AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374160 MtrunA17_Chr1g0155361 98.162 272 5 0 1 272 1 272 0.0 554
Msa1374160 MtrunA17_Chr3g0141721 84.701 268 40 1 1 268 1 267 2.71e-171 474
Msa1374160 MtrunA17_Chr5g0404561 79.336 271 54 2 1 270 1 270 1.40e-159 444
Msa1374160 MtrunA17_Chr8g0386291 36.792 212 127 2 17 228 37 241 3.83e-44 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374160 AT1G19580.1 85.874 269 37 1 1 268 1 269 2.05e-176 487
Msa1374160 AT1G47260.1 81.061 264 50 0 1 264 1 264 9.89e-167 462
Msa1374160 AT5G66510.1 74.340 265 59 3 1 265 1 256 4.92e-147 412
Msa1374160 AT5G66510.2 71.377 276 59 4 1 265 1 267 2.67e-143 403
Msa1374160 AT1G19580.2 88.827 179 20 0 1 179 1 179 7.84e-119 339
Msa1374160 AT5G63510.1 38.503 187 114 1 42 228 55 240 5.24e-41 142
Msa1374160 AT3G48680.1 37.968 187 115 1 42 228 59 244 1.95e-40 140
Msa1374160 AT5G63510.2 35.047 214 111 4 42 228 55 267 3.54e-35 127
Msa1374160 AT1G47420.1 51.163 86 29 1 1 86 1 73 1.40e-17 80.5

Find 121 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGACATGTTTGTTATTAT+TGG 0.144123 tig0019465:-155157 None:intergenic
CAATATACAGCGTTGGATTT+TGG 0.184113 tig0019465:+150279 Msa1374160:CDS
TTCGAATTCTCCATCGAAAA+TGG 0.194976 tig0019465:+150241 Msa1374160:exon
TTCGATGGAGAATTCGAATT+TGG 0.210598 tig0019465:-150236 None:intergenic
TTCATTCGGGAGGTCAATTT+CGG 0.252936 tig0019465:-150081 None:intergenic
TTACGTTCCAGATATTATTT+TGG 0.270771 tig0019465:+155320 Msa1374160:three_prime_UTR
AAGGTGTTGCCTACTATTAT+TGG 0.284723 tig0019465:+152371 Msa1374160:CDS
AGGTGTTGCCTACTATTATT+GGG 0.302756 tig0019465:+152372 Msa1374160:CDS
TTATTTGTTGTGAATTGATT+TGG 0.309682 tig0019465:-155396 None:intergenic
AAAGTGACTAACGCTGTTCT+TGG 0.312952 tig0019465:-150364 None:intergenic
TGTTTAGGTAGGACATTATC+TGG 0.316419 tig0019465:-155012 None:intergenic
GGGACATGTTTGTTATTATT+GGG 0.318660 tig0019465:-155156 None:intergenic
TACTTTCCGCTTATTCATTC+GGG 0.327530 tig0019465:-150094 None:intergenic
GTACTTTCCGCTTATTCATT+CGG 0.332540 tig0019465:-150095 None:intergenic
AGCTTCCTCAAGAACTTTGC+CGG 0.334411 tig0019465:-154790 None:intergenic
CTTTACGCGCAAACTTCTTT+CGG 0.336036 tig0019465:-154930 None:intergenic
TATTTGTTGTGAATTGATTT+GGG 0.360728 tig0019465:-155395 None:intergenic
TCATTCGGGAGGTCAATTTC+GGG 0.376065 tig0019465:-150080 None:intergenic
CTGATGACCAAAATAATATC+TGG 0.379939 tig0019465:-155327 None:intergenic
TCAAACTCAATTTCATCAAA+AGG 0.380051 tig0019465:-154898 None:intergenic
GAATAGGTGAAGAAGGAAAA+TGG 0.384580 tig0019465:-150171 None:intergenic
CGCCTCGGTTCTCGCCTTCA+AGG 0.386977 tig0019465:+150329 Msa1374160:CDS
GTGGAAACCTTTGTTTGTTT+AGG 0.399925 tig0019465:-155027 None:intergenic
GGATGAGGCATTTGTTGGTA+TGG 0.402155 tig0019465:+152529 Msa1374160:CDS
TTTGATGAACATATTTGATA+AGG 0.410702 tig0019465:+151856 Msa1374160:CDS
CTCAATTTCATCAAAAGGCT+TGG 0.413672 tig0019465:-154893 None:intergenic
TACTGTAATTGATGGCTGAC+TGG 0.414279 tig0019465:-154840 None:intergenic
TGGAAGTGGAACGAACATTC+AGG 0.417411 tig0019465:+152307 Msa1374160:CDS
ATCCACATACACGATCCTTC+AGG 0.420689 tig0019465:-155235 None:intergenic
GCAGGTTTGGGCAGGCAATC+CGG 0.427230 tig0019465:+154771 Msa1374160:intron
CGCTGTATATTGCTCTTCCT+AGG 0.432752 tig0019465:-150268 None:intergenic
CTATATTTGCAGGTTTGGGC+AGG 0.438052 tig0019465:+154763 Msa1374160:intron
ATGAATAAGCGGAAAGTACT+AGG 0.441855 tig0019465:+150099 Msa1374160:five_prime_UTR
ATATTGTGGAGCTATTGATC+TGG 0.442749 tig0019465:-155177 None:intergenic
GGAAGTAGTAGTTTCCTTGA+AGG 0.444566 tig0019465:-150343 None:intergenic
TTGGCAGAGGATCATCCATT+TGG 0.451417 tig0019465:+151942 Msa1374160:CDS
TCACCGATGACGGAGGCACT+TGG 0.455404 tig0019465:-151911 None:intergenic
TTTGTAGTTGCTATCTACTC+TGG 0.459816 tig0019465:+155199 Msa1374160:three_prime_UTR
AATGCATCTTTATCAACAAC+GGG 0.459975 tig0019465:-151881 None:intergenic
ACATTATCCCCAATAATAGT+AGG 0.462118 tig0019465:-152380 None:intergenic
TCGAATTCTCCATCGAAAAT+GGG 0.468600 tig0019465:+150242 Msa1374160:exon
CACCGATGACGGAGGCACTT+GGG 0.479686 tig0019465:-151910 None:intergenic
GTTGAGGATGAGGCATTTGT+TGG 0.479806 tig0019465:+152524 Msa1374160:CDS
GTTGCTATCTACTCTGGAAA+AGG 0.484435 tig0019465:+155205 Msa1374160:three_prime_UTR
CATGACACATCCATACCAAA+TGG 0.491582 tig0019465:-151957 None:intergenic
GCCCCAAGTGCCTCCGTCAT+CGG 0.493477 tig0019465:+151908 Msa1374160:CDS
CGAGGAGTATGACTCAATGC+TGG 0.495730 tig0019465:+154954 Msa1374160:CDS
CCCTTGTGAGACAGAATTCA+CGG 0.497709 tig0019465:+152609 Msa1374160:CDS
CTTTATAATAAGATGAAAGG+TGG 0.500506 tig0019465:+155365 Msa1374160:three_prime_UTR
GTTGCGAAGTCAAATTTAAG+TGG 0.500521 tig0019465:+152347 Msa1374160:CDS
TTTGTTCAAATTCATGGAAG+AGG 0.507441 tig0019465:+155119 Msa1374160:three_prime_UTR
CAGAATTCACGGATTCCATC+CGG 0.507689 tig0019465:+152620 Msa1374160:CDS
TGCAAGGTTACTGTAATTGA+TGG 0.508085 tig0019465:-154848 None:intergenic
TTATCTGGAAGAATGAGCTC+TGG 0.510631 tig0019465:-154997 None:intergenic
TGGTATGGGTGCAACACTAC+TGG 0.514205 tig0019465:+152544 Msa1374160:CDS
TCCACATACACGATCCTTCA+GGG 0.517962 tig0019465:-155234 None:intergenic
ACCGATGACGGAGGCACTTG+GGG 0.523236 tig0019465:-151909 None:intergenic
TTGTTCAAATTCATGGAAGA+GGG 0.524350 tig0019465:+155120 Msa1374160:three_prime_UTR
GCGAGAACCGAGGCGATCAA+TGG 0.526580 tig0019465:-150321 None:intergenic
CATGTGAAACTCACATGCAT+TGG 0.537464 tig0019465:-155275 None:intergenic
GGTCACAGTGCGGTCTTACA+TGG 0.537571 tig0019465:+152494 Msa1374160:intron
GCTGTATATTGCTCTTCCTA+GGG 0.544124 tig0019465:-150267 None:intergenic
TTGCTTTATAATAAGATGAA+AGG 0.546529 tig0019465:+155362 Msa1374160:three_prime_UTR
CAGCTGCATGGACCTGTGCA+AGG 0.546560 tig0019465:-154864 None:intergenic
TCCCTGAAGGATCGTGTATG+TGG 0.547029 tig0019465:+155233 Msa1374160:three_prime_UTR
TATTGTGGAGCTATTGATCT+GGG 0.547920 tig0019465:-155176 None:intergenic
CCATCGAAAATGGGAACCCT+AGG 0.548387 tig0019465:+150251 Msa1374160:exon
AAATGGTGGTGAGTGGAAGA+AGG 0.549936 tig0019465:-150154 None:intergenic
AAACATGCCATGGTTGCTGC+TGG 0.555478 tig0019465:+152584 Msa1374160:CDS
GATGAGGCATTTGTTGGTAT+GGG 0.557130 tig0019465:+152530 Msa1374160:CDS
ATTGGGGATAATGTTACTGT+AGG 0.557745 tig0019465:+152389 Msa1374160:CDS
GATAGCAACTACAAATATTG+TGG 0.558085 tig0019465:-155191 None:intergenic
TTTATAATAAGATGAAAGGT+GGG 0.558966 tig0019465:+155366 Msa1374160:three_prime_UTR
AAATGCATCTTTATCAACAA+CGG 0.563384 tig0019465:-151882 None:intergenic
AGAGGATCATCCATTTGGTA+TGG 0.566846 tig0019465:+151947 Msa1374160:CDS
TCTCTGTGGTGTGATGGAAT+AGG 0.566944 tig0019465:-150187 None:intergenic
AGAATTTCTCTGTGGTGTGA+TGG 0.568426 tig0019465:-150193 None:intergenic
AACAACATCAGTGTTGGAAG+TGG 0.575912 tig0019465:+152293 Msa1374160:CDS
AAACCTTTGTTTGTTTAGGT+AGG 0.577011 tig0019465:-155023 None:intergenic
CTTACATGGTTGCACTGTTG+AGG 0.578504 tig0019465:+152508 Msa1374160:CDS
GGAAGAGCAATATACAGCGT+TGG 0.581089 tig0019465:+150272 Msa1374160:CDS
ACTGTAATTGATGGCTGACT+GGG 0.582150 tig0019465:-154839 None:intergenic
CACACACATACCTCTCCGGA+TGG 0.584145 tig0019465:-152635 None:intergenic
GAACATTCAGGATAACTCCT+TGG 0.585092 tig0019465:+152319 Msa1374160:CDS
TGGTTGCACTGTTGAGGATG+AGG 0.587457 tig0019465:+152514 Msa1374160:CDS
AATGTGAACATCACCGATGA+CGG 0.591114 tig0019465:-151921 None:intergenic
AAGGGCACCAGCAGCAACCA+TGG 0.591319 tig0019465:-152591 None:intergenic
TCTGGAAGAATGAGCTCTGG+AGG 0.591755 tig0019465:-154994 None:intergenic
TGTACACACACATACCTCTC+CGG 0.592188 tig0019465:-152639 None:intergenic
TTGCGAAGTCAAATTTAAGT+GGG 0.594604 tig0019465:+152348 Msa1374160:CDS
GCAATCCGGCAAAGTTCTTG+AGG 0.596618 tig0019465:+154785 Msa1374160:CDS
GAAGTCAAATTTAAGTGGGA+AGG 0.601013 tig0019465:+152352 Msa1374160:CDS
GGAAAAGGAAAGTTCCCTGA+AGG 0.602605 tig0019465:+155220 Msa1374160:three_prime_UTR
TGTGATGGAATAGGTGAAGA+AGG 0.604030 tig0019465:-150178 None:intergenic
GGTGATGTTCACATTGGCAG+AGG 0.604788 tig0019465:+151929 Msa1374160:CDS
GAGGAGTATGACTCAATGCT+GGG 0.608575 tig0019465:+154955 Msa1374160:CDS
TCTTTAAAGATCTCATTGTG+TGG 0.610119 tig0019465:-155046 None:intergenic
GGACAAGCCATTGATCGCCT+CGG 0.617682 tig0019465:+150314 Msa1374160:CDS
TTTCCGCTTATTCATTCGGG+AGG 0.619619 tig0019465:-150091 None:intergenic
TCCGTGAATTCTGTCTCACA+AGG 0.619899 tig0019465:-152610 None:intergenic
CAATTACAGTAACCTTGCAC+AGG 0.620160 tig0019465:+154852 Msa1374160:CDS
AGAAGGAAAATGGTGGTGAG+TGG 0.620505 tig0019465:-150161 None:intergenic
TGTCCTACCTAAACAAACAA+AGG 0.621913 tig0019465:+155020 Msa1374160:CDS
TGACCTCCCGAATGAATAAG+CGG 0.623321 tig0019465:+150088 Msa1374160:five_prime_UTR
CTGGAAGAATGAGCTCTGGA+GGG 0.626080 tig0019465:-154993 None:intergenic
TGATGAAATTGAGTTTGAGA+AGG 0.626270 tig0019465:+154903 Msa1374160:CDS
GATGTGAACAACATCAGTGT+TGG 0.633059 tig0019465:+152287 Msa1374160:CDS
GAAGTTTGCGCGTAAAGACG+AGG 0.633888 tig0019465:+154936 Msa1374160:CDS
GGTGTTGCCTACTATTATTG+GGG 0.645236 tig0019465:+152373 Msa1374160:CDS
GTCATCGGTGATGTTCACAT+TGG 0.648843 tig0019465:+151923 Msa1374160:CDS
TTCCTTGAAGGCGAGAACCG+AGG 0.652401 tig0019465:-150331 None:intergenic
TGTTGTTGAGAAACATGCCA+TGG 0.655725 tig0019465:+152574 Msa1374160:CDS
TTCACGGATTCCATCCGGAG+AGG 0.692353 tig0019465:+152625 Msa1374160:CDS
ATGGGTGCAACACTACTGGA+TGG 0.693665 tig0019465:+152548 Msa1374160:CDS
TGACTTCGCAACGTGCACCA+AGG 0.699119 tig0019465:-152336 None:intergenic
GTGAACATCACCGATGACGG+AGG 0.701387 tig0019465:-151918 None:intergenic
TGGTATGGATGTGTCATGAG+AGG 0.706530 tig0019465:+151962 Msa1374160:CDS
CCGTGAATTCTGTCTCACAA+GGG 0.725853 tig0019465:-152609 None:intergenic
GATTCAGAAGAATTTCTCTG+TGG 0.740529 tig0019465:-150201 None:intergenic
GCACTGGGCAGGTCACAGTG+CGG 0.741494 tig0019465:+152484 Msa1374160:intron
TAGGTGAAGAAGGAAAATGG+TGG 0.746528 tig0019465:-150168 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTTTATTTTTTTTG+GGG + tig0019465:150807-150826 Msa1374160:intron 10.0%
!!! TTATTTTTTTTGAATGTTTT+TGG - tig0019465:152127-152146 None:intergenic 10.0%
!! AGATAAATTAAAGTAAATTT+GGG - tig0019465:152938-152957 None:intergenic 10.0%
!! TAGATAAATTAAAGTAAATT+TGG - tig0019465:152939-152958 None:intergenic 10.0%
!! TGATAATCATATTAAAATGT+TGG + tig0019465:150468-150487 Msa1374160:intron 15.0%
!! ATTTAACATTATACAAAACA+GGG - tig0019465:150789-150808 None:intergenic 15.0%
!!! TTCTTTTAAAAATAGTTTGT+AGG + tig0019465:151145-151164 Msa1374160:intron 15.0%
!!! TTGATATGTTTTAATTTTCA+TGG - tig0019465:151794-151813 None:intergenic 15.0%
!! AATATAATTTCAACAATACT+CGG + tig0019465:152962-152981 Msa1374160:intron 15.0%
!! ATATTATACATCCAAAATAA+AGG - tig0019465:153066-153085 None:intergenic 15.0%
!!! AAATCGATTTATTTGAATTT+TGG + tig0019465:153143-153162 Msa1374160:intron 15.0%
!!! AAACTTTAAGAATTTTAGAA+GGG - tig0019465:153357-153376 None:intergenic 15.0%
!! TTAAAGTTTCTAAGTATATT+TGG + tig0019465:153368-153387 Msa1374160:intron 15.0%
!! AATCTAATTTAACCATAATA+TGG - tig0019465:153400-153419 None:intergenic 15.0%
!! CATAAATAAAAACAGATTAG+AGG - tig0019465:150450-150469 None:intergenic 20.0%
!! GGAAAATGATTGAAATAAAT+GGG + tig0019465:150654-150673 Msa1374160:intron 20.0%
!! GATTTAACATTATACAAAAC+AGG - tig0019465:150790-150809 None:intergenic 20.0%
!!! ATAAATCTTTTTGTCAAACA+TGG - tig0019465:150897-150916 None:intergenic 20.0%
!! ATGTTTGACAAAAAGATTTA+TGG + tig0019465:150896-150915 Msa1374160:intron 20.0%
!!! TAAAAATAGTTTGTAGGTTT+AGG + tig0019465:151151-151170 Msa1374160:intron 20.0%
!!! ATCTTTCAAGTTGTTAATAT+TGG - tig0019465:151225-151244 None:intergenic 20.0%
!! ATAACTCTATATCATTTAAC+TGG + tig0019465:151722-151741 Msa1374160:intron 20.0%
!! TTTGATGAACATATTTGATA+AGG + tig0019465:151856-151875 Msa1374160:CDS 20.0%
!!! ATATCACATTTTTCCTTTAA+CGG + tig0019465:152449-152468 Msa1374160:intron 20.0%
!! AATTACAATTTCAAAGATCT+AGG + tig0019465:152705-152724 Msa1374160:intron 20.0%
!! TGATTTATTTACATAGCTTT+AGG + tig0019465:152757-152776 Msa1374160:intron 20.0%
!! CTAACTCATATTATATTGTA+TGG - tig0019465:152804-152823 None:intergenic 20.0%
!! CATACAATATAATATGAGTT+AGG + tig0019465:152802-152821 Msa1374160:intron 20.0%
!!! ATCTTTCCAGTATTATATTT+TGG + tig0019465:152844-152863 Msa1374160:intron 20.0%
!!! ATACTTTTTTATGGAGTATT+TGG - tig0019465:152914-152933 None:intergenic 20.0%
!!! AATTTGGGAATACTTTTTTA+TGG - tig0019465:152923-152942 None:intergenic 20.0%
!!! GGTTTCTAAAAGTATTAATT+GGG - tig0019465:153045-153064 None:intergenic 20.0%
!!! AGGTTTCTAAAAGTATTAAT+TGG - tig0019465:153046-153065 None:intergenic 20.0%
!!! ACTTTTAGAAACCTTTATTT+TGG + tig0019465:153052-153071 Msa1374160:intron 20.0%
!! TCTACAATAAAGATATAAAC+AGG + tig0019465:153231-153250 Msa1374160:intron 20.0%
!! TATTGAGTATGAATCTTATA+AGG - tig0019465:153308-153327 None:intergenic 20.0%
!!! GAAACTTTAAGAATTTTAGA+AGG - tig0019465:153358-153377 None:intergenic 20.0%
!! ATTTGGAAATTACCATATTA+TGG + tig0019465:153385-153404 Msa1374160:intron 20.0%
!! TTAGATTGAAAACCTTTAAA+TGG + tig0019465:153413-153432 Msa1374160:intron 20.0%
!! ATCTAGAAATTATCATACTA+TGG + tig0019465:153842-153861 Msa1374160:intron 20.0%
!! TTGCTTTATAATAAGATGAA+AGG + tig0019465:155362-155381 Msa1374160:three_prime_UTR 20.0%
!! TTTATAATAAGATGAAAGGT+GGG + tig0019465:155366-155385 Msa1374160:three_prime_UTR 20.0%
!!! TATTTGTTGTGAATTGATTT+GGG - tig0019465:155398-155417 None:intergenic 20.0%
!!! TTATTTGTTGTGAATTGATT+TGG - tig0019465:155399-155418 None:intergenic 20.0%
!! AGTACTTGTGTTTTATGTAT+TGG + tig0019465:150523-150542 Msa1374160:intron 25.0%
! GGGAAAATGATTGAAATAAA+TGG + tig0019465:150653-150672 Msa1374160:intron 25.0%
! GAAACAACATATTAAGATTC+TGG + tig0019465:150708-150727 Msa1374160:intron 25.0%
!! TTTTTCTACCATAAAGAGAA+TGG - tig0019465:150846-150865 None:intergenic 25.0%
! TTGACAAAAAGATTTATGGT+TGG + tig0019465:150900-150919 Msa1374160:intron 25.0%
! GATACAATTGTGATATGAAA+TGG + tig0019465:150962-150981 Msa1374160:intron 25.0%
!! GAATAGAGAAAATGATTTGT+TGG + tig0019465:151278-151297 Msa1374160:intron 25.0%
!! ATTTGTTGGTATTGAAACTT+GGG + tig0019465:151292-151311 Msa1374160:intron 25.0%
! TTATTCTTGTGTAGAAAGTA+AGG + tig0019465:151340-151359 Msa1374160:intron 25.0%
! AGTTGAATGTTTGAATGAAA+GGG + tig0019465:151363-151382 Msa1374160:intron 25.0%
! TAGTCATGTATGAAATTGTT+TGG + tig0019465:151595-151614 Msa1374160:intron 25.0%
! CACTAAAAACAATAACAAAG+AGG - tig0019465:151822-151841 None:intergenic 25.0%
!!! TGTTATTGTTTTTAGTGTCT+AGG + tig0019465:151825-151844 Msa1374160:intron 25.0%
! AAATGCATCTTTATCAACAA+CGG - tig0019465:151885-151904 None:intergenic 25.0%
! AAGTATTCCATGAATAAATC+TGG - tig0019465:152064-152083 None:intergenic 25.0%
!! AAGACATTTTCTTTAACTAC+TGG + tig0019465:152088-152107 Msa1374160:intron 25.0%
!! AGACATTTTCTTTAACTACT+GGG + tig0019465:152089-152108 Msa1374160:intron 25.0%
!!! TTTGAATGTTTTTGGAATCA+GGG - tig0019465:152119-152138 None:intergenic 25.0%
!!! TTTTGAATGTTTTTGGAATC+AGG - tig0019465:152120-152139 None:intergenic 25.0%
! CAGAGAAATAAACTTTGTAT+TGG - tig0019465:152158-152177 None:intergenic 25.0%
!!! TAATATTTTGGCATTGATCA+TGG + tig0019465:152424-152443 Msa1374160:intron 25.0%
!! TATCACATTTTTCCTTTAAC+GGG + tig0019465:152450-152469 Msa1374160:intron 25.0%
! AATTTCAAAGATCTAGGTAA+AGG + tig0019465:152711-152730 Msa1374160:intron 25.0%
! GTAAAGGAGTGAAATATAAT+TGG + tig0019465:152727-152746 Msa1374160:intron 25.0%
!!! TAGCTTTAGGATAATTTTGT+TGG + tig0019465:152770-152789 Msa1374160:intron 25.0%
! AAGAAGCCAAAATATAATAC+TGG - tig0019465:152853-152872 None:intergenic 25.0%
!!! TATTTGAATTTTGGCATACA+TGG + tig0019465:153152-153171 Msa1374160:intron 25.0%
! TATCACATGATACAAATCAA+TGG + tig0019465:153187-153206 Msa1374160:intron 25.0%
! ATACGTGATATACTTACTAT+GGG - tig0019465:153269-153288 None:intergenic 25.0%
! ATTTACAAGAGTCCATTTAA+AGG - tig0019465:153428-153447 None:intergenic 25.0%
! AAGATGTTATCCTTAATATG+CGG + tig0019465:153478-153497 Msa1374160:intron 25.0%
! ATTAGTGTTCTTCATTGAAA+AGG + tig0019465:153507-153526 Msa1374160:intron 25.0%
!! AAAAAACCGTCTTTGAAAAA+TGG + tig0019465:153539-153558 Msa1374160:intron 25.0%
! AATGGTATGTGAAACAAAAT+AGG + tig0019465:153557-153576 Msa1374160:intron 25.0%
!!! TTATGTGACTTTGGTTTTAA+TGG + tig0019465:153650-153669 Msa1374160:intron 25.0%
! TTTATCTCCTATTGTATACT+TGG - tig0019465:153726-153745 None:intergenic 25.0%
! TTACATCGAAAACATATAAC+TGG + tig0019465:153869-153888 Msa1374160:intron 25.0%
!!! TGCTCTAAATTTTACATCTA+TGG - tig0019465:153895-153914 None:intergenic 25.0%
! AAGATGTTATCCTTATTAAG+TGG + tig0019465:153946-153965 Msa1374160:intron 25.0%
! AGATGTTATCCTTATTAAGT+GGG + tig0019465:153947-153966 Msa1374160:intron 25.0%
! TTAATATAACCGAATGTTGA+TGG + tig0019465:154261-154280 Msa1374160:intron 25.0%
!! AATCTCATCTTATTTCAGTT+CGG - tig0019465:154445-154464 None:intergenic 25.0%
! TCAAACTCAATTTCATCAAA+AGG - tig0019465:154901-154920 None:intergenic 25.0%
!!! ACTTGTTTTGTTCAAATTCA+TGG + tig0019465:155113-155132 Msa1374160:three_prime_UTR 25.0%
!! TTACGTTCCAGATATTATTT+TGG + tig0019465:155320-155339 Msa1374160:three_prime_UTR 25.0%
! CTTTATAATAAGATGAAAGG+TGG + tig0019465:155365-155384 Msa1374160:three_prime_UTR 25.0%
ACATAGAGAAACGGTAATTA+CGG - tig0019465:150415-150434 None:intergenic 30.0%
GATCTTAAGACATAGAGAAA+CGG - tig0019465:150424-150443 None:intergenic 30.0%
! GAATTAGTAGAAGCATATAG+TGG + tig0019465:150676-150695 Msa1374160:intron 30.0%
TTGAGTTTCCATTCTCTTTA+TGG + tig0019465:150835-150854 Msa1374160:intron 30.0%
! TGGCTTTTCTTCAAAAACAT+AGG + tig0019465:150982-151001 Msa1374160:intron 30.0%
GAAAAAGTCATGCTTTCATA+TGG + tig0019465:151245-151264 Msa1374160:intron 30.0%
!! GATTTGTTGGTATTGAAACT+TGG + tig0019465:151291-151310 Msa1374160:intron 30.0%
GAGTTGAATGTTTGAATGAA+AGG + tig0019465:151362-151381 Msa1374160:intron 30.0%
!!! TCTTCAATCTTTTTTCTCAC+AGG + tig0019465:151453-151472 Msa1374160:intron 30.0%
AAAAACATCCTCAACAAAGA+AGG - tig0019465:151516-151535 None:intergenic 30.0%
!! TTTGTTGAGGATGTTTTTGT+TGG + tig0019465:151518-151537 Msa1374160:intron 30.0%
!! TTGTTGAGGATGTTTTTGTT+GGG + tig0019465:151519-151538 Msa1374160:intron 30.0%
! TGATGCATTTGGAATTGAAA+TGG + tig0019465:151564-151583 Msa1374160:intron 30.0%
ACTCTATATCATTTAACTGG+TGG + tig0019465:151725-151744 Msa1374160:intron 30.0%
TCATTTAACTGGTGGAAAAA+TGG + tig0019465:151733-151752 Msa1374160:intron 30.0%
TGGTGGAAAAATGGTTTAAT+GGG + tig0019465:151742-151761 Msa1374160:intron 30.0%
AATGCATCTTTATCAACAAC+GGG - tig0019465:151884-151903 None:intergenic 30.0%
CCAAAAGTTTAATGCCTAAT+TGG - tig0019465:152005-152024 None:intergenic 30.0%
! CCAATTAGGCATTAAACTTT+TGG + tig0019465:152002-152021 Msa1374160:intron 30.0%
! TTAGGCATTAAACTTTTGGT+TGG + tig0019465:152006-152025 Msa1374160:intron 30.0%
!!! CTTTTGGTTGGTTTATCATT+TGG + tig0019465:152018-152037 Msa1374160:intron 30.0%
TGAGTAACCAGATTTATTCA+TGG + tig0019465:152054-152073 Msa1374160:intron 30.0%
! GACATTTTCTTTAACTACTG+GGG + tig0019465:152090-152109 Msa1374160:intron 30.0%
TCAAACTTCACTTTATGCTT+AGG + tig0019465:152263-152282 Msa1374160:intron 30.0%
TTGCGAAGTCAAATTTAAGT+GGG + tig0019465:152348-152367 Msa1374160:CDS 30.0%
ACATTATCCCCAATAATAGT+AGG - tig0019465:152383-152402 None:intergenic 30.0%
! TGAGTCTGTGAGTAATATTT+TGG + tig0019465:152412-152431 Msa1374160:intron 30.0%
!! CAAATTTTAACACCCGTTAA+AGG - tig0019465:152465-152484 None:intergenic 30.0%
TATATGCGATTATGTGTGTT+CGG + tig0019465:152670-152689 Msa1374160:intron 30.0%
CATACGTGATATACTTACTA+TGG - tig0019465:153270-153289 None:intergenic 30.0%
AGATGTTATCCTTAATATGC+GGG + tig0019465:153479-153498 Msa1374160:intron 30.0%
TAATTTATGCCCGCATATTA+AGG - tig0019465:153491-153510 None:intergenic 30.0%
!! CACATACCATTTTTCAAAGA+CGG - tig0019465:153548-153567 None:intergenic 30.0%
!!! AGTTTTAACTGTAGAGAAGA+TGG + tig0019465:153615-153634 Msa1374160:intron 30.0%
AATGTCATCTTATGTGACTT+TGG + tig0019465:153641-153660 Msa1374160:intron 30.0%
TTATCCTTATTAAGTGGGAA+TGG + tig0019465:153952-153971 Msa1374160:intron 30.0%
AAAACCATTCCCACTTAATA+AGG - tig0019465:153959-153978 None:intergenic 30.0%
! GCATACAATTTTGCAAAGAT+GGG - tig0019465:154013-154032 None:intergenic 30.0%
ACCAATTCGATAAAAATCTG+AGG + tig0019465:154063-154082 Msa1374160:intron 30.0%
! ACCTCAGATTTTTATCGAAT+TGG - tig0019465:154067-154086 None:intergenic 30.0%
CGTTATCACTGTAGAAAATA+TGG + tig0019465:154087-154106 Msa1374160:intron 30.0%
TGGTTGAATCTTATTCGATT+TGG + tig0019465:154107-154126 Msa1374160:intron 30.0%
CTTCTTCCTATTGTATACTT+GGG - tig0019465:154191-154210 None:intergenic 30.0%
ACTTCTTCCTATTGTATACT+TGG - tig0019465:154192-154211 None:intergenic 30.0%
AGTGGGAACAATAAAGAATA+GGG + tig0019465:154221-154240 Msa1374160:intron 30.0%
ATAAAGGAGTCCATTATGTT+TGG + tig0019465:154343-154362 Msa1374160:intron 30.0%
TAAAGGAGTCCATTATGTTT+GGG + tig0019465:154344-154363 Msa1374160:intron 30.0%
! TAAGCTTTTCCCAAACATAA+TGG - tig0019465:154356-154375 None:intergenic 30.0%
ATTATGTTTGGGAAAAGCTT+AGG + tig0019465:154355-154374 Msa1374160:intron 30.0%
TATTTCAGTTCGGATAATTG+AGG - tig0019465:154435-154454 None:intergenic 30.0%
TAGCTATAGGACTATTTGTT+AGG - tig0019465:154480-154499 None:intergenic 30.0%
ACAAATAGTCCTATAGCTAA+AGG + tig0019465:154481-154500 Msa1374160:intron 30.0%
GAGTACATGATATGAAGTTA+TGG + tig0019465:154540-154559 Msa1374160:intron 30.0%
! TGCAAATATAGGCAATTTTG+TGG - tig0019465:154754-154773 None:intergenic 30.0%
ACAAAATTGCCTATATTTGC+AGG + tig0019465:154753-154772 Msa1374160:intron 30.0%
TGATGAAATTGAGTTTGAGA+AGG + tig0019465:154903-154922 Msa1374160:CDS 30.0%
! AAACCTTTGTTTGTTTAGGT+AGG - tig0019465:155026-155045 None:intergenic 30.0%
! TCTTTAAAGATCTCATTGTG+TGG - tig0019465:155049-155068 None:intergenic 30.0%
TTTGTTCAAATTCATGGAAG+AGG + tig0019465:155119-155138 Msa1374160:three_prime_UTR 30.0%
TTGTTCAAATTCATGGAAGA+GGG + tig0019465:155120-155139 Msa1374160:three_prime_UTR 30.0%
!! GGGACATGTTTGTTATTATT+GGG - tig0019465:155159-155178 None:intergenic 30.0%
!! TGGGACATGTTTGTTATTAT+TGG - tig0019465:155160-155179 None:intergenic 30.0%
GATAGCAACTACAAATATTG+TGG - tig0019465:155194-155213 None:intergenic 30.0%
CTGATGACCAAAATAATATC+TGG - tig0019465:155330-155349 None:intergenic 30.0%
TACTTTCCGCTTATTCATTC+GGG - tig0019465:150097-150116 None:intergenic 35.0%
GTACTTTCCGCTTATTCATT+CGG - tig0019465:150098-150117 None:intergenic 35.0%
!! ATGAATAAGCGGAAAGTACT+AGG + tig0019465:150099-150118 Msa1374160:five_prime_UTR 35.0%
GAATAGGTGAAGAAGGAAAA+TGG - tig0019465:150174-150193 None:intergenic 35.0%
GATTCAGAAGAATTTCTCTG+TGG - tig0019465:150204-150223 None:intergenic 35.0%
TTCGATGGAGAATTCGAATT+TGG - tig0019465:150239-150258 None:intergenic 35.0%
TTCGAATTCTCCATCGAAAA+TGG + tig0019465:150241-150260 Msa1374160:exon 35.0%
TCGAATTCTCCATCGAAAAT+GGG + tig0019465:150242-150261 Msa1374160:exon 35.0%
!! CAATATACAGCGTTGGATTT+TGG + tig0019465:150279-150298 Msa1374160:CDS 35.0%
AGTTTATGATTGCAGTGTAG+TGG + tig0019465:150632-150651 Msa1374160:intron 35.0%
GTTTATGATTGCAGTGTAGT+GGG + tig0019465:150633-150652 Msa1374160:intron 35.0%
GGAGAATTTATGTAAGATCG+TGG + tig0019465:150729-150748 Msa1374160:intron 35.0%
TGGTATAGTTGAAACTCCTA+GGG + tig0019465:150749-150768 Msa1374160:intron 35.0%
! AAAAACTGTGTTGTTGAGCT+TGG + tig0019465:150861-150880 Msa1374160:intron 35.0%
AAAGATTTATGGTTGGAGAG+TGG + tig0019465:150907-150926 Msa1374160:intron 35.0%
TTTGTAGGTTTAGGTCTGAT+TGG + tig0019465:151160-151179 Msa1374160:intron 35.0%
TCATACAGTTGAAACACTTG+AGG - tig0019465:151420-151439 None:intergenic 35.0%
AAGTAGTTCCTTCTTTGTTG+AGG + tig0019465:151505-151524 Msa1374160:intron 35.0%
!! GTAGTGTTGATTGATGCATT+TGG + tig0019465:151553-151572 Msa1374160:intron 35.0%
TGTTTGGTCATTATCTTGCT+AGG + tig0019465:151611-151630 Msa1374160:intron 35.0%
CTGGTGGAAAAATGGTTTAA+TGG + tig0019465:151741-151760 Msa1374160:intron 35.0%
GCTCTTTCACTTTACCAATT+AGG + tig0019465:151988-152007 Msa1374160:intron 35.0%
GTTGCGAAGTCAAATTTAAG+TGG + tig0019465:152347-152366 Msa1374160:CDS 35.0%
GAAGTCAAATTTAAGTGGGA+AGG + tig0019465:152352-152371 Msa1374160:CDS 35.0%
!! AAGGTGTTGCCTACTATTAT+TGG + tig0019465:152371-152390 Msa1374160:CDS 35.0%
! AGGTGTTGCCTACTATTATT+GGG + tig0019465:152372-152391 Msa1374160:CDS 35.0%
ATTGGGGATAATGTTACTGT+AGG + tig0019465:152389-152408 Msa1374160:CDS 35.0%
! CTTGTAAATTTAGAGCTTCG+TGG + tig0019465:153439-153458 Msa1374160:intron 35.0%
! TAAATTTAGAGCTTCGTGGA+CGG + tig0019465:153443-153462 Msa1374160:intron 35.0%
AAACATTCGAGAGAGAATTG+AGG + tig0019465:153591-153610 Msa1374160:intron 35.0%
CACTAGTACAAGATAGTGTT+GGG + tig0019465:153689-153708 Msa1374160:intron 35.0%
! CGCATACAATTTTGCAAAGA+TGG - tig0019465:154014-154033 None:intergenic 35.0%
AATTGTATGCGAGACAAAAC+AGG + tig0019465:154023-154042 Msa1374160:intron 35.0%
! TCTAACATTTTCCTCCTTAC+GGG - tig0019465:154158-154177 None:intergenic 35.0%
! GTCTAACATTTTCCTCCTTA+CGG - tig0019465:154159-154178 None:intergenic 35.0%
CTATTGTATACTTGGGTAAC+TGG - tig0019465:154184-154203 None:intergenic 35.0%
CAGTTACCCAAGTATACAAT+AGG + tig0019465:154182-154201 Msa1374160:intron 35.0%
GAGTGGGAACAATAAAGAAT+AGG + tig0019465:154220-154239 Msa1374160:intron 35.0%
TTAACAGAACATGTGAGAAC+TGG + tig0019465:154316-154335 Msa1374160:intron 35.0%
TAACAGAACATGTGAGAACT+GGG + tig0019465:154317-154336 Msa1374160:intron 35.0%
TATTCTTTAATTCCTCGCAC+TGG + tig0019465:154402-154421 Msa1374160:intron 35.0%
!! GGTATGTGATTGTTGTTTGT+GGG + tig0019465:154606-154625 Msa1374160:intron 35.0%
ATTGCCTATATTTGCAGGTT+TGG + tig0019465:154758-154777 Msa1374160:intron 35.0%
TTGCCTATATTTGCAGGTTT+GGG + tig0019465:154759-154778 Msa1374160:intron 35.0%
TGCAAGGTTACTGTAATTGA+TGG - tig0019465:154851-154870 None:intergenic 35.0%
CTCAATTTCATCAAAAGGCT+TGG - tig0019465:154896-154915 None:intergenic 35.0%
TGTTTAGGTAGGACATTATC+TGG - tig0019465:155015-155034 None:intergenic 35.0%
TGTCCTACCTAAACAAACAA+AGG + tig0019465:155020-155039 Msa1374160:CDS 35.0%
! GTGGAAACCTTTGTTTGTTT+AGG - tig0019465:155030-155049 None:intergenic 35.0%
TATTGTGGAGCTATTGATCT+GGG - tig0019465:155179-155198 None:intergenic 35.0%
ATATTGTGGAGCTATTGATC+TGG - tig0019465:155180-155199 None:intergenic 35.0%
TTTGTAGTTGCTATCTACTC+TGG + tig0019465:155199-155218 Msa1374160:three_prime_UTR 35.0%
TAGGTGAAGAAGGAAAATGG+TGG - tig0019465:150171-150190 None:intergenic 40.0%
! TGTGATGGAATAGGTGAAGA+AGG - tig0019465:150181-150200 None:intergenic 40.0%
AGAATTTCTCTGTGGTGTGA+TGG - tig0019465:150196-150215 None:intergenic 40.0%
GCTGTATATTGCTCTTCCTA+GGG - tig0019465:150270-150289 None:intergenic 40.0%
! GGATTTTGGATTCGAGAAAC+TGG + tig0019465:150293-150312 Msa1374160:CDS 40.0%
GGAAGTAGTAGTTTCCTTGA+AGG - tig0019465:150346-150365 None:intergenic 40.0%
AAAGTGACTAACGCTGTTCT+TGG - tig0019465:150367-150386 None:intergenic 40.0%
TTGGAAGCTCAGCGAAATAA+TGG + tig0019465:150542-150561 Msa1374160:intron 40.0%
TGGAAGCTCAGCGAAATAAT+GGG + tig0019465:150543-150562 Msa1374160:intron 40.0%
GTGGTATAGTTGAAACTCCT+AGG + tig0019465:150748-150767 Msa1374160:intron 40.0%
! TGTGTTGTTGAGCTTGGTAT+TGG + tig0019465:150867-150886 Msa1374160:intron 40.0%
CATGCTTTCATATGGACTTC+AGG + tig0019465:151253-151272 Msa1374160:intron 40.0%
AATGTGAACATCACCGATGA+CGG - tig0019465:151924-151943 None:intergenic 40.0%
AGAGGATCATCCATTTGGTA+TGG + tig0019465:151947-151966 Msa1374160:CDS 40.0%
CATGACACATCCATACCAAA+TGG - tig0019465:151960-151979 None:intergenic 40.0%
GATGTGAACAACATCAGTGT+TGG + tig0019465:152287-152306 Msa1374160:CDS 40.0%
! AACAACATCAGTGTTGGAAG+TGG + tig0019465:152293-152312 Msa1374160:CDS 40.0%
GAACATTCAGGATAACTCCT+TGG + tig0019465:152319-152338 Msa1374160:CDS 40.0%
! GGTGTTGCCTACTATTATTG+GGG + tig0019465:152373-152392 Msa1374160:CDS 40.0%
ACGGGTGTTAAAATTTGCAC+TGG + tig0019465:152468-152487 Msa1374160:intron 40.0%
CGGGTGTTAAAATTTGCACT+GGG + tig0019465:152469-152488 Msa1374160:intron 40.0%
TGTTAAAATTTGCACTGGGC+AGG + tig0019465:152473-152492 Msa1374160:intron 40.0%
! GATGAGGCATTTGTTGGTAT+GGG + tig0019465:152530-152549 Msa1374160:CDS 40.0%
TGTTGTTGAGAAACATGCCA+TGG + tig0019465:152574-152593 Msa1374160:CDS 40.0%
GTATGTGTGTGTACATGTTC+AGG + tig0019465:152647-152666 Msa1374160:intron 40.0%
GCACTAGTACAAGATAGTGT+TGG + tig0019465:153688-153707 Msa1374160:intron 40.0%
TTGTATACTTGGCCAACTGA+TGG - tig0019465:153715-153734 None:intergenic 40.0%
CAGTTGGCCAAGTATACAAT+AGG + tig0019465:153716-153735 Msa1374160:intron 40.0%
! AAAAGAGCACAAGCAATGAG+AGG + tig0019465:153743-153762 Msa1374160:intron 40.0%
! AAAGAGCACAAGCAATGAGA+GGG + tig0019465:153744-153763 Msa1374160:intron 40.0%
! TTTAGAGCAGTTTGCAAGAC+TGG + tig0019465:153906-153925 Msa1374160:intron 40.0%
TTGTATACTTGGGTAACTGG+TGG - tig0019465:154181-154200 None:intergenic 40.0%
GAAGAAGTCAACTAGAGAGT+GGG + tig0019465:154204-154223 Msa1374160:intron 40.0%
!! TAACCGAATGTTGATGGTTG+AGG + tig0019465:154267-154286 Msa1374160:intron 40.0%
!! AACCGAATGTTGATGGTTGA+GGG + tig0019465:154268-154287 Msa1374160:intron 40.0%
TGTGAGAACTGGGAAGATAA+AGG + tig0019465:154327-154346 Msa1374160:intron 40.0%
TTTGGGAAAAGCTTAGGAAG+AGG + tig0019465:154361-154380 Msa1374160:intron 40.0%
!! GGGTATGTGATTGTTGTTTG+TGG + tig0019465:154605-154624 Msa1374160:intron 40.0%
CAACAAAAGTAGACCATTCG+TGG + tig0019465:154638-154657 Msa1374160:intron 40.0%
CTATCACAATACACCACGAA+TGG - tig0019465:154654-154673 None:intergenic 40.0%
! ACTGTAATTGATGGCTGACT+GGG - tig0019465:154842-154861 None:intergenic 40.0%
! TACTGTAATTGATGGCTGAC+TGG - tig0019465:154843-154862 None:intergenic 40.0%
CAATTACAGTAACCTTGCAC+AGG + tig0019465:154852-154871 Msa1374160:CDS 40.0%
CTTTACGCGCAAACTTCTTT+CGG - tig0019465:154933-154952 None:intergenic 40.0%
TTATCTGGAAGAATGAGCTC+TGG - tig0019465:155000-155019 None:intergenic 40.0%
! GTTGCTATCTACTCTGGAAA+AGG + tig0019465:155205-155224 Msa1374160:three_prime_UTR 40.0%
CATGTGAAACTCACATGCAT+TGG - tig0019465:155278-155297 None:intergenic 40.0%
TGACCTCCCGAATGAATAAG+CGG + tig0019465:150088-150107 Msa1374160:five_prime_UTR 45.0%
TTTCCGCTTATTCATTCGGG+AGG - tig0019465:150094-150113 None:intergenic 45.0%
! AAATGGTGGTGAGTGGAAGA+AGG - tig0019465:150157-150176 None:intergenic 45.0%
! AGAAGGAAAATGGTGGTGAG+TGG - tig0019465:150164-150183 None:intergenic 45.0%
! TCTCTGTGGTGTGATGGAAT+AGG - tig0019465:150190-150209 None:intergenic 45.0%
CGCTGTATATTGCTCTTCCT+AGG - tig0019465:150271-150290 None:intergenic 45.0%
GGAAGAGCAATATACAGCGT+TGG + tig0019465:150272-150291 Msa1374160:CDS 45.0%
CTCCTAGGGAAAATTACTGC+AGG + tig0019465:150763-150782 Msa1374160:intron 45.0%
GTCATCGGTGATGTTCACAT+TGG + tig0019465:151923-151942 Msa1374160:CDS 45.0%
TTGGCAGAGGATCATCCATT+TGG + tig0019465:151942-151961 Msa1374160:CDS 45.0%
TGGTATGGATGTGTCATGAG+AGG + tig0019465:151962-151981 Msa1374160:CDS 45.0%
TGGAAGTGGAACGAACATTC+AGG + tig0019465:152307-152326 Msa1374160:CDS 45.0%
CTTACATGGTTGCACTGTTG+AGG + tig0019465:152508-152527 Msa1374160:CDS 45.0%
! GTTGAGGATGAGGCATTTGT+TGG + tig0019465:152524-152543 Msa1374160:CDS 45.0%
! GGATGAGGCATTTGTTGGTA+TGG + tig0019465:152529-152548 Msa1374160:CDS 45.0%
CCGTGAATTCTGTCTCACAA+GGG - tig0019465:152612-152631 None:intergenic 45.0%
CCCTTGTGAGACAGAATTCA+CGG + tig0019465:152609-152628 Msa1374160:CDS 45.0%
TCCGTGAATTCTGTCTCACA+AGG - tig0019465:152613-152632 None:intergenic 45.0%
CAGAATTCACGGATTCCATC+CGG + tig0019465:152620-152639 Msa1374160:CDS 45.0%
TGTACACACACATACCTCTC+CGG - tig0019465:152642-152661 None:intergenic 45.0%
TGCGATTATGTGTGTTCGGT+TGG + tig0019465:152674-152693 Msa1374160:intron 45.0%
GCGATTATGTGTGTTCGGTT+GGG + tig0019465:152675-152694 Msa1374160:intron 45.0%
! AGTGTCGAGCAAGAATACAG+TGG + tig0019465:153778-153797 Msa1374160:intron 45.0%
GTGTCGAGCAAGAATACAGT+GGG + tig0019465:153779-153798 Msa1374160:intron 45.0%
GGAAGAAGTCAACTAGAGAG+TGG + tig0019465:154203-154222 Msa1374160:intron 45.0%
CTCCCTCAACCATCAACATT+CGG - tig0019465:154273-154292 None:intergenic 45.0%
ATGGTTGAGGGAGTAACGAT+GGG + tig0019465:154280-154299 Msa1374160:intron 45.0%
GGAAAAGCTTAGGAAGAGGT+GGG + tig0019465:154365-154384 Msa1374160:intron 45.0%
AGTCCTATAGCTAAAGGCAG+AGG + tig0019465:154487-154506 Msa1374160:intron 45.0%
GTCCTATAGCTAAAGGCAGA+GGG + tig0019465:154488-154507 Msa1374160:intron 45.0%
!! TGGTGTTGATCGATCCATGT+TGG + tig0019465:154560-154579 Msa1374160:intron 45.0%
! ACTGCCTCTGGTGATGAAAA+GGG + tig0019465:154585-154604 Msa1374160:intron 45.0%
! CATACCCTTTTCATCACCAG+AGG - tig0019465:154592-154611 None:intergenic 45.0%
CTGCCCAAACCTGCAAATAT+AGG - tig0019465:154765-154784 None:intergenic 45.0%
CTATATTTGCAGGTTTGGGC+AGG + tig0019465:154763-154782 Msa1374160:intron 45.0%
AGCTTCCTCAAGAACTTTGC+CGG - tig0019465:154793-154812 None:intergenic 45.0%
! GAGGAGTATGACTCAATGCT+GGG + tig0019465:154955-154974 Msa1374160:CDS 45.0%
GGAAAAGGAAAGTTCCCTGA+AGG + tig0019465:155220-155239 Msa1374160:three_prime_UTR 45.0%
TCCACATACACGATCCTTCA+GGG - tig0019465:155237-155256 None:intergenic 45.0%
ATCCACATACACGATCCTTC+AGG - tig0019465:155238-155257 None:intergenic 45.0%
!!! AAATCATTTTTTATTTTTTT+TGG + tig0019465:150805-150824 Msa1374160:intron 5.0%
!!! AATCATTTTTTATTTTTTTT+GGG + tig0019465:150806-150825 Msa1374160:intron 5.0%
! CCTAGGGTTCCCATTTTCGA+TGG - tig0019465:150254-150273 None:intergenic 50.0%
CCATCGAAAATGGGAACCCT+AGG + tig0019465:150251-150270 Msa1374160:exon 50.0%
! GGCCTGCAGTAATTTTCCCT+AGG - tig0019465:150768-150787 None:intergenic 50.0%
GGTGATGTTCACATTGGCAG+AGG + tig0019465:151929-151948 Msa1374160:CDS 50.0%
TGGTTGCACTGTTGAGGATG+AGG + tig0019465:152514-152533 Msa1374160:CDS 50.0%
TGGTATGGGTGCAACACTAC+TGG + tig0019465:152544-152563 Msa1374160:CDS 50.0%
ATGGGTGCAACACTACTGGA+TGG + tig0019465:152548-152567 Msa1374160:CDS 50.0%
AAACATGCCATGGTTGCTGC+TGG + tig0019465:152584-152603 Msa1374160:CDS 50.0%
! GATAGTGTTGGGCCATCAGT+TGG + tig0019465:153700-153719 Msa1374160:intron 50.0%
ACAAGCAATGAGAGGGAGAG+TGG + tig0019465:153751-153770 Msa1374160:intron 50.0%
CAAGCAATGAGAGGGAGAGT+GGG + tig0019465:153752-153771 Msa1374160:intron 50.0%
GATGGTTGAGGGAGTAACGA+TGG + tig0019465:154279-154298 Msa1374160:intron 50.0%
TGGTTGAGGGAGTAACGATG+GGG + tig0019465:154281-154300 Msa1374160:intron 50.0%
GGGAAAAGCTTAGGAAGAGG+TGG + tig0019465:154364-154383 Msa1374160:intron 50.0%
TGAGGAATTTGACCAGTGCG+AGG - tig0019465:154417-154436 None:intergenic 50.0%
CTCCCTCTGCCTTTAGCTAT+AGG - tig0019465:154493-154512 None:intergenic 50.0%
! GACTGCCTCTGGTGATGAAA+AGG + tig0019465:154584-154603 Msa1374160:intron 50.0%
GCAATCCGGCAAAGTTCTTG+AGG + tig0019465:154785-154804 Msa1374160:CDS 50.0%
! GCTTGGCATTTTCAGCTGCA+TGG - tig0019465:154879-154898 None:intergenic 50.0%
GAAGTTTGCGCGTAAAGACG+AGG + tig0019465:154936-154955 Msa1374160:CDS 50.0%
! CGAGGAGTATGACTCAATGC+TGG + tig0019465:154954-154973 Msa1374160:CDS 50.0%
!! CTGGAAGAATGAGCTCTGGA+GGG - tig0019465:154996-155015 None:intergenic 50.0%
! TCTGGAAGAATGAGCTCTGG+AGG - tig0019465:154997-155016 None:intergenic 50.0%
TCCCTGAAGGATCGTGTATG+TGG + tig0019465:155233-155252 Msa1374160:three_prime_UTR 50.0%
GGACAAGCCATTGATCGCCT+CGG + tig0019465:150314-150333 Msa1374160:CDS 55.0%
TTCCTTGAAGGCGAGAACCG+AGG - tig0019465:150334-150353 None:intergenic 55.0%
! GTGAACATCACCGATGACGG+AGG - tig0019465:151921-151940 None:intergenic 55.0%
TGACTTCGCAACGTGCACCA+AGG - tig0019465:152339-152358 None:intergenic 55.0%
GGTCACAGTGCGGTCTTACA+TGG + tig0019465:152494-152513 Msa1374160:intron 55.0%
TTCACGGATTCCATCCGGAG+AGG + tig0019465:152625-152644 Msa1374160:CDS 55.0%
CACACACATACCTCTCCGGA+TGG - tig0019465:152638-152657 None:intergenic 55.0%
!! AGCTTCGTGGACGGATTGCA+AGG + tig0019465:153452-153471 Msa1374160:intron 55.0%
! GATGTCTTGAAGCGCCCGTA+AGG + tig0019465:154141-154160 Msa1374160:intron 55.0%
!! TCCATGTTGGTGACTGCCTC+TGG + tig0019465:154573-154592 Msa1374160:intron 55.0%
ACCAGAGGCAGTCACCAACA+TGG - tig0019465:154577-154596 None:intergenic 55.0%
GCGAGAACCGAGGCGATCAA+TGG - tig0019465:150324-150343 None:intergenic 60.0%
!! ACCGATGACGGAGGCACTTG+GGG - tig0019465:151912-151931 None:intergenic 60.0%
!! CACCGATGACGGAGGCACTT+GGG - tig0019465:151913-151932 None:intergenic 60.0%
!! TCACCGATGACGGAGGCACT+TGG - tig0019465:151914-151933 None:intergenic 60.0%
!! AAGGGCACCAGCAGCAACCA+TGG - tig0019465:152594-152613 None:intergenic 60.0%
! GTCTTGAAGCGCCCGTAAGG+AGG + tig0019465:154144-154163 Msa1374160:intron 60.0%
GCAGGTTTGGGCAGGCAATC+CGG + tig0019465:154771-154790 Msa1374160:intron 60.0%
CAGCTGCATGGACCTGTGCA+AGG - tig0019465:154867-154886 None:intergenic 60.0%
CGCCTCGGTTCTCGCCTTCA+AGG + tig0019465:150329-150348 Msa1374160:CDS 65.0%
GCCCCAAGTGCCTCCGTCAT+CGG + tig0019465:151908-151927 Msa1374160:CDS 65.0%
GCACTGGGCAGGTCACAGTG+CGG + tig0019465:152484-152503 Msa1374160:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019465 gene 150082 155472 150082 ID=Msa1374160;Name=Msa1374160
tig0019465 mRNA 150082 155472 150082 ID=Msa1374160-mRNA-1;Parent=Msa1374160;Name=Msa1374160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|1|1|5|416|272
tig0019465 exon 150082 150374 150082 ID=Msa1374160-mRNA-1:exon:3676;Parent=Msa1374160-mRNA-1
tig0019465 exon 151840 151983 151840 ID=Msa1374160-mRNA-1:exon:3677;Parent=Msa1374160-mRNA-1
tig0019465 exon 152285 152410 152285 ID=Msa1374160-mRNA-1:exon:3678;Parent=Msa1374160-mRNA-1
tig0019465 exon 152495 152646 152495 ID=Msa1374160-mRNA-1:exon:3679;Parent=Msa1374160-mRNA-1
tig0019465 exon 154775 155472 154775 ID=Msa1374160-mRNA-1:exon:3680;Parent=Msa1374160-mRNA-1
tig0019465 five_prime_UTR 150082 150259 150082 ID=Msa1374160-mRNA-1:five_prime_utr;Parent=Msa1374160-mRNA-1
tig0019465 CDS 150260 150374 150260 ID=Msa1374160-mRNA-1:cds;Parent=Msa1374160-mRNA-1
tig0019465 CDS 151840 151983 151840 ID=Msa1374160-mRNA-1:cds;Parent=Msa1374160-mRNA-1
tig0019465 CDS 152285 152410 152285 ID=Msa1374160-mRNA-1:cds;Parent=Msa1374160-mRNA-1
tig0019465 CDS 152495 152646 152495 ID=Msa1374160-mRNA-1:cds;Parent=Msa1374160-mRNA-1
tig0019465 CDS 154775 155056 154775 ID=Msa1374160-mRNA-1:cds;Parent=Msa1374160-mRNA-1
tig0019465 three_prime_UTR 155057 155472 155057 ID=Msa1374160-mRNA-1:three_prime_utr;Parent=Msa1374160-mRNA-1
Gene Sequence

>Msa1374160

ATGGGAACCCTAGGAAGAGCAATATACAGCGTTGGATTTTGGATTCGAGAAACTGGACAAGCCATTGATCGCCTCGGTTCTCGCCTTCAAGGAAACTACTACTTCCAAGAACAGCTGTCTAGGCATCGAACTTTGATGAACATATTTGATAAGGTTCCCGTTGTTGATAAAGATGCATTTATTGCCCCAAGTGCCTCCGTCATCGGTGATGTTCACATTGGCAGAGGATCATCCATTTGGTATGGATGTGTCATGAGAGGTGATGTGAACAACATCAGTGTTGGAAGTGGAACGAACATTCAGGATAACTCCTTGGTGCACGTTGCGAAGTCAAATTTAAGTGGGAAGGTGTTGCCTACTATTATTGGGGATAATGTTACTGTAGGTCACAGTGCGGTCTTACATGGTTGCACTGTTGAGGATGAGGCATTTGTTGGTATGGGTGCAACACTACTGGATGGTGTTGTTGTTGAGAAACATGCCATGGTTGCTGCTGGTGCCCTTGTGAGACAGAATTCACGGATTCCATCCGGAGAGGTTTGGGCAGGCAATCCGGCAAAGTTCTTGAGGAAGCTCACTGCTGAAGAGATATCATTTATCTCCCAGTCAGCCATCAATTACAGTAACCTTGCACAGGTCCATGCAGCTGAAAATGCCAAGCCTTTTGATGAAATTGAGTTTGAGAAGGTGCTCCGAAAGAAGTTTGCGCGTAAAGACGAGGAGTATGACTCAATGCTGGGCGTTGTTCGTGAGATCCCTCCAGAGCTCATTCTTCCAGATAATGTCCTACCTAAACAAACAAAGGTTTCCACACAATGA
Protein sequence

>Msa1374160

MGTLGRAIYSVGFWIRETGQAIDRLGSRLQGNYYFQEQLSRHRTLMNIFDKVPVVDKDAFIAPSASVIGDVHIGRGSSIWYGCVMRGDVNNISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNSRIPSGEVWAGNPAKFLRKLTAEEISFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLRKKFARKDEEYDSMLGVVREIPPELILPDNVLPKQTKVSTQ*