.0% |
| AGAATTTCTCTGTGGTGTGA+TGG | + | chr7_2:1833494-1833513 | None:intergenic | 40.0% | |
| GCTGTATATTGCTCTTCCTA+GGG | + | chr7_2:1833568-1833587 | None:intergenic | 40.0% | |
| ! | GGATTTTGGATTCGAGAAAC+TGG | - | chr7_2:1833591-1833610 | Msa1043640:three_prime_UTR | 40.0% |
| GGAAGTAGTAGTTTCCTTGA+AGG | + | chr7_2:1833644-1833663 | None:intergenic | 40.0% | |
| AAAGTGACTAACGCTGTTCT+TGG | + | chr7_2:1833665-1833684 | None:intergenic | 40.0% | |
| TTGGAAGCTCAGCGAAATAA+TGG | - | chr7_2:1833840-1833859 | Msa1043640:CDS | 40.0% | |
| TGGAAGCTCAGCGAAATAAT+GGG | - | chr7_2:1833841-1833860 | Msa1043640:CDS | 40.0% | |
| GTGGTATAGTTGAAACTCCT+AGG | - | chr7_2:1834046-1834065 | Msa1043640:CDS | 40.0% | |
| ! | TGTGTTGTTGAGCTTGGTAT+TGG | - | chr7_2:1834166-1834185 | Msa1043640:intron | 40.0% |
| CATGCTTTCATATGGACTTC+AGG | - | chr7_2:1834552-1834571 | Msa1043640:intron | 40.0% | |
| AATGTGAACATCACCGATGA+CGG | + | chr7_2:1835223-1835242 | None:intergenic | 40.0% | |
| AGAGGATCATCCATTTGGTA+TGG | - | chr7_2:1835246-1835265 | Msa1043640:intron | 40.0% | |
| CATGACACATCCATACCAAA+TGG | + | chr7_2:1835259-1835278 | None:intergenic | 40.0% | |
| GATGTGAACAACATCAGTGT+TGG | - | chr7_2:1835587-1835606 | Msa1043640:intron | 40.0% | |
| ! | AACAACATCAGTGTTGGAAG+TGG | - | chr7_2:1835593-1835612 | Msa1043640:intron | 40.0% |
| GAACATTCAGGATAACTCCT+TGG | - | chr7_2:1835619-1835638 | Msa1043640:intron | 40.0% | |
| ! | GGTGTTGCCTACTATTATTG+GGG | - | chr7_2:1835673-1835692 | Msa1043640:intron | 40.0% |
| ACGGGTGTTAAAATTTGCAC+TGG | - | chr7_2:1835768-1835787 | Msa1043640:intron | 40.0% | |
| CGGGTGTTAAAATTTGCACT+GGG | - | chr7_2:1835769-1835788 | Msa1043640:intron | 40.0% | |
| TGTTAAAATTTGCACTGGGC+AGG | - | chr7_2:1835773-1835792 | Msa1043640:intron | 40.0% | |
| ! | GATGAGGCATTTGTTGGTAT+GGG | - | chr7_2:1835830-1835849 | Msa1043640:intron | 40.0% |
| TGTTGTTGAGAAACATGCCA+TGG | - | chr7_2:1835874-1835893 | Msa1043640:intron | 40.0% | |
| GTATGTGTGTGTACATGTTC+AGG | - | chr7_2:1835947-1835966 | Msa1043640:intron | 40.0% | |
| GCACTAGTACAAGATAGTGT+TGG | - | chr7_2:1836988-1837007 | Msa1043640:CDS | 40.0% | |
| TTGTATACTTGGCCAACTGA+TGG | + | chr7_2:1837015-1837034 | None:intergenic | 40.0% | |
| CAGTTGGCCAAGTATACAAT+AGG | - | chr7_2:1837016-1837035 | Msa1043640:intron | 40.0% | |
| ! | AAAAGAGCACAAGCAATGAG+AGG | - | chr7_2:1837043-1837062 | Msa1043640:intron | 40.0% |
| ! | AAAGAGCACAAGCAATGAGA+GGG | - | chr7_2:1837044-1837063 | Msa1043640:intron | 40.0% |
| ! | TTTAGAGCAGTTTGCAAGAC+TGG | - | chr7_2:1837206-1837225 | Msa1043640:intron | 40.0% |
| TTGTATACTTGGGTAACTGG+TGG | + | chr7_2:1837481-1837500 | None:intergenic | 40.0% | |
| GAAGAAGTCAACTAGAGAGT+GGG | - | chr7_2:1837504-1837523 | Msa1043640:intron | 40.0% | |
| !! | TAACCGAATGTTGATGGTTG+AGG | - | chr7_2:1837567-1837586 | Msa1043640:intron | 40.0% |
| !! | AACCGAATGTTGATGGTTGA+GGG | - | chr7_2:1837568-1837587 | Msa1043640:intron | 40.0% |
| TGTGAGAACTGGGAAGATAA+AGG | - | chr7_2:1837627-1837646 | Msa1043640:intron | 40.0% | |
| TTTGGGAAAAGCTTAGGAAG+AGG | - | chr7_2:1837661-1837680 | Msa1043640:intron | 40.0% | |
| !! | GGGTATGTGATTGTTGTTTG+TGG | - | chr7_2:1837905-1837924 | Msa1043640:intron | 40.0% |
| CAACAAAAGTAGACCATTCG+TGG | - | chr7_2:1837938-1837957 | Msa1043640:intron | 40.0% | |
| CTATCACAATACACCACGAA+TGG | + | chr7_2:1837954-1837973 | None:intergenic | 40.0% | |
| ! | ACTGTAATTGATGGCTGACT+GGG | + | chr7_2:1838142-1838161 | None:intergenic | 40.0% |
| ! | TACTGTAATTGATGGCTGAC+TGG | + | chr7_2:1838143-1838162 | None:intergenic | 40.0% |
| CAATTACAGTAACCTTGCAC+AGG | - | chr7_2:1838152-1838171 | Msa1043640:intron | 40.0% | |
| CTTTACGCGCAAACTTCTTT+CGG | + | chr7_2:1838233-1838252 | None:intergenic | 40.0% | |
| TTATCTGGAAGAATGAGCTC+TGG | + | chr7_2:1838300-1838319 | None:intergenic | 40.0% | |
| ! | GTTGCTATCTACTCTGGAAA+AGG | - | chr7_2:1838505-1838524 | Msa1043640:CDS | 40.0% |
| CATGTGAAACTCACATGCAT+TGG | + | chr7_2:1838578-1838597 | None:intergenic | 40.0% | |
| TGACCTCCCGAATGAATAAG+CGG | - | chr7_2:1833386-1833405 | Msa1043640:three_prime_UTR | 45.0% | |
| TTTCCGCTTATTCATTCGGG+AGG | + | chr7_2:1833392-1833411 | None:intergenic | 45.0% | |
| ! | AAATGGTGGTGAGTGGAAGA+AGG | + | chr7_2:1833455-1833474 | None:intergenic | 45.0% |
| ! | AGAAGGAAAATGGTGGTGAG+TGG | + | chr7_2:1833462-1833481 | None:intergenic | 45.0% |
| ! | TCTCTGTGGTGTGATGGAAT+AGG | + | chr7_2:1833488-1833507 | None:intergenic | 45.0% |
| CGCTGTATATTGCTCTTCCT+AGG | + | chr7_2:1833569-1833588 | None:intergenic | 45.0% | |
| GGAAGAGCAATATACAGCGT+TGG | - | chr7_2:1833570-1833589 | Msa1043640:three_prime_UTR | 45.0% | |
| CTCCTAGGGAAAATTACTGC+AGG | - | chr7_2:1834061-1834080 | Msa1043640:intron | 45.0% | |
| GTCATCGGTGATGTTCACAT+TGG | - | chr7_2:1835222-1835241 | Msa1043640:intron | 45.0% | |
| TTGGCAGAGGATCATCCATT+TGG | - | chr7_2:1835241-1835260 | Msa1043640:intron | 45.0% | |
| TGGTATGGATGTGTCATGAG+AGG | - | chr7_2:1835261-1835280 | Msa1043640:intron | 45.0% | |
| TGGAAGTGGAACGAACATTC+AGG | - | chr7_2:1835607-1835626 | Msa1043640:intron | 45.0% | |
| CTTACATGGTTGCACTGTTG+AGG | - | chr7_2:1835808-1835827 | Msa1043640:intron | 45.0% | |
| ! | GTTGAGGATGAGGCATTTGT+TGG | - | chr7_2:1835824-1835843 | Msa1043640:intron | 45.0% |
| ! | GGATGAGGCATTTGTTGGTA+TGG | - | chr7_2:1835829-1835848 | Msa1043640:intron | 45.0% |
| CCGTGAATTCTGTCTCACAA+GGG | + | chr7_2:1835912-1835931 | None:intergenic | 45.0% | |
| CCCTTGTGAGACAGAATTCA+CGG | - | chr7_2:1835909-1835928 | Msa1043640:intron | 45.0% | |
| TCCGTGAATTCTGTCTCACA+AGG | + | chr7_2:1835913-1835932 | None:intergenic | 45.0% | |
| CAGAATTCACGGATTCCATC+CGG | - | chr7_2:1835920-1835939 | Msa1043640:intron | 45.0% | |
| TGTACACACACATACCTCTC+CGG | + | chr7_2:1835942-1835961 | None:intergenic | 45.0% | |
| TGCGATTATGTGTGTTCGGT+TGG | - | chr7_2:1835974-1835993 | Msa1043640:intron | 45.0% | |
| GCGATTATGTGTGTTCGGTT+GGG | - | chr7_2:1835975-1835994 | Msa1043640:intron | 45.0% | |
| ! | AGTGTCGAGCAAGAATACAG+TGG | - | chr7_2:1837078-1837097 | Msa1043640:intron | 45.0% |
| GTGTCGAGCAAGAATACAGT+GGG | - | chr7_2:1837079-1837098 | Msa1043640:intron | 45.0% | |
| GGAAGAAGTCAACTAGAGAG+TGG | - | chr7_2:1837503-1837522 | Msa1043640:intron | 45.0% | |
| CTCCCTCAACCATCAACATT+CGG | + | chr7_2:1837573-1837592 | None:intergenic | 45.0% | |
| ATGGTTGAGGGAGTAACGAT+GGG | - | chr7_2:1837580-1837599 | Msa1043640:intron | 45.0% | |
| GGAAAAGCTTAGGAAGAGGT+GGG | - | chr7_2:1837665-1837684 | Msa1043640:intron | 45.0% | |
| AGTCCTATAGCTAAAGGCAG+AGG | - | chr7_2:1837787-1837806 | Msa1043640:intron | 45.0% | |
| GTCCTATAGCTAAAGGCAGA+GGG | - | chr7_2:1837788-1837807 | Msa1043640:intron | 45.0% | |
| !! | TGGTGTTGATCGATCCATGT+TGG | - | chr7_2:1837860-1837879 | Msa1043640:intron | 45.0% |
| ! | ACTGCCTCTGGTGATGAAAA+GGG | - | chr7_2:1837885-1837904 | Msa1043640:intron | 45.0% |
| ! | CATACCCTTTTCATCACCAG+AGG | + | chr7_2:1837892-1837911 | None:intergenic | 45.0% |
| CTGCCCAAACCTGCAAATAT+AGG | + | chr7_2:1838065-1838084 | None:intergenic | 45.0% | |
| CTATATTTGCAGGTTTGGGC+AGG | - | chr7_2:1838063-1838082 | Msa1043640:intron | 45.0% | |
| AGCTTCCTCAAGAACTTTGC+CGG | + | chr7_2:1838093-1838112 | None:intergenic | 45.0% | |
| ! | GAGGAGTATGACTCAATGCT+GGG | - | chr7_2:1838255-1838274 | Msa1043640:intron | 45.0% |
| GGAAAAGGAAAGTTCCCTGA+AGG | - | chr7_2:1838520-1838539 | Msa1043640:CDS | 45.0% | |
| TCCACATACACGATCCTTCA+GGG | + | chr7_2:1838537-1838556 | None:intergenic | 45.0% | |
| ATCCACATACACGATCCTTC+AGG | + | chr7_2:1838538-1838557 | None:intergenic | 45.0% | |
| !!! | AAATCATTTTTTATTTTTTT+TGG | - | chr7_2:1834103-1834122 | Msa1043640:intron | 5.0% |
| !!! | AATCATTTTTTATTTTTTTT+GGG | - | chr7_2:1834104-1834123 | Msa1043640:intron | 5.0% |
| ! | CCTAGGGTTCCCATTTTCGA+TGG | + | chr7_2:1833552-1833571 | None:intergenic | 50.0% |
| CCATCGAAAATGGGAACCCT+AGG | - | chr7_2:1833549-1833568 | Msa1043640:three_prime_UTR | 50.0% | |
| ! | GGCCTGCAGTAATTTTCCCT+AGG | + | chr7_2:1834066-1834085 | None:intergenic | 50.0% |
| GGTGATGTTCACATTGGCAG+AGG | - | chr7_2:1835228-1835247 | Msa1043640:intron | 50.0% | |
| TGGTTGCACTGTTGAGGATG+AGG | - | chr7_2:1835814-1835833 | Msa1043640:intron | 50.0% | |
| TGGTATGGGTGCAACACTAC+TGG | - | chr7_2:1835844-1835863 | Msa1043640:intron | 50.0% | |
| ATGGGTGCAACACTACTGGA+TGG | - | chr7_2:1835848-1835867 | Msa1043640:intron | 50.0% | |
| AAACATGCCATGGTTGCTGC+TGG | - | chr7_2:1835884-1835903 | Msa1043640:intron | 50.0% | |
| ! | GATAGTGTTGGGCCATCAGT+TGG | - | chr7_2:1837000-1837019 | Msa1043640:intron | 50.0% |
| ACAAGCAATGAGAGGGAGAG+TGG | - | chr7_2:1837051-1837070 | Msa1043640:intron | 50.0% | |
| CAAGCAATGAGAGGGAGAGT+GGG | - | chr7_2:1837052-1837071 | Msa1043640:intron | 50.0% | |
| GATGGTTGAGGGAGTAACGA+TGG | - | chr7_2:1837579-1837598 | Msa1043640:intron | 50.0% | |
| TGGTTGAGGGAGTAACGATG+GGG | - | chr7_2:1837581-1837600 | Msa1043640:intron | 50.0% | |
| GGGAAAAGCTTAGGAAGAGG+TGG | - | chr7_2:1837664-1837683 | Msa1043640:intron | 50.0% | |
| TGAGGAATTTGACCAGTGCG+AGG | + | chr7_2:1837717-1837736 | None:intergenic | 50.0% | |
| CTCCCTCTGCCTTTAGCTAT+AGG | + | chr7_2:1837793-1837812 | None:intergenic | 50.0% | |
| ! | GACTGCCTCTGGTGATGAAA+AGG | - | chr7_2:1837884-1837903 | Msa1043640:intron | 50.0% |
| GCAATCCGGCAAAGTTCTTG+AGG | - | chr7_2:1838085-1838104 | Msa1043640:intron | 50.0% | |
| ! | GCTTGGCATTTTCAGCTGCA+TGG | + | chr7_2:1838179-1838198 | None:intergenic | 50.0% |
| GAAGTTTGCGCGTAAAGACG+AGG | - | chr7_2:1838236-1838255 | Msa1043640:intron | 50.0% | |
| ! | CGAGGAGTATGACTCAATGC+TGG | - | chr7_2:1838254-1838273 | Msa1043640:intron | 50.0% |
| !! | CTGGAAGAATGAGCTCTGGA+GGG | + | chr7_2:1838296-1838315 | None:intergenic | 50.0% |
| ! | TCTGGAAGAATGAGCTCTGG+AGG | + | chr7_2:1838297-1838316 | None:intergenic | 50.0% |
| TCCCTGAAGGATCGTGTATG+TGG | - | chr7_2:1838533-1838552 | Msa1043640:CDS | 50.0% | |
| GGACAAGCCATTGATCGCCT+CGG | - | chr7_2:1833612-1833631 | Msa1043640:three_prime_UTR | 55.0% | |
| TTCCTTGAAGGCGAGAACCG+AGG | + | chr7_2:1833632-1833651 | None:intergenic | 55.0% | |
| ! | GTGAACATCACCGATGACGG+AGG | + | chr7_2:1835220-1835239 | None:intergenic | 55.0% |
| TGACTTCGCAACGTGCACCA+AGG | + | chr7_2:1835639-1835658 | None:intergenic | 55.0% | |
| GGTCACAGTGCGGTCTTACA+TGG | - | chr7_2:1835794-1835813 | Msa1043640:intron | 55.0% | |
| TTCACGGATTCCATCCGGAG+AGG | - | chr7_2:1835925-1835944 | Msa1043640:intron | 55.0% | |
| CACACACATACCTCTCCGGA+TGG | + | chr7_2:1835938-1835957 | None:intergenic | 55.0% | |
| !! | AGCTTCGTGGACGGATTGCA+AGG | - | chr7_2:1836752-1836771 | Msa1043640:intron | 55.0% |
| ! | GATGTCTTGAAGCGCCCGTA+AGG | - | chr7_2:1837441-1837460 | Msa1043640:intron | 55.0% |
| !! | TCCATGTTGGTGACTGCCTC+TGG | - | chr7_2:1837873-1837892 | Msa1043640:intron | 55.0% |
| ACCAGAGGCAGTCACCAACA+TGG | + | chr7_2:1837877-1837896 | None:intergenic | 55.0% | |
| GCGAGAACCGAGGCGATCAA+TGG | + | chr7_2:1833622-1833641 | None:intergenic | 60.0% | |
| !! | ACCGATGACGGAGGCACTTG+GGG | + | chr7_2:1835211-1835230 | None:intergenic | 60.0% |
| !! | CACCGATGACGGAGGCACTT+GGG | + | chr7_2:1835212-1835231 | None:intergenic | 60.0% |
| !! | TCACCGATGACGGAGGCACT+TGG | + | chr7_2:1835213-1835232 | None:intergenic | 60.0% |
| !! | AAGGGCACCAGCAGCAACCA+TGG | + | chr7_2:1835894-1835913 | None:intergenic | 60.0% |
| ! | GTCTTGAAGCGCCCGTAAGG+AGG | - | chr7_2:1837444-1837463 | Msa1043640:intron | 60.0% |
| GCAGGTTTGGGCAGGCAATC+CGG | - | chr7_2:1838071-1838090 | Msa1043640:intron | 60.0% | |
| CAGCTGCATGGACCTGTGCA+AGG | + | chr7_2:1838167-1838186 | None:intergenic | 60.0% | |
| CGCCTCGGTTCTCGCCTTCA+AGG | - | chr7_2:1833627-1833646 | Msa1043640:three_prime_UTR | 65.0% | |
| GCCCCAAGTGCCTCCGTCAT+CGG | - | chr7_2:1835207-1835226 | Msa1043640:intron | 65.0% | |
| GCACTGGGCAGGTCACAGTG+CGG | - | chr7_2:1835784-1835803 | Msa1043640:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 1833380 | 1838772 | 1833380 | ID=Msa1043640;Name=Msa1043640 |
| chr7_2 | mRNA | 1833380 | 1838772 | 1833380 | ID=Msa1043640-mRNA-1;Parent=Msa1043640;Name=Msa1043640-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|1|1|5|416|272 |
| chr7_2 | exon | 1833380 | 1834077 | 1833380 | ID=Msa1043640-mRNA-1:exon:375;Parent=Msa1043640-mRNA-1 |
| chr7_2 | exon | 1836206 | 1836357 | 1836206 | ID=Msa1043640-mRNA-1:exon:374;Parent=Msa1043640-mRNA-1 |
| chr7_2 | exon | 1836442 | 1836567 | 1836442 | ID=Msa1043640-mRNA-1:exon:373;Parent=Msa1043640-mRNA-1 |
| chr7_2 | exon | 1836870 | 1837013 | 1836870 | ID=Msa1043640-mRNA-1:exon:372;Parent=Msa1043640-mRNA-1 |
| chr7_2 | exon | 1838480 | 1838772 | 1838480 | ID=Msa1043640-mRNA-1:exon:371;Parent=Msa1043640-mRNA-1 |
| chr7_2 | five_prime_UTR | 1838595 | 1838772 | 1838595 | ID=Msa1043640-mRNA-1:five_prime_utr;Parent=Msa1043640-mRNA-1 |
| chr7_2 | CDS | 1838480 | 1838594 | 1838480 | ID=Msa1043640-mRNA-1:cds;Parent=Msa1043640-mRNA-1 |
| chr7_2 | CDS | 1836870 | 1837013 | 1836870 | ID=Msa1043640-mRNA-1:cds;Parent=Msa1043640-mRNA-1 |
| chr7_2 | CDS | 1836442 | 1836567 | 1836442 | ID=Msa1043640-mRNA-1:cds;Parent=Msa1043640-mRNA-1 |
| chr7_2 | CDS | 1836206 | 1836357 | 1836206 | ID=Msa1043640-mRNA-1:cds;Parent=Msa1043640-mRNA-1 |
| chr7_2 | CDS | 1833796 | 1834077 | 1833796 | ID=Msa1043640-mRNA-1:cds;Parent=Msa1043640-mRNA-1 |
| chr7_2 | three_prime_UTR | 1833380 | 1833795 | 1833380 | ID=Msa1043640-mRNA-1:three_prime_utr;Parent=Msa1043640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
