Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146410 | XP_013466129.1 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146410 | sp|Q9FWR5|GCA1_ARATH | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.01e-175 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146410 | I3SYK2 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003860 | Msa0146410 | 0.881041 | 3.337631e-70 | -8.615850e-47 |
| Msa0146410 | Msa1043640 | 0.891873 | 2.667329e-74 | -8.615850e-47 |
| Msa0146410 | Msa1374160 | 0.871802 | 5.175366e-67 | -8.615850e-47 |
| Msa0146410 | Msa1382660 | 0.871611 | 5.989855e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146410 | MtrunA17_Chr1g0155361 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Msa0146410 | MtrunA17_Chr3g0141721 | 84.701 | 268 | 40 | 1 | 1 | 268 | 1 | 267 | 2.71e-171 | 474 |
| Msa0146410 | MtrunA17_Chr5g0404561 | 79.336 | 271 | 54 | 2 | 1 | 270 | 1 | 270 | 1.40e-159 | 444 |
| Msa0146410 | MtrunA17_Chr8g0386291 | 36.792 | 212 | 127 | 2 | 17 | 228 | 37 | 241 | 3.83e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0146410 | AT1G19580.1 | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.05e-176 | 487 |
| Msa0146410 | AT1G47260.1 | 81.061 | 264 | 50 | 0 | 1 | 264 | 1 | 264 | 9.89e-167 | 462 |
| Msa0146410 | AT5G66510.1 | 74.340 | 265 | 59 | 3 | 1 | 265 | 1 | 256 | 4.92e-147 | 412 |
| Msa0146410 | AT5G66510.2 | 71.377 | 276 | 59 | 4 | 1 | 265 | 1 | 267 | 2.67e-143 | 403 |
| Msa0146410 | AT1G19580.2 | 88.827 | 179 | 20 | 0 | 1 | 179 | 1 | 179 | 7.84e-119 | 339 |
| Msa0146410 | AT5G63510.1 | 38.503 | 187 | 114 | 1 | 42 | 228 | 55 | 240 | 5.24e-41 | 142 |
| Msa0146410 | AT3G48680.1 | 37.968 | 187 | 115 | 1 | 42 | 228 | 59 | 244 | 1.95e-40 | 140 |
| Msa0146410 | AT5G63510.2 | 35.047 | 214 | 111 | 4 | 42 | 228 | 55 | 267 | 3.54e-35 | 127 |
| Msa0146410 | AT1G47420.1 | 51.163 | 86 | 29 | 1 | 1 | 86 | 1 | 73 | 1.40e-17 | 80.5 |
Find 117 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACATGTTTGTTATTAT+TGG | 0.144123 | 1_4:-6068201 | None:intergenic |
| CAATATACAGCGTTGGATTT+TGG | 0.184113 | 1_4:+6063315 | Msa0146410:CDS |
| TTTGATGGAGAATTCGAATT+TGG | 0.206832 | 1_4:-6063272 | None:intergenic |
| TTCATTCGGGAGGTCAATTT+CGG | 0.252936 | 1_4:-6063116 | None:intergenic |
| TTACGTTCCAGATATTATTT+TGG | 0.270771 | 1_4:+6068364 | Msa0146410:three_prime_UTR |
| AAGGTGTTGCCTACTATTAT+TGG | 0.284723 | 1_4:+6065415 | Msa0146410:CDS |
| AGGTGTTGCCTACTATTATT+GGG | 0.302756 | 1_4:+6065416 | Msa0146410:CDS |
| TTATTTGTTGTGAATTGATT+TGG | 0.309682 | 1_4:-6068440 | None:intergenic |
| AAAGTGACTAACGCTGTTCT+TGG | 0.312952 | 1_4:-6063400 | None:intergenic |
| TGTTTAGGTAGGACATTATC+TGG | 0.316419 | 1_4:-6068056 | None:intergenic |
| GGGACATGTTTGTTATTATT+GGG | 0.318660 | 1_4:-6068200 | None:intergenic |
| AGCTTCCTCAAGAACTTTGC+CGG | 0.334411 | 1_4:-6067834 | None:intergenic |
| CTTTACGCGCAAACTTCTTT+CGG | 0.336036 | 1_4:-6067974 | None:intergenic |
| TATTTGTTGTGAATTGATTT+GGG | 0.360728 | 1_4:-6068439 | None:intergenic |
| TCATTCGGGAGGTCAATTTC+GGG | 0.376065 | 1_4:-6063115 | None:intergenic |
| CTGATGACCAAAATAATATC+TGG | 0.379939 | 1_4:-6068371 | None:intergenic |
| TCAAACTCAATTTCATCAAA+AGG | 0.380051 | 1_4:-6067942 | None:intergenic |
| GAATAGGTGAAGAAGGAAAA+TGG | 0.384580 | 1_4:-6063207 | None:intergenic |
| CGCCTCGGTTCTCGCCTTCA+AGG | 0.386977 | 1_4:+6063365 | Msa0146410:CDS |
| GTGGAAACCTTTGTTTGTTT+AGG | 0.399925 | 1_4:-6068071 | None:intergenic |
| GGATGAGGCATTTGTTGGTA+TGG | 0.402155 | 1_4:+6065573 | Msa0146410:CDS |
| TTTGATGAACATATTTGATA+AGG | 0.410702 | 1_4:+6064896 | Msa0146410:CDS |
| CTCAATTTCATCAAAAGGCT+TGG | 0.413672 | 1_4:-6067937 | None:intergenic |
| TACTGTAATTGATGGCTGAC+TGG | 0.414279 | 1_4:-6067884 | None:intergenic |
| TGGAAGTGGAACGAACATTC+AGG | 0.417411 | 1_4:+6065351 | Msa0146410:CDS |
| ATCCACATACACGATCCTTC+AGG | 0.420689 | 1_4:-6068279 | None:intergenic |
| GCAGGTTTGGGCAGGCAATC+CGG | 0.427230 | 1_4:+6067815 | Msa0146410:intron |
| CGCTGTATATTGCTCTTCCT+AGG | 0.432752 | 1_4:-6063304 | None:intergenic |
| CTATATTTGCAGGTTTGGGC+AGG | 0.438052 | 1_4:+6067807 | Msa0146410:intron |
| ATATTGTGGAGCTATTGATC+TGG | 0.442749 | 1_4:-6068221 | None:intergenic |
| ATGAATAAGCGGAAAATACT+AGG | 0.443863 | 1_4:+6063134 | Msa0146410:five_prime_UTR |
| GGAAGTAGTAGTTTCCTTGA+AGG | 0.444566 | 1_4:-6063379 | None:intergenic |
| TTGGCAGAGGATCATCCATT+TGG | 0.451417 | 1_4:+6064982 | Msa0146410:CDS |
| TCACCGATGACGGAGGCACT+TGG | 0.455404 | 1_4:-6064951 | None:intergenic |
| GTTGCTATCTACTCTGGAAA+AGG | 0.457800 | 1_4:+6068249 | Msa0146410:three_prime_UTR |
| TTTGTAGTTGCTATCTACTC+TGG | 0.459816 | 1_4:+6068243 | Msa0146410:three_prime_UTR |
| AATGCATCTTTATCAACAAC+GGG | 0.459975 | 1_4:-6064921 | None:intergenic |
| ACATTATCCCCAATAATAGT+AGG | 0.462118 | 1_4:-6065424 | None:intergenic |
| CACCGATGACGGAGGCACTT+GGG | 0.479686 | 1_4:-6064950 | None:intergenic |
| GTTGAGGATGAGGCATTTGT+TGG | 0.479806 | 1_4:+6065568 | Msa0146410:CDS |
| CATGACACATCCATACCAAA+TGG | 0.491582 | 1_4:-6064997 | None:intergenic |
| GCCCCAAGTGCCTCCGTCAT+CGG | 0.493477 | 1_4:+6064948 | Msa0146410:CDS |
| CGAGGAGTATGACTCAATGC+TGG | 0.495730 | 1_4:+6067998 | Msa0146410:CDS |
| CCCTTGTGAGACAGAATTCA+CGG | 0.497709 | 1_4:+6065653 | Msa0146410:CDS |
| CTTTATAATAAGATGAAAGG+TGG | 0.500506 | 1_4:+6068409 | Msa0146410:three_prime_UTR |
| GTTGCGAAGTCAAATTTAAG+TGG | 0.500521 | 1_4:+6065391 | Msa0146410:CDS |
| TTTGTTCAAATTCATGGAAG+AGG | 0.507441 | 1_4:+6068163 | Msa0146410:three_prime_UTR |
| CAGAATTCACGGATTCCATC+CGG | 0.507689 | 1_4:+6065664 | Msa0146410:CDS |
| TGCAAGGTTACTGTAATTGA+TGG | 0.508085 | 1_4:-6067892 | None:intergenic |
| TTATCTGGAAGAATGAGCTC+TGG | 0.510631 | 1_4:-6068041 | None:intergenic |
| TGGTATGGGTGCAACACTAC+TGG | 0.514205 | 1_4:+6065588 | Msa0146410:CDS |
| TCCACATACACGATCCTTCA+GGG | 0.517962 | 1_4:-6068278 | None:intergenic |
| ACCGATGACGGAGGCACTTG+GGG | 0.523236 | 1_4:-6064949 | None:intergenic |
| TTGTTCAAATTCATGGAAGA+GGG | 0.524350 | 1_4:+6068164 | Msa0146410:three_prime_UTR |
| GCGAGAACCGAGGCGATCAA+TGG | 0.526580 | 1_4:-6063357 | None:intergenic |
| CATGTGAAACTCACATGCAT+TGG | 0.537464 | 1_4:-6068319 | None:intergenic |
| GGTCACAGTGCGGTCTTACA+TGG | 0.537571 | 1_4:+6065538 | Msa0146410:intron |
| TTGCTATCTACTCTGGAAAA+GGG | 0.543327 | 1_4:+6068250 | Msa0146410:three_prime_UTR |
| GCTGTATATTGCTCTTCCTA+GGG | 0.544124 | 1_4:-6063303 | None:intergenic |
| TTGCTTTATAATAAGATGAA+AGG | 0.546529 | 1_4:+6068406 | Msa0146410:three_prime_UTR |
| CAGCTGCATGGACCTGTGCA+AGG | 0.546560 | 1_4:-6067908 | None:intergenic |
| TCCCTGAAGGATCGTGTATG+TGG | 0.547029 | 1_4:+6068277 | Msa0146410:three_prime_UTR |
| TATTGTGGAGCTATTGATCT+GGG | 0.547920 | 1_4:-6068220 | None:intergenic |
| AAATGGTGGTGAGTGGAAGA+AGG | 0.549936 | 1_4:-6063190 | None:intergenic |
| AAACATGCCATGGTTGCTGC+TGG | 0.555478 | 1_4:+6065628 | Msa0146410:CDS |
| GATGAGGCATTTGTTGGTAT+GGG | 0.557130 | 1_4:+6065574 | Msa0146410:CDS |
| ATTGGGGATAATGTTACTGT+AGG | 0.557745 | 1_4:+6065433 | Msa0146410:CDS |
| GATAGCAACTACAAATATTG+TGG | 0.558085 | 1_4:-6068235 | None:intergenic |
| TTTATAATAAGATGAAAGGT+GGG | 0.558966 | 1_4:+6068410 | Msa0146410:three_prime_UTR |
| AAATGCATCTTTATCAACAA+CGG | 0.563384 | 1_4:-6064922 | None:intergenic |
| CACAAACATACCTCTCCGGA+TGG | 0.563502 | 1_4:-6065679 | None:intergenic |
| AGAGGATCATCCATTTGGTA+TGG | 0.566846 | 1_4:+6064987 | Msa0146410:CDS |
| TCTCTGTGGTGTGATGGAAT+AGG | 0.566944 | 1_4:-6063223 | None:intergenic |
| AGAATTTCTCTGTGGTGTGA+TGG | 0.568426 | 1_4:-6063229 | None:intergenic |
| AACAACATCAGTGTTGGAAG+TGG | 0.575912 | 1_4:+6065337 | Msa0146410:CDS |
| AAACCTTTGTTTGTTTAGGT+AGG | 0.577011 | 1_4:-6068067 | None:intergenic |
| CTTACATGGTTGCACTGTTG+AGG | 0.578504 | 1_4:+6065552 | Msa0146410:CDS |
| GGAAGAGCAATATACAGCGT+TGG | 0.581089 | 1_4:+6063308 | Msa0146410:CDS |
| ACTGTAATTGATGGCTGACT+GGG | 0.582150 | 1_4:-6067883 | None:intergenic |
| GAACATTCAGGATAACTCCT+TGG | 0.585092 | 1_4:+6065363 | Msa0146410:CDS |
| TGGTTGCACTGTTGAGGATG+AGG | 0.587457 | 1_4:+6065558 | Msa0146410:CDS |
| AATGTGAACATCACCGATGA+CGG | 0.591114 | 1_4:-6064961 | None:intergenic |
| AAGGGCACCAGCAGCAACCA+TGG | 0.591319 | 1_4:-6065635 | None:intergenic |
| TCTGGAAGAATGAGCTCTGG+AGG | 0.591755 | 1_4:-6068038 | None:intergenic |
| TTGCGAAGTCAAATTTAAGT+GGG | 0.594604 | 1_4:+6065392 | Msa0146410:CDS |
| GCAATCCGGCAAAGTTCTTG+AGG | 0.596618 | 1_4:+6067829 | Msa0146410:CDS |
| GAAGTCAAATTTAAGTGGGA+AGG | 0.601013 | 1_4:+6065396 | Msa0146410:CDS |
| TGTGATGGAATAGGTGAAGA+AGG | 0.604030 | 1_4:-6063214 | None:intergenic |
| GGTGATGTTCACATTGGCAG+AGG | 0.604788 | 1_4:+6064969 | Msa0146410:CDS |
| TGTACACAAACATACCTCTC+CGG | 0.605084 | 1_4:-6065683 | None:intergenic |
| GAGGAGTATGACTCAATGCT+GGG | 0.608575 | 1_4:+6067999 | Msa0146410:CDS |
| TCTTTAAAGATCTCATTGTG+TGG | 0.610119 | 1_4:-6068090 | None:intergenic |
| GGACAAGCCATTGATCGCCT+CGG | 0.617682 | 1_4:+6063350 | Msa0146410:CDS |
| TCCGTGAATTCTGTCTCACA+AGG | 0.619899 | 1_4:-6065654 | None:intergenic |
| GGAAAAGGGAAGTTCCCTGA+AGG | 0.620144 | 1_4:+6068264 | Msa0146410:three_prime_UTR |
| CAATTACAGTAACCTTGCAC+AGG | 0.620160 | 1_4:+6067896 | Msa0146410:CDS |
| AGAAGGAAAATGGTGGTGAG+TGG | 0.620505 | 1_4:-6063197 | None:intergenic |
| TGTCCTACCTAAACAAACAA+AGG | 0.621913 | 1_4:+6068064 | Msa0146410:CDS |
| TTTCCGCTTATTCATTCGGG+AGG | 0.622102 | 1_4:-6063126 | None:intergenic |
| TGACCTCCCGAATGAATAAG+CGG | 0.623321 | 1_4:+6063123 | Msa0146410:five_prime_UTR |
| CTGGAAGAATGAGCTCTGGA+GGG | 0.626080 | 1_4:-6068037 | None:intergenic |
| TGATGAAATTGAGTTTGAGA+AGG | 0.626270 | 1_4:+6067947 | Msa0146410:CDS |
| GATGTGAACAACATCAGTGT+TGG | 0.633059 | 1_4:+6065331 | Msa0146410:CDS |
| GAAGTTTGCGCGTAAAGACG+AGG | 0.633888 | 1_4:+6067980 | Msa0146410:CDS |
| GGTGTTGCCTACTATTATTG+GGG | 0.645236 | 1_4:+6065417 | Msa0146410:CDS |
| GTCATCGGTGATGTTCACAT+TGG | 0.648843 | 1_4:+6064963 | Msa0146410:CDS |
| TTCCTTGAAGGCGAGAACCG+AGG | 0.652401 | 1_4:-6063367 | None:intergenic |
| TGTTGTTGAGAAACATGCCA+TGG | 0.655725 | 1_4:+6065618 | Msa0146410:CDS |
| TTCACGGATTCCATCCGGAG+AGG | 0.692353 | 1_4:+6065669 | Msa0146410:CDS |
| ATGGGTGCAACACTACTGGA+TGG | 0.693665 | 1_4:+6065592 | Msa0146410:CDS |
| TGACTTCGCAACGTGCACCA+AGG | 0.699119 | 1_4:-6065380 | None:intergenic |
| GTGAACATCACCGATGACGG+AGG | 0.701387 | 1_4:-6064958 | None:intergenic |
| TGGTATGGATGTGTCATGAG+AGG | 0.706530 | 1_4:+6065002 | Msa0146410:CDS |
| CCGTGAATTCTGTCTCACAA+GGG | 0.725853 | 1_4:-6065653 | None:intergenic |
| GATTCAGAAGAATTTCTCTG+TGG | 0.740529 | 1_4:-6063237 | None:intergenic |
| GCACTGGGCAGGTCACAGTG+CGG | 0.741494 | 1_4:+6065528 | Msa0146410:intron |
| TAGGTGAAGAAGGAAAATGG+TGG | 0.746528 | 1_4:-6063204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCATATATTAAAATGT+TGG | + | chr1_4:6063506-6063525 | Msa0146410:intron | 10.0% |
| !!! | ATCATTTTTTATTTTTTTTG+GGG | + | chr1_4:6063846-6063865 | Msa0146410:intron | 10.0% |
| !! | AGATAAATTAAAGTAAATTT+GGG | - | chr1_4:6065982-6066001 | None:intergenic | 10.0% |
| !! | TAGATAAATTAAAGTAAATT+TGG | - | chr1_4:6065983-6066002 | None:intergenic | 10.0% |
| !! | ATTTAACATTATACAAAACA+GGG | - | chr1_4:6063828-6063847 | None:intergenic | 15.0% |
| !!! | TCATTTTTTATTTTTTTTGG+GGG | + | chr1_4:6063847-6063866 | Msa0146410:intron | 15.0% |
| !!! | TTCTTTTAAAAATAGTTTGT+AGG | + | chr1_4:6064185-6064204 | Msa0146410:intron | 15.0% |
| !!! | TTGATATGTTTTAATTTTCA+TGG | - | chr1_4:6064834-6064853 | None:intergenic | 15.0% |
| !! | AATATAATTTCAACAATACT+CGG | + | chr1_4:6066006-6066025 | Msa0146410:intron | 15.0% |
| !! | ATATTATACATCCAAAATAA+AGG | - | chr1_4:6066110-6066129 | None:intergenic | 15.0% |
| !!! | AAATCGATTTATTTGAATTT+TGG | + | chr1_4:6066187-6066206 | Msa0146410:intron | 15.0% |
| !!! | AAACTTTAAGAATTTTAGAA+GGG | - | chr1_4:6066401-6066420 | None:intergenic | 15.0% |
| !! | TTAAAGTTTCTAAGTATATT+TGG | + | chr1_4:6066412-6066431 | Msa0146410:intron | 15.0% |
| !! | AATCTAATTTAACCATAATA+TGG | - | chr1_4:6066444-6066463 | None:intergenic | 15.0% |
| !! | CATAAATAAAAACAGATTAG+AGG | - | chr1_4:6063486-6063505 | None:intergenic | 20.0% |
| !! | GGAAAATGATTGAAATAAAT+GGG | + | chr1_4:6063693-6063712 | Msa0146410:intron | 20.0% |
| !! | GATTTAACATTATACAAAAC+AGG | - | chr1_4:6063829-6063848 | None:intergenic | 20.0% |
| !!! | ATAAATCTTTTTGTCAAACA+TGG | - | chr1_4:6063937-6063956 | None:intergenic | 20.0% |
| !! | ATGTTTGACAAAAAGATTTA+TGG | + | chr1_4:6063936-6063955 | Msa0146410:intron | 20.0% |
| !!! | TAAAAATAGTTTGTAGGTTT+AGG | + | chr1_4:6064191-6064210 | Msa0146410:intron | 20.0% |
| !!! | ATCTTTCAAGTTGTTAATAT+TGG | - | chr1_4:6064265-6064284 | None:intergenic | 20.0% |
| !! | ATAACTCTATATCATTTAAC+TGG | + | chr1_4:6064762-6064781 | Msa0146410:intron | 20.0% |
| !! | TTTGATGAACATATTTGATA+AGG | + | chr1_4:6064896-6064915 | Msa0146410:CDS | 20.0% |
| !!! | TTTTAATGTTTTTGGAATCA+GGG | - | chr1_4:6065159-6065178 | None:intergenic | 20.0% |
| !!! | TTTTTAATGTTTTTGGAATC+AGG | - | chr1_4:6065160-6065179 | None:intergenic | 20.0% |
| !!! | ATATCACATTTTTCCTTTAA+CGG | + | chr1_4:6065493-6065512 | Msa0146410:intron | 20.0% |
| !! | AATTACAATTTCAAAGATCT+AGG | + | chr1_4:6065749-6065768 | Msa0146410:intron | 20.0% |
| !! | TGATTTATTTACATAGCTTT+AGG | + | chr1_4:6065801-6065820 | Msa0146410:intron | 20.0% |
| !! | CTAACTCATATTATATTGTA+TGG | - | chr1_4:6065848-6065867 | None:intergenic | 20.0% |
| !! | CATACAATATAATATGAGTT+AGG | + | chr1_4:6065846-6065865 | Msa0146410:intron | 20.0% |
| !!! | ATCTTTCCAGTATTATATTT+TGG | + | chr1_4:6065888-6065907 | Msa0146410:intron | 20.0% |
| !!! | ATACTTTTTTATGGAGTATT+TGG | - | chr1_4:6065958-6065977 | None:intergenic | 20.0% |
| !!! | AATTTGGGAATACTTTTTTA+TGG | - | chr1_4:6065967-6065986 | None:intergenic | 20.0% |
| !!! | GGTTTCTAAAAGTATTAATT+GGG | - | chr1_4:6066089-6066108 | None:intergenic | 20.0% |
| !!! | AGGTTTCTAAAAGTATTAAT+TGG | - | chr1_4:6066090-6066109 | None:intergenic | 20.0% |
| !!! | ACTTTTAGAAACCTTTATTT+TGG | + | chr1_4:6066096-6066115 | Msa0146410:intron | 20.0% |
| !! | TCTACAATAAAGATATAAAC+AGG | + | chr1_4:6066275-6066294 | Msa0146410:intron | 20.0% |
| !! | TATTGAGTATGAATCTTATA+AGG | - | chr1_4:6066352-6066371 | None:intergenic | 20.0% |
| !!! | GAAACTTTAAGAATTTTAGA+AGG | - | chr1_4:6066402-6066421 | None:intergenic | 20.0% |
| !! | ATTTGGAAATTACCATATTA+TGG | + | chr1_4:6066429-6066448 | Msa0146410:intron | 20.0% |
| !! | TTAGATTGAAAACCTTTAAA+TGG | + | chr1_4:6066457-6066476 | Msa0146410:intron | 20.0% |
| !! | ATCTAGAAATTATCATACTA+TGG | + | chr1_4:6066886-6066905 | Msa0146410:intron | 20.0% |
| !! | TTGCTTTATAATAAGATGAA+AGG | + | chr1_4:6068406-6068425 | Msa0146410:three_prime_UTR | 20.0% |
| !! | TTTATAATAAGATGAAAGGT+GGG | + | chr1_4:6068410-6068429 | Msa0146410:three_prime_UTR | 20.0% |
| !!! | TATTTGTTGTGAATTGATTT+GGG | - | chr1_4:6068442-6068461 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTGAATTGATT+TGG | - | chr1_4:6068443-6068462 | None:intergenic | 20.0% |
| !! | AGTACTTGTGTTTTATGTAT+TGG | + | chr1_4:6063562-6063581 | Msa0146410:intron | 25.0% |
| ! | GGGAAAATGATTGAAATAAA+TGG | + | chr1_4:6063692-6063711 | Msa0146410:intron | 25.0% |
| ! | GAAACAACATATTAAGATTC+TGG | + | chr1_4:6063747-6063766 | Msa0146410:intron | 25.0% |
| !! | TTTTTCTACCATAAAGAGAA+TGG | - | chr1_4:6063886-6063905 | None:intergenic | 25.0% |
| ! | TTGACAAAAAGATTTATGGT+TGG | + | chr1_4:6063940-6063959 | Msa0146410:intron | 25.0% |
| ! | GATACAATTGTGATATGAAA+TGG | + | chr1_4:6064002-6064021 | Msa0146410:intron | 25.0% |
| !! | GAATAGAGAAAATGATTTGT+TGG | + | chr1_4:6064318-6064337 | Msa0146410:intron | 25.0% |
| !! | ATTTGTTGGTATTGAAACTT+GGG | + | chr1_4:6064332-6064351 | Msa0146410:intron | 25.0% |
| ! | TTATTCTTGTGTAGAAAGTA+AGG | + | chr1_4:6064380-6064399 | Msa0146410:intron | 25.0% |
| ! | AGTTGAATGTTTGAATGAAA+GGG | + | chr1_4:6064403-6064422 | Msa0146410:intron | 25.0% |
| ! | TAGTCATGTATGAAATTGTT+TGG | + | chr1_4:6064635-6064654 | Msa0146410:intron | 25.0% |
| ! | CACTAAAAACAATAACAAAG+AGG | - | chr1_4:6064862-6064881 | None:intergenic | 25.0% |
| !!! | TGTTATTGTTTTTAGTGTCT+AGG | + | chr1_4:6064865-6064884 | Msa0146410:intron | 25.0% |
| ! | AAATGCATCTTTATCAACAA+CGG | - | chr1_4:6064925-6064944 | None:intergenic | 25.0% |
| ! | AAGTATTCCATGAATAAATC+TGG | - | chr1_4:6065104-6065123 | None:intergenic | 25.0% |
| !! | AAGACATTTTCTTTAACTAC+TGG | + | chr1_4:6065128-6065147 | Msa0146410:intron | 25.0% |
| !! | AGACATTTTCTTTAACTACT+GGG | + | chr1_4:6065129-6065148 | Msa0146410:intron | 25.0% |
| ! | CAGAGAAATAAACTTTGTAT+TGG | - | chr1_4:6065198-6065217 | None:intergenic | 25.0% |
| !!! | TAATATTTTGGCATTGATCA+TGG | + | chr1_4:6065468-6065487 | Msa0146410:intron | 25.0% |
| !! | TATCACATTTTTCCTTTAAC+GGG | + | chr1_4:6065494-6065513 | Msa0146410:intron | 25.0% |
| ! | AATTTCAAAGATCTAGGTAA+AGG | + | chr1_4:6065755-6065774 | Msa0146410:intron | 25.0% |
| ! | GTAAAGGAGTGAAATATAAT+TGG | + | chr1_4:6065771-6065790 | Msa0146410:intron | 25.0% |
| !!! | TAGCTTTAGGATAATTTTGT+TGG | + | chr1_4:6065814-6065833 | Msa0146410:intron | 25.0% |
| ! | AAGAAGCCAAAATATAATAC+TGG | - | chr1_4:6065897-6065916 | None:intergenic | 25.0% |
| !!! | TATTTGAATTTTGGCATACA+TGG | + | chr1_4:6066196-6066215 | Msa0146410:intron | 25.0% |
| ! | TATCACATGATACAAATCAA+TGG | + | chr1_4:6066231-6066250 | Msa0146410:intron | 25.0% |
| ! | ATACGTGATATACTTACTAT+GGG | - | chr1_4:6066313-6066332 | None:intergenic | 25.0% |
| ! | ATTTACAAGAGTCCATTTAA+AGG | - | chr1_4:6066472-6066491 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTAATATG+CGG | + | chr1_4:6066522-6066541 | Msa0146410:intron | 25.0% |
| ! | ATTAGTGTTCTTCATTGAAA+AGG | + | chr1_4:6066551-6066570 | Msa0146410:intron | 25.0% |
| !! | AAAAAACCGTCTTTGAAAAA+TGG | + | chr1_4:6066583-6066602 | Msa0146410:intron | 25.0% |
| ! | AATGGTATGTGAAACAAAAT+AGG | + | chr1_4:6066601-6066620 | Msa0146410:intron | 25.0% |
| !!! | TTATGTGACTTTGGTTTTAA+TGG | + | chr1_4:6066694-6066713 | Msa0146410:intron | 25.0% |
| ! | TTTATCTCCTATTGTATACT+TGG | - | chr1_4:6066770-6066789 | None:intergenic | 25.0% |
| ! | TTACATCGAAAACATATAAC+TGG | + | chr1_4:6066913-6066932 | Msa0146410:intron | 25.0% |
| !!! | TGCTCTAAATTTTACATCTA+TGG | - | chr1_4:6066939-6066958 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTATTAAG+TGG | + | chr1_4:6066990-6067009 | Msa0146410:intron | 25.0% |
| ! | AGATGTTATCCTTATTAAGT+GGG | + | chr1_4:6066991-6067010 | Msa0146410:intron | 25.0% |
| ! | TTAATATAACCGAATGTTGA+TGG | + | chr1_4:6067305-6067324 | Msa0146410:intron | 25.0% |
| !! | AATCTCATCTTATTTCAGTT+CGG | - | chr1_4:6067489-6067508 | None:intergenic | 25.0% |
| ! | TCAAACTCAATTTCATCAAA+AGG | - | chr1_4:6067945-6067964 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTGTTCAAATTCA+TGG | + | chr1_4:6068157-6068176 | Msa0146410:three_prime_UTR | 25.0% |
| !! | TTACGTTCCAGATATTATTT+TGG | + | chr1_4:6068364-6068383 | Msa0146410:three_prime_UTR | 25.0% |
| ! | CTTTATAATAAGATGAAAGG+TGG | + | chr1_4:6068409-6068428 | Msa0146410:three_prime_UTR | 25.0% |
| ! | TATTTTCCGCTTATTCATTC+GGG | - | chr1_4:6063132-6063151 | None:intergenic | 30.0% |
| ! | GTATTTTCCGCTTATTCATT+CGG | - | chr1_4:6063133-6063152 | None:intergenic | 30.0% |
| ATGAATAAGCGGAAAATACT+AGG | + | chr1_4:6063134-6063153 | Msa0146410:five_prime_UTR | 30.0% | |
| TTTGATGGAGAATTCGAATT+TGG | - | chr1_4:6063275-6063294 | None:intergenic | 30.0% | |
| TTCGAATTCTCCATCAAAAA+TGG | + | chr1_4:6063277-6063296 | Msa0146410:exon | 30.0% | |
| TCGAATTCTCCATCAAAAAT+GGG | + | chr1_4:6063278-6063297 | Msa0146410:exon | 30.0% | |
| ACATAGAGAAACGGTAATTA+CGG | - | chr1_4:6063451-6063470 | None:intergenic | 30.0% | |
| GATCTTAAGACATAGAGAAA+CGG | - | chr1_4:6063460-6063479 | None:intergenic | 30.0% | |
| ! | GAATTAGTAGAAGCATATAG+TGG | + | chr1_4:6063715-6063734 | Msa0146410:intron | 30.0% |
| TTGAGTTTCCATTCTCTTTA+TGG | + | chr1_4:6063875-6063894 | Msa0146410:intron | 30.0% | |
| ! | TGGCTTTTCTTCAAAAACAT+AGG | + | chr1_4:6064022-6064041 | Msa0146410:intron | 30.0% |
| GAAAAAGTCATGCTTTCATA+TGG | + | chr1_4:6064285-6064304 | Msa0146410:intron | 30.0% | |
| !! | GATTTGTTGGTATTGAAACT+TGG | + | chr1_4:6064331-6064350 | Msa0146410:intron | 30.0% |
| GAGTTGAATGTTTGAATGAA+AGG | + | chr1_4:6064402-6064421 | Msa0146410:intron | 30.0% | |
| TCATACAGTTGAAACACTTA+AGG | - | chr1_4:6064460-6064479 | None:intergenic | 30.0% | |
| !!! | TCTTCAATCTTTTTTCTCAC+AGG | + | chr1_4:6064493-6064512 | Msa0146410:intron | 30.0% |
| AAAAACATCCTCAACAAAGA+AGG | - | chr1_4:6064556-6064575 | None:intergenic | 30.0% | |
| !! | TTTGTTGAGGATGTTTTTGT+TGG | + | chr1_4:6064558-6064577 | Msa0146410:intron | 30.0% |
| !! | TTGTTGAGGATGTTTTTGTT+GGG | + | chr1_4:6064559-6064578 | Msa0146410:intron | 30.0% |
| ! | TGATGCATTTGGAATTGAAA+TGG | + | chr1_4:6064604-6064623 | Msa0146410:intron | 30.0% |
| ACTCTATATCATTTAACTGG+TGG | + | chr1_4:6064765-6064784 | Msa0146410:intron | 30.0% | |
| TCATTTAACTGGTGGAAAAA+TGG | + | chr1_4:6064773-6064792 | Msa0146410:intron | 30.0% | |
| TGGTGGAAAAATGGTTTAAT+GGG | + | chr1_4:6064782-6064801 | Msa0146410:intron | 30.0% | |
| AATGCATCTTTATCAACAAC+GGG | - | chr1_4:6064924-6064943 | None:intergenic | 30.0% | |
| CCAAAAGTTTAATGCCTAAT+TGG | - | chr1_4:6065045-6065064 | None:intergenic | 30.0% | |
| ! | CCAATTAGGCATTAAACTTT+TGG | + | chr1_4:6065042-6065061 | Msa0146410:intron | 30.0% |
| ! | TTAGGCATTAAACTTTTGGT+TGG | + | chr1_4:6065046-6065065 | Msa0146410:intron | 30.0% |
| !!! | CTTTTGGTTGGTTTATCATT+TGG | + | chr1_4:6065058-6065077 | Msa0146410:intron | 30.0% |
| TGAGTAACCAGATTTATTCA+TGG | + | chr1_4:6065094-6065113 | Msa0146410:intron | 30.0% | |
| ! | GACATTTTCTTTAACTACTG+GGG | + | chr1_4:6065130-6065149 | Msa0146410:intron | 30.0% |
| ! | TTATCACAGTCTCTATTTTG+TGG | + | chr1_4:6065265-6065284 | Msa0146410:intron | 30.0% |
| TCAAACTTCACTTTATGCTT+AGG | + | chr1_4:6065307-6065326 | Msa0146410:intron | 30.0% | |
| TTGCGAAGTCAAATTTAAGT+GGG | + | chr1_4:6065392-6065411 | Msa0146410:CDS | 30.0% | |
| ACATTATCCCCAATAATAGT+AGG | - | chr1_4:6065427-6065446 | None:intergenic | 30.0% | |
| ! | TGAGTCTGTGAGTAATATTT+TGG | + | chr1_4:6065456-6065475 | Msa0146410:intron | 30.0% |
| !! | CAAATTTTAACACCCGTTAA+AGG | - | chr1_4:6065509-6065528 | None:intergenic | 30.0% |
| TATATGCGATTATGTGTGTT+CGG | + | chr1_4:6065714-6065733 | Msa0146410:intron | 30.0% | |
| CATACGTGATATACTTACTA+TGG | - | chr1_4:6066314-6066333 | None:intergenic | 30.0% | |
| AGATGTTATCCTTAATATGC+GGG | + | chr1_4:6066523-6066542 | Msa0146410:intron | 30.0% | |
| TAATTTATGCCCGCATATTA+AGG | - | chr1_4:6066535-6066554 | None:intergenic | 30.0% | |
| !! | CACATACCATTTTTCAAAGA+CGG | - | chr1_4:6066592-6066611 | None:intergenic | 30.0% |
| !!! | AGTTTTAACTGTAGAGAAGA+TGG | + | chr1_4:6066659-6066678 | Msa0146410:intron | 30.0% |
| AATGTCATCTTATGTGACTT+TGG | + | chr1_4:6066685-6066704 | Msa0146410:intron | 30.0% | |
| TTATCCTTATTAAGTGGGAA+TGG | + | chr1_4:6066996-6067015 | Msa0146410:intron | 30.0% | |
| AAAACCATTCCCACTTAATA+AGG | - | chr1_4:6067003-6067022 | None:intergenic | 30.0% | |
| ! | GCATACAATTTTGCAAAGAT+GGG | - | chr1_4:6067057-6067076 | None:intergenic | 30.0% |
| ACCAATTCGATAAAAATCTG+AGG | + | chr1_4:6067107-6067126 | Msa0146410:intron | 30.0% | |
| ! | ACCTCAGATTTTTATCGAAT+TGG | - | chr1_4:6067111-6067130 | None:intergenic | 30.0% |
| CGTTATCACTGTAGAAAATA+TGG | + | chr1_4:6067131-6067150 | Msa0146410:intron | 30.0% | |
| TGGTTGAATCTTATTCGATT+TGG | + | chr1_4:6067151-6067170 | Msa0146410:intron | 30.0% | |
| CTTCTTCCTATTGTATACTT+GGG | - | chr1_4:6067235-6067254 | None:intergenic | 30.0% | |
| ACTTCTTCCTATTGTATACT+TGG | - | chr1_4:6067236-6067255 | None:intergenic | 30.0% | |
| AGTGGGAACAATAAAGAATA+GGG | + | chr1_4:6067265-6067284 | Msa0146410:intron | 30.0% | |
| TTAACAGAACATGTGAGAAA+TGG | + | chr1_4:6067360-6067379 | Msa0146410:intron | 30.0% | |
| TAACAGAACATGTGAGAAAT+GGG | + | chr1_4:6067361-6067380 | Msa0146410:intron | 30.0% | |
| ATAAAGGAGTCCATTATGTT+TGG | + | chr1_4:6067387-6067406 | Msa0146410:intron | 30.0% | |
| TAAAGGAGTCCATTATGTTT+GGG | + | chr1_4:6067388-6067407 | Msa0146410:intron | 30.0% | |
| ! | TAAGCTTTTCCCAAACATAA+TGG | - | chr1_4:6067400-6067419 | None:intergenic | 30.0% |
| ATTATGTTTGGGAAAAGCTT+AGG | + | chr1_4:6067399-6067418 | Msa0146410:intron | 30.0% | |
| TATTTCAGTTCGGATAATTG+AGG | - | chr1_4:6067479-6067498 | None:intergenic | 30.0% | |
| TAGCTATAGGACTATTTGTT+AGG | - | chr1_4:6067524-6067543 | None:intergenic | 30.0% | |
| ACAAATAGTCCTATAGCTAA+AGG | + | chr1_4:6067525-6067544 | Msa0146410:intron | 30.0% | |
| GAGTACATGATATGAAGTTA+TGG | + | chr1_4:6067584-6067603 | Msa0146410:intron | 30.0% | |
| ! | TGCAAATATAGGCAATTTTG+TGG | - | chr1_4:6067798-6067817 | None:intergenic | 30.0% |
| ACAAAATTGCCTATATTTGC+AGG | + | chr1_4:6067797-6067816 | Msa0146410:intron | 30.0% | |
| TGATGAAATTGAGTTTGAGA+AGG | + | chr1_4:6067947-6067966 | Msa0146410:CDS | 30.0% | |
| ! | AAACCTTTGTTTGTTTAGGT+AGG | - | chr1_4:6068070-6068089 | None:intergenic | 30.0% |
| ! | TCTTTAAAGATCTCATTGTG+TGG | - | chr1_4:6068093-6068112 | None:intergenic | 30.0% |
| TTTGTTCAAATTCATGGAAG+AGG | + | chr1_4:6068163-6068182 | Msa0146410:three_prime_UTR | 30.0% | |
| TTGTTCAAATTCATGGAAGA+GGG | + | chr1_4:6068164-6068183 | Msa0146410:three_prime_UTR | 30.0% | |
| !! | GGGACATGTTTGTTATTATT+GGG | - | chr1_4:6068203-6068222 | None:intergenic | 30.0% |
| !! | TGGGACATGTTTGTTATTAT+TGG | - | chr1_4:6068204-6068223 | None:intergenic | 30.0% |
| GATAGCAACTACAAATATTG+TGG | - | chr1_4:6068238-6068257 | None:intergenic | 30.0% | |
| CTGATGACCAAAATAATATC+TGG | - | chr1_4:6068374-6068393 | None:intergenic | 30.0% | |
| GAATAGGTGAAGAAGGAAAA+TGG | - | chr1_4:6063210-6063229 | None:intergenic | 35.0% | |
| GATTCAGAAGAATTTCTCTG+TGG | - | chr1_4:6063240-6063259 | None:intergenic | 35.0% | |
| !! | CAATATACAGCGTTGGATTT+TGG | + | chr1_4:6063315-6063334 | Msa0146410:CDS | 35.0% |
| GAAACGGTAATTACGGAAAA+TGG | - | chr1_4:6063444-6063463 | None:intergenic | 35.0% | |
| AGTTTATGATTGCAGTGTAG+TGG | + | chr1_4:6063671-6063690 | Msa0146410:intron | 35.0% | |
| GTTTATGATTGCAGTGTAGT+GGG | + | chr1_4:6063672-6063691 | Msa0146410:intron | 35.0% | |
| GGAGAATTTATGTAAGATCG+TGG | + | chr1_4:6063768-6063787 | Msa0146410:intron | 35.0% | |
| TGGTATAGTTGAAACTCCTA+GGG | + | chr1_4:6063788-6063807 | Msa0146410:intron | 35.0% | |
| ! | AAAAACTGTGTTGTTGAGCT+TGG | + | chr1_4:6063901-6063920 | Msa0146410:intron | 35.0% |
| AAAGATTTATGGTTGGAGAG+TGG | + | chr1_4:6063947-6063966 | Msa0146410:intron | 35.0% | |
| TTTGTAGGTTTAGGTCTGAT+TGG | + | chr1_4:6064200-6064219 | Msa0146410:intron | 35.0% | |
| CATGCTTTCATATGGACTTT+AGG | + | chr1_4:6064293-6064312 | Msa0146410:intron | 35.0% | |
| AAGTAGTTCCTTCTTTGTTG+AGG | + | chr1_4:6064545-6064564 | Msa0146410:intron | 35.0% | |
| !! | GTAGTGTTGATTGATGCATT+TGG | + | chr1_4:6064593-6064612 | Msa0146410:intron | 35.0% |
| TGTTTGGTCATTATCTTGCT+AGG | + | chr1_4:6064651-6064670 | Msa0146410:intron | 35.0% | |
| CTGGTGGAAAAATGGTTTAA+TGG | + | chr1_4:6064781-6064800 | Msa0146410:intron | 35.0% | |
| GCTCTTTCACTTTACCAATT+AGG | + | chr1_4:6065028-6065047 | Msa0146410:intron | 35.0% | |
| GTTGCGAAGTCAAATTTAAG+TGG | + | chr1_4:6065391-6065410 | Msa0146410:CDS | 35.0% | |
| GAAGTCAAATTTAAGTGGGA+AGG | + | chr1_4:6065396-6065415 | Msa0146410:CDS | 35.0% | |
| !! | AAGGTGTTGCCTACTATTAT+TGG | + | chr1_4:6065415-6065434 | Msa0146410:CDS | 35.0% |
| ! | AGGTGTTGCCTACTATTATT+GGG | + | chr1_4:6065416-6065435 | Msa0146410:CDS | 35.0% |
| ATTGGGGATAATGTTACTGT+AGG | + | chr1_4:6065433-6065452 | Msa0146410:CDS | 35.0% | |
| GTATGTTTGTGTACATGTTC+AGG | + | chr1_4:6065691-6065710 | Msa0146410:intron | 35.0% | |
| ! | CTTGTAAATTTAGAGCTTCG+TGG | + | chr1_4:6066483-6066502 | Msa0146410:intron | 35.0% |
| ! | TAAATTTAGAGCTTCGTGGA+CGG | + | chr1_4:6066487-6066506 | Msa0146410:intron | 35.0% |
| AAACATTCGAGAGAGAATTG+AGG | + | chr1_4:6066635-6066654 | Msa0146410:intron | 35.0% | |
| CACTAGTACAAGATAGTGTT+GGG | + | chr1_4:6066733-6066752 | Msa0146410:intron | 35.0% | |
| ! | CGCATACAATTTTGCAAAGA+TGG | - | chr1_4:6067058-6067077 | None:intergenic | 35.0% |
| AATTGTATGCGAGACAAAAC+AGG | + | chr1_4:6067067-6067086 | Msa0146410:intron | 35.0% | |
| ! | TCTAACATTTTCCTCCTTAC+GGG | - | chr1_4:6067202-6067221 | None:intergenic | 35.0% |
| ! | GTCTAACATTTTCCTCCTTA+CGG | - | chr1_4:6067203-6067222 | None:intergenic | 35.0% |
| CTATTGTATACTTGGGTAAC+TGG | - | chr1_4:6067228-6067247 | None:intergenic | 35.0% | |
| CAGTTACCCAAGTATACAAT+AGG | + | chr1_4:6067226-6067245 | Msa0146410:intron | 35.0% | |
| GAGTGGGAACAATAAAGAAT+AGG | + | chr1_4:6067264-6067283 | Msa0146410:intron | 35.0% | |
| TGTGAGAAATGGGAAGATAA+AGG | + | chr1_4:6067371-6067390 | Msa0146410:intron | 35.0% | |
| TATTCTTTAATTCCTCGCAC+TGG | + | chr1_4:6067446-6067465 | Msa0146410:intron | 35.0% | |
| !! | GGTATGTGATTGTTGTTTGT+GGG | + | chr1_4:6067650-6067669 | Msa0146410:intron | 35.0% |
| ATTGCCTATATTTGCAGGTT+TGG | + | chr1_4:6067802-6067821 | Msa0146410:intron | 35.0% | |
| TTGCCTATATTTGCAGGTTT+GGG | + | chr1_4:6067803-6067822 | Msa0146410:intron | 35.0% | |
| TGCAAGGTTACTGTAATTGA+TGG | - | chr1_4:6067895-6067914 | None:intergenic | 35.0% | |
| CTCAATTTCATCAAAAGGCT+TGG | - | chr1_4:6067940-6067959 | None:intergenic | 35.0% | |
| TGTTTAGGTAGGACATTATC+TGG | - | chr1_4:6068059-6068078 | None:intergenic | 35.0% | |
| TGTCCTACCTAAACAAACAA+AGG | + | chr1_4:6068064-6068083 | Msa0146410:CDS | 35.0% | |
| ! | GTGGAAACCTTTGTTTGTTT+AGG | - | chr1_4:6068074-6068093 | None:intergenic | 35.0% |
| TATTGTGGAGCTATTGATCT+GGG | - | chr1_4:6068223-6068242 | None:intergenic | 35.0% | |
| ATATTGTGGAGCTATTGATC+TGG | - | chr1_4:6068224-6068243 | None:intergenic | 35.0% | |
| TTTGTAGTTGCTATCTACTC+TGG | + | chr1_4:6068243-6068262 | Msa0146410:three_prime_UTR | 35.0% | |
| ! | TTGCTATCTACTCTGGAAAA+GGG | + | chr1_4:6068250-6068269 | Msa0146410:three_prime_UTR | 35.0% |
| TAGGTGAAGAAGGAAAATGG+TGG | - | chr1_4:6063207-6063226 | None:intergenic | 40.0% | |
| ! | TGTGATGGAATAGGTGAAGA+AGG | - | chr1_4:6063217-6063236 | None:intergenic | 40.0% |
| AGAATTTCTCTGTGGTGTGA+TGG | - | chr1_4:6063232-6063251 | None:intergenic | 40.0% | |
| GCTGTATATTGCTCTTCCTA+GGG | - | chr1_4:6063306-6063325 | None:intergenic | 40.0% | |
| ! | GGATTTTGGATTCGAGAAAC+TGG | + | chr1_4:6063329-6063348 | Msa0146410:CDS | 40.0% |
| GGAAGTAGTAGTTTCCTTGA+AGG | - | chr1_4:6063382-6063401 | None:intergenic | 40.0% | |
| AAAGTGACTAACGCTGTTCT+TGG | - | chr1_4:6063403-6063422 | None:intergenic | 40.0% | |
| TTGGAAGCTCAGCGAAATAA+TGG | + | chr1_4:6063581-6063600 | Msa0146410:intron | 40.0% | |
| TGGAAGCTCAGCGAAATAAT+GGG | + | chr1_4:6063582-6063601 | Msa0146410:intron | 40.0% | |
| GTGGTATAGTTGAAACTCCT+AGG | + | chr1_4:6063787-6063806 | Msa0146410:intron | 40.0% | |
| ! | TGTGTTGTTGAGCTTGGTAT+TGG | + | chr1_4:6063907-6063926 | Msa0146410:intron | 40.0% |
| AATGTGAACATCACCGATGA+CGG | - | chr1_4:6064964-6064983 | None:intergenic | 40.0% | |
| AGAGGATCATCCATTTGGTA+TGG | + | chr1_4:6064987-6065006 | Msa0146410:CDS | 40.0% | |
| CATGACACATCCATACCAAA+TGG | - | chr1_4:6065000-6065019 | None:intergenic | 40.0% | |
| GATGTGAACAACATCAGTGT+TGG | + | chr1_4:6065331-6065350 | Msa0146410:CDS | 40.0% | |
| ! | AACAACATCAGTGTTGGAAG+TGG | + | chr1_4:6065337-6065356 | Msa0146410:CDS | 40.0% |
| GAACATTCAGGATAACTCCT+TGG | + | chr1_4:6065363-6065382 | Msa0146410:CDS | 40.0% | |
| ! | GGTGTTGCCTACTATTATTG+GGG | + | chr1_4:6065417-6065436 | Msa0146410:CDS | 40.0% |
| ACGGGTGTTAAAATTTGCAC+TGG | + | chr1_4:6065512-6065531 | Msa0146410:intron | 40.0% | |
| CGGGTGTTAAAATTTGCACT+GGG | + | chr1_4:6065513-6065532 | Msa0146410:intron | 40.0% | |
| TGTTAAAATTTGCACTGGGC+AGG | + | chr1_4:6065517-6065536 | Msa0146410:intron | 40.0% | |
| ! | GATGAGGCATTTGTTGGTAT+GGG | + | chr1_4:6065574-6065593 | Msa0146410:CDS | 40.0% |
| TGTTGTTGAGAAACATGCCA+TGG | + | chr1_4:6065618-6065637 | Msa0146410:CDS | 40.0% | |
| TGTACACAAACATACCTCTC+CGG | - | chr1_4:6065686-6065705 | None:intergenic | 40.0% | |
| GCACTAGTACAAGATAGTGT+TGG | + | chr1_4:6066732-6066751 | Msa0146410:intron | 40.0% | |
| TTGTATACTTGGCCAACTGA+TGG | - | chr1_4:6066759-6066778 | None:intergenic | 40.0% | |
| CAGTTGGCCAAGTATACAAT+AGG | + | chr1_4:6066760-6066779 | Msa0146410:intron | 40.0% | |
| ! | AAAAGAGCACAAGCAATGAG+AGG | + | chr1_4:6066787-6066806 | Msa0146410:intron | 40.0% |
| ! | AAAGAGCACAAGCAATGAGA+GGG | + | chr1_4:6066788-6066807 | Msa0146410:intron | 40.0% |
| ! | AGTGTCGAGCAAGAATACAA+TGG | + | chr1_4:6066822-6066841 | Msa0146410:intron | 40.0% |
| GTGTCGAGCAAGAATACAAT+GGG | + | chr1_4:6066823-6066842 | Msa0146410:intron | 40.0% | |
| ! | TTTAGAGCAGTTTGCAAGAC+TGG | + | chr1_4:6066950-6066969 | Msa0146410:intron | 40.0% |
| TTGTATACTTGGGTAACTGG+TGG | - | chr1_4:6067225-6067244 | None:intergenic | 40.0% | |
| !! | TAACCGAATGTTGATGGTTG+AGG | + | chr1_4:6067311-6067330 | Msa0146410:intron | 40.0% |
| !! | AACCGAATGTTGATGGTTGA+GGG | + | chr1_4:6067312-6067331 | Msa0146410:intron | 40.0% |
| TTTGGGAAAAGCTTAGGAAG+AGG | + | chr1_4:6067405-6067424 | Msa0146410:intron | 40.0% | |
| !! | GGGTATGTGATTGTTGTTTG+TGG | + | chr1_4:6067649-6067668 | Msa0146410:intron | 40.0% |
| CTATCACAATACAGCACGAA+TGG | - | chr1_4:6067698-6067717 | None:intergenic | 40.0% | |
| ! | ACTGTAATTGATGGCTGACT+GGG | - | chr1_4:6067886-6067905 | None:intergenic | 40.0% |
| ! | TACTGTAATTGATGGCTGAC+TGG | - | chr1_4:6067887-6067906 | None:intergenic | 40.0% |
| CAATTACAGTAACCTTGCAC+AGG | + | chr1_4:6067896-6067915 | Msa0146410:CDS | 40.0% | |
| CTTTACGCGCAAACTTCTTT+CGG | - | chr1_4:6067977-6067996 | None:intergenic | 40.0% | |
| TTATCTGGAAGAATGAGCTC+TGG | - | chr1_4:6068044-6068063 | None:intergenic | 40.0% | |
| ! | GTTGCTATCTACTCTGGAAA+AGG | + | chr1_4:6068249-6068268 | Msa0146410:three_prime_UTR | 40.0% |
| CATGTGAAACTCACATGCAT+TGG | - | chr1_4:6068322-6068341 | None:intergenic | 40.0% | |
| TGACCTCCCGAATGAATAAG+CGG | + | chr1_4:6063123-6063142 | Msa0146410:five_prime_UTR | 45.0% | |
| TTTCCGCTTATTCATTCGGG+AGG | - | chr1_4:6063129-6063148 | None:intergenic | 45.0% | |
| ! | AAATGGTGGTGAGTGGAAGA+AGG | - | chr1_4:6063193-6063212 | None:intergenic | 45.0% |
| ! | AGAAGGAAAATGGTGGTGAG+TGG | - | chr1_4:6063200-6063219 | None:intergenic | 45.0% |
| ! | TCTCTGTGGTGTGATGGAAT+AGG | - | chr1_4:6063226-6063245 | None:intergenic | 45.0% |
| !! | CCTAGGGTTCCCATTTTTGA+TGG | - | chr1_4:6063290-6063309 | None:intergenic | 45.0% |
| CCATCAAAAATGGGAACCCT+AGG | + | chr1_4:6063287-6063306 | Msa0146410:exon | 45.0% | |
| CGCTGTATATTGCTCTTCCT+AGG | - | chr1_4:6063307-6063326 | None:intergenic | 45.0% | |
| GGAAGAGCAATATACAGCGT+TGG | + | chr1_4:6063308-6063327 | Msa0146410:CDS | 45.0% | |
| CTCCTAGGGAAAATTACTGC+AGG | + | chr1_4:6063802-6063821 | Msa0146410:intron | 45.0% | |
| GTCATCGGTGATGTTCACAT+TGG | + | chr1_4:6064963-6064982 | Msa0146410:CDS | 45.0% | |
| TTGGCAGAGGATCATCCATT+TGG | + | chr1_4:6064982-6065001 | Msa0146410:CDS | 45.0% | |
| TGGTATGGATGTGTCATGAG+AGG | + | chr1_4:6065002-6065021 | Msa0146410:CDS | 45.0% | |
| TGGAAGTGGAACGAACATTC+AGG | + | chr1_4:6065351-6065370 | Msa0146410:CDS | 45.0% | |
| CTTACATGGTTGCACTGTTG+AGG | + | chr1_4:6065552-6065571 | Msa0146410:CDS | 45.0% | |
| ! | GTTGAGGATGAGGCATTTGT+TGG | + | chr1_4:6065568-6065587 | Msa0146410:CDS | 45.0% |
| ! | GGATGAGGCATTTGTTGGTA+TGG | + | chr1_4:6065573-6065592 | Msa0146410:CDS | 45.0% |
| CCGTGAATTCTGTCTCACAA+GGG | - | chr1_4:6065656-6065675 | None:intergenic | 45.0% | |
| CCCTTGTGAGACAGAATTCA+CGG | + | chr1_4:6065653-6065672 | Msa0146410:CDS | 45.0% | |
| TCCGTGAATTCTGTCTCACA+AGG | - | chr1_4:6065657-6065676 | None:intergenic | 45.0% | |
| CAGAATTCACGGATTCCATC+CGG | + | chr1_4:6065664-6065683 | Msa0146410:CDS | 45.0% | |
| TGCGATTATGTGTGTTCGGT+TGG | + | chr1_4:6065718-6065737 | Msa0146410:intron | 45.0% | |
| GCGATTATGTGTGTTCGGTT+GGG | + | chr1_4:6065719-6065738 | Msa0146410:intron | 45.0% | |
| GAAGAAGTCAACGAGAGAGT+GGG | + | chr1_4:6067248-6067267 | Msa0146410:intron | 45.0% | |
| CTCCCTCAACCATCAACATT+CGG | - | chr1_4:6067317-6067336 | None:intergenic | 45.0% | |
| ATGGTTGAGGGAGTAACGAT+GGG | + | chr1_4:6067324-6067343 | Msa0146410:intron | 45.0% | |
| GGAAAAGCTTAGGAAGAGGT+GGG | + | chr1_4:6067409-6067428 | Msa0146410:intron | 45.0% | |
| AGTCCTATAGCTAAAGGCAG+AGG | + | chr1_4:6067531-6067550 | Msa0146410:intron | 45.0% | |
| GTCCTATAGCTAAAGGCAGA+GGG | + | chr1_4:6067532-6067551 | Msa0146410:intron | 45.0% | |
| !! | TGGTGTTGATCGATCCATGT+TGG | + | chr1_4:6067604-6067623 | Msa0146410:intron | 45.0% |
| ! | ACTGCCTCTGGTGATGAAAA+GGG | + | chr1_4:6067629-6067648 | Msa0146410:intron | 45.0% |
| ! | CATACCCTTTTCATCACCAG+AGG | - | chr1_4:6067636-6067655 | None:intergenic | 45.0% |
| CTGCCCAAACCTGCAAATAT+AGG | - | chr1_4:6067809-6067828 | None:intergenic | 45.0% | |
| CTATATTTGCAGGTTTGGGC+AGG | + | chr1_4:6067807-6067826 | Msa0146410:intron | 45.0% | |
| AGCTTCCTCAAGAACTTTGC+CGG | - | chr1_4:6067837-6067856 | None:intergenic | 45.0% | |
| ! | GAGGAGTATGACTCAATGCT+GGG | + | chr1_4:6067999-6068018 | Msa0146410:CDS | 45.0% |
| TCCACATACACGATCCTTCA+GGG | - | chr1_4:6068281-6068300 | None:intergenic | 45.0% | |
| ATCCACATACACGATCCTTC+AGG | - | chr1_4:6068282-6068301 | None:intergenic | 45.0% | |
| !!! | AAATCATTTTTTATTTTTTT+TGG | + | chr1_4:6063844-6063863 | Msa0146410:intron | 5.0% |
| !!! | AATCATTTTTTATTTTTTTT+GGG | + | chr1_4:6063845-6063864 | Msa0146410:intron | 5.0% |
| !!! | TTATTTTTTTTTAATGTTTT+TGG | - | chr1_4:6065167-6065186 | None:intergenic | 5.0% |
| ! | GGCCTGCAGTAATTTTCCCT+AGG | - | chr1_4:6063807-6063826 | None:intergenic | 50.0% |
| GGTGATGTTCACATTGGCAG+AGG | + | chr1_4:6064969-6064988 | Msa0146410:CDS | 50.0% | |
| TGGTTGCACTGTTGAGGATG+AGG | + | chr1_4:6065558-6065577 | Msa0146410:CDS | 50.0% | |
| TGGTATGGGTGCAACACTAC+TGG | + | chr1_4:6065588-6065607 | Msa0146410:CDS | 50.0% | |
| ATGGGTGCAACACTACTGGA+TGG | + | chr1_4:6065592-6065611 | Msa0146410:CDS | 50.0% | |
| AAACATGCCATGGTTGCTGC+TGG | + | chr1_4:6065628-6065647 | Msa0146410:CDS | 50.0% | |
| CACAAACATACCTCTCCGGA+TGG | - | chr1_4:6065682-6065701 | None:intergenic | 50.0% | |
| ! | GATAGTGTTGGGCCATCAGT+TGG | + | chr1_4:6066744-6066763 | Msa0146410:intron | 50.0% |
| ACAAGCAATGAGAGGGAGAG+TGG | + | chr1_4:6066795-6066814 | Msa0146410:intron | 50.0% | |
| CAAGCAATGAGAGGGAGAGT+GGG | + | chr1_4:6066796-6066815 | Msa0146410:intron | 50.0% | |
| GGAAGAAGTCAACGAGAGAG+TGG | + | chr1_4:6067247-6067266 | Msa0146410:intron | 50.0% | |
| GATGGTTGAGGGAGTAACGA+TGG | + | chr1_4:6067323-6067342 | Msa0146410:intron | 50.0% | |
| TGGTTGAGGGAGTAACGATG+GGG | + | chr1_4:6067325-6067344 | Msa0146410:intron | 50.0% | |
| GGGAAAAGCTTAGGAAGAGG+TGG | + | chr1_4:6067408-6067427 | Msa0146410:intron | 50.0% | |
| TGAGGAATTTGACCAGTGCG+AGG | - | chr1_4:6067461-6067480 | None:intergenic | 50.0% | |
| CTCCCTCTGCCTTTAGCTAT+AGG | - | chr1_4:6067537-6067556 | None:intergenic | 50.0% | |
| ! | GACTGCCTCTGGTGATGAAA+AGG | + | chr1_4:6067628-6067647 | Msa0146410:intron | 50.0% |
| GCAATCCGGCAAAGTTCTTG+AGG | + | chr1_4:6067829-6067848 | Msa0146410:CDS | 50.0% | |
| ! | GCTTGGCATTTTCAGCTGCA+TGG | - | chr1_4:6067923-6067942 | None:intergenic | 50.0% |
| GAAGTTTGCGCGTAAAGACG+AGG | + | chr1_4:6067980-6067999 | Msa0146410:CDS | 50.0% | |
| ! | CGAGGAGTATGACTCAATGC+TGG | + | chr1_4:6067998-6068017 | Msa0146410:CDS | 50.0% |
| !! | CTGGAAGAATGAGCTCTGGA+GGG | - | chr1_4:6068040-6068059 | None:intergenic | 50.0% |
| ! | TCTGGAAGAATGAGCTCTGG+AGG | - | chr1_4:6068041-6068060 | None:intergenic | 50.0% |
| GGAAAAGGGAAGTTCCCTGA+AGG | + | chr1_4:6068264-6068283 | Msa0146410:three_prime_UTR | 50.0% | |
| TCCCTGAAGGATCGTGTATG+TGG | + | chr1_4:6068277-6068296 | Msa0146410:three_prime_UTR | 50.0% | |
| GGACAAGCCATTGATCGCCT+CGG | + | chr1_4:6063350-6063369 | Msa0146410:CDS | 55.0% | |
| TTCCTTGAAGGCGAGAACCG+AGG | - | chr1_4:6063370-6063389 | None:intergenic | 55.0% | |
| ! | GTGAACATCACCGATGACGG+AGG | - | chr1_4:6064961-6064980 | None:intergenic | 55.0% |
| TGACTTCGCAACGTGCACCA+AGG | - | chr1_4:6065383-6065402 | None:intergenic | 55.0% | |
| GGTCACAGTGCGGTCTTACA+TGG | + | chr1_4:6065538-6065557 | Msa0146410:intron | 55.0% | |
| TTCACGGATTCCATCCGGAG+AGG | + | chr1_4:6065669-6065688 | Msa0146410:CDS | 55.0% | |
| !! | AGCTTCGTGGACGGATTGCA+AGG | + | chr1_4:6066496-6066515 | Msa0146410:intron | 55.0% |
| ! | GATGTCTTGAAGCGCCCGTA+AGG | + | chr1_4:6067185-6067204 | Msa0146410:intron | 55.0% |
| !! | TCCATGTTGGTGACTGCCTC+TGG | + | chr1_4:6067617-6067636 | Msa0146410:intron | 55.0% |
| ACCAGAGGCAGTCACCAACA+TGG | - | chr1_4:6067621-6067640 | None:intergenic | 55.0% | |
| GCGAGAACCGAGGCGATCAA+TGG | - | chr1_4:6063360-6063379 | None:intergenic | 60.0% | |
| !! | ACCGATGACGGAGGCACTTG+GGG | - | chr1_4:6064952-6064971 | None:intergenic | 60.0% |
| !! | CACCGATGACGGAGGCACTT+GGG | - | chr1_4:6064953-6064972 | None:intergenic | 60.0% |
| !! | TCACCGATGACGGAGGCACT+TGG | - | chr1_4:6064954-6064973 | None:intergenic | 60.0% |
| !! | AAGGGCACCAGCAGCAACCA+TGG | - | chr1_4:6065638-6065657 | None:intergenic | 60.0% |
| ! | GTCTTGAAGCGCCCGTAAGG+AGG | + | chr1_4:6067188-6067207 | Msa0146410:intron | 60.0% |
| GCAGGTTTGGGCAGGCAATC+CGG | + | chr1_4:6067815-6067834 | Msa0146410:intron | 60.0% | |
| CAGCTGCATGGACCTGTGCA+AGG | - | chr1_4:6067911-6067930 | None:intergenic | 60.0% | |
| CGCCTCGGTTCTCGCCTTCA+AGG | + | chr1_4:6063365-6063384 | Msa0146410:CDS | 65.0% | |
| GCCCCAAGTGCCTCCGTCAT+CGG | + | chr1_4:6064948-6064967 | Msa0146410:CDS | 65.0% | |
| GCACTGGGCAGGTCACAGTG+CGG | + | chr1_4:6065528-6065547 | Msa0146410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 6063117 | 6068516 | 6063117 | ID=Msa0146410;Name=Msa0146410 |
| chr1_4 | mRNA | 6063117 | 6068516 | 6063117 | ID=Msa0146410-mRNA-1;Parent=Msa0146410;Name=Msa0146410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|5|416|272 |
| chr1_4 | exon | 6063117 | 6063410 | 6063117 | ID=Msa0146410-mRNA-1:exon:2612;Parent=Msa0146410-mRNA-1 |
| chr1_4 | exon | 6064880 | 6065023 | 6064880 | ID=Msa0146410-mRNA-1:exon:2613;Parent=Msa0146410-mRNA-1 |
| chr1_4 | exon | 6065329 | 6065454 | 6065329 | ID=Msa0146410-mRNA-1:exon:2614;Parent=Msa0146410-mRNA-1 |
| chr1_4 | exon | 6065539 | 6065690 | 6065539 | ID=Msa0146410-mRNA-1:exon:2615;Parent=Msa0146410-mRNA-1 |
| chr1_4 | exon | 6067819 | 6068516 | 6067819 | ID=Msa0146410-mRNA-1:exon:2616;Parent=Msa0146410-mRNA-1 |
| chr1_4 | five_prime_UTR | 6063117 | 6063295 | 6063117 | ID=Msa0146410-mRNA-1:five_prime_utr;Parent=Msa0146410-mRNA-1 |
| chr1_4 | CDS | 6063296 | 6063410 | 6063296 | ID=Msa0146410-mRNA-1:cds;Parent=Msa0146410-mRNA-1 |
| chr1_4 | CDS | 6064880 | 6065023 | 6064880 | ID=Msa0146410-mRNA-1:cds;Parent=Msa0146410-mRNA-1 |
| chr1_4 | CDS | 6065329 | 6065454 | 6065329 | ID=Msa0146410-mRNA-1:cds;Parent=Msa0146410-mRNA-1 |
| chr1_4 | CDS | 6065539 | 6065690 | 6065539 | ID=Msa0146410-mRNA-1:cds;Parent=Msa0146410-mRNA-1 |
| chr1_4 | CDS | 6067819 | 6068100 | 6067819 | ID=Msa0146410-mRNA-1:cds;Parent=Msa0146410-mRNA-1 |
| chr1_4 | three_prime_UTR | 6068101 | 6068516 | 6068101 | ID=Msa0146410-mRNA-1:three_prime_utr;Parent=Msa0146410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
