AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004970 MtrunA17_Chr1g0151801 95.132 493 21 1 1 490 1 493 0.0 941
Msa0004970 MtrunA17_Chr3g0135491 72.617 493 121 6 3 490 1 484 0.0 742
Msa0004970 MtrunA17_Chr4g0056561 57.942 447 172 6 33 473 41 477 0.0 528
Msa0004970 MtrunA17_Chr7g0248651 50.905 442 202 5 46 476 35 472 2.04e-151 440
Msa0004970 MtrunA17_Chr7g0246051 57.511 233 99 0 46 278 34 266 2.21e-94 287
Msa0004970 MtrunA17_Chr7g0226421 65.909 132 45 0 52 183 28 159 1.70e-58 190
Msa0004970 MtrunA17_Chr7g0226441 47.895 190 87 2 292 473 13 198 2.80e-53 178
Msa0004970 MtrunA17_Chr7g0246061 40.722 194 108 4 285 476 1 189 1.37e-36 133
Msa0004970 MtrunA17_Chr7g0226431 69.014 71 22 0 215 285 1 71 1.60e-28 108
Msa0004970 MtrunA17_Chr2g0307771 30.409 171 116 3 59 227 44 213 1.65e-21 96.7
Msa0004970 MtrunA17_Chr1g0193781 28.488 172 118 4 59 227 34 203 2.42e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004970 AT4G32940.1 72.611 471 119 6 26 490 28 494 0.0 693
Msa0004970 AT2G25940.1 68.916 489 134 7 7 490 3 478 0.0 677
Msa0004970 AT1G62710.1 60.093 431 161 5 49 473 42 467 0.0 533
Msa0004970 AT3G20210.1 52.681 429 198 3 50 474 38 465 1.30e-152 443
Msa0004970 AT1G08750.3 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0004970 AT1G08750.2 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0004970 AT1G08750.1 29.050 179 124 3 51 227 20 197 9.55e-22 97.4

Find 177 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATCTCTTCCTATATT+TGG 0.063831 1_1:-7408290 Msa0004970:CDS
GAGCTCAATTACTATGATTT+TGG 0.156079 1_1:+7407222 None:intergenic
ATGCTGATCTCATTCATTTC+TGG 0.156966 1_1:-7408180 Msa0004970:CDS
CTGATTGGAAAGCTCTTATT+TGG 0.175472 1_1:-7407894 Msa0004970:CDS
TTGCTGGTTCTAATGGTTAT+TGG 0.191155 1_1:-7411582 Msa0004970:CDS
CTAATGGTTATTGGAATTAT+AGG 0.241588 1_1:-7411573 Msa0004970:CDS
AAAATAATTTCAAGGGATTA+TGG 0.245835 1_1:-7407080 Msa0004970:three_prime_UTR
ATGATGATGCTGTATATATT+TGG 0.250928 1_1:-7406847 Msa0004970:three_prime_UTR
GGAAATAAATCAGCTCTTAC+AGG 0.282325 1_1:-7409907 Msa0004970:CDS
GACCTTGTTCCCTATCATAT+TGG 0.296528 1_1:+7407006 None:intergenic
AATTTCTATGCTGCTTTACT+TGG 0.313296 1_1:-7409928 Msa0004970:CDS
TGAAGCACAAAAGGAAGTTT+TGG 0.318946 1_1:-7407958 Msa0004970:CDS
GATCACCACTTGTTGACAAC+TGG 0.329432 1_1:-7407827 Msa0004970:CDS
TAATAGTGTAAGTAGGTAAT+TGG 0.333430 1_1:-7406968 Msa0004970:three_prime_UTR
TATCTGGAGGCATGTGAATC+TGG 0.334996 1_1:-7409001 Msa0004970:CDS
CATGGAGGTCCAGGGGTTCT+TGG 0.340017 1_1:-7409823 Msa0004970:intron
AATCATCTCTTCCTATATTT+GGG 0.340373 1_1:-7408289 Msa0004970:CDS
GGGATTATGGCATTTATAAC+TGG 0.343812 1_1:-7407067 Msa0004970:three_prime_UTR
CATTCTCCTTCCTTCAATCA+TGG 0.352942 1_1:-7411788 Msa0004970:exon
TGCTAATGTGGTGCAGGTTA+AGG 0.359305 1_1:-7408377 Msa0004970:CDS
TGCTGATCTCATTCATTTCT+GGG 0.362031 1_1:-7408179 Msa0004970:CDS
AGAGAAGATTTAAATAATAA+AGG 0.366081 1_1:+7411832 None:intergenic
CATGATTCTGTAAATACAAT+TGG 0.366402 1_1:-7407309 Msa0004970:three_prime_UTR
CAGGATTTGTACCCAAATAT+AGG 0.367367 1_1:+7408278 None:intergenic
CCAAGGGTTGGGAGGAATAC+TGG 0.377257 1_1:+7407463 None:intergenic
GGTTCTCATGTGATGGAGTA+TGG 0.388016 1_1:-7408331 Msa0004970:CDS
GCTCTTATTTGGCATTGAAA+AGG 0.393897 1_1:-7407883 Msa0004970:CDS
TCTCATTCATTTCTGGGATA+AGG 0.394878 1_1:-7408173 Msa0004970:intron
GCGTAGATATTGATATCTTC+TGG 0.396831 1_1:+7408956 None:intergenic
TTACACTTAATACAAATTGT+TGG 0.402400 1_1:+7406651 None:intergenic
AGGACTATCAATGGTTACTA+TGG 0.412584 1_1:-7408352 Msa0004970:CDS
TGGAACACTACTAGGACATT+GGG 0.413330 1_1:-7407289 Msa0004970:three_prime_UTR
CTCGACAATGTTAGACCTGC+TGG 0.413552 1_1:-7407849 Msa0004970:CDS
TTTGTATACTACACTGATCA+TGG 0.415438 1_1:-7409841 Msa0004970:CDS
TCCGGGGAGGTCACGGCTAC+CGG 0.417671 1_1:+7411702 None:intergenic
CCATCCAAGCAATGCTGTAT+AGG 0.421967 1_1:+7408837 None:intergenic
CCCTTGGAGTTCTCTACAAA+GGG 0.422032 1_1:-7407447 Msa0004970:CDS
TAACAGCATAATTATGTTGT+TGG 0.428144 1_1:+7406702 None:intergenic
TGTTAGTCTTTATAGTTAGT+TGG 0.433025 1_1:-7406813 Msa0004970:three_prime_UTR
TGTGGATCTCTATCTCAGTA+TGG 0.435172 1_1:-7407572 Msa0004970:CDS
CACAAAACTAATATTGTCAT+TGG 0.435815 1_1:+7408255 None:intergenic
TTAATTATGACTCCAGGCCT+TGG 0.438134 1_1:+7410204 None:intergenic
AACATCCTTGCTGCTGTCTC+CGG 0.438904 1_1:-7411721 Msa0004970:CDS
CTCTTATTTGGCATTGAAAA+GGG 0.444223 1_1:-7407882 Msa0004970:CDS
AATACAATTGGAACACTACT+AGG 0.446735 1_1:-7407297 Msa0004970:three_prime_UTR
CTACTAGGACATTGGGGAGT+AGG 0.452123 1_1:-7407282 Msa0004970:three_prime_UTR
TGAGGCCTCGGCCATTTGCT+CGG 0.452146 1_1:+7407499 None:intergenic
CCTATACAGCATTGCTTGGA+TGG 0.453083 1_1:-7408837 Msa0004970:CDS
GTCTCTTCAGGTATGCCAGT+TGG 0.457359 1_1:-7409311 Msa0004970:intron
TACACTGATCATGGAGGTCC+AGG 0.458300 1_1:-7409832 Msa0004970:CDS
TGTAGAGAACTCCAAGGGTT+GGG 0.459757 1_1:+7407452 None:intergenic
GACGGTGAGAAAGAGGATAG+TGG 0.460059 1_1:+7411750 None:intergenic
ACAAGCTTGTGCTGAGGCCT+CGG 0.460376 1_1:+7407487 None:intergenic
TGAAGGTGATCTCAATTTCA+AGG 0.461933 1_1:+7408222 None:intergenic
GTCATGCGTATCAATTATTG+AGG 0.462318 1_1:-7410296 Msa0004970:CDS
CATATTGGACATTCCACAAC+AGG 0.464539 1_1:+7407021 None:intergenic
TACTAGGACATTGGGGAGTA+GGG 0.467212 1_1:-7407281 Msa0004970:three_prime_UTR
TTGGAACACTACTAGGACAT+TGG 0.467994 1_1:-7407290 Msa0004970:three_prime_UTR
AATTCTGTTGCAAAGTGTCT+AGG 0.469631 1_1:+7406931 None:intergenic
CTTATTTGCTAATGTGGTGC+AGG 0.471890 1_1:-7408383 Msa0004970:CDS
CTTTGGTTAACTGCTGTTGA+AGG 0.474696 1_1:+7408205 None:intergenic
TGTGGAATGTCCAATATGAT+AGG 0.476129 1_1:-7407016 Msa0004970:three_prime_UTR
TGGCAATCGGATATAATCTC+CGG 0.476800 1_1:+7411684 None:intergenic
CATCTCAATCTCAAGCCTCC+AGG 0.478973 1_1:-7411663 Msa0004970:CDS
AAACTAATATTGTCATTGGC+AGG 0.480772 1_1:+7408259 None:intergenic
GAATGAGATCAGCATCCCTT+TGG 0.480791 1_1:+7408188 None:intergenic
CCAGAGTACTCAACTTGCTT+AGG 0.481337 1_1:-7408863 Msa0004970:CDS
GCATACAAGTAAGGACCAAC+TGG 0.486355 1_1:+7409296 None:intergenic
TTTGCGAACATCTGCAATGC+AGG 0.487663 1_1:-7407530 Msa0004970:CDS
TTATTGGAATTATAGGCATC+AGG 0.488640 1_1:-7411566 Msa0004970:intron
GAAAATGATGACAACGTTGA+AGG 0.488978 1_1:-7411625 Msa0004970:CDS
TGATCTCTACTTGATATTGT+GGG 0.489618 1_1:-7407175 Msa0004970:three_prime_UTR
TAAGTAGGTAATTGGCAGAC+AGG 0.492905 1_1:-7406960 Msa0004970:three_prime_UTR
TGATGTCTTATTTGCTAATG+TGG 0.492908 1_1:-7408389 Msa0004970:CDS
ATGATCTCTACTTGATATTG+TGG 0.495704 1_1:-7407176 Msa0004970:three_prime_UTR
TCATAAACATCACCACCATC+AGG 0.496461 1_1:+7410177 None:intergenic
AGGAATACAAACCGAGCAAA+TGG 0.496796 1_1:-7407510 Msa0004970:CDS
GTTGAGTACTCTGGAGGAGG+GGG 0.498780 1_1:+7408872 None:intergenic
GTGACCTATACAGCATTGCT+TGG 0.499223 1_1:-7408841 Msa0004970:CDS
TGAGAAAAGTCCATGATTGA+AGG 0.499589 1_1:+7411778 None:intergenic
AGATCAGATGCATACAAGTA+AGG 0.499897 1_1:+7409287 None:intergenic
AAATGCAGTAGAAAGCAGTT+GGG 0.502368 1_1:-7408921 Msa0004970:CDS
ATCACCACTTGTTGACAACT+GGG 0.503223 1_1:-7407826 Msa0004970:CDS
GTGATGGAGTATGGTGATGT+AGG 0.504095 1_1:-7408322 Msa0004970:CDS
CAAATGCAGTAGAAAGCAGT+TGG 0.506782 1_1:-7408922 Msa0004970:CDS
GACAACAGTGTGAAACTGAT+TGG 0.509576 1_1:-7407909 Msa0004970:CDS
CCAGTATTCCTCCCAACCCT+TGG 0.511464 1_1:-7407463 Msa0004970:CDS
GAATCTGGCAGTATCTTTGA+AGG 0.512925 1_1:-7408986 Msa0004970:CDS
GCATTGCTTGGATGGAAGAC+AGG 0.514105 1_1:-7408829 Msa0004970:intron
GGTTTGTTAATTATGACTCC+AGG 0.517005 1_1:+7410198 None:intergenic
GGCAATCGGATATAATCTCC+GGG 0.519142 1_1:+7411685 None:intergenic
GAGAACCCTCAGGTGCTTTG+CGG 0.521251 1_1:+7407991 None:intergenic
TATAATCTCCGGGGAGGTCA+CGG 0.522714 1_1:+7411695 None:intergenic
ACATACTTGTTTGTGACAAG+AGG 0.524150 1_1:+7407150 None:intergenic
AGTTGGGGAACATATTGCCC+TGG 0.526331 1_1:-7408905 Msa0004970:CDS
CTTGAGATTGAGATGGCAAT+CGG 0.526844 1_1:+7411671 None:intergenic
TTCAGGCTCATGGAAGAACC+TGG 0.531469 1_1:+7411645 None:intergenic
AATACAACCCTATCACTGAA+TGG 0.531549 1_1:+7407112 None:intergenic
TCAGCTCTTACAGGTGGGAG+TGG 0.533587 1_1:-7409898 Msa0004970:CDS
GACCACAGTTCTGCCTGTTG+TGG 0.539312 1_1:-7407034 Msa0004970:three_prime_UTR
CAAGTTGAGTACTCTGGAGG+AGG 0.540236 1_1:+7408869 None:intergenic
TCCGGTAGCCGTGACCTCCC+CGG 0.541628 1_1:-7411703 Msa0004970:CDS
AATGTAGAGAATCCAAGGCC+TGG 0.541898 1_1:-7410216 Msa0004970:CDS
AAAATGATGACAACGTTGAA+GGG 0.542555 1_1:-7411624 Msa0004970:CDS
CCTAAGCAAGTTGAGTACTC+TGG 0.544668 1_1:+7408863 None:intergenic
GTTGGGGAACATATTGCCCT+GGG 0.545583 1_1:-7408904 Msa0004970:CDS
TTGTAGAGAACTCCAAGGGT+TGG 0.547173 1_1:+7407451 None:intergenic
GTTGCAGTGGCGTATGAAGT+TGG 0.550472 1_1:+7411864 None:intergenic
ATTCTGTTGCAAAGTGTCTA+GGG 0.556510 1_1:+7406932 None:intergenic
TCAAGATGACGGTGAGAAAG+AGG 0.557472 1_1:+7411743 None:intergenic
AGTTGAGTACTCTGGAGGAG+GGG 0.559521 1_1:+7408871 None:intergenic
GTTAAGGATAGGACTATCAA+TGG 0.561264 1_1:-7408361 Msa0004970:CDS
AGGCCTTGGATTCTCTACAT+TGG 0.562654 1_1:+7410218 None:intergenic
AGTGGGAAAGTTGTTGATAG+TGG 0.565083 1_1:-7409880 Msa0004970:CDS
GCGTATCAATTATTGAGGAA+TGG 0.567662 1_1:-7410291 Msa0004970:CDS
AGGAGAATGAATGAGTGAAG+AGG 0.569468 1_1:+7411802 None:intergenic
TTCTTATGACAGGATTACAC+TGG 0.570349 1_1:-7409970 Msa0004970:intron
AGCAAGGATGTTCAAGATGA+CGG 0.570580 1_1:+7411732 None:intergenic
GTCATAATTAACAAACCTGA+TGG 0.573212 1_1:-7410192 Msa0004970:CDS
AATTACTCACCAAGAACCCC+TGG 0.573730 1_1:+7409814 None:intergenic
ATTATGGCATTTATAACTGG+AGG 0.576560 1_1:-7407064 Msa0004970:three_prime_UTR
GCAGTTCCGCAAAGCACCTG+AGG 0.577006 1_1:-7407997 Msa0004970:intron
TTCAACAGCAGTTAACCAAA+GGG 0.582658 1_1:-7408203 Msa0004970:CDS
AAGTTGAGTACTCTGGAGGA+GGG 0.582976 1_1:+7408870 None:intergenic
TCAACAAGTGGTGATCCAGC+AGG 0.583241 1_1:+7407834 None:intergenic
ATGTGGTGCAGGTTAAGGAT+AGG 0.583690 1_1:-7408372 Msa0004970:CDS
CTTCCAATGTAGAGAATCCA+AGG 0.584961 1_1:-7410221 Msa0004970:CDS
ACAAACCGAGCAAATGGCCG+AGG 0.586423 1_1:-7407504 Msa0004970:CDS
TTACTATGGTTCTCATGTGA+TGG 0.587089 1_1:-7408338 Msa0004970:CDS
ACCCTTGGAGTTCTCTACAA+AGG 0.589043 1_1:-7407448 Msa0004970:CDS
AATAAATCAGCTCTTACAGG+TGG 0.589532 1_1:-7409904 Msa0004970:CDS
AAAAGTCCATGATTGAAGGA+AGG 0.592337 1_1:+7411782 None:intergenic
TGATGGAGTATGGTGATGTA+GGG 0.594785 1_1:-7408321 Msa0004970:CDS
ACACTGATCATGGAGGTCCA+GGG 0.595033 1_1:-7409831 Msa0004970:CDS
TGCATTGCAGATGTTCGCAA+AGG 0.599606 1_1:+7407532 None:intergenic
CAAAGGCTTTAATATGTCAC+CGG 0.602462 1_1:+7407250 None:intergenic
AGTATGGTATGAAACATATG+AGG 0.602512 1_1:-7407556 Msa0004970:CDS
CAGCTCTTACAGGTGGGAGT+GGG 0.602741 1_1:-7409897 Msa0004970:CDS
CAGTTCCGCAAAGCACCTGA+GGG 0.606664 1_1:-7407996 Msa0004970:CDS
CAATCCCAGTTGTCAACAAG+TGG 0.612244 1_1:+7407822 None:intergenic
CTGGAGGCTTGAGATTGAGA+TGG 0.612586 1_1:+7411664 None:intergenic
TATCAATTATTGAGGAATGG+TGG 0.612607 1_1:-7410288 Msa0004970:CDS
ATGACAACGTTGAAGGGACT+AGG 0.618129 1_1:-7411618 Msa0004970:CDS
GTCCAATATGATAGGGAACA+AGG 0.619802 1_1:-7407008 Msa0004970:three_prime_UTR
CACTGATCATGGAGGTCCAG+GGG 0.620699 1_1:-7409830 Msa0004970:CDS
GATCTCTACTTGATATTGTG+GGG 0.621074 1_1:-7407174 Msa0004970:three_prime_UTR
CTTCAACAGCAGTTAACCAA+AGG 0.621499 1_1:-7408204 Msa0004970:CDS
ATTTAAATAATAAAGGTGAG+AGG 0.628502 1_1:+7411839 None:intergenic
CCCTTTGTAGAGAACTCCAA+GGG 0.628994 1_1:+7407447 None:intergenic
CCCCTTTGTAGAGAACTCCA+AGG 0.630911 1_1:+7407446 None:intergenic
TTGTGTGTAATAGTGTAAGT+AGG 0.633094 1_1:-7406975 Msa0004970:three_prime_UTR
TGTTTATGAAGGAGTTCCAA+AGG 0.634134 1_1:-7410163 Msa0004970:intron
CTGGGATTGCCTCAAAACCA+TGG 0.636860 1_1:-7407808 Msa0004970:intron
ACAACGTTGAAGGGACTAGG+TGG 0.636966 1_1:-7411615 Msa0004970:CDS
ATAAATCAGCTCTTACAGGT+GGG 0.637399 1_1:-7409903 Msa0004970:CDS
TATCAATATCTACGCGACAA+CGG 0.638805 1_1:-7408948 Msa0004970:CDS
GATGGTGGTGATGTTTATGA+AGG 0.641773 1_1:-7410174 Msa0004970:CDS
AGAGAACTCCAAGGGTTGGG+AGG 0.643882 1_1:+7407455 None:intergenic
GTGGAATGTCCAATATGATA+GGG 0.649089 1_1:-7407015 Msa0004970:three_prime_UTR
AAGGTGAGAGGTAGTTGCAG+TGG 0.649923 1_1:+7411851 None:intergenic
ATAATTAACAAACCTGATGG+TGG 0.650511 1_1:-7410189 Msa0004970:CDS
TTATGGCATTTATAACTGGA+GGG 0.650588 1_1:-7407063 Msa0004970:three_prime_UTR
CAACGTTGAAGGGACTAGGT+GGG 0.651451 1_1:-7411614 Msa0004970:CDS
ACAGGATTACACTGGTGCAG+AGG 0.651826 1_1:-7409962 Msa0004970:intron
AATGCAGTAGAAAGCAGTTG+GGG 0.656559 1_1:-7408920 Msa0004970:CDS
AAGCAAGTTGAGTACTCTGG+AGG 0.665445 1_1:+7408866 None:intergenic
ATCGGATATAATCTCCGGGG+AGG 0.681142 1_1:+7411689 None:intergenic
CCTTGGAGTTCTCTACAAAG+GGG 0.681345 1_1:-7407446 Msa0004970:CDS
ACTGGTACAAGCTTGTGCTG+AGG 0.694000 1_1:+7407481 None:intergenic
GGAACACTACTAGGACATTG+GGG 0.694977 1_1:-7407288 Msa0004970:three_prime_UTR
AGGCTCATGGAAGAACCTGG+AGG 0.700785 1_1:+7411648 None:intergenic
TTCCACAACAGGCAGAACTG+TGG 0.706328 1_1:+7407032 None:intergenic
GGCTACCGGAGACAGCAGCA+AGG 0.718393 1_1:+7411716 None:intergenic
GTATACTACACTGATCATGG+AGG 0.754047 1_1:-7409838 Msa0004970:CDS
AAGCACCTGAGGGTTCTCCG+CGG 0.755716 1_1:-7407986 Msa0004970:CDS
TTGGGGAACATATTGCCCTG+GGG 0.755738 1_1:-7408903 Msa0004970:CDS
GCAATCGGATATAATCTCCG+GGG 0.767916 1_1:+7411686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATAAACTTTTTTTTAA+AGG - chr1_1:7407022-7407041 Msa0004970:three_prime_UTR 10.0%
!! TATTTATTTGTCTATTTAAT+TGG + chr1_1:7407113-7407132 None:intergenic 10.0%
!! TAAAAAAAAAAAAAAACTCA+AGG + chr1_1:7407263-7407282 None:intergenic 10.0%
!! TATTTCAAAATTGTATTTAT+TGG - chr1_1:7409124-7409143 Msa0004970:intron 10.0%
!!! ATACTAAAATAATTTTACAA+AGG + chr1_1:7411634-7411653 None:intergenic 10.0%
!! AGAGAAGATTTAAATAATAA+AGG + chr1_1:7406704-7406723 None:intergenic 15.0%
!!! CAAATAAATACTTTTTTTGA+AGG - chr1_1:7407123-7407142 Msa0004970:three_prime_UTR 15.0%
!! TTTATAAAAACTCAAGTATT+TGG + chr1_1:7407731-7407750 None:intergenic 15.0%
!! ATACAAAAATATGATCATTT+GGG + chr1_1:7408679-7408698 None:intergenic 15.0%
!! TATACAAAAATATGATCATT+TGG + chr1_1:7408680-7408699 None:intergenic 15.0%
!!! ATTTTTTTTGACTTATGTAA+TGG - chr1_1:7409495-7409514 Msa0004970:intron 15.0%
!!! AGTTTGTTTTTTATTGTATT+AGG - chr1_1:7410110-7410129 Msa0004970:intron 15.0%
!! GACTTTACATTAAAAAAATA+TGG - chr1_1:7410870-7410889 Msa0004970:intron 15.0%
!! TTAGAAAAATTAAGCTAAAA+AGG + chr1_1:7411768-7411787 None:intergenic 15.0%
!! ATTTAAATAATAAAGGTGAG+AGG + chr1_1:7406697-7406716 None:intergenic 20.0%
!!! ATGATTTTACCTATTTATGT+TGG + chr1_1:7407172-7407191 None:intergenic 20.0%
!!! ATCTGAGTTTTTATTTTTGT+CGG - chr1_1:7407292-7407311 Msa0004970:three_prime_UTR 20.0%
!! ATAAACTAATAATACAAGTC+TGG - chr1_1:7407358-7407377 Msa0004970:three_prime_UTR 20.0%
!!! GTTATCACTTGATTTTAATT+TGG - chr1_1:7407380-7407399 Msa0004970:three_prime_UTR 20.0%
!!! ACATTTTCATTAATCTGTAT+TGG + chr1_1:7407479-7407498 None:intergenic 20.0%
!!! ACTTATAATTTAAAGTCAAC+TGG - chr1_1:7407958-7407977 Msa0004970:CDS 20.0%
!!! ACATTCAACTATTTTCATTT+TGG + chr1_1:7408019-7408038 None:intergenic 20.0%
!! AATGAAAATAGTTGAATGTA+TGG - chr1_1:7408020-7408039 Msa0004970:intron 20.0%
!! ATGAAAATAGTTGAATGTAT+GGG - chr1_1:7408021-7408040 Msa0004970:intron 20.0%
!! TTGAAAAACAATTTATGTAC+AGG - chr1_1:7408051-7408070 Msa0004970:intron 20.0%
!! TGAAAAACAATTTATGTACA+GGG - chr1_1:7408052-7408071 Msa0004970:intron 20.0%
!! TTGAATATTATCACATGTAT+CGG + chr1_1:7408881-7408900 None:intergenic 20.0%
!! GAAATAATTAAATCCAAACA+TGG + chr1_1:7409391-7409410 None:intergenic 20.0%
!! TGTTTGGATTTAATTATTTC+AGG - chr1_1:7409391-7409410 Msa0004970:intron 20.0%
!! TTGCAAGAAAAATAATTTCA+AGG - chr1_1:7411445-7411464 Msa0004970:intron 20.0%
!! TGCAAGAAAAATAATTTCAA+GGG - chr1_1:7411446-7411465 Msa0004970:intron 20.0%
!! AAAATAATTTCAAGGGATTA+TGG - chr1_1:7411453-7411472 Msa0004970:intron 20.0%
!! TTACACTTAATACAAATTGT+TGG + chr1_1:7411885-7411904 None:intergenic 20.0%
! CTAATGGTTATTGGAATTAT+AGG - chr1_1:7406960-7406979 Msa0004970:three_prime_UTR 25.0%
!! CTTTAGAAACCAACATAAAT+AGG - chr1_1:7407160-7407179 Msa0004970:three_prime_UTR 25.0%
! AAATCATGAAGTGATTTGAT+TGG - chr1_1:7407185-7407204 Msa0004970:three_prime_UTR 25.0%
!!! TCTGAGTTTTTATTTTTGTC+GGG - chr1_1:7407293-7407312 Msa0004970:three_prime_UTR 25.0%
!!! CTGATATACATGACTTTTTT+TGG + chr1_1:7407530-7407549 None:intergenic 25.0%
! TAACATGTTGATACAATCTT+TGG + chr1_1:7407602-7407621 None:intergenic 25.0%
! TGAAAATAGTTGAATGTATG+GGG - chr1_1:7408022-7408041 Msa0004970:intron 25.0%
! ATTTATGTACAGGGATTAAA+TGG - chr1_1:7408061-7408080 Msa0004970:intron 25.0%
! AGATAATGTTGAATTTCAGA+AGG - chr1_1:7408098-7408117 Msa0004970:intron 25.0%
!! ACTAAAATTGACTTTACCTT+TGG + chr1_1:7408389-7408408 None:intergenic 25.0%
! AGCTATTGAATGTAACAATA+TGG + chr1_1:7408471-7408490 None:intergenic 25.0%
!! AAACTTTTTGATGAAAGACA+TGG - chr1_1:7408759-7408778 Msa0004970:intron 25.0%
! TAAGTTGTTTGTATGTGTTT+AGG - chr1_1:7408970-7408989 Msa0004970:CDS 25.0%
! ACAATAAACACACTATTTGT+CGG + chr1_1:7409031-7409050 None:intergenic 25.0%
!! TTTGATTGAATTGTGTTTTG+TGG - chr1_1:7409059-7409078 Msa0004970:intron 25.0%
!! TATTTCATTCCAACTGTTTT+TGG + chr1_1:7409106-7409125 None:intergenic 25.0%
!! GTTCCTTTCTATTTCTTATT+TGG - chr1_1:7409200-7409219 Msa0004970:intron 25.0%
! AGACCAAATAAGAAATAGAA+AGG + chr1_1:7409206-7409225 None:intergenic 25.0%
! AACTTACCAATTTATATTGC+TGG + chr1_1:7409979-7409998 None:intergenic 25.0%
! AATATGTGATTAAGCATTCA+AGG + chr1_1:7410081-7410100 None:intergenic 25.0%
! AATCATCTCTTCCTATATTT+GGG - chr1_1:7410244-7410263 Msa0004970:CDS 25.0%
! CACAAAACTAATATTGTCAT+TGG + chr1_1:7410281-7410300 None:intergenic 25.0%
!!! CAATGACAATATTAGTTTTG+TGG - chr1_1:7410279-7410298 Msa0004970:CDS 25.0%
! TTACGTTTAATTGAAATGCA+CGG + chr1_1:7410434-7410453 None:intergenic 25.0%
!! AACCAGATATTGAGTATTTT+TGG - chr1_1:7410504-7410523 Msa0004970:intron 25.0%
! TGAACAAAAAAAGCAGATTA+AGG + chr1_1:7410919-7410938 None:intergenic 25.0%
!!! TTAATCTGCTTTTTTTGTTC+AGG - chr1_1:7410918-7410937 Msa0004970:intron 25.0%
!! TTTTACAAAGTGCACATTTT+AGG + chr1_1:7411128-7411147 None:intergenic 25.0%
! CATGATTCTGTAAATACAAT+TGG - chr1_1:7411224-7411243 Msa0004970:intron 25.0%
!! TCTCAATTTCTTTTGATAGA+TGG - chr1_1:7411332-7411351 Msa0004970:intron 25.0%
!! TTTTTAATCCATTCAGTGAT+AGG - chr1_1:7411413-7411432 Msa0004970:intron 25.0%
!! TTTTAATCCATTCAGTGATA+GGG - chr1_1:7411414-7411433 Msa0004970:intron 25.0%
! TAATAGTGTAAGTAGGTAAT+TGG - chr1_1:7411565-7411584 Msa0004970:intron 25.0%
!! ATGATGATGCTGTATATATT+TGG - chr1_1:7411686-7411705 Msa0004970:CDS 25.0%
!!! TGTTAGTCTTTATAGTTAGT+TGG - chr1_1:7411720-7411739 Msa0004970:CDS 25.0%
! TAACAGCATAATTATGTTGT+TGG + chr1_1:7411834-7411853 None:intergenic 25.0%
AAAATGATGACAACGTTGAA+GGG - chr1_1:7406909-7406928 Msa0004970:three_prime_UTR 30.0%
!!! ATTTTACTTGCTGGTTCTAA+TGG - chr1_1:7406944-7406963 Msa0004970:three_prime_UTR 30.0%
TTATTGGAATTATAGGCATC+AGG - chr1_1:7406967-7406986 Msa0004970:three_prime_UTR 30.0%
AGTAACATCATCAAAGACAA+AGG + chr1_1:7407234-7407253 None:intergenic 30.0%
!!! CTGAGTTTTTATTTTTGTCG+GGG - chr1_1:7407294-7407313 Msa0004970:three_prime_UTR 30.0%
AATTTGGTCTCTATCAGAAT+TGG - chr1_1:7407396-7407415 Msa0004970:three_prime_UTR 30.0%
CGTATATGTTTCACATTCAT+TGG - chr1_1:7407566-7407585 Msa0004970:CDS 30.0%
TTGACTAATCCTAATCTGAA+GGG + chr1_1:7407700-7407719 None:intergenic 30.0%
ATTGACTAATCCTAATCTGA+AGG + chr1_1:7407701-7407720 None:intergenic 30.0%
TATCAATTATTGAGGAATGG+TGG - chr1_1:7408245-7408264 Msa0004970:CDS 30.0%
GTCATAATTAACAAACCTGA+TGG - chr1_1:7408341-7408360 Msa0004970:CDS 30.0%
ATAATTAACAAACCTGATGG+TGG - chr1_1:7408344-7408363 Msa0004970:CDS 30.0%
!! TAAGAGCTTTTTCTTATGAC+AGG - chr1_1:7408553-7408572 Msa0004970:intron 30.0%
!! AATTTCTATGCTGCTTTACT+TGG - chr1_1:7408605-7408624 Msa0004970:intron 30.0%
TTTGTATACTACACTGATCA+TGG - chr1_1:7408692-7408711 Msa0004970:intron 30.0%
TAACACTAACATATCGACAT+TGG + chr1_1:7408928-7408947 None:intergenic 30.0%
CACAATAAACCAAAAACAGT+TGG - chr1_1:7409094-7409113 Msa0004970:intron 30.0%
! ATTTCTTATTTGGTCTCTTC+AGG - chr1_1:7409210-7409229 Msa0004970:intron 30.0%
TTGAAGAAAAAACATGCTTC+TGG - chr1_1:7409279-7409298 Msa0004970:CDS 30.0%
ACTATTACTAGTGACTTACT+AGG + chr1_1:7409317-7409336 None:intergenic 30.0%
! AGCTTGCATAATAAACCTTT+TGG - chr1_1:7409435-7409454 Msa0004970:intron 30.0%
!! TTAGTTTGTCTTCAACCAAA+AGG + chr1_1:7409453-7409472 None:intergenic 30.0%
TTATAACCATACAATCACCA+TGG - chr1_1:7409786-7409805 Msa0004970:intron 30.0%
TTTGCACCAGCAATATAAAT+TGG - chr1_1:7409970-7409989 Msa0004970:intron 30.0%
CAAGTGAGCAACAATTTATA+AGG + chr1_1:7410007-7410026 None:intergenic 30.0%
!! TGATGTCTTATTTGCTAATG+TGG - chr1_1:7410144-7410163 Msa0004970:intron 30.0%
CAATCATCTCTTCCTATATT+TGG - chr1_1:7410243-7410262 Msa0004970:CDS 30.0%
AAACTAATATTGTCATTGGC+AGG + chr1_1:7410277-7410296 None:intergenic 30.0%
AAACATCCAAATGCAATTGA+CGG - chr1_1:7410459-7410478 Msa0004970:intron 30.0%
AATACTCAATATCTGGTTAC+TGG + chr1_1:7410502-7410521 None:intergenic 30.0%
CACCAAAAATACTCAATATC+TGG + chr1_1:7410509-7410528 None:intergenic 30.0%
!!! TGAGTATTTTTGGTGTTCAT+TGG - chr1_1:7410514-7410533 Msa0004970:intron 30.0%
! CTCTTATTTGGCATTGAAAA+GGG - chr1_1:7410651-7410670 Msa0004970:intron 30.0%
AGTATGGTATGAAACATATG+AGG - chr1_1:7410977-7410996 Msa0004970:intron 30.0%
AATACAATTGGAACACTACT+AGG - chr1_1:7411236-7411255 Msa0004970:intron 30.0%
! CTATGATTTTGGATGAACAA+AGG + chr1_1:7411303-7411322 None:intergenic 30.0%
! GAGCTCAATTACTATGATTT+TGG + chr1_1:7411314-7411333 None:intergenic 30.0%
ATGATCTCTACTTGATATTG+TGG - chr1_1:7411357-7411376 Msa0004970:intron 30.0%
TGATCTCTACTTGATATTGT+GGG - chr1_1:7411358-7411377 Msa0004970:intron 30.0%
ATTATGGCATTTATAACTGG+AGG - chr1_1:7411469-7411488 Msa0004970:intron 30.0%
TTATGGCATTTATAACTGGA+GGG - chr1_1:7411470-7411489 Msa0004970:intron 30.0%
TTGTGTGTAATAGTGTAAGT+AGG - chr1_1:7411558-7411577 Msa0004970:intron 30.0%
AAAAGTCCATGATTGAAGGA+AGG + chr1_1:7406754-7406773 None:intergenic 35.0%
TGAGAAAAGTCCATGATTGA+AGG + chr1_1:7406758-7406777 None:intergenic 35.0%
! TCAACGTTGTCATCATTTTC+AGG + chr1_1:7406908-7406927 None:intergenic 35.0%
GAAAATGATGACAACGTTGA+AGG - chr1_1:7406908-7406927 Msa0004970:three_prime_UTR 35.0%
!! TTGCTGGTTCTAATGGTTAT+TGG - chr1_1:7406951-7406970 Msa0004970:three_prime_UTR 35.0%
TGTCTCTCTATCAATTTCGA+TGG - chr1_1:7407626-7407645 Msa0004970:intron 35.0%
!! TTTTTGTTGCTTGCTTCATC+AGG - chr1_1:7408205-7408224 Msa0004970:CDS 35.0%
GTCATGCGTATCAATTATTG+AGG - chr1_1:7408237-7408256 Msa0004970:CDS 35.0%
GCGTATCAATTATTGAGGAA+TGG - chr1_1:7408242-7408261 Msa0004970:CDS 35.0%
!! GGTTTGTTAATTATGACTCC+AGG + chr1_1:7408338-7408357 None:intergenic 35.0%
TGTTTATGAAGGAGTTCCAA+AGG - chr1_1:7408370-7408389 Msa0004970:CDS 35.0%
TTCTTATGACAGGATTACAC+TGG - chr1_1:7408563-7408582 Msa0004970:intron 35.0%
GGAAATAAATCAGCTCTTAC+AGG - chr1_1:7408626-7408645 Msa0004970:intron 35.0%
AATAAATCAGCTCTTACAGG+TGG - chr1_1:7408629-7408648 Msa0004970:intron 35.0%
ATAAATCAGCTCTTACAGGT+GGG - chr1_1:7408630-7408649 Msa0004970:intron 35.0%
! ACGTCTTCAATTTGAAGTGA+CGG + chr1_1:7408821-7408840 None:intergenic 35.0%
CTTCAAATTGAAGACGTGTT+TGG - chr1_1:7408824-7408843 Msa0004970:intron 35.0%
!! TATTTTTGTTCGACACGTGT+GGG + chr1_1:7408853-7408872 None:intergenic 35.0%
!! AAAAGCTTAAGCCTTGTTTG+AGG - chr1_1:7408999-7409018 Msa0004970:CDS 35.0%
AGATCAGATGCATACAAGTA+AGG + chr1_1:7409249-7409268 None:intergenic 35.0%
GAAGAACTACACAGAACAAA+CGG + chr1_1:7409369-7409388 None:intergenic 35.0%
AAAAAATTAGTGCGCGAGTT+TGG + chr1_1:7409482-7409501 None:intergenic 35.0%
GACTTATGTAATGGTGTAAC+AGG - chr1_1:7409504-7409523 Msa0004970:intron 35.0%
! GGTGTAACAGGTATTTTATC+TGG - chr1_1:7409516-7409535 Msa0004970:intron 35.0%
! GTAACAGGTATTTTATCTGG+AGG - chr1_1:7409519-7409538 Msa0004970:intron 35.0%
GCGTAGATATTGATATCTTC+TGG + chr1_1:7409580-7409599 None:intergenic 35.0%
TATCAATATCTACGCGACAA+CGG - chr1_1:7409585-7409604 Msa0004970:intron 35.0%
AAATGCAGTAGAAAGCAGTT+GGG - chr1_1:7409612-7409631 Msa0004970:intron 35.0%
AGACAGGTATGTAACTAAGA+AGG - chr1_1:7409720-7409739 Msa0004970:intron 35.0%
!!! CAAAGTTTTGAACTACTCCA+TGG + chr1_1:7409806-7409825 None:intergenic 35.0%
GTTAAGGATAGGACTATCAA+TGG - chr1_1:7410172-7410191 Msa0004970:CDS 35.0%
AGGACTATCAATGGTTACTA+TGG - chr1_1:7410181-7410200 Msa0004970:CDS 35.0%
TTACTATGGTTCTCATGTGA+TGG - chr1_1:7410195-7410214 Msa0004970:CDS 35.0%
CAGGATTTGTACCCAAATAT+AGG + chr1_1:7410258-7410277 None:intergenic 35.0%
TGAAGGTGATCTCAATTTCA+AGG + chr1_1:7410314-7410333 None:intergenic 35.0%
TTCAACAGCAGTTAACCAAA+GGG - chr1_1:7410330-7410349 Msa0004970:intron 35.0%
ATGCTGATCTCATTCATTTC+TGG - chr1_1:7410353-7410372 Msa0004970:intron 35.0%
TGCTGATCTCATTCATTTCT+GGG - chr1_1:7410354-7410373 Msa0004970:intron 35.0%
!! TCTCATTCATTTCTGGGATA+AGG - chr1_1:7410360-7410379 Msa0004970:intron 35.0%
!! TTTTGTGCTTCATTTTTCCG+CGG + chr1_1:7410567-7410586 None:intergenic 35.0%
! TGAAGCACAAAAGGAAGTTT+TGG - chr1_1:7410575-7410594 Msa0004970:intron 35.0%
CTGATTGGAAAGCTCTTATT+TGG - chr1_1:7410639-7410658 Msa0004970:intron 35.0%
! GCTCTTATTTGGCATTGAAA+AGG - chr1_1:7410650-7410669 Msa0004970:intron 35.0%
AATCAAGAGAAGTAGTACCA+TGG + chr1_1:7410745-7410764 None:intergenic 35.0%
! TCAGCTTCATCTATCTTTTC+TGG - chr1_1:7410764-7410783 Msa0004970:intron 35.0%
AGTCATGCAAATTCATCACA+AGG + chr1_1:7410854-7410873 None:intergenic 35.0%
!!! AAGACTTTTGAGACACATTG+TGG - chr1_1:7410943-7410962 Msa0004970:intron 35.0%
! CAAAGGCTTTAATATGTCAC+CGG + chr1_1:7411286-7411305 None:intergenic 35.0%
GATCTCTACTTGATATTGTG+GGG - chr1_1:7411359-7411378 Msa0004970:intron 35.0%
ACATACTTGTTTGTGACAAG+AGG + chr1_1:7411386-7411405 None:intergenic 35.0%
AATACAACCCTATCACTGAA+TGG + chr1_1:7411424-7411443 None:intergenic 35.0%
GGGATTATGGCATTTATAAC+TGG - chr1_1:7411466-7411485 Msa0004970:intron 35.0%
TGTGGAATGTCCAATATGAT+AGG - chr1_1:7411517-7411536 Msa0004970:intron 35.0%
GTGGAATGTCCAATATGATA+GGG - chr1_1:7411518-7411537 Msa0004970:intron 35.0%
! ATTCTGTTGCAAAGTGTCTA+GGG + chr1_1:7411604-7411623 None:intergenic 35.0%
! AATTCTGTTGCAAAGTGTCT+AGG + chr1_1:7411605-7411624 None:intergenic 35.0%
AGGAGAATGAATGAGTGAAG+AGG + chr1_1:7406734-7406753 None:intergenic 40.0%
CATTCTCCTTCCTTCAATCA+TGG - chr1_1:7406745-7406764 Msa0004970:three_prime_UTR 40.0%
AGCAAGGATGTTCAAGATGA+CGG + chr1_1:7406804-7406823 None:intergenic 40.0%
TGGCAATCGGATATAATCTC+CGG + chr1_1:7406852-7406871 None:intergenic 40.0%
CTTGAGATTGAGATGGCAAT+CGG + chr1_1:7406865-7406884 None:intergenic 40.0%
!! TGTCATCATTTTCAGGCTCA+TGG + chr1_1:7406901-7406920 None:intergenic 40.0%
AGTGTCATGAGATAAGAGTG+AGG + chr1_1:7407456-7407475 None:intergenic 40.0%
GCGGTGGTATTTAAAAGCTT+TGG + chr1_1:7407657-7407676 None:intergenic 40.0%
! CTTTTAAATACCACCGCAAG+TGG - chr1_1:7407660-7407679 Msa0004970:intron 40.0%
CTCACTTCTATAGCTGACAT+CGG + chr1_1:7407993-7408012 None:intergenic 40.0%
CTTCCAATGTAGAGAATCCA+AGG - chr1_1:7408312-7408331 Msa0004970:CDS 40.0%
TTAATTATGACTCCAGGCCT+TGG + chr1_1:7408332-7408351 None:intergenic 40.0%
TCATAAACATCACCACCATC+AGG + chr1_1:7408359-7408378 None:intergenic 40.0%
! GATGGTGGTGATGTTTATGA+AGG - chr1_1:7408359-7408378 Msa0004970:CDS 40.0%
ACGTCTTTAGTGTGAAGTGT+CGG + chr1_1:7408427-7408446 None:intergenic 40.0%
! AGTGGGAAAGTTGTTGATAG+TGG - chr1_1:7408653-7408672 Msa0004970:intron 40.0%
GTATACTACACTGATCATGG+AGG - chr1_1:7408695-7408714 Msa0004970:intron 40.0%
!! GTATTTTTGTTCGACACGTG+TGG + chr1_1:7408854-7408873 None:intergenic 40.0%
CTGTGTAGTTCTTCCATGTT+TGG - chr1_1:7409375-7409394 Msa0004970:intron 40.0%
GAATCTGGCAGTATCTTTGA+AGG - chr1_1:7409547-7409566 Msa0004970:intron 40.0%
CAAATGCAGTAGAAAGCAGT+TGG - chr1_1:7409611-7409630 Msa0004970:intron 40.0%
AATGCAGTAGAAAGCAGTTG+GGG - chr1_1:7409613-7409632 Msa0004970:intron 40.0%
ACTACTCCATGGTGATTGTA+TGG + chr1_1:7409795-7409814 None:intergenic 40.0%
! CTTATTTGCTAATGTGGTGC+AGG - chr1_1:7410150-7410169 Msa0004970:intron 40.0%
! TGATGGAGTATGGTGATGTA+GGG - chr1_1:7410212-7410231 Msa0004970:CDS 40.0%
CTTTGGTTAACTGCTGTTGA+AGG + chr1_1:7410331-7410350 None:intergenic 40.0%
CTTCAACAGCAGTTAACCAA+AGG - chr1_1:7410329-7410348 Msa0004970:intron 40.0%
TGGTTACTGGATCTTGTTCT+CGG + chr1_1:7410489-7410508 None:intergenic 40.0%
GCGGAAAAATGAAGCACAAA+AGG - chr1_1:7410566-7410585 Msa0004970:intron 40.0%
!! TTTTGGAAGCAATGTCTCAC+AGG - chr1_1:7410592-7410611 Msa0004970:intron 40.0%
GACAACAGTGTGAAACTGAT+TGG - chr1_1:7410624-7410643 Msa0004970:intron 40.0%
! ATCACCACTTGTTGACAACT+GGG - chr1_1:7410707-7410726 Msa0004970:intron 40.0%
!! GAAGTAGTACCATGGTTTTG+AGG + chr1_1:7410737-7410756 None:intergenic 40.0%
!! TTGCTTTTATGCCTAAGCCA+TGG - chr1_1:7410809-7410828 Msa0004970:intron 40.0%
! TGCTTTTATGCCTAAGCCAT+GGG - chr1_1:7410810-7410829 Msa0004970:intron 40.0%
!! CAGTTTTATCATTGCTCCCA+TGG + chr1_1:7410829-7410848 None:intergenic 40.0%
TGTGGATCTCTATCTCAGTA+TGG - chr1_1:7410961-7410980 Msa0004970:intron 40.0%
AGGAATACAAACCGAGCAAA+TGG - chr1_1:7411023-7411042 Msa0004970:intron 40.0%
TTGGAACACTACTAGGACAT+TGG - chr1_1:7411243-7411262 Msa0004970:intron 40.0%
TGGAACACTACTAGGACATT+GGG - chr1_1:7411244-7411263 Msa0004970:intron 40.0%
CATATTGGACATTCCACAAC+AGG + chr1_1:7411515-7411534 None:intergenic 40.0%
GTCCAATATGATAGGGAACA+AGG - chr1_1:7411525-7411544 Msa0004970:intron 40.0%
GACCTTGTTCCCTATCATAT+TGG + chr1_1:7411530-7411549 None:intergenic 40.0%
TAAGTAGGTAATTGGCAGAC+AGG - chr1_1:7411573-7411592 Msa0004970:CDS 40.0%
! TCAAGATGACGGTGAGAAAG+AGG + chr1_1:7406793-7406812 None:intergenic 45.0%
GCAATCGGATATAATCTCCG+GGG + chr1_1:7406850-7406869 None:intergenic 45.0%
GGCAATCGGATATAATCTCC+GGG + chr1_1:7406851-7406870 None:intergenic 45.0%
ATGACAACGTTGAAGGGACT+AGG - chr1_1:7406915-7406934 Msa0004970:three_prime_UTR 45.0%
!!! AGGTGGGCTATTTTACTTGC+TGG - chr1_1:7406935-7406954 Msa0004970:three_prime_UTR 45.0%
GAGAATGGACCCTTCAGATT+AGG - chr1_1:7407688-7407707 Msa0004970:intron 45.0%
AGGCCTTGGATTCTCTACAT+TGG + chr1_1:7408318-7408337 None:intergenic 45.0%
AATGTAGAGAATCCAAGGCC+TGG - chr1_1:7408317-7408336 Msa0004970:CDS 45.0%
AATTACTCACCAAGAACCCC+TGG + chr1_1:7408722-7408741 None:intergenic 45.0%
GCATACAAGTAAGGACCAAC+TGG + chr1_1:7409240-7409259 None:intergenic 45.0%
! TATCTGGAGGCATGTGAATC+TGG - chr1_1:7409532-7409551 Msa0004970:intron 45.0%
! AAGTTGAGTACTCTGGAGGA+GGG + chr1_1:7409666-7409685 None:intergenic 45.0%
! AAGCAAGTTGAGTACTCTGG+AGG + chr1_1:7409670-7409689 None:intergenic 45.0%
! CCTAAGCAAGTTGAGTACTC+TGG + chr1_1:7409673-7409692 None:intergenic 45.0%
! CCAGAGTACTCAACTTGCTT+AGG - chr1_1:7409670-7409689 Msa0004970:intron 45.0%
GTGACCTATACAGCATTGCT+TGG - chr1_1:7409692-7409711 Msa0004970:intron 45.0%
CCATCCAAGCAATGCTGTAT+AGG + chr1_1:7409699-7409718 None:intergenic 45.0%
CCTATACAGCATTGCTTGGA+TGG - chr1_1:7409696-7409715 Msa0004970:intron 45.0%
TGCTAATGTGGTGCAGGTTA+AGG - chr1_1:7410156-7410175 Msa0004970:intron 45.0%
ATGTGGTGCAGGTTAAGGAT+AGG - chr1_1:7410161-7410180 Msa0004970:intron 45.0%
! GGTTCTCATGTGATGGAGTA+TGG - chr1_1:7410202-7410221 Msa0004970:CDS 45.0%
! GTGATGGAGTATGGTGATGT+AGG - chr1_1:7410211-7410230 Msa0004970:CDS 45.0%
GAATGAGATCAGCATCCCTT+TGG + chr1_1:7410348-7410367 None:intergenic 45.0%
GGTTACTGGATCTTGTTCTC+GGG + chr1_1:7410488-7410507 None:intergenic 45.0%
! GATCACCACTTGTTGACAAC+TGG - chr1_1:7410706-7410725 Msa0004970:intron 45.0%
CAATCCCAGTTGTCAACAAG+TGG + chr1_1:7410714-7410733 None:intergenic 45.0%
TATCATTGCTCCCATGGCTT+AGG + chr1_1:7410823-7410842 None:intergenic 45.0%
TGCATTGCAGATGTTCGCAA+AGG + chr1_1:7411004-7411023 None:intergenic 45.0%
TTTGCGAACATCTGCAATGC+AGG - chr1_1:7411003-7411022 Msa0004970:intron 45.0%
TGTAGAGAACTCCAAGGGTT+GGG + chr1_1:7411084-7411103 None:intergenic 45.0%
TTGTAGAGAACTCCAAGGGT+TGG + chr1_1:7411085-7411104 None:intergenic 45.0%
ACCCTTGGAGTTCTCTACAA+AGG - chr1_1:7411085-7411104 Msa0004970:intron 45.0%
CCCTTTGTAGAGAACTCCAA+GGG + chr1_1:7411089-7411108 None:intergenic 45.0%
CCCTTGGAGTTCTCTACAAA+GGG - chr1_1:7411086-7411105 Msa0004970:intron 45.0%
CCTTGGAGTTCTCTACAAAG+GGG - chr1_1:7411087-7411106 Msa0004970:intron 45.0%
GGAACACTACTAGGACATTG+GGG - chr1_1:7411245-7411264 Msa0004970:intron 45.0%
TACTAGGACATTGGGGAGTA+GGG - chr1_1:7411252-7411271 Msa0004970:intron 45.0%
GTTGCAGTGGCGTATGAAGT+TGG + chr1_1:7406672-7406691 None:intergenic 50.0%
AAGGTGAGAGGTAGTTGCAG+TGG + chr1_1:7406685-7406704 None:intergenic 50.0%
GACGGTGAGAAAGAGGATAG+TGG + chr1_1:7406786-7406805 None:intergenic 50.0%
AACATCCTTGCTGCTGTCTC+CGG - chr1_1:7406812-7406831 Msa0004970:three_prime_UTR 50.0%
TATAATCTCCGGGGAGGTCA+CGG + chr1_1:7406841-7406860 None:intergenic 50.0%
ATCGGATATAATCTCCGGGG+AGG + chr1_1:7406847-7406866 None:intergenic 50.0%
CTGGAGGCTTGAGATTGAGA+TGG + chr1_1:7406872-7406891 None:intergenic 50.0%
CATCTCAATCTCAAGCCTCC+AGG - chr1_1:7406870-7406889 Msa0004970:three_prime_UTR 50.0%
TTCAGGCTCATGGAAGAACC+TGG + chr1_1:7406891-7406910 None:intergenic 50.0%
ACAACGTTGAAGGGACTAGG+TGG - chr1_1:7406918-7406937 Msa0004970:three_prime_UTR 50.0%
CAACGTTGAAGGGACTAGGT+GGG - chr1_1:7406919-7406938 Msa0004970:three_prime_UTR 50.0%
CCATTCTCATCGTCCACTTG+CGG + chr1_1:7407676-7407695 None:intergenic 50.0%
ACAGGATTACACTGGTGCAG+AGG - chr1_1:7408571-7408590 Msa0004970:intron 50.0%
TACACTGATCATGGAGGTCC+AGG - chr1_1:7408701-7408720 Msa0004970:intron 50.0%
ACACTGATCATGGAGGTCCA+GGG - chr1_1:7408702-7408721 Msa0004970:intron 50.0%
GTCGGCAATAGCCTCAAACA+AGG + chr1_1:7409013-7409032 None:intergenic 50.0%
GTCTCTTCAGGTATGCCAGT+TGG - chr1_1:7409222-7409241 Msa0004970:intron 50.0%
AGTTGGGGAACATATTGCCC+TGG - chr1_1:7409628-7409647 Msa0004970:intron 50.0%
GTTGGGGAACATATTGCCCT+GGG - chr1_1:7409629-7409648 Msa0004970:intron 50.0%
TTGGGGAACATATTGCCCTG+GGG - chr1_1:7409630-7409649 Msa0004970:intron 50.0%
! AGTTGAGTACTCTGGAGGAG+GGG + chr1_1:7409665-7409684 None:intergenic 50.0%
! CAAGTTGAGTACTCTGGAGG+AGG + chr1_1:7409667-7409686 None:intergenic 50.0%
GCATTGCTTGGATGGAAGAC+AGG - chr1_1:7409704-7409723 Msa0004970:intron 50.0%
GGGCATCCGTCAATTGCATT+TGG + chr1_1:7410468-7410487 None:intergenic 50.0%
CTCGACAATGTTAGACCTGC+TGG - chr1_1:7410684-7410703 Msa0004970:intron 50.0%
TCAACAAGTGGTGATCCAGC+AGG + chr1_1:7410702-7410721 None:intergenic 50.0%
CTGGGATTGCCTCAAAACCA+TGG - chr1_1:7410725-7410744 Msa0004970:intron 50.0%
ACTGGTACAAGCTTGTGCTG+AGG + chr1_1:7411055-7411074 None:intergenic 50.0%
CCCCTTTGTAGAGAACTCCA+AGG + chr1_1:7411090-7411109 None:intergenic 50.0%
CTACTAGGACATTGGGGAGT+AGG - chr1_1:7411251-7411270 Msa0004970:intron 50.0%
!! GGGGAGTAGGGTTTTAGTAC+CGG - chr1_1:7411264-7411283 Msa0004970:intron 50.0%
TTCCACAACAGGCAGAACTG+TGG + chr1_1:7411504-7411523 None:intergenic 50.0%
AGGCTCATGGAAGAACCTGG+AGG + chr1_1:7406888-7406907 None:intergenic 55.0%
TTCTCATCGTCCACTTGCGG+TGG + chr1_1:7407673-7407692 None:intergenic 55.0%
CCGCAAGTGGACGATGAGAA+TGG - chr1_1:7407673-7407692 Msa0004970:intron 55.0%
TCAGCTCTTACAGGTGGGAG+TGG - chr1_1:7408635-7408654 Msa0004970:intron 55.0%
CAGCTCTTACAGGTGGGAGT+GGG - chr1_1:7408636-7408655 Msa0004970:intron 55.0%
CACTGATCATGGAGGTCCAG+GGG - chr1_1:7408703-7408722 Msa0004970:intron 55.0%
! GTTGAGTACTCTGGAGGAGG+GGG + chr1_1:7409664-7409683 None:intergenic 55.0%
! CAGTTCCGCAAAGCACCTGA+GGG - chr1_1:7410537-7410556 Msa0004970:intron 55.0%
GAGAACCCTCAGGTGCTTTG+CGG + chr1_1:7410545-7410564 None:intergenic 55.0%
! TTTTTCCGCGGAGAACCCTC+AGG + chr1_1:7410555-7410574 None:intergenic 55.0%
ACAAACCGAGCAAATGGCCG+AGG - chr1_1:7411029-7411048 Msa0004970:intron 55.0%
ACAAGCTTGTGCTGAGGCCT+CGG + chr1_1:7411049-7411068 None:intergenic 55.0%
CCAAGGGTTGGGAGGAATAC+TGG + chr1_1:7411073-7411092 None:intergenic 55.0%
CCAGTATTCCTCCCAACCCT+TGG - chr1_1:7411070-7411089 Msa0004970:intron 55.0%
AGAGAACTCCAAGGGTTGGG+AGG + chr1_1:7411081-7411100 None:intergenic 55.0%
GACCACAGTTCTGCCTGTTG+TGG - chr1_1:7411499-7411518 Msa0004970:intron 55.0%
CATGGAGGTCCAGGGGTTCT+TGG - chr1_1:7408710-7408729 Msa0004970:intron 60.0%
! AGTACTCTGGAGGAGGGGGA+GGG + chr1_1:7409660-7409679 None:intergenic 60.0%
! GCAGTTCCGCAAAGCACCTG+AGG - chr1_1:7410536-7410555 Msa0004970:intron 60.0%
AAGCACCTGAGGGTTCTCCG+CGG - chr1_1:7410547-7410566 Msa0004970:intron 60.0%
TGAGGCCTCGGCCATTTGCT+CGG + chr1_1:7411037-7411056 None:intergenic 60.0%
GGCTACCGGAGACAGCAGCA+AGG + chr1_1:7406820-7406839 None:intergenic 65.0%
! GAGTACTCTGGAGGAGGGGG+AGG + chr1_1:7409661-7409680 None:intergenic 65.0%
TCCGGTAGCCGTGACCTCCC+CGG - chr1_1:7406830-7406849 Msa0004970:three_prime_UTR 70.0%
TCCGGGGAGGTCACGGCTAC+CGG + chr1_1:7406834-7406853 None:intergenic 70.0%
!! GAGGGGGAGGGTACTCCCCA+GGG + chr1_1:7409648-7409667 None:intergenic 70.0%
!! GGAGGGGGAGGGTACTCCCC+AGG + chr1_1:7409649-7409668 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7406635 7411920 7406635 ID=Msa0004970;Name=Msa0004970
chr1_1 mRNA 7406635 7411920 7406635 ID=Msa0004970-mRNA-1;Parent=Msa0004970;Name=Msa0004970-mRNA-1;_AED=0.08;_eAED=0.08;_QI=129|0.85|0.87|1|1|1|8|798|490
chr1_1 exon 7406635 7407615 7406635 ID=Msa0004970-mRNA-1:exon:2643;Parent=Msa0004970-mRNA-1
chr1_1 exon 7407809 7408015 7407809 ID=Msa0004970-mRNA-1:exon:2642;Parent=Msa0004970-mRNA-1
chr1_1 exon 7408174 7408423 7408174 ID=Msa0004970-mRNA-1:exon:2641;Parent=Msa0004970-mRNA-1
chr1_1 exon 7408830 7409029 7408830 ID=Msa0004970-mRNA-1:exon:2640;Parent=Msa0004970-mRNA-1
chr1_1 exon 7409238 7409323 7409238 ID=Msa0004970-mRNA-1:exon:2639;Parent=Msa0004970-mRNA-1
chr1_1 exon 7409824 7409980 7409824 ID=Msa0004970-mRNA-1:exon:2638;Parent=Msa0004970-mRNA-1
chr1_1 exon 7410164 7410328 7410164 ID=Msa0004970-mRNA-1:exon:2637;Parent=Msa0004970-mRNA-1
chr1_1 exon 7411567 7411920 7411567 ID=Msa0004970-mRNA-1:exon:2636;Parent=Msa0004970-mRNA-1
chr1_1 five_prime_UTR 7411792 7411920 7411792 ID=Msa0004970-mRNA-1:five_prime_utr;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7411567 7411791 7411567 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7410164 7410328 7410164 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7409824 7409980 7409824 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7409238 7409323 7409238 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7408830 7409029 7408830 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7408174 7408423 7408174 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7407809 7408015 7407809 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 CDS 7407433 7407615 7407433 ID=Msa0004970-mRNA-1:cds;Parent=Msa0004970-mRNA-1
chr1_1 three_prime_UTR 7406635 7407432 7406635 ID=Msa0004970-mRNA-1:three_prime_utr;Parent=Msa0004970-mRNA-1
Gene Sequence

>Msa0004970

ATGGACTTTTCTCAATTTTCCACTATCCTCTTTCTCACCGTCATCTTGAACATCCTTGCTGCTGTCTCCGGTAGCCGTGACCTCCCCGGAGATTATATCCGATTGCCATCTCAATCTCAAGCCTCCAGGTTCTTCCATGAGCCTGAAAATGATGACAACGTTGAAGGGACTAGGTGGGCTATTTTACTTGCTGGTTCTAATGGTTATTGGAATTATAGGCATCAGGCTGATGTTTGTCATGCGTATCAATTATTGAGGAATGGTGGCTTGAAAGAAGAAAACATTATTGTTTTCATGTATGATGATATTGCTTCCAATGTAGAGAATCCAAGGCCTGGAGTCATAATTAACAAACCTGATGGTGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGTGCAGAGGTACATGCTGACAATTTCTATGCTGCTTTACTTGGAAATAAATCAGCTCTTACAGGTGGGAGTGGGAAAGTTGTTGATAGTGGCCCAAATGATCATATTTTTGTATACTACACTGATCATGGAGGTCCAGGGGTTCTTGGTATGCCAGTTGGTCCTTACTTGTATGCATCTGATCTGAATGAAGTCTTGAAGAAAAAACATGCTTCTGGATCATATAAGAGCCTAGTATTTTATCTGGAGGCATGTGAATCTGGCAGTATCTTTGAAGGTCTTCTTCCAGAAGATATCAATATCTACGCGACAACGGCTTCAAATGCAGTAGAAAGCAGTTGGGGAACATATTGCCCTGGGGAGTACCCTCCCCCTCCTCCAGAGTACTCAACTTGCTTAGGTGACCTATACAGCATTGCTTGGATGGAAGACAGGAGTTTGGTAATTGATGTCTTATTTGCTAATGTGGTGCAGGTTAAGGATAGGACTATCAATGGTTACTATGGTTCTCATGTGATGGAGTATGGTGATGTAGGGCTTAGCAACAATCATCTCTTCCTATATTTGGGTACAAATCCTGCCAATGACAATATTAGTTTTGTGGATGAAAGCTCCTTGAAATTGAGATCACCTTCAACAGCAGTTAACCAAAGGGATGCTGATCTCATTCATTTCTGGGATAAGTTCCGCAAAGCACCTGAGGGTTCTCCGCGGAAAAATGAAGCACAAAAGGAAGTTTTGGAAGCAATGTCTCACAGGATGCATGTAGACAACAGTGTGAAACTGATTGGAAAGCTCTTATTTGGCATTGAAAAGGGTACTGAAATGCTCGACAATGTTAGACCTGCTGGATCACCACTTGTTGACAACTGGGATTGCCTCAAAACCATGGTGAAGACTTTTGAGACACATTGTGGATCTCTATCTCAGTATGGTATGAAACATATGAGGTCCTTTGCGAACATCTGCAATGCAGGAATACAAACCGAGCAAATGGCCGAGGCCTCAGCACAAGCTTGTACCAGTATTCCTCCCAACCCTTGGAGTTCTCTACAAAGGGGTTTCAGTGCATAG
Protein sequence

>Msa0004970

MDFSQFSTILFLTVILNILAAVSGSRDLPGDYIRLPSQSQASRFFHEPENDDNVEGTRWAILLAGSNGYWNYRHQADVCHAYQLLRNGGLKEENIIVFMYDDIASNVENPRPGVIINKPDGGDVYEGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGSYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAVESSWGTYCPGEYPPPPPEYSTCLGDLYSIAWMEDRSLVIDVLFANVVQVKDRTINGYYGSHVMEYGDVGLSNNHLFLYLGTNPANDNISFVDESSLKLRSPSTAVNQRDADLIHFWDKFRKAPEGSPRKNEAQKEVLEAMSHRMHVDNSVKLIGKLLFGIEKGTEMLDNVRPAGSPLVDNWDCLKTMVKTFETHCGSLSQYGMKHMRSFANICNAGIQTEQMAEASAQACTSIPPNPWSSLQRGFSA*