Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382660 | XP_013466129.1 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382660 | sp|Q9FWR5|GCA1_ARATH | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.01e-175 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382660 | I3SYK2 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003860 | Msa1382660 | 0.990053 | 7.654991e-181 | -8.615850e-47 |
| Msa1374160 | Msa1382660 | 0.996787 | 3.165052e-232 | -8.615850e-47 |
| Msa0146410 | Msa1382660 | 0.871611 | 5.989855e-67 | -8.615850e-47 |
| Msa1043640 | Msa1382660 | 0.947920 | 2.623288e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382660 | MtrunA17_Chr1g0155361 | 98.162 | 272 | 5 | 0 | 1 | 272 | 1 | 272 | 0.0 | 554 |
| Msa1382660 | MtrunA17_Chr3g0141721 | 84.701 | 268 | 40 | 1 | 1 | 268 | 1 | 267 | 2.71e-171 | 474 |
| Msa1382660 | MtrunA17_Chr5g0404561 | 79.336 | 271 | 54 | 2 | 1 | 270 | 1 | 270 | 1.40e-159 | 444 |
| Msa1382660 | MtrunA17_Chr8g0386291 | 36.792 | 212 | 127 | 2 | 17 | 228 | 37 | 241 | 3.83e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1382660 | AT1G19580.1 | 85.874 | 269 | 37 | 1 | 1 | 268 | 1 | 269 | 2.05e-176 | 487 |
| Msa1382660 | AT1G47260.1 | 81.061 | 264 | 50 | 0 | 1 | 264 | 1 | 264 | 9.89e-167 | 462 |
| Msa1382660 | AT5G66510.1 | 74.340 | 265 | 59 | 3 | 1 | 265 | 1 | 256 | 4.92e-147 | 412 |
| Msa1382660 | AT5G66510.2 | 71.377 | 276 | 59 | 4 | 1 | 265 | 1 | 267 | 2.67e-143 | 403 |
| Msa1382660 | AT1G19580.2 | 88.827 | 179 | 20 | 0 | 1 | 179 | 1 | 179 | 7.84e-119 | 339 |
| Msa1382660 | AT5G63510.1 | 38.503 | 187 | 114 | 1 | 42 | 228 | 55 | 240 | 5.24e-41 | 142 |
| Msa1382660 | AT3G48680.1 | 37.968 | 187 | 115 | 1 | 42 | 228 | 59 | 244 | 1.95e-40 | 140 |
| Msa1382660 | AT5G63510.2 | 35.047 | 214 | 111 | 4 | 42 | 228 | 55 | 267 | 3.54e-35 | 127 |
| Msa1382660 | AT1G47420.1 | 51.163 | 86 | 29 | 1 | 1 | 86 | 1 | 73 | 1.40e-17 | 80.5 |
Find 121 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGACATGTTTGTTATTAT+TGG | 0.144123 | tig0020520:-120813 | None:intergenic |
| CAATATACAGCGTTGGATTT+TGG | 0.184113 | tig0020520:+115933 | Msa1382660:CDS |
| TTCGAATTCTCCATCGAAAA+TGG | 0.194976 | tig0020520:+115895 | Msa1382660:exon |
| TTCGATGGAGAATTCGAATT+TGG | 0.210598 | tig0020520:-115890 | None:intergenic |
| TTCATTCGGGAGGTCAATTT+CGG | 0.252936 | tig0020520:-115735 | None:intergenic |
| TTACGTTCCAGATATTATTT+TGG | 0.270771 | tig0020520:+120976 | Msa1382660:three_prime_UTR |
| AAGGTGTTGCCTACTATTAT+TGG | 0.284723 | tig0020520:+118027 | Msa1382660:CDS |
| AGGTGTTGCCTACTATTATT+GGG | 0.302756 | tig0020520:+118028 | Msa1382660:CDS |
| TTATTTGTTGTGAATTGATT+TGG | 0.309682 | tig0020520:-121052 | None:intergenic |
| AAAGTGACTAACGCTGTTCT+TGG | 0.312952 | tig0020520:-116018 | None:intergenic |
| TGTTTAGGTAGGACATTATC+TGG | 0.316419 | tig0020520:-120668 | None:intergenic |
| GGGACATGTTTGTTATTATT+GGG | 0.318660 | tig0020520:-120812 | None:intergenic |
| TACTTTCCGCTTATTCATTC+GGG | 0.327530 | tig0020520:-115748 | None:intergenic |
| GTACTTTCCGCTTATTCATT+CGG | 0.332540 | tig0020520:-115749 | None:intergenic |
| AGCTTCCTCAAGAACTTTGC+CGG | 0.334411 | tig0020520:-120446 | None:intergenic |
| CTTTACGCGCAAACTTCTTT+CGG | 0.336036 | tig0020520:-120586 | None:intergenic |
| TATTTGTTGTGAATTGATTT+GGG | 0.360728 | tig0020520:-121051 | None:intergenic |
| TCATTCGGGAGGTCAATTTC+GGG | 0.376065 | tig0020520:-115734 | None:intergenic |
| CTGATGACCAAAATAATATC+TGG | 0.379939 | tig0020520:-120983 | None:intergenic |
| TCAAACTCAATTTCATCAAA+AGG | 0.380051 | tig0020520:-120554 | None:intergenic |
| GAATAGGTGAAGAAGGAAAA+TGG | 0.384580 | tig0020520:-115825 | None:intergenic |
| CGCCTCGGTTCTCGCCTTCA+AGG | 0.386977 | tig0020520:+115983 | Msa1382660:CDS |
| GTGGAAACCTTTGTTTGTTT+AGG | 0.399925 | tig0020520:-120683 | None:intergenic |
| GGATGAGGCATTTGTTGGTA+TGG | 0.402155 | tig0020520:+118185 | Msa1382660:CDS |
| TTTGATGAACATATTTGATA+AGG | 0.410702 | tig0020520:+117511 | Msa1382660:CDS |
| CTCAATTTCATCAAAAGGCT+TGG | 0.413672 | tig0020520:-120549 | None:intergenic |
| TACTGTAATTGATGGCTGAC+TGG | 0.414279 | tig0020520:-120496 | None:intergenic |
| TGGAAGTGGAACGAACATTC+AGG | 0.417411 | tig0020520:+117963 | Msa1382660:CDS |
| ATCCACATACACGATCCTTC+AGG | 0.420689 | tig0020520:-120891 | None:intergenic |
| GCAGGTTTGGGCAGGCAATC+CGG | 0.427230 | tig0020520:+120427 | Msa1382660:intron |
| CGCTGTATATTGCTCTTCCT+AGG | 0.432752 | tig0020520:-115922 | None:intergenic |
| CTATATTTGCAGGTTTGGGC+AGG | 0.438052 | tig0020520:+120419 | Msa1382660:intron |
| ATGAATAAGCGGAAAGTACT+AGG | 0.441855 | tig0020520:+115753 | Msa1382660:five_prime_UTR |
| ATATTGTGGAGCTATTGATC+TGG | 0.442749 | tig0020520:-120833 | None:intergenic |
| GGAAGTAGTAGTTTCCTTGA+AGG | 0.444566 | tig0020520:-115997 | None:intergenic |
| TTGGCAGAGGATCATCCATT+TGG | 0.451417 | tig0020520:+117597 | Msa1382660:CDS |
| TCACCGATGACGGAGGCACT+TGG | 0.455404 | tig0020520:-117566 | None:intergenic |
| TTTGTAGTTGCTATCTACTC+TGG | 0.459816 | tig0020520:+120855 | Msa1382660:three_prime_UTR |
| AATGCATCTTTATCAACAAC+GGG | 0.459975 | tig0020520:-117536 | None:intergenic |
| ACATTATCCCCAATAATAGT+AGG | 0.462118 | tig0020520:-118036 | None:intergenic |
| TCGAATTCTCCATCGAAAAT+GGG | 0.468600 | tig0020520:+115896 | Msa1382660:exon |
| CACCGATGACGGAGGCACTT+GGG | 0.479686 | tig0020520:-117565 | None:intergenic |
| GTTGAGGATGAGGCATTTGT+TGG | 0.479806 | tig0020520:+118180 | Msa1382660:CDS |
| GTTGCTATCTACTCTGGAAA+AGG | 0.484435 | tig0020520:+120861 | Msa1382660:three_prime_UTR |
| CATGACACATCCATACCAAA+TGG | 0.491582 | tig0020520:-117612 | None:intergenic |
| GCCCCAAGTGCCTCCGTCAT+CGG | 0.493477 | tig0020520:+117563 | Msa1382660:CDS |
| CGAGGAGTATGACTCAATGC+TGG | 0.495730 | tig0020520:+120610 | Msa1382660:CDS |
| CCCTTGTGAGACAGAATTCA+CGG | 0.497709 | tig0020520:+118265 | Msa1382660:CDS |
| CTTTATAATAAGATGAAAGG+TGG | 0.500506 | tig0020520:+121021 | Msa1382660:three_prime_UTR |
| GTTGCGAAGTCAAATTTAAG+TGG | 0.500521 | tig0020520:+118003 | Msa1382660:CDS |
| TTTGTTCAAATTCATGGAAG+AGG | 0.507441 | tig0020520:+120775 | Msa1382660:three_prime_UTR |
| CAGAATTCACGGATTCCATC+CGG | 0.507689 | tig0020520:+118276 | Msa1382660:CDS |
| TGCAAGGTTACTGTAATTGA+TGG | 0.508085 | tig0020520:-120504 | None:intergenic |
| TTATCTGGAAGAATGAGCTC+TGG | 0.510631 | tig0020520:-120653 | None:intergenic |
| TGGTATGGGTGCAACACTAC+TGG | 0.514205 | tig0020520:+118200 | Msa1382660:CDS |
| TCCACATACACGATCCTTCA+GGG | 0.517962 | tig0020520:-120890 | None:intergenic |
| ACCGATGACGGAGGCACTTG+GGG | 0.523236 | tig0020520:-117564 | None:intergenic |
| TTGTTCAAATTCATGGAAGA+GGG | 0.524350 | tig0020520:+120776 | Msa1382660:three_prime_UTR |
| GCGAGAACCGAGGCGATCAA+TGG | 0.526580 | tig0020520:-115975 | None:intergenic |
| CATGTGAAACTCACATGCAT+TGG | 0.537464 | tig0020520:-120931 | None:intergenic |
| GGTCACAGTGCGGTCTTACA+TGG | 0.537571 | tig0020520:+118150 | Msa1382660:intron |
| GCTGTATATTGCTCTTCCTA+GGG | 0.544124 | tig0020520:-115921 | None:intergenic |
| TTGCTTTATAATAAGATGAA+AGG | 0.546529 | tig0020520:+121018 | Msa1382660:three_prime_UTR |
| CAGCTGCATGGACCTGTGCA+AGG | 0.546560 | tig0020520:-120520 | None:intergenic |
| TCCCTGAAGGATCGTGTATG+TGG | 0.547029 | tig0020520:+120889 | Msa1382660:three_prime_UTR |
| TATTGTGGAGCTATTGATCT+GGG | 0.547920 | tig0020520:-120832 | None:intergenic |
| CCATCGAAAATGGGAACCCT+AGG | 0.548387 | tig0020520:+115905 | Msa1382660:exon |
| AAATGGTGGTGAGTGGAAGA+AGG | 0.549936 | tig0020520:-115808 | None:intergenic |
| AAACATGCCATGGTTGCTGC+TGG | 0.555478 | tig0020520:+118240 | Msa1382660:CDS |
| GATGAGGCATTTGTTGGTAT+GGG | 0.557130 | tig0020520:+118186 | Msa1382660:CDS |
| ATTGGGGATAATGTTACTGT+AGG | 0.557745 | tig0020520:+118045 | Msa1382660:CDS |
| GATAGCAACTACAAATATTG+TGG | 0.558085 | tig0020520:-120847 | None:intergenic |
| TTTATAATAAGATGAAAGGT+GGG | 0.558966 | tig0020520:+121022 | Msa1382660:three_prime_UTR |
| AAATGCATCTTTATCAACAA+CGG | 0.563384 | tig0020520:-117537 | None:intergenic |
| AGAGGATCATCCATTTGGTA+TGG | 0.566846 | tig0020520:+117602 | Msa1382660:CDS |
| TCTCTGTGGTGTGATGGAAT+AGG | 0.566944 | tig0020520:-115841 | None:intergenic |
| AGAATTTCTCTGTGGTGTGA+TGG | 0.568426 | tig0020520:-115847 | None:intergenic |
| AACAACATCAGTGTTGGAAG+TGG | 0.575912 | tig0020520:+117949 | Msa1382660:CDS |
| AAACCTTTGTTTGTTTAGGT+AGG | 0.577011 | tig0020520:-120679 | None:intergenic |
| CTTACATGGTTGCACTGTTG+AGG | 0.578504 | tig0020520:+118164 | Msa1382660:CDS |
| GGAAGAGCAATATACAGCGT+TGG | 0.581089 | tig0020520:+115926 | Msa1382660:CDS |
| ACTGTAATTGATGGCTGACT+GGG | 0.582150 | tig0020520:-120495 | None:intergenic |
| CACACACATACCTCTCCGGA+TGG | 0.584145 | tig0020520:-118291 | None:intergenic |
| GAACATTCAGGATAACTCCT+TGG | 0.585092 | tig0020520:+117975 | Msa1382660:CDS |
| TGGTTGCACTGTTGAGGATG+AGG | 0.587457 | tig0020520:+118170 | Msa1382660:CDS |
| AATGTGAACATCACCGATGA+CGG | 0.591114 | tig0020520:-117576 | None:intergenic |
| AAGGGCACCAGCAGCAACCA+TGG | 0.591319 | tig0020520:-118247 | None:intergenic |
| TCTGGAAGAATGAGCTCTGG+AGG | 0.591755 | tig0020520:-120650 | None:intergenic |
| TGTACACACACATACCTCTC+CGG | 0.592188 | tig0020520:-118295 | None:intergenic |
| TTGCGAAGTCAAATTTAAGT+GGG | 0.594604 | tig0020520:+118004 | Msa1382660:CDS |
| GCAATCCGGCAAAGTTCTTG+AGG | 0.596618 | tig0020520:+120441 | Msa1382660:CDS |
| GAAGTCAAATTTAAGTGGGA+AGG | 0.601013 | tig0020520:+118008 | Msa1382660:CDS |
| GGAAAAGGAAAGTTCCCTGA+AGG | 0.602605 | tig0020520:+120876 | Msa1382660:three_prime_UTR |
| TGTGATGGAATAGGTGAAGA+AGG | 0.604030 | tig0020520:-115832 | None:intergenic |
| GGTGATGTTCACATTGGCAG+AGG | 0.604788 | tig0020520:+117584 | Msa1382660:CDS |
| GAGGAGTATGACTCAATGCT+GGG | 0.608575 | tig0020520:+120611 | Msa1382660:CDS |
| TCTTTAAAGATCTCATTGTG+TGG | 0.610119 | tig0020520:-120702 | None:intergenic |
| GGACAAGCCATTGATCGCCT+CGG | 0.617682 | tig0020520:+115968 | Msa1382660:CDS |
| TTTCCGCTTATTCATTCGGG+AGG | 0.619619 | tig0020520:-115745 | None:intergenic |
| TCCGTGAATTCTGTCTCACA+AGG | 0.619899 | tig0020520:-118266 | None:intergenic |
| CAATTACAGTAACCTTGCAC+AGG | 0.620160 | tig0020520:+120508 | Msa1382660:CDS |
| AGAAGGAAAATGGTGGTGAG+TGG | 0.620505 | tig0020520:-115815 | None:intergenic |
| TGTCCTACCTAAACAAACAA+AGG | 0.621913 | tig0020520:+120676 | Msa1382660:CDS |
| TGACCTCCCGAATGAATAAG+CGG | 0.623321 | tig0020520:+115742 | Msa1382660:five_prime_UTR |
| CTGGAAGAATGAGCTCTGGA+GGG | 0.626080 | tig0020520:-120649 | None:intergenic |
| TGATGAAATTGAGTTTGAGA+AGG | 0.626270 | tig0020520:+120559 | Msa1382660:CDS |
| GATGTGAACAACATCAGTGT+TGG | 0.633059 | tig0020520:+117943 | Msa1382660:CDS |
| GAAGTTTGCGCGTAAAGACG+AGG | 0.633888 | tig0020520:+120592 | Msa1382660:CDS |
| GGTGTTGCCTACTATTATTG+GGG | 0.645236 | tig0020520:+118029 | Msa1382660:CDS |
| GTCATCGGTGATGTTCACAT+TGG | 0.648843 | tig0020520:+117578 | Msa1382660:CDS |
| TTCCTTGAAGGCGAGAACCG+AGG | 0.652401 | tig0020520:-115985 | None:intergenic |
| TGTTGTTGAGAAACATGCCA+TGG | 0.655725 | tig0020520:+118230 | Msa1382660:CDS |
| TTCACGGATTCCATCCGGAG+AGG | 0.692353 | tig0020520:+118281 | Msa1382660:CDS |
| ATGGGTGCAACACTACTGGA+TGG | 0.693665 | tig0020520:+118204 | Msa1382660:CDS |
| TGACTTCGCAACGTGCACCA+AGG | 0.699119 | tig0020520:-117992 | None:intergenic |
| GTGAACATCACCGATGACGG+AGG | 0.701387 | tig0020520:-117573 | None:intergenic |
| TGGTATGGATGTGTCATGAG+AGG | 0.706530 | tig0020520:+117617 | Msa1382660:CDS |
| CCGTGAATTCTGTCTCACAA+GGG | 0.725853 | tig0020520:-118265 | None:intergenic |
| GATTCAGAAGAATTTCTCTG+TGG | 0.740529 | tig0020520:-115855 | None:intergenic |
| GCACTGGGCAGGTCACAGTG+CGG | 0.741494 | tig0020520:+118140 | Msa1382660:intron |
| TAGGTGAAGAAGGAAAATGG+TGG | 0.746528 | tig0020520:-115822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTTTTTATTTTTTTTG+GGG | + | tig0020520:116461-116480 | Msa1382660:intron | 10.0% |
| !!! | TTATTTTTTTTGAATGTTTT+TGG | - | tig0020520:117782-117801 | None:intergenic | 10.0% |
| !! | AGATAAATTAAAGTAAATTT+GGG | - | tig0020520:118594-118613 | None:intergenic | 10.0% |
| !! | TAGATAAATTAAAGTAAATT+TGG | - | tig0020520:118595-118614 | None:intergenic | 10.0% |
| !! | TGATAATCATATTAAAATGT+TGG | + | tig0020520:116122-116141 | Msa1382660:intron | 15.0% |
| !! | ATTTAACATTATACAAAACA+GGG | - | tig0020520:116443-116462 | None:intergenic | 15.0% |
| !!! | TCATTTTTTATTTTTTTTGG+GGG | + | tig0020520:116462-116481 | Msa1382660:intron | 15.0% |
| !!! | TTCTTTTAAAAATAGTTTGT+AGG | + | tig0020520:116800-116819 | Msa1382660:intron | 15.0% |
| !!! | TTGATATGTTTTAATTTTCA+TGG | - | tig0020520:117449-117468 | None:intergenic | 15.0% |
| !! | AATATAATTTCAACAATACT+CGG | + | tig0020520:118618-118637 | Msa1382660:intron | 15.0% |
| !! | ATATTATACATCCAAAATAA+AGG | - | tig0020520:118722-118741 | None:intergenic | 15.0% |
| !!! | AAATCGATTTATTTGAATTT+TGG | + | tig0020520:118799-118818 | Msa1382660:intron | 15.0% |
| !!! | AAACTTTAAGAATTTTAGAA+GGG | - | tig0020520:119013-119032 | None:intergenic | 15.0% |
| !! | TTAAAGTTTCTAAGTATATT+TGG | + | tig0020520:119024-119043 | Msa1382660:intron | 15.0% |
| !! | AATCTAATTTAACCATAATA+TGG | - | tig0020520:119056-119075 | None:intergenic | 15.0% |
| !! | CATAAATAAAAACAGATTAG+AGG | - | tig0020520:116104-116123 | None:intergenic | 20.0% |
| !! | GGAAAATGATTGAAATAAAT+GGG | + | tig0020520:116308-116327 | Msa1382660:intron | 20.0% |
| !! | GATTTAACATTATACAAAAC+AGG | - | tig0020520:116444-116463 | None:intergenic | 20.0% |
| !!! | ATAAATCTTTTTGTCAAACA+TGG | - | tig0020520:116552-116571 | None:intergenic | 20.0% |
| !! | ATGTTTGACAAAAAGATTTA+TGG | + | tig0020520:116551-116570 | Msa1382660:intron | 20.0% |
| !!! | TAAAAATAGTTTGTAGGTTT+AGG | + | tig0020520:116806-116825 | Msa1382660:intron | 20.0% |
| !!! | ATCTTTCAAGTTGTTAATAT+TGG | - | tig0020520:116880-116899 | None:intergenic | 20.0% |
| !! | ATAACTCTATATCATTTAAC+TGG | + | tig0020520:117377-117396 | Msa1382660:intron | 20.0% |
| !! | TTTGATGAACATATTTGATA+AGG | + | tig0020520:117511-117530 | Msa1382660:CDS | 20.0% |
| !!! | ATATCACATTTTTCCTTTAA+CGG | + | tig0020520:118105-118124 | Msa1382660:intron | 20.0% |
| !! | AATTACAATTTCAAAGATCT+AGG | + | tig0020520:118361-118380 | Msa1382660:intron | 20.0% |
| !! | TGATTTATTTACATAGCTTT+AGG | + | tig0020520:118413-118432 | Msa1382660:intron | 20.0% |
| !! | CTAACTCATATTATATTGTA+TGG | - | tig0020520:118460-118479 | None:intergenic | 20.0% |
| !! | CATACAATATAATATGAGTT+AGG | + | tig0020520:118458-118477 | Msa1382660:intron | 20.0% |
| !!! | ATCTTTCCAGTATTATATTT+TGG | + | tig0020520:118500-118519 | Msa1382660:intron | 20.0% |
| !!! | ATACTTTTTTATGGAGTATT+TGG | - | tig0020520:118570-118589 | None:intergenic | 20.0% |
| !!! | AATTTGGGAATACTTTTTTA+TGG | - | tig0020520:118579-118598 | None:intergenic | 20.0% |
| !!! | GGTTTCTAAAAGTATTAATT+GGG | - | tig0020520:118701-118720 | None:intergenic | 20.0% |
| !!! | AGGTTTCTAAAAGTATTAAT+TGG | - | tig0020520:118702-118721 | None:intergenic | 20.0% |
| !!! | ACTTTTAGAAACCTTTATTT+TGG | + | tig0020520:118708-118727 | Msa1382660:intron | 20.0% |
| !! | TCTACAATAAAGATATAAAC+AGG | + | tig0020520:118887-118906 | Msa1382660:intron | 20.0% |
| !! | TATTGAGTATGAATCTTATA+AGG | - | tig0020520:118964-118983 | None:intergenic | 20.0% |
| !!! | GAAACTTTAAGAATTTTAGA+AGG | - | tig0020520:119014-119033 | None:intergenic | 20.0% |
| !! | ATTTGGAAATTACCATATTA+TGG | + | tig0020520:119041-119060 | Msa1382660:intron | 20.0% |
| !! | TTAGATTGAAAACCTTTAAA+TGG | + | tig0020520:119069-119088 | Msa1382660:intron | 20.0% |
| !! | ATCTAGAAATTATCATACTA+TGG | + | tig0020520:119498-119517 | Msa1382660:intron | 20.0% |
| !! | TTGCTTTATAATAAGATGAA+AGG | + | tig0020520:121018-121037 | Msa1382660:three_prime_UTR | 20.0% |
| !! | TTTATAATAAGATGAAAGGT+GGG | + | tig0020520:121022-121041 | Msa1382660:three_prime_UTR | 20.0% |
| !!! | TATTTGTTGTGAATTGATTT+GGG | - | tig0020520:121054-121073 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTGAATTGATT+TGG | - | tig0020520:121055-121074 | None:intergenic | 20.0% |
| !! | AGTACTTGTGTTTTATGTAT+TGG | + | tig0020520:116177-116196 | Msa1382660:intron | 25.0% |
| ! | GGGAAAATGATTGAAATAAA+TGG | + | tig0020520:116307-116326 | Msa1382660:intron | 25.0% |
| ! | GAAACAACATATTAAGATTC+TGG | + | tig0020520:116362-116381 | Msa1382660:intron | 25.0% |
| !! | TTTTTCTACCATAAAGAGAA+TGG | - | tig0020520:116501-116520 | None:intergenic | 25.0% |
| ! | TTGACAAAAAGATTTATGGT+TGG | + | tig0020520:116555-116574 | Msa1382660:intron | 25.0% |
| ! | GATACAATTGTGATATGAAA+TGG | + | tig0020520:116617-116636 | Msa1382660:intron | 25.0% |
| !! | GAATAGAGAAAATGATTTGT+TGG | + | tig0020520:116933-116952 | Msa1382660:intron | 25.0% |
| !! | ATTTGTTGGTATTGAAACTT+GGG | + | tig0020520:116947-116966 | Msa1382660:intron | 25.0% |
| ! | TTATTCTTGTGTAGAAAGTA+AGG | + | tig0020520:116995-117014 | Msa1382660:intron | 25.0% |
| ! | AGTTGAATGTTTGAATGAAA+GGG | + | tig0020520:117018-117037 | Msa1382660:intron | 25.0% |
| ! | TAGTCATGTATGAAATTGTT+TGG | + | tig0020520:117250-117269 | Msa1382660:intron | 25.0% |
| ! | CACTAAAAACAATAACAAAG+AGG | - | tig0020520:117477-117496 | None:intergenic | 25.0% |
| !!! | TGTTATTGTTTTTAGTGTCT+AGG | + | tig0020520:117480-117499 | Msa1382660:intron | 25.0% |
| ! | AAATGCATCTTTATCAACAA+CGG | - | tig0020520:117540-117559 | None:intergenic | 25.0% |
| ! | AAGTATTCCATGAATAAATC+TGG | - | tig0020520:117719-117738 | None:intergenic | 25.0% |
| !! | AAGACATTTTCTTTAACTAC+TGG | + | tig0020520:117743-117762 | Msa1382660:intron | 25.0% |
| !! | AGACATTTTCTTTAACTACT+GGG | + | tig0020520:117744-117763 | Msa1382660:intron | 25.0% |
| !!! | TTTGAATGTTTTTGGAATCA+GGG | - | tig0020520:117774-117793 | None:intergenic | 25.0% |
| !!! | TTTTGAATGTTTTTGGAATC+AGG | - | tig0020520:117775-117794 | None:intergenic | 25.0% |
| ! | CAGAGAAATAAACTTTGTAT+TGG | - | tig0020520:117813-117832 | None:intergenic | 25.0% |
| !!! | TAATATTTTGGCATTGATCA+TGG | + | tig0020520:118080-118099 | Msa1382660:intron | 25.0% |
| !! | TATCACATTTTTCCTTTAAC+GGG | + | tig0020520:118106-118125 | Msa1382660:intron | 25.0% |
| ! | AATTTCAAAGATCTAGGTAA+AGG | + | tig0020520:118367-118386 | Msa1382660:intron | 25.0% |
| ! | GTAAAGGAGTGAAATATAAT+TGG | + | tig0020520:118383-118402 | Msa1382660:intron | 25.0% |
| !!! | TAGCTTTAGGATAATTTTGT+TGG | + | tig0020520:118426-118445 | Msa1382660:intron | 25.0% |
| ! | AAGAAGCCAAAATATAATAC+TGG | - | tig0020520:118509-118528 | None:intergenic | 25.0% |
| !!! | TATTTGAATTTTGGCATACA+TGG | + | tig0020520:118808-118827 | Msa1382660:intron | 25.0% |
| ! | TATCACATGATACAAATCAA+TGG | + | tig0020520:118843-118862 | Msa1382660:intron | 25.0% |
| ! | ATACGTGATATACTTACTAT+GGG | - | tig0020520:118925-118944 | None:intergenic | 25.0% |
| ! | ATTTACAAGAGTCCATTTAA+AGG | - | tig0020520:119084-119103 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTAATATG+CGG | + | tig0020520:119134-119153 | Msa1382660:intron | 25.0% |
| ! | ATTAGTGTTCTTCATTGAAA+AGG | + | tig0020520:119163-119182 | Msa1382660:intron | 25.0% |
| !! | AAAAAACCGTCTTTGAAAAA+TGG | + | tig0020520:119195-119214 | Msa1382660:intron | 25.0% |
| ! | AATGGTATGTGAAACAAAAT+AGG | + | tig0020520:119213-119232 | Msa1382660:intron | 25.0% |
| !!! | TTATGTGACTTTGGTTTTAA+TGG | + | tig0020520:119306-119325 | Msa1382660:intron | 25.0% |
| ! | TTTATCTCCTATTGTATACT+TGG | - | tig0020520:119382-119401 | None:intergenic | 25.0% |
| ! | TTACATCGAAAACATATAAC+TGG | + | tig0020520:119525-119544 | Msa1382660:intron | 25.0% |
| !!! | TGCTCTAAATTTTACATCTA+TGG | - | tig0020520:119551-119570 | None:intergenic | 25.0% |
| ! | AAGATGTTATCCTTATTAAG+TGG | + | tig0020520:119602-119621 | Msa1382660:intron | 25.0% |
| ! | AGATGTTATCCTTATTAAGT+GGG | + | tig0020520:119603-119622 | Msa1382660:intron | 25.0% |
| ! | TTAATATAACCGAATGTTGA+TGG | + | tig0020520:119917-119936 | Msa1382660:intron | 25.0% |
| !! | AATCTCATCTTATTTCAGTT+CGG | - | tig0020520:120101-120120 | None:intergenic | 25.0% |
| ! | TCAAACTCAATTTCATCAAA+AGG | - | tig0020520:120557-120576 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTGTTCAAATTCA+TGG | + | tig0020520:120769-120788 | Msa1382660:three_prime_UTR | 25.0% |
| !! | TTACGTTCCAGATATTATTT+TGG | + | tig0020520:120976-120995 | Msa1382660:three_prime_UTR | 25.0% |
| ! | CTTTATAATAAGATGAAAGG+TGG | + | tig0020520:121021-121040 | Msa1382660:three_prime_UTR | 25.0% |
| ACATAGAGAAACGGTAATTA+CGG | - | tig0020520:116069-116088 | None:intergenic | 30.0% | |
| GATCTTAAGACATAGAGAAA+CGG | - | tig0020520:116078-116097 | None:intergenic | 30.0% | |
| ! | GAATTAGTAGAAGCATATAG+TGG | + | tig0020520:116330-116349 | Msa1382660:intron | 30.0% |
| TTGAGTTTCCATTCTCTTTA+TGG | + | tig0020520:116490-116509 | Msa1382660:intron | 30.0% | |
| ! | TGGCTTTTCTTCAAAAACAT+AGG | + | tig0020520:116637-116656 | Msa1382660:intron | 30.0% |
| GAAAAAGTCATGCTTTCATA+TGG | + | tig0020520:116900-116919 | Msa1382660:intron | 30.0% | |
| !! | GATTTGTTGGTATTGAAACT+TGG | + | tig0020520:116946-116965 | Msa1382660:intron | 30.0% |
| GAGTTGAATGTTTGAATGAA+AGG | + | tig0020520:117017-117036 | Msa1382660:intron | 30.0% | |
| !!! | TCTTCAATCTTTTTTCTCAC+AGG | + | tig0020520:117108-117127 | Msa1382660:intron | 30.0% |
| AAAAACATCCTCAACAAAGA+AGG | - | tig0020520:117171-117190 | None:intergenic | 30.0% | |
| !! | TTTGTTGAGGATGTTTTTGT+TGG | + | tig0020520:117173-117192 | Msa1382660:intron | 30.0% |
| !! | TTGTTGAGGATGTTTTTGTT+GGG | + | tig0020520:117174-117193 | Msa1382660:intron | 30.0% |
| ! | TGATGCATTTGGAATTGAAA+TGG | + | tig0020520:117219-117238 | Msa1382660:intron | 30.0% |
| ACTCTATATCATTTAACTGG+TGG | + | tig0020520:117380-117399 | Msa1382660:intron | 30.0% | |
| TCATTTAACTGGTGGAAAAA+TGG | + | tig0020520:117388-117407 | Msa1382660:intron | 30.0% | |
| TGGTGGAAAAATGGTTTAAT+GGG | + | tig0020520:117397-117416 | Msa1382660:intron | 30.0% | |
| AATGCATCTTTATCAACAAC+GGG | - | tig0020520:117539-117558 | None:intergenic | 30.0% | |
| CCAAAAGTTTAATGCCTAAT+TGG | - | tig0020520:117660-117679 | None:intergenic | 30.0% | |
| ! | CCAATTAGGCATTAAACTTT+TGG | + | tig0020520:117657-117676 | Msa1382660:intron | 30.0% |
| ! | TTAGGCATTAAACTTTTGGT+TGG | + | tig0020520:117661-117680 | Msa1382660:intron | 30.0% |
| !!! | CTTTTGGTTGGTTTATCATT+TGG | + | tig0020520:117673-117692 | Msa1382660:intron | 30.0% |
| TGAGTAACCAGATTTATTCA+TGG | + | tig0020520:117709-117728 | Msa1382660:intron | 30.0% | |
| ! | GACATTTTCTTTAACTACTG+GGG | + | tig0020520:117745-117764 | Msa1382660:intron | 30.0% |
| TCAAACTTCACTTTATGCTT+AGG | + | tig0020520:117919-117938 | Msa1382660:intron | 30.0% | |
| TTGCGAAGTCAAATTTAAGT+GGG | + | tig0020520:118004-118023 | Msa1382660:CDS | 30.0% | |
| ACATTATCCCCAATAATAGT+AGG | - | tig0020520:118039-118058 | None:intergenic | 30.0% | |
| ! | TGAGTCTGTGAGTAATATTT+TGG | + | tig0020520:118068-118087 | Msa1382660:intron | 30.0% |
| !! | CAAATTTTAACACCCGTTAA+AGG | - | tig0020520:118121-118140 | None:intergenic | 30.0% |
| TATATGCGATTATGTGTGTT+CGG | + | tig0020520:118326-118345 | Msa1382660:intron | 30.0% | |
| CATACGTGATATACTTACTA+TGG | - | tig0020520:118926-118945 | None:intergenic | 30.0% | |
| AGATGTTATCCTTAATATGC+GGG | + | tig0020520:119135-119154 | Msa1382660:intron | 30.0% | |
| TAATTTATGCCCGCATATTA+AGG | - | tig0020520:119147-119166 | None:intergenic | 30.0% | |
| !! | CACATACCATTTTTCAAAGA+CGG | - | tig0020520:119204-119223 | None:intergenic | 30.0% |
| !!! | AGTTTTAACTGTAGAGAAGA+TGG | + | tig0020520:119271-119290 | Msa1382660:intron | 30.0% |
| AATGTCATCTTATGTGACTT+TGG | + | tig0020520:119297-119316 | Msa1382660:intron | 30.0% | |
| TTATCCTTATTAAGTGGGAA+TGG | + | tig0020520:119608-119627 | Msa1382660:intron | 30.0% | |
| AAAACCATTCCCACTTAATA+AGG | - | tig0020520:119615-119634 | None:intergenic | 30.0% | |
| ! | GCATACAATTTTGCAAAGAT+GGG | - | tig0020520:119669-119688 | None:intergenic | 30.0% |
| ACCAATTCGATAAAAATCTG+AGG | + | tig0020520:119719-119738 | Msa1382660:intron | 30.0% | |
| ! | ACCTCAGATTTTTATCGAAT+TGG | - | tig0020520:119723-119742 | None:intergenic | 30.0% |
| CGTTATCACTGTAGAAAATA+TGG | + | tig0020520:119743-119762 | Msa1382660:intron | 30.0% | |
| TGGTTGAATCTTATTCGATT+TGG | + | tig0020520:119763-119782 | Msa1382660:intron | 30.0% | |
| CTTCTTCCTATTGTATACTT+GGG | - | tig0020520:119847-119866 | None:intergenic | 30.0% | |
| ACTTCTTCCTATTGTATACT+TGG | - | tig0020520:119848-119867 | None:intergenic | 30.0% | |
| AGTGGGAACAATAAAGAATA+GGG | + | tig0020520:119877-119896 | Msa1382660:intron | 30.0% | |
| ATAAAGGAGTCCATTATGTT+TGG | + | tig0020520:119999-120018 | Msa1382660:intron | 30.0% | |
| TAAAGGAGTCCATTATGTTT+GGG | + | tig0020520:120000-120019 | Msa1382660:intron | 30.0% | |
| ! | TAAGCTTTTCCCAAACATAA+TGG | - | tig0020520:120012-120031 | None:intergenic | 30.0% |
| ATTATGTTTGGGAAAAGCTT+AGG | + | tig0020520:120011-120030 | Msa1382660:intron | 30.0% | |
| TATTTCAGTTCGGATAATTG+AGG | - | tig0020520:120091-120110 | None:intergenic | 30.0% | |
| TAGCTATAGGACTATTTGTT+AGG | - | tig0020520:120136-120155 | None:intergenic | 30.0% | |
| ACAAATAGTCCTATAGCTAA+AGG | + | tig0020520:120137-120156 | Msa1382660:intron | 30.0% | |
| GAGTACATGATATGAAGTTA+TGG | + | tig0020520:120196-120215 | Msa1382660:intron | 30.0% | |
| ! | TGCAAATATAGGCAATTTTG+TGG | - | tig0020520:120410-120429 | None:intergenic | 30.0% |
| ACAAAATTGCCTATATTTGC+AGG | + | tig0020520:120409-120428 | Msa1382660:intron | 30.0% | |
| TGATGAAATTGAGTTTGAGA+AGG | + | tig0020520:120559-120578 | Msa1382660:CDS | 30.0% | |
| ! | AAACCTTTGTTTGTTTAGGT+AGG | - | tig0020520:120682-120701 | None:intergenic | 30.0% |
| ! | TCTTTAAAGATCTCATTGTG+TGG | - | tig0020520:120705-120724 | None:intergenic | 30.0% |
| TTTGTTCAAATTCATGGAAG+AGG | + | tig0020520:120775-120794 | Msa1382660:three_prime_UTR | 30.0% | |
| TTGTTCAAATTCATGGAAGA+GGG | + | tig0020520:120776-120795 | Msa1382660:three_prime_UTR | 30.0% | |
| !! | GGGACATGTTTGTTATTATT+GGG | - | tig0020520:120815-120834 | None:intergenic | 30.0% |
| !! | TGGGACATGTTTGTTATTAT+TGG | - | tig0020520:120816-120835 | None:intergenic | 30.0% |
| GATAGCAACTACAAATATTG+TGG | - | tig0020520:120850-120869 | None:intergenic | 30.0% | |
| CTGATGACCAAAATAATATC+TGG | - | tig0020520:120986-121005 | None:intergenic | 30.0% | |
| TACTTTCCGCTTATTCATTC+GGG | - | tig0020520:115751-115770 | None:intergenic | 35.0% | |
| GTACTTTCCGCTTATTCATT+CGG | - | tig0020520:115752-115771 | None:intergenic | 35.0% | |
| !! | ATGAATAAGCGGAAAGTACT+AGG | + | tig0020520:115753-115772 | Msa1382660:five_prime_UTR | 35.0% |
| GAATAGGTGAAGAAGGAAAA+TGG | - | tig0020520:115828-115847 | None:intergenic | 35.0% | |
| GATTCAGAAGAATTTCTCTG+TGG | - | tig0020520:115858-115877 | None:intergenic | 35.0% | |
| TTCGATGGAGAATTCGAATT+TGG | - | tig0020520:115893-115912 | None:intergenic | 35.0% | |
| TTCGAATTCTCCATCGAAAA+TGG | + | tig0020520:115895-115914 | Msa1382660:exon | 35.0% | |
| TCGAATTCTCCATCGAAAAT+GGG | + | tig0020520:115896-115915 | Msa1382660:exon | 35.0% | |
| !! | CAATATACAGCGTTGGATTT+TGG | + | tig0020520:115933-115952 | Msa1382660:CDS | 35.0% |
| AGTTTATGATTGCAGTGTAG+TGG | + | tig0020520:116286-116305 | Msa1382660:intron | 35.0% | |
| GTTTATGATTGCAGTGTAGT+GGG | + | tig0020520:116287-116306 | Msa1382660:intron | 35.0% | |
| GGAGAATTTATGTAAGATCG+TGG | + | tig0020520:116383-116402 | Msa1382660:intron | 35.0% | |
| TGGTATAGTTGAAACTCCTA+GGG | + | tig0020520:116403-116422 | Msa1382660:intron | 35.0% | |
| ! | AAAAACTGTGTTGTTGAGCT+TGG | + | tig0020520:116516-116535 | Msa1382660:intron | 35.0% |
| AAAGATTTATGGTTGGAGAG+TGG | + | tig0020520:116562-116581 | Msa1382660:intron | 35.0% | |
| TTTGTAGGTTTAGGTCTGAT+TGG | + | tig0020520:116815-116834 | Msa1382660:intron | 35.0% | |
| TCATACAGTTGAAACACTTG+AGG | - | tig0020520:117075-117094 | None:intergenic | 35.0% | |
| AAGTAGTTCCTTCTTTGTTG+AGG | + | tig0020520:117160-117179 | Msa1382660:intron | 35.0% | |
| !! | GTAGTGTTGATTGATGCATT+TGG | + | tig0020520:117208-117227 | Msa1382660:intron | 35.0% |
| TGTTTGGTCATTATCTTGCT+AGG | + | tig0020520:117266-117285 | Msa1382660:intron | 35.0% | |
| CTGGTGGAAAAATGGTTTAA+TGG | + | tig0020520:117396-117415 | Msa1382660:intron | 35.0% | |
| GCTCTTTCACTTTACCAATT+AGG | + | tig0020520:117643-117662 | Msa1382660:intron | 35.0% | |
| GTTGCGAAGTCAAATTTAAG+TGG | + | tig0020520:118003-118022 | Msa1382660:CDS | 35.0% | |
| GAAGTCAAATTTAAGTGGGA+AGG | + | tig0020520:118008-118027 | Msa1382660:CDS | 35.0% | |
| !! | AAGGTGTTGCCTACTATTAT+TGG | + | tig0020520:118027-118046 | Msa1382660:CDS | 35.0% |
| ! | AGGTGTTGCCTACTATTATT+GGG | + | tig0020520:118028-118047 | Msa1382660:CDS | 35.0% |
| ATTGGGGATAATGTTACTGT+AGG | + | tig0020520:118045-118064 | Msa1382660:CDS | 35.0% | |
| ! | CTTGTAAATTTAGAGCTTCG+TGG | + | tig0020520:119095-119114 | Msa1382660:intron | 35.0% |
| ! | TAAATTTAGAGCTTCGTGGA+CGG | + | tig0020520:119099-119118 | Msa1382660:intron | 35.0% |
| AAACATTCGAGAGAGAATTG+AGG | + | tig0020520:119247-119266 | Msa1382660:intron | 35.0% | |
| CACTAGTACAAGATAGTGTT+GGG | + | tig0020520:119345-119364 | Msa1382660:intron | 35.0% | |
| ! | CGCATACAATTTTGCAAAGA+TGG | - | tig0020520:119670-119689 | None:intergenic | 35.0% |
| AATTGTATGCGAGACAAAAC+AGG | + | tig0020520:119679-119698 | Msa1382660:intron | 35.0% | |
| ! | TCTAACATTTTCCTCCTTAC+GGG | - | tig0020520:119814-119833 | None:intergenic | 35.0% |
| ! | GTCTAACATTTTCCTCCTTA+CGG | - | tig0020520:119815-119834 | None:intergenic | 35.0% |
| CTATTGTATACTTGGGTAAC+TGG | - | tig0020520:119840-119859 | None:intergenic | 35.0% | |
| CAGTTACCCAAGTATACAAT+AGG | + | tig0020520:119838-119857 | Msa1382660:intron | 35.0% | |
| GAGTGGGAACAATAAAGAAT+AGG | + | tig0020520:119876-119895 | Msa1382660:intron | 35.0% | |
| TTAACAGAACATGTGAGAAC+TGG | + | tig0020520:119972-119991 | Msa1382660:intron | 35.0% | |
| TAACAGAACATGTGAGAACT+GGG | + | tig0020520:119973-119992 | Msa1382660:intron | 35.0% | |
| TATTCTTTAATTCCTCGCAC+TGG | + | tig0020520:120058-120077 | Msa1382660:intron | 35.0% | |
| !! | GGTATGTGATTGTTGTTTGT+GGG | + | tig0020520:120262-120281 | Msa1382660:intron | 35.0% |
| ATTGCCTATATTTGCAGGTT+TGG | + | tig0020520:120414-120433 | Msa1382660:intron | 35.0% | |
| TTGCCTATATTTGCAGGTTT+GGG | + | tig0020520:120415-120434 | Msa1382660:intron | 35.0% | |
| TGCAAGGTTACTGTAATTGA+TGG | - | tig0020520:120507-120526 | None:intergenic | 35.0% | |
| CTCAATTTCATCAAAAGGCT+TGG | - | tig0020520:120552-120571 | None:intergenic | 35.0% | |
| TGTTTAGGTAGGACATTATC+TGG | - | tig0020520:120671-120690 | None:intergenic | 35.0% | |
| TGTCCTACCTAAACAAACAA+AGG | + | tig0020520:120676-120695 | Msa1382660:CDS | 35.0% | |
| ! | GTGGAAACCTTTGTTTGTTT+AGG | - | tig0020520:120686-120705 | None:intergenic | 35.0% |
| TATTGTGGAGCTATTGATCT+GGG | - | tig0020520:120835-120854 | None:intergenic | 35.0% | |
| ATATTGTGGAGCTATTGATC+TGG | - | tig0020520:120836-120855 | None:intergenic | 35.0% | |
| TTTGTAGTTGCTATCTACTC+TGG | + | tig0020520:120855-120874 | Msa1382660:three_prime_UTR | 35.0% | |
| TAGGTGAAGAAGGAAAATGG+TGG | - | tig0020520:115825-115844 | None:intergenic | 40.0% | |
| ! | TGTGATGGAATAGGTGAAGA+AGG | - | tig0020520:115835-115854 | None:intergenic | 40.0% |
| AGAATTTCTCTGTGGTGTGA+TGG | - | tig0020520:115850-115869 | None:intergenic | 40.0% | |
| GCTGTATATTGCTCTTCCTA+GGG | - | tig0020520:115924-115943 | None:intergenic | 40.0% | |
| ! | GGATTTTGGATTCGAGAAAC+TGG | + | tig0020520:115947-115966 | Msa1382660:CDS | 40.0% |
| GGAAGTAGTAGTTTCCTTGA+AGG | - | tig0020520:116000-116019 | None:intergenic | 40.0% | |
| AAAGTGACTAACGCTGTTCT+TGG | - | tig0020520:116021-116040 | None:intergenic | 40.0% | |
| TTGGAAGCTCAGCGAAATAA+TGG | + | tig0020520:116196-116215 | Msa1382660:intron | 40.0% | |
| TGGAAGCTCAGCGAAATAAT+GGG | + | tig0020520:116197-116216 | Msa1382660:intron | 40.0% | |
| GTGGTATAGTTGAAACTCCT+AGG | + | tig0020520:116402-116421 | Msa1382660:intron | 40.0% | |
| ! | TGTGTTGTTGAGCTTGGTAT+TGG | + | tig0020520:116522-116541 | Msa1382660:intron | 40.0% |
| CATGCTTTCATATGGACTTC+AGG | + | tig0020520:116908-116927 | Msa1382660:intron | 40.0% | |
| AATGTGAACATCACCGATGA+CGG | - | tig0020520:117579-117598 | None:intergenic | 40.0% | |
| AGAGGATCATCCATTTGGTA+TGG | + | tig0020520:117602-117621 | Msa1382660:CDS | 40.0% | |
| CATGACACATCCATACCAAA+TGG | - | tig0020520:117615-117634 | None:intergenic | 40.0% | |
| GATGTGAACAACATCAGTGT+TGG | + | tig0020520:117943-117962 | Msa1382660:CDS | 40.0% | |
| ! | AACAACATCAGTGTTGGAAG+TGG | + | tig0020520:117949-117968 | Msa1382660:CDS | 40.0% |
| GAACATTCAGGATAACTCCT+TGG | + | tig0020520:117975-117994 | Msa1382660:CDS | 40.0% | |
| ! | GGTGTTGCCTACTATTATTG+GGG | + | tig0020520:118029-118048 | Msa1382660:CDS | 40.0% |
| ACGGGTGTTAAAATTTGCAC+TGG | + | tig0020520:118124-118143 | Msa1382660:intron | 40.0% | |
| CGGGTGTTAAAATTTGCACT+GGG | + | tig0020520:118125-118144 | Msa1382660:intron | 40.0% | |
| TGTTAAAATTTGCACTGGGC+AGG | + | tig0020520:118129-118148 | Msa1382660:intron | 40.0% | |
| ! | GATGAGGCATTTGTTGGTAT+GGG | + | tig0020520:118186-118205 | Msa1382660:CDS | 40.0% |
| TGTTGTTGAGAAACATGCCA+TGG | + | tig0020520:118230-118249 | Msa1382660:CDS | 40.0% | |
| GTATGTGTGTGTACATGTTC+AGG | + | tig0020520:118303-118322 | Msa1382660:intron | 40.0% | |
| GCACTAGTACAAGATAGTGT+TGG | + | tig0020520:119344-119363 | Msa1382660:intron | 40.0% | |
| TTGTATACTTGGCCAACTGA+TGG | - | tig0020520:119371-119390 | None:intergenic | 40.0% | |
| CAGTTGGCCAAGTATACAAT+AGG | + | tig0020520:119372-119391 | Msa1382660:intron | 40.0% | |
| ! | AAAAGAGCACAAGCAATGAG+AGG | + | tig0020520:119399-119418 | Msa1382660:intron | 40.0% |
| ! | AAAGAGCACAAGCAATGAGA+GGG | + | tig0020520:119400-119419 | Msa1382660:intron | 40.0% |
| ! | TTTAGAGCAGTTTGCAAGAC+TGG | + | tig0020520:119562-119581 | Msa1382660:intron | 40.0% |
| TTGTATACTTGGGTAACTGG+TGG | - | tig0020520:119837-119856 | None:intergenic | 40.0% | |
| GAAGAAGTCAACTAGAGAGT+GGG | + | tig0020520:119860-119879 | Msa1382660:intron | 40.0% | |
| !! | TAACCGAATGTTGATGGTTG+AGG | + | tig0020520:119923-119942 | Msa1382660:intron | 40.0% |
| !! | AACCGAATGTTGATGGTTGA+GGG | + | tig0020520:119924-119943 | Msa1382660:intron | 40.0% |
| TGTGAGAACTGGGAAGATAA+AGG | + | tig0020520:119983-120002 | Msa1382660:intron | 40.0% | |
| TTTGGGAAAAGCTTAGGAAG+AGG | + | tig0020520:120017-120036 | Msa1382660:intron | 40.0% | |
| !! | GGGTATGTGATTGTTGTTTG+TGG | + | tig0020520:120261-120280 | Msa1382660:intron | 40.0% |
| CAACAAAAGTAGACCATTCG+TGG | + | tig0020520:120294-120313 | Msa1382660:intron | 40.0% | |
| CTATCACAATACACCACGAA+TGG | - | tig0020520:120310-120329 | None:intergenic | 40.0% | |
| ! | ACTGTAATTGATGGCTGACT+GGG | - | tig0020520:120498-120517 | None:intergenic | 40.0% |
| ! | TACTGTAATTGATGGCTGAC+TGG | - | tig0020520:120499-120518 | None:intergenic | 40.0% |
| CAATTACAGTAACCTTGCAC+AGG | + | tig0020520:120508-120527 | Msa1382660:CDS | 40.0% | |
| CTTTACGCGCAAACTTCTTT+CGG | - | tig0020520:120589-120608 | None:intergenic | 40.0% | |
| TTATCTGGAAGAATGAGCTC+TGG | - | tig0020520:120656-120675 | None:intergenic | 40.0% | |
| ! | GTTGCTATCTACTCTGGAAA+AGG | + | tig0020520:120861-120880 | Msa1382660:three_prime_UTR | 40.0% |
| CATGTGAAACTCACATGCAT+TGG | - | tig0020520:120934-120953 | None:intergenic | 40.0% | |
| TGACCTCCCGAATGAATAAG+CGG | + | tig0020520:115742-115761 | Msa1382660:five_prime_UTR | 45.0% | |
| TTTCCGCTTATTCATTCGGG+AGG | - | tig0020520:115748-115767 | None:intergenic | 45.0% | |
| ! | AAATGGTGGTGAGTGGAAGA+AGG | - | tig0020520:115811-115830 | None:intergenic | 45.0% |
| ! | AGAAGGAAAATGGTGGTGAG+TGG | - | tig0020520:115818-115837 | None:intergenic | 45.0% |
| ! | TCTCTGTGGTGTGATGGAAT+AGG | - | tig0020520:115844-115863 | None:intergenic | 45.0% |
| CGCTGTATATTGCTCTTCCT+AGG | - | tig0020520:115925-115944 | None:intergenic | 45.0% | |
| GGAAGAGCAATATACAGCGT+TGG | + | tig0020520:115926-115945 | Msa1382660:CDS | 45.0% | |
| CTCCTAGGGAAAATTACTGC+AGG | + | tig0020520:116417-116436 | Msa1382660:intron | 45.0% | |
| GTCATCGGTGATGTTCACAT+TGG | + | tig0020520:117578-117597 | Msa1382660:CDS | 45.0% | |
| TTGGCAGAGGATCATCCATT+TGG | + | tig0020520:117597-117616 | Msa1382660:CDS | 45.0% | |
| TGGTATGGATGTGTCATGAG+AGG | + | tig0020520:117617-117636 | Msa1382660:CDS | 45.0% | |
| TGGAAGTGGAACGAACATTC+AGG | + | tig0020520:117963-117982 | Msa1382660:CDS | 45.0% | |
| CTTACATGGTTGCACTGTTG+AGG | + | tig0020520:118164-118183 | Msa1382660:CDS | 45.0% | |
| ! | GTTGAGGATGAGGCATTTGT+TGG | + | tig0020520:118180-118199 | Msa1382660:CDS | 45.0% |
| ! | GGATGAGGCATTTGTTGGTA+TGG | + | tig0020520:118185-118204 | Msa1382660:CDS | 45.0% |
| CCGTGAATTCTGTCTCACAA+GGG | - | tig0020520:118268-118287 | None:intergenic | 45.0% | |
| CCCTTGTGAGACAGAATTCA+CGG | + | tig0020520:118265-118284 | Msa1382660:CDS | 45.0% | |
| TCCGTGAATTCTGTCTCACA+AGG | - | tig0020520:118269-118288 | None:intergenic | 45.0% | |
| CAGAATTCACGGATTCCATC+CGG | + | tig0020520:118276-118295 | Msa1382660:CDS | 45.0% | |
| TGTACACACACATACCTCTC+CGG | - | tig0020520:118298-118317 | None:intergenic | 45.0% | |
| TGCGATTATGTGTGTTCGGT+TGG | + | tig0020520:118330-118349 | Msa1382660:intron | 45.0% | |
| GCGATTATGTGTGTTCGGTT+GGG | + | tig0020520:118331-118350 | Msa1382660:intron | 45.0% | |
| ! | AGTGTCGAGCAAGAATACAG+TGG | + | tig0020520:119434-119453 | Msa1382660:intron | 45.0% |
| GTGTCGAGCAAGAATACAGT+GGG | + | tig0020520:119435-119454 | Msa1382660:intron | 45.0% | |
| GGAAGAAGTCAACTAGAGAG+TGG | + | tig0020520:119859-119878 | Msa1382660:intron | 45.0% | |
| CTCCCTCAACCATCAACATT+CGG | - | tig0020520:119929-119948 | None:intergenic | 45.0% | |
| ATGGTTGAGGGAGTAACGAT+GGG | + | tig0020520:119936-119955 | Msa1382660:intron | 45.0% | |
| GGAAAAGCTTAGGAAGAGGT+GGG | + | tig0020520:120021-120040 | Msa1382660:intron | 45.0% | |
| AGTCCTATAGCTAAAGGCAG+AGG | + | tig0020520:120143-120162 | Msa1382660:intron | 45.0% | |
| GTCCTATAGCTAAAGGCAGA+GGG | + | tig0020520:120144-120163 | Msa1382660:intron | 45.0% | |
| !! | TGGTGTTGATCGATCCATGT+TGG | + | tig0020520:120216-120235 | Msa1382660:intron | 45.0% |
| ! | ACTGCCTCTGGTGATGAAAA+GGG | + | tig0020520:120241-120260 | Msa1382660:intron | 45.0% |
| ! | CATACCCTTTTCATCACCAG+AGG | - | tig0020520:120248-120267 | None:intergenic | 45.0% |
| CTGCCCAAACCTGCAAATAT+AGG | - | tig0020520:120421-120440 | None:intergenic | 45.0% | |
| CTATATTTGCAGGTTTGGGC+AGG | + | tig0020520:120419-120438 | Msa1382660:intron | 45.0% | |
| AGCTTCCTCAAGAACTTTGC+CGG | - | tig0020520:120449-120468 | None:intergenic | 45.0% | |
| ! | GAGGAGTATGACTCAATGCT+GGG | + | tig0020520:120611-120630 | Msa1382660:CDS | 45.0% |
| GGAAAAGGAAAGTTCCCTGA+AGG | + | tig0020520:120876-120895 | Msa1382660:three_prime_UTR | 45.0% | |
| TCCACATACACGATCCTTCA+GGG | - | tig0020520:120893-120912 | None:intergenic | 45.0% | |
| ATCCACATACACGATCCTTC+AGG | - | tig0020520:120894-120913 | None:intergenic | 45.0% | |
| !!! | AAATCATTTTTTATTTTTTT+TGG | + | tig0020520:116459-116478 | Msa1382660:intron | 5.0% |
| !!! | AATCATTTTTTATTTTTTTT+GGG | + | tig0020520:116460-116479 | Msa1382660:intron | 5.0% |
| ! | CCTAGGGTTCCCATTTTCGA+TGG | - | tig0020520:115908-115927 | None:intergenic | 50.0% |
| CCATCGAAAATGGGAACCCT+AGG | + | tig0020520:115905-115924 | Msa1382660:exon | 50.0% | |
| ! | GGCCTGCAGTAATTTTCCCT+AGG | - | tig0020520:116422-116441 | None:intergenic | 50.0% |
| GGTGATGTTCACATTGGCAG+AGG | + | tig0020520:117584-117603 | Msa1382660:CDS | 50.0% | |
| TGGTTGCACTGTTGAGGATG+AGG | + | tig0020520:118170-118189 | Msa1382660:CDS | 50.0% | |
| TGGTATGGGTGCAACACTAC+TGG | + | tig0020520:118200-118219 | Msa1382660:CDS | 50.0% | |
| ATGGGTGCAACACTACTGGA+TGG | + | tig0020520:118204-118223 | Msa1382660:CDS | 50.0% | |
| AAACATGCCATGGTTGCTGC+TGG | + | tig0020520:118240-118259 | Msa1382660:CDS | 50.0% | |
| ! | GATAGTGTTGGGCCATCAGT+TGG | + | tig0020520:119356-119375 | Msa1382660:intron | 50.0% |
| ACAAGCAATGAGAGGGAGAG+TGG | + | tig0020520:119407-119426 | Msa1382660:intron | 50.0% | |
| CAAGCAATGAGAGGGAGAGT+GGG | + | tig0020520:119408-119427 | Msa1382660:intron | 50.0% | |
| GATGGTTGAGGGAGTAACGA+TGG | + | tig0020520:119935-119954 | Msa1382660:intron | 50.0% | |
| TGGTTGAGGGAGTAACGATG+GGG | + | tig0020520:119937-119956 | Msa1382660:intron | 50.0% | |
| GGGAAAAGCTTAGGAAGAGG+TGG | + | tig0020520:120020-120039 | Msa1382660:intron | 50.0% | |
| TGAGGAATTTGACCAGTGCG+AGG | - | tig0020520:120073-120092 | None:intergenic | 50.0% | |
| CTCCCTCTGCCTTTAGCTAT+AGG | - | tig0020520:120149-120168 | None:intergenic | 50.0% | |
| ! | GACTGCCTCTGGTGATGAAA+AGG | + | tig0020520:120240-120259 | Msa1382660:intron | 50.0% |
| GCAATCCGGCAAAGTTCTTG+AGG | + | tig0020520:120441-120460 | Msa1382660:CDS | 50.0% | |
| ! | GCTTGGCATTTTCAGCTGCA+TGG | - | tig0020520:120535-120554 | None:intergenic | 50.0% |
| GAAGTTTGCGCGTAAAGACG+AGG | + | tig0020520:120592-120611 | Msa1382660:CDS | 50.0% | |
| ! | CGAGGAGTATGACTCAATGC+TGG | + | tig0020520:120610-120629 | Msa1382660:CDS | 50.0% |
| !! | CTGGAAGAATGAGCTCTGGA+GGG | - | tig0020520:120652-120671 | None:intergenic | 50.0% |
| ! | TCTGGAAGAATGAGCTCTGG+AGG | - | tig0020520:120653-120672 | None:intergenic | 50.0% |
| TCCCTGAAGGATCGTGTATG+TGG | + | tig0020520:120889-120908 | Msa1382660:three_prime_UTR | 50.0% | |
| GGACAAGCCATTGATCGCCT+CGG | + | tig0020520:115968-115987 | Msa1382660:CDS | 55.0% | |
| TTCCTTGAAGGCGAGAACCG+AGG | - | tig0020520:115988-116007 | None:intergenic | 55.0% | |
| ! | GTGAACATCACCGATGACGG+AGG | - | tig0020520:117576-117595 | None:intergenic | 55.0% |
| TGACTTCGCAACGTGCACCA+AGG | - | tig0020520:117995-118014 | None:intergenic | 55.0% | |
| GGTCACAGTGCGGTCTTACA+TGG | + | tig0020520:118150-118169 | Msa1382660:intron | 55.0% | |
| TTCACGGATTCCATCCGGAG+AGG | + | tig0020520:118281-118300 | Msa1382660:CDS | 55.0% | |
| CACACACATACCTCTCCGGA+TGG | - | tig0020520:118294-118313 | None:intergenic | 55.0% | |
| !! | AGCTTCGTGGACGGATTGCA+AGG | + | tig0020520:119108-119127 | Msa1382660:intron | 55.0% |
| ! | GATGTCTTGAAGCGCCCGTA+AGG | + | tig0020520:119797-119816 | Msa1382660:intron | 55.0% |
| !! | TCCATGTTGGTGACTGCCTC+TGG | + | tig0020520:120229-120248 | Msa1382660:intron | 55.0% |
| ACCAGAGGCAGTCACCAACA+TGG | - | tig0020520:120233-120252 | None:intergenic | 55.0% | |
| GCGAGAACCGAGGCGATCAA+TGG | - | tig0020520:115978-115997 | None:intergenic | 60.0% | |
| !! | ACCGATGACGGAGGCACTTG+GGG | - | tig0020520:117567-117586 | None:intergenic | 60.0% |
| !! | CACCGATGACGGAGGCACTT+GGG | - | tig0020520:117568-117587 | None:intergenic | 60.0% |
| !! | TCACCGATGACGGAGGCACT+TGG | - | tig0020520:117569-117588 | None:intergenic | 60.0% |
| !! | AAGGGCACCAGCAGCAACCA+TGG | - | tig0020520:118250-118269 | None:intergenic | 60.0% |
| ! | GTCTTGAAGCGCCCGTAAGG+AGG | + | tig0020520:119800-119819 | Msa1382660:intron | 60.0% |
| GCAGGTTTGGGCAGGCAATC+CGG | + | tig0020520:120427-120446 | Msa1382660:intron | 60.0% | |
| CAGCTGCATGGACCTGTGCA+AGG | - | tig0020520:120523-120542 | None:intergenic | 60.0% | |
| CGCCTCGGTTCTCGCCTTCA+AGG | + | tig0020520:115983-116002 | Msa1382660:CDS | 65.0% | |
| GCCCCAAGTGCCTCCGTCAT+CGG | + | tig0020520:117563-117582 | Msa1382660:CDS | 65.0% | |
| GCACTGGGCAGGTCACAGTG+CGG | + | tig0020520:118140-118159 | Msa1382660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020520 | gene | 115736 | 121128 | 115736 | ID=Msa1382660;Name=Msa1382660 |
| tig0020520 | mRNA | 115736 | 121128 | 115736 | ID=Msa1382660-mRNA-1;Parent=Msa1382660;Name=Msa1382660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|1|1|5|416|272 |
| tig0020520 | exon | 115736 | 116028 | 115736 | ID=Msa1382660-mRNA-1:exon:8171;Parent=Msa1382660-mRNA-1 |
| tig0020520 | exon | 117495 | 117638 | 117495 | ID=Msa1382660-mRNA-1:exon:8172;Parent=Msa1382660-mRNA-1 |
| tig0020520 | exon | 117941 | 118066 | 117941 | ID=Msa1382660-mRNA-1:exon:8173;Parent=Msa1382660-mRNA-1 |
| tig0020520 | exon | 118151 | 118302 | 118151 | ID=Msa1382660-mRNA-1:exon:8174;Parent=Msa1382660-mRNA-1 |
| tig0020520 | exon | 120431 | 121128 | 120431 | ID=Msa1382660-mRNA-1:exon:8175;Parent=Msa1382660-mRNA-1 |
| tig0020520 | five_prime_UTR | 115736 | 115913 | 115736 | ID=Msa1382660-mRNA-1:five_prime_utr;Parent=Msa1382660-mRNA-1 |
| tig0020520 | CDS | 115914 | 116028 | 115914 | ID=Msa1382660-mRNA-1:cds;Parent=Msa1382660-mRNA-1 |
| tig0020520 | CDS | 117495 | 117638 | 117495 | ID=Msa1382660-mRNA-1:cds;Parent=Msa1382660-mRNA-1 |
| tig0020520 | CDS | 117941 | 118066 | 117941 | ID=Msa1382660-mRNA-1:cds;Parent=Msa1382660-mRNA-1 |
| tig0020520 | CDS | 118151 | 118302 | 118151 | ID=Msa1382660-mRNA-1:cds;Parent=Msa1382660-mRNA-1 |
| tig0020520 | CDS | 120431 | 120712 | 120431 | ID=Msa1382660-mRNA-1:cds;Parent=Msa1382660-mRNA-1 |
| tig0020520 | three_prime_UTR | 120713 | 121128 | 120713 | ID=Msa1382660-mRNA-1:three_prime_utr;Parent=Msa1382660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
