AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053020 MtrunA17_Chr1g0151801 95.132 493 21 1 1 490 1 493 0.0 941
Msa0053020 MtrunA17_Chr3g0135491 72.617 493 121 6 3 490 1 484 0.0 742
Msa0053020 MtrunA17_Chr4g0056561 57.942 447 172 6 33 473 41 477 0.0 528
Msa0053020 MtrunA17_Chr7g0248651 50.905 442 202 5 46 476 35 472 2.04e-151 440
Msa0053020 MtrunA17_Chr7g0246051 57.511 233 99 0 46 278 34 266 2.21e-94 287
Msa0053020 MtrunA17_Chr7g0226421 65.909 132 45 0 52 183 28 159 1.70e-58 190
Msa0053020 MtrunA17_Chr7g0226441 47.895 190 87 2 292 473 13 198 2.80e-53 178
Msa0053020 MtrunA17_Chr7g0246061 40.722 194 108 4 285 476 1 189 1.37e-36 133
Msa0053020 MtrunA17_Chr7g0226431 69.014 71 22 0 215 285 1 71 1.60e-28 108
Msa0053020 MtrunA17_Chr2g0307771 30.409 171 116 3 59 227 44 213 1.65e-21 96.7
Msa0053020 MtrunA17_Chr1g0193781 28.488 172 118 4 59 227 34 203 2.42e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053020 AT4G32940.1 72.611 471 119 6 26 490 28 494 0.0 693
Msa0053020 AT2G25940.1 68.916 489 134 7 7 490 3 478 0.0 677
Msa0053020 AT1G62710.1 60.093 431 161 5 49 473 42 467 0.0 533
Msa0053020 AT3G20210.1 52.681 429 198 3 50 474 38 465 1.30e-152 443
Msa0053020 AT1G08750.3 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0053020 AT1G08750.2 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0053020 AT1G08750.1 29.050 179 124 3 51 227 20 197 9.55e-22 97.4

Find 176 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATCTCTTCCTATATT+TGG 0.063831 1_2:-7430431 Msa0053020:CDS
GAGCTCAATTACTATGATTT+TGG 0.156079 1_2:+7429363 None:intergenic
ATGCTGATCTCATTCATTTC+TGG 0.156966 1_2:-7430321 Msa0053020:CDS
CTGATTGGAAAGCTCTTATT+TGG 0.175472 1_2:-7430035 Msa0053020:CDS
TTGCTGGTTCTAATGGTTAT+TGG 0.191155 1_2:-7433681 Msa0053020:CDS
CTAATGGTTATTGGAATTAT+AGG 0.241588 1_2:-7433672 Msa0053020:CDS
AAAATAATTTCAAGGGATTA+TGG 0.245835 1_2:-7429221 Msa0053020:three_prime_UTR
ATGATGATGCTGTATATATT+TGG 0.250928 1_2:-7428988 Msa0053020:three_prime_UTR
GGAAATAAATCAGCTCTTAC+AGG 0.282325 1_2:-7432051 Msa0053020:CDS
GACCTTGTTCCCTATCATAT+TGG 0.296528 1_2:+7429147 None:intergenic
AATTTCTATGCTGCTTTACT+TGG 0.313296 1_2:-7432072 Msa0053020:CDS
GATCACCACTTGTTGACAAC+TGG 0.329432 1_2:-7429968 Msa0053020:CDS
TAATAGTGTAAGTAGGTAAT+TGG 0.333430 1_2:-7429109 Msa0053020:three_prime_UTR
TATCTGGAGGCATGTGAATC+TGG 0.334996 1_2:-7431142 Msa0053020:CDS
CATGGAGGTCCAGGGGTTCT+TGG 0.340017 1_2:-7431967 Msa0053020:intron
AATCATCTCTTCCTATATTT+GGG 0.340373 1_2:-7430430 Msa0053020:CDS
GGGATTATGGCATTTATAAC+TGG 0.343812 1_2:-7429208 Msa0053020:three_prime_UTR
CATTCTCCTTCCTTCAATCA+TGG 0.352942 1_2:-7433887 Msa0053020:exon
TGCTAATGTGGTGCAGGTTA+AGG 0.359305 1_2:-7430518 Msa0053020:CDS
TGCTGATCTCATTCATTTCT+GGG 0.362031 1_2:-7430320 Msa0053020:CDS
AGAGAAGATTTAAATAATAA+AGG 0.366081 1_2:+7433931 None:intergenic
CATGATTCTGTAAATACAAT+TGG 0.366402 1_2:-7429450 Msa0053020:three_prime_UTR
CAGGATTTGTACCCAAATAT+AGG 0.367367 1_2:+7430419 None:intergenic
CCAAGGGTTGGGAGGAATAC+TGG 0.377257 1_2:+7429604 None:intergenic
GGTTCTCATGTGATGGAGTA+TGG 0.388016 1_2:-7430472 Msa0053020:CDS
GCTCTTATTTGGCATTGAAA+AGG 0.393897 1_2:-7430024 Msa0053020:CDS
TCTCATTCATTTCTGGGATA+AGG 0.394878 1_2:-7430314 Msa0053020:intron
GCGTAGATATTGATATCTTC+TGG 0.396831 1_2:+7431097 None:intergenic
CCCTTGGAGTTCTCTGCAAA+GGG 0.400932 1_2:-7429588 Msa0053020:CDS
TTACACTTAATACAAATTGT+TGG 0.402400 1_2:+7428793 None:intergenic
AGGACTATCAATGGTTACTA+TGG 0.412584 1_2:-7430493 Msa0053020:CDS
TGGAACACTACTAGGACATT+GGG 0.413330 1_2:-7429430 Msa0053020:three_prime_UTR
CTCGACAATGTTAGACCTGC+TGG 0.413552 1_2:-7429990 Msa0053020:CDS
TTTGTATACTACACTGATCA+TGG 0.415438 1_2:-7431985 Msa0053020:CDS
TCCGGGGAGGTCACGGCTAC+CGG 0.417671 1_2:+7433801 None:intergenic
CCATCCAAGCAATGCTGTAT+AGG 0.421967 1_2:+7430978 None:intergenic
TAACAGCATAATTATGTTGT+TGG 0.428144 1_2:+7428844 None:intergenic
TGCAGAGAACTCCAAGGGTT+GGG 0.429995 1_2:+7429593 None:intergenic
TGTTAGTCTTTATAGTTAGT+TGG 0.433025 1_2:-7428954 Msa0053020:three_prime_UTR
TGTGGATCTCTATCTCAGTA+TGG 0.435172 1_2:-7429713 Msa0053020:CDS
CACAAAACTAATATTGTCAT+TGG 0.435815 1_2:+7430396 None:intergenic
TTAATTATGACTCCAGGCCT+TGG 0.438134 1_2:+7432348 None:intergenic
AACATCCTTGCTGCTGTCTC+CGG 0.438904 1_2:-7433820 Msa0053020:CDS
CTCTTATTTGGCATTGAAAA+GGG 0.444223 1_2:-7430023 Msa0053020:CDS
AATACAATTGGAACACTACT+AGG 0.446735 1_2:-7429438 Msa0053020:three_prime_UTR
CTACTAGGACATTGGGGAGT+AGG 0.452123 1_2:-7429423 Msa0053020:three_prime_UTR
TGAGGCCTCGGCCATTTGCT+CGG 0.452146 1_2:+7429640 None:intergenic
CCTATACAGCATTGCTTGGA+TGG 0.453083 1_2:-7430978 Msa0053020:CDS
GTCTCTTCAGGTATGCCAGT+TGG 0.457359 1_2:-7431452 Msa0053020:intron
TACACTGATCATGGAGGTCC+AGG 0.458300 1_2:-7431976 Msa0053020:CDS
GACGGTGAGAAAGAGGATAG+TGG 0.460059 1_2:+7433849 None:intergenic
ACAAGCTTGTGCTGAGGCCT+CGG 0.460376 1_2:+7429628 None:intergenic
TGAAGGTGATCTCAATTTCA+AGG 0.461933 1_2:+7430363 None:intergenic
GTCATGCGTATCAATTATTG+AGG 0.462318 1_2:-7432440 Msa0053020:CDS
CATATTGGACATTCCACAAC+AGG 0.464539 1_2:+7429162 None:intergenic
TACTAGGACATTGGGGAGTA+GGG 0.467212 1_2:-7429422 Msa0053020:three_prime_UTR
TTGGAACACTACTAGGACAT+TGG 0.467994 1_2:-7429431 Msa0053020:three_prime_UTR
AATTCTGTTGCAAAGTGTCT+AGG 0.469631 1_2:+7429072 None:intergenic
CTTATTTGCTAATGTGGTGC+AGG 0.471890 1_2:-7430524 Msa0053020:CDS
CTTTGGTTAACTGCTGTTGA+AGG 0.474696 1_2:+7430346 None:intergenic
TGTGGAATGTCCAATATGAT+AGG 0.476129 1_2:-7429157 Msa0053020:three_prime_UTR
TGGCAATCGGATATAATCTC+CGG 0.476800 1_2:+7433783 None:intergenic
CATCTCAATCTCAAGCCTCC+AGG 0.478973 1_2:-7433762 Msa0053020:CDS
AAACTAATATTGTCATTGGC+AGG 0.480772 1_2:+7430400 None:intergenic
GAATGAGATCAGCATCCCTT+TGG 0.480791 1_2:+7430329 None:intergenic
CCAGAGTACTCAACTTGCTT+AGG 0.481337 1_2:-7431004 Msa0053020:CDS
GCATACAAGTAAGGACCAAC+TGG 0.486355 1_2:+7431437 None:intergenic
TTTGCGAACATCTGCAATGC+AGG 0.487663 1_2:-7429671 Msa0053020:CDS
TTATTGGAATTATAGGCATC+AGG 0.488640 1_2:-7433665 Msa0053020:intron
GAAAATGATGACAACGTTGA+AGG 0.488978 1_2:-7433724 Msa0053020:CDS
TGATCTCTACTTGATATTGT+GGG 0.489618 1_2:-7429316 Msa0053020:three_prime_UTR
TAAGTAGGTAATTGGCAGAC+AGG 0.492905 1_2:-7429101 Msa0053020:three_prime_UTR
TGATGTCTTATTTGCTAATG+TGG 0.492908 1_2:-7430530 Msa0053020:CDS
ATGATCTCTACTTGATATTG+TGG 0.495704 1_2:-7429317 Msa0053020:three_prime_UTR
TCATAAACATCACCACCATC+AGG 0.496461 1_2:+7432321 None:intergenic
AGGAATACAAACCGAGCAAA+TGG 0.496796 1_2:-7429651 Msa0053020:CDS
GTTGAGTACTCTGGAGGAGG+GGG 0.498780 1_2:+7431013 None:intergenic
GTGACCTATACAGCATTGCT+TGG 0.499223 1_2:-7430982 Msa0053020:CDS
TGAGAAAAGTCCATGATTGA+AGG 0.499589 1_2:+7433877 None:intergenic
AGATCAGATGCATACAAGTA+AGG 0.499897 1_2:+7431428 None:intergenic
AAATGCAGTAGAAAGCAGTT+GGG 0.502368 1_2:-7431062 Msa0053020:CDS
ATCACCACTTGTTGACAACT+GGG 0.503223 1_2:-7429967 Msa0053020:CDS
GTGATGGAGTATGGTGATGT+AGG 0.504095 1_2:-7430463 Msa0053020:CDS
CAAATGCAGTAGAAAGCAGT+TGG 0.506782 1_2:-7431063 Msa0053020:CDS
TTGCAGAGAACTCCAAGGGT+TGG 0.506910 1_2:+7429592 None:intergenic
GACAACAGTGTGAAACTGAT+TGG 0.509576 1_2:-7430050 Msa0053020:CDS
CCAGTATTCCTCCCAACCCT+TGG 0.511464 1_2:-7429604 Msa0053020:CDS
GAATCTGGCAGTATCTTTGA+AGG 0.512925 1_2:-7431127 Msa0053020:CDS
GCATTGCTTGGATGGAAGAC+AGG 0.514105 1_2:-7430970 Msa0053020:intron
GGTTTGTTAATTATGACTCC+AGG 0.517005 1_2:+7432342 None:intergenic
GGCAATCGGATATAATCTCC+GGG 0.519142 1_2:+7433784 None:intergenic
GAGAACCCTCAGGTGCTTTG+CGG 0.521251 1_2:+7430132 None:intergenic
TATAATCTCCGGGGAGGTCA+CGG 0.522714 1_2:+7433794 None:intergenic
ACCCTTGGAGTTCTCTGCAA+AGG 0.523617 1_2:-7429589 Msa0053020:CDS
ACATACTTGTTTGTGACAAG+AGG 0.524150 1_2:+7429291 None:intergenic
AGTTGGGGAACATATTGCCC+TGG 0.526331 1_2:-7431046 Msa0053020:CDS
CTTGAGATTGAGATGGCAAT+CGG 0.526844 1_2:+7433770 None:intergenic
TTCAGGCTCATGGAAGAACC+TGG 0.531469 1_2:+7433744 None:intergenic
AATACAACCCTATCACTGAA+TGG 0.531549 1_2:+7429253 None:intergenic
TCAGCTCTTACAGGTGGGAG+TGG 0.533587 1_2:-7432042 Msa0053020:CDS
GACCACAGTTCTGCCTGTTG+TGG 0.539312 1_2:-7429175 Msa0053020:three_prime_UTR
CAAGTTGAGTACTCTGGAGG+AGG 0.540236 1_2:+7431010 None:intergenic
TCCGGTAGCCGTGACCTCCC+CGG 0.541628 1_2:-7433802 Msa0053020:CDS
AATGTAGAGAATCCAAGGCC+TGG 0.541898 1_2:-7432360 Msa0053020:CDS
AAAATGATGACAACGTTGAA+GGG 0.542555 1_2:-7433723 Msa0053020:CDS
CCTAAGCAAGTTGAGTACTC+TGG 0.544668 1_2:+7431004 None:intergenic
GTTGGGGAACATATTGCCCT+GGG 0.545583 1_2:-7431045 Msa0053020:CDS
GTTGCAGTGGCGTATGAAGT+TGG 0.550472 1_2:+7433963 None:intergenic
ATTCTGTTGCAAAGTGTCTA+GGG 0.556510 1_2:+7429073 None:intergenic
TCAAGATGACGGTGAGAAAG+AGG 0.557472 1_2:+7433842 None:intergenic
AGTTGAGTACTCTGGAGGAG+GGG 0.559521 1_2:+7431012 None:intergenic
GTTAAGGATAGGACTATCAA+TGG 0.561264 1_2:-7430502 Msa0053020:CDS
AGGCCTTGGATTCTCTACAT+TGG 0.562654 1_2:+7432362 None:intergenic
AGTGGGAAAGTTGTTGATAG+TGG 0.565083 1_2:-7432024 Msa0053020:CDS
GCGTATCAATTATTGAGGAA+TGG 0.567662 1_2:-7432435 Msa0053020:CDS
AGGAGAATGAATGAGTGAAG+AGG 0.569468 1_2:+7433901 None:intergenic
TTCTTATGACAGGATTACAC+TGG 0.570349 1_2:-7432114 Msa0053020:intron
AGCAAGGATGTTCAAGATGA+CGG 0.570580 1_2:+7433831 None:intergenic
GTCATAATTAACAAACCTGA+TGG 0.573212 1_2:-7432336 Msa0053020:CDS
AATTACTCACCAAGAACCCC+TGG 0.573730 1_2:+7431958 None:intergenic
ATTATGGCATTTATAACTGG+AGG 0.576560 1_2:-7429205 Msa0053020:three_prime_UTR
GCAGTTCCGCAAAGCACCTG+AGG 0.577006 1_2:-7430138 Msa0053020:intron
TTCAACAGCAGTTAACCAAA+GGG 0.582658 1_2:-7430344 Msa0053020:CDS
AAGTTGAGTACTCTGGAGGA+GGG 0.582976 1_2:+7431011 None:intergenic
TCAACAAGTGGTGATCCAGC+AGG 0.583241 1_2:+7429975 None:intergenic
ATGTGGTGCAGGTTAAGGAT+AGG 0.583690 1_2:-7430513 Msa0053020:CDS
CTTCCAATGTAGAGAATCCA+AGG 0.584961 1_2:-7432365 Msa0053020:CDS
ACAAACCGAGCAAATGGCCG+AGG 0.586423 1_2:-7429645 Msa0053020:CDS
TTACTATGGTTCTCATGTGA+TGG 0.587089 1_2:-7430479 Msa0053020:CDS
AATAAATCAGCTCTTACAGG+TGG 0.589532 1_2:-7432048 Msa0053020:CDS
AAAAGTCCATGATTGAAGGA+AGG 0.592337 1_2:+7433881 None:intergenic
TGATGGAGTATGGTGATGTA+GGG 0.594785 1_2:-7430462 Msa0053020:CDS
ACACTGATCATGGAGGTCCA+GGG 0.595033 1_2:-7431975 Msa0053020:CDS
TGCATTGCAGATGTTCGCAA+AGG 0.599606 1_2:+7429673 None:intergenic
CCCTTTGCAGAGAACTCCAA+GGG 0.601430 1_2:+7429588 None:intergenic
CAAAGGCTTTAATATGTCAC+CGG 0.602462 1_2:+7429391 None:intergenic
AGTATGGTATGAAACATATG+AGG 0.602512 1_2:-7429697 Msa0053020:CDS
CAGCTCTTACAGGTGGGAGT+GGG 0.602741 1_2:-7432041 Msa0053020:CDS
CAGTTCCGCAAAGCACCTGA+GGG 0.606664 1_2:-7430137 Msa0053020:CDS
CAATCCCAGTTGTCAACAAG+TGG 0.612244 1_2:+7429963 None:intergenic
CTGGAGGCTTGAGATTGAGA+TGG 0.612586 1_2:+7433763 None:intergenic
TATCAATTATTGAGGAATGG+TGG 0.612607 1_2:-7432432 Msa0053020:CDS
CCCCTTTGCAGAGAACTCCA+AGG 0.617909 1_2:+7429587 None:intergenic
ATGACAACGTTGAAGGGACT+AGG 0.618129 1_2:-7433717 Msa0053020:CDS
GTCCAATATGATAGGGAACA+AGG 0.619802 1_2:-7429149 Msa0053020:three_prime_UTR
CACTGATCATGGAGGTCCAG+GGG 0.620699 1_2:-7431974 Msa0053020:CDS
GATCTCTACTTGATATTGTG+GGG 0.621074 1_2:-7429315 Msa0053020:three_prime_UTR
CTTCAACAGCAGTTAACCAA+AGG 0.621499 1_2:-7430345 Msa0053020:CDS
ATTTAAATAATAAAGGTGAG+AGG 0.628502 1_2:+7433938 None:intergenic
TTGTGTGTAATAGTGTAAGT+AGG 0.633094 1_2:-7429116 Msa0053020:three_prime_UTR
TGTTTATGAAGGAGTTCCAA+AGG 0.634134 1_2:-7432307 Msa0053020:intron
CCTTGGAGTTCTCTGCAAAG+GGG 0.636445 1_2:-7429587 Msa0053020:CDS
CTGGGATTGCCTCAAAACCA+TGG 0.636860 1_2:-7429949 Msa0053020:intron
ACAACGTTGAAGGGACTAGG+TGG 0.636966 1_2:-7433714 Msa0053020:CDS
ATAAATCAGCTCTTACAGGT+GGG 0.637399 1_2:-7432047 Msa0053020:CDS
TATCAATATCTACGCGACAA+CGG 0.638805 1_2:-7431089 Msa0053020:CDS
AGAGAACTCCAAGGGTTGGG+AGG 0.639144 1_2:+7429596 None:intergenic
GATGGTGGTGATGTTTATGA+AGG 0.641773 1_2:-7432318 Msa0053020:CDS
GTGGAATGTCCAATATGATA+GGG 0.649089 1_2:-7429156 Msa0053020:three_prime_UTR
AAGGTGAGAGGTAGTTGCAG+TGG 0.649923 1_2:+7433950 None:intergenic
ATAATTAACAAACCTGATGG+TGG 0.650511 1_2:-7432333 Msa0053020:CDS
TTATGGCATTTATAACTGGA+GGG 0.650588 1_2:-7429204 Msa0053020:three_prime_UTR
CAACGTTGAAGGGACTAGGT+GGG 0.651451 1_2:-7433713 Msa0053020:CDS
ACAGGATTACACTGGTGCAG+AGG 0.651826 1_2:-7432106 Msa0053020:intron
AATGCAGTAGAAAGCAGTTG+GGG 0.656559 1_2:-7431061 Msa0053020:CDS
AAGCAAGTTGAGTACTCTGG+AGG 0.665445 1_2:+7431007 None:intergenic
ATCGGATATAATCTCCGGGG+AGG 0.681142 1_2:+7433788 None:intergenic
ACTGGTACAAGCTTGTGCTG+AGG 0.694000 1_2:+7429622 None:intergenic
GGAACACTACTAGGACATTG+GGG 0.694977 1_2:-7429429 Msa0053020:three_prime_UTR
AGGCTCATGGAAGAACCTGG+AGG 0.700785 1_2:+7433747 None:intergenic
TTCCACAACAGGCAGAACTG+TGG 0.706328 1_2:+7429173 None:intergenic
GGCTACCGGAGACAGCAGCA+AGG 0.718393 1_2:+7433815 None:intergenic
GTATACTACACTGATCATGG+AGG 0.754047 1_2:-7431982 Msa0053020:CDS
AAGCACCTGAGGGTTCTCCG+CGG 0.755716 1_2:-7430127 Msa0053020:CDS
TTGGGGAACATATTGCCCTG+GGG 0.755738 1_2:-7431044 Msa0053020:CDS
GCAATCGGATATAATCTCCG+GGG 0.767916 1_2:+7433785 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATAAACTTTTTTTTAA+AGG - chr1_2:7429164-7429183 Msa0053020:three_prime_UTR 10.0%
!! TATTTATTTGTCTATTTAAT+TGG + chr1_2:7429255-7429274 None:intergenic 10.0%
!! TAAAAAAAAAAAAAAACTCA+AGG + chr1_2:7429405-7429424 None:intergenic 10.0%
!! TATTTCAAAATTGTATTTAT+TGG - chr1_2:7431224-7431243 Msa0053020:intron 10.0%
!!! ATACTAAAATAATTTTACAA+AGG + chr1_2:7433734-7433753 None:intergenic 10.0%
!! AGAGAAGATTTAAATAATAA+AGG + chr1_2:7428846-7428865 None:intergenic 15.0%
!!! CAAATAAATACTTTTTTTGA+AGG - chr1_2:7429265-7429284 Msa0053020:three_prime_UTR 15.0%
!! TTTATAAAAACTCAAGTATT+TGG + chr1_2:7429831-7429850 None:intergenic 15.0%
!! ATACAAAAATATGATCATTT+GGG + chr1_2:7430776-7430795 None:intergenic 15.0%
!! TATACAAAAATATGATCATT+TGG + chr1_2:7430777-7430796 None:intergenic 15.0%
!!! AGTTTGTTTTTTATTGTATT+AGG - chr1_2:7432210-7432229 Msa0053020:intron 15.0%
!! GACTTTACATTAAAAAAATA+TGG - chr1_2:7432970-7432989 Msa0053020:intron 15.0%
!! TTAGAAAAATTAAGCTAAAA+AGG + chr1_2:7433868-7433887 None:intergenic 15.0%
!! ATTTAAATAATAAAGGTGAG+AGG + chr1_2:7428839-7428858 None:intergenic 20.0%
!!! ATGATTTTACCTATTTATGT+TGG + chr1_2:7429314-7429333 None:intergenic 20.0%
!!! ATCTGAGTTTTTATTTTTGT+CGG - chr1_2:7429434-7429453 Msa0053020:three_prime_UTR 20.0%
!!! GTTATCACTTGATTTTAATT+TGG - chr1_2:7429522-7429541 Msa0053020:three_prime_UTR 20.0%
!!! ACATTTTCATTAATCTGTAT+TGG + chr1_2:7429621-7429640 None:intergenic 20.0%
!!! ACTTATAATTTAAAGTCAAC+TGG - chr1_2:7430055-7430074 Msa0053020:CDS 20.0%
!!! ACATTCAACTATTTTCATTT+TGG + chr1_2:7430116-7430135 None:intergenic 20.0%
!! AATGAAAATAGTTGAATGTA+TGG - chr1_2:7430117-7430136 Msa0053020:CDS 20.0%
!! ATGAAAATAGTTGAATGTAT+GGG - chr1_2:7430118-7430137 Msa0053020:CDS 20.0%
!! TTGAAAAACAATTTATGTAC+AGG - chr1_2:7430148-7430167 Msa0053020:intron 20.0%
!! TGAAAAACAATTTATGTACA+GGG - chr1_2:7430149-7430168 Msa0053020:intron 20.0%
!! TTGAATATTATCACATGTAT+CGG + chr1_2:7430979-7430998 None:intergenic 20.0%
!! GAAATAATTAAATCCAAACA+TGG + chr1_2:7431491-7431510 None:intergenic 20.0%
!! TGTTTGGATTTAATTATTTC+AGG - chr1_2:7431491-7431510 Msa0053020:intron 20.0%
!!! AATTTTTTCGACTTATGTAA+TGG - chr1_2:7431595-7431614 Msa0053020:intron 20.0%
!!! TTTTTATTGTATTAGGAGTT+TGG - chr1_2:7432217-7432236 Msa0053020:intron 20.0%
!! TTGCAAGAAAAATAATTTCA+AGG - chr1_2:7433545-7433564 Msa0053020:intron 20.0%
!! TGCAAGAAAAATAATTTCAA+GGG - chr1_2:7433546-7433565 Msa0053020:intron 20.0%
!! AAAATAATTTCAAGGGATTA+TGG - chr1_2:7433553-7433572 Msa0053020:intron 20.0%
!! TTACACTTAATACAAATTGT+TGG + chr1_2:7433984-7434003 None:intergenic 20.0%
! CTAATGGTTATTGGAATTAT+AGG - chr1_2:7429102-7429121 Msa0053020:three_prime_UTR 25.0%
!! CTTTAGAAACCAACATAAAT+AGG - chr1_2:7429302-7429321 Msa0053020:three_prime_UTR 25.0%
! AAATCATGAAGTGATTTGAT+TGG - chr1_2:7429327-7429346 Msa0053020:three_prime_UTR 25.0%
!!! TCTGAGTTTTTATTTTTGTC+GGG - chr1_2:7429435-7429454 Msa0053020:three_prime_UTR 25.0%
! ATAAACTAATAACACAAGTC+TGG - chr1_2:7429500-7429519 Msa0053020:three_prime_UTR 25.0%
!!! CTGATATACATGACTTTTTT+TGG + chr1_2:7429672-7429691 None:intergenic 25.0%
! AAACATGTTGATACAATCTT+TGG + chr1_2:7429744-7429763 None:intergenic 25.0%
! TGAAAATAGTTGAATGTATG+GGG - chr1_2:7430119-7430138 Msa0053020:CDS 25.0%
! ATTTATGTACAGGGATTAAA+TGG - chr1_2:7430158-7430177 Msa0053020:intron 25.0%
! AGATAATGTTGAATTTCAGA+AGG - chr1_2:7430195-7430214 Msa0053020:intron 25.0%
!! ACTAAAATTGACTTTACCTT+TGG + chr1_2:7430486-7430505 None:intergenic 25.0%
! AGCTATTGAATGTAACAATA+TGG + chr1_2:7430568-7430587 None:intergenic 25.0%
!! AAACTTTTTGATGAAAGACA+TGG - chr1_2:7430857-7430876 Msa0053020:intron 25.0%
! TAAGTTGTTTGTATGTGTTT+AGG - chr1_2:7431070-7431089 Msa0053020:CDS 25.0%
! ACAATAAACACACTATTTGT+CGG + chr1_2:7431131-7431150 None:intergenic 25.0%
!! TTTGATTGAATTGTGTTTTG+TGG - chr1_2:7431159-7431178 Msa0053020:intron 25.0%
!! TATTTCATTCCAACTGTTTT+TGG + chr1_2:7431206-7431225 None:intergenic 25.0%
!! GTTCCTTTCTATTTCTTATT+TGG - chr1_2:7431300-7431319 Msa0053020:intron 25.0%
! AGACCAAATAAGAAATAGAA+AGG + chr1_2:7431306-7431325 None:intergenic 25.0%
! AACTTACCAATTTATATTGC+TGG + chr1_2:7432079-7432098 None:intergenic 25.0%
! AATATGTGATTAAGCATTCA+AGG + chr1_2:7432181-7432200 None:intergenic 25.0%
! AATCATCTCTTCCTATATTT+GGG - chr1_2:7432344-7432363 Msa0053020:CDS 25.0%
! CACAAAACTAATATTGTCAT+TGG + chr1_2:7432381-7432400 None:intergenic 25.0%
!!! CAATGACAATATTAGTTTTG+TGG - chr1_2:7432379-7432398 Msa0053020:CDS 25.0%
! TTACGTTTAATTGAAATGCA+CGG + chr1_2:7432534-7432553 None:intergenic 25.0%
!! AACCAGATATTGAGTATTTT+TGG - chr1_2:7432604-7432623 Msa0053020:intron 25.0%
! TGAACAAAAAAAGCAGATTA+AGG + chr1_2:7433019-7433038 None:intergenic 25.0%
!!! TTAATCTGCTTTTTTTGTTC+AGG - chr1_2:7433018-7433037 Msa0053020:intron 25.0%
!! TTTTACAAAGTGCACATTTT+AGG + chr1_2:7433228-7433247 None:intergenic 25.0%
! CATGATTCTGTAAATACAAT+TGG - chr1_2:7433324-7433343 Msa0053020:intron 25.0%
!! TCTCAATTTCTTTTGATAGA+TGG - chr1_2:7433432-7433451 Msa0053020:intron 25.0%
!! TTTTTAATCCATTCAGTGAT+AGG - chr1_2:7433513-7433532 Msa0053020:intron 25.0%
!! TTTTAATCCATTCAGTGATA+GGG - chr1_2:7433514-7433533 Msa0053020:intron 25.0%
! TAATAGTGTAAGTAGGTAAT+TGG - chr1_2:7433665-7433684 Msa0053020:intron 25.0%
!! ATGATGATGCTGTATATATT+TGG - chr1_2:7433786-7433805 Msa0053020:CDS 25.0%
!!! TGTTAGTCTTTATAGTTAGT+TGG - chr1_2:7433820-7433839 Msa0053020:CDS 25.0%
! TAACAGCATAATTATGTTGT+TGG + chr1_2:7433933-7433952 None:intergenic 25.0%
AAAATGATGACAACGTTGAA+GGG - chr1_2:7429051-7429070 Msa0053020:three_prime_UTR 30.0%
!!! ATTTTACTTGCTGGTTCTAA+TGG - chr1_2:7429086-7429105 Msa0053020:three_prime_UTR 30.0%
TTATTGGAATTATAGGCATC+AGG - chr1_2:7429109-7429128 Msa0053020:three_prime_UTR 30.0%
AGTAACATCATCAAAGACAA+AGG + chr1_2:7429376-7429395 None:intergenic 30.0%
!!! CTGAGTTTTTATTTTTGTCG+GGG - chr1_2:7429436-7429455 Msa0053020:three_prime_UTR 30.0%
AATTTGGTCTCTATCAGAAT+TGG - chr1_2:7429538-7429557 Msa0053020:three_prime_UTR 30.0%
CGTATATGTTTCACATTCAT+TGG - chr1_2:7429708-7429727 Msa0053020:CDS 30.0%
TTGACTAATCCTAATCTGAA+GGG + chr1_2:7429800-7429819 None:intergenic 30.0%
ATTGACTAATCCTAATCTGA+AGG + chr1_2:7429801-7429820 None:intergenic 30.0%
TATCAATTATTGAGGAATGG+TGG - chr1_2:7430342-7430361 Msa0053020:CDS 30.0%
GTCATAATTAACAAACCTGA+TGG - chr1_2:7430438-7430457 Msa0053020:CDS 30.0%
ATAATTAACAAACCTGATGG+TGG - chr1_2:7430441-7430460 Msa0053020:CDS 30.0%
!! TAAGAGCTTTTTCTTATGAC+AGG - chr1_2:7430650-7430669 Msa0053020:intron 30.0%
!! AATTTCTATGCTGCTTTACT+TGG - chr1_2:7430702-7430721 Msa0053020:intron 30.0%
TTTGTATACTACACTGATCA+TGG - chr1_2:7430789-7430808 Msa0053020:intron 30.0%
TAACACTAACATATCGACAT+TGG + chr1_2:7431026-7431045 None:intergenic 30.0%
CACAATAAACCAAAAACAGT+TGG - chr1_2:7431194-7431213 Msa0053020:intron 30.0%
! ATTTCTTATTTGGTCTCTTC+AGG - chr1_2:7431310-7431329 Msa0053020:intron 30.0%
TTGAAGAAAAAACATGCTTC+TGG - chr1_2:7431379-7431398 Msa0053020:CDS 30.0%
ACTATTACTAGTGACTTACT+AGG + chr1_2:7431417-7431436 None:intergenic 30.0%
! AGCTTGCATAATAAACCTTT+TGG - chr1_2:7431535-7431554 Msa0053020:intron 30.0%
!! TTAGTTTGTCTTCAACCAAA+AGG + chr1_2:7431553-7431572 None:intergenic 30.0%
TTATAACCATACAATCACCA+TGG - chr1_2:7431886-7431905 Msa0053020:intron 30.0%
TTTGCACCAGCAATATAAAT+TGG - chr1_2:7432070-7432089 Msa0053020:CDS 30.0%
CAAGTGAGCAACAATTTATA+AGG + chr1_2:7432107-7432126 None:intergenic 30.0%
!! TGATGTCTTATTTGCTAATG+TGG - chr1_2:7432244-7432263 Msa0053020:intron 30.0%
CAATCATCTCTTCCTATATT+TGG - chr1_2:7432343-7432362 Msa0053020:CDS 30.0%
AAACTAATATTGTCATTGGC+AGG + chr1_2:7432377-7432396 None:intergenic 30.0%
AAACATCCAAATGCAATTGA+CGG - chr1_2:7432559-7432578 Msa0053020:intron 30.0%
AATACTCAATATCTGGTTAC+TGG + chr1_2:7432602-7432621 None:intergenic 30.0%
CACCAAAAATACTCAATATC+TGG + chr1_2:7432609-7432628 None:intergenic 30.0%
!!! TGAGTATTTTTGGTGTTCAT+TGG - chr1_2:7432614-7432633 Msa0053020:intron 30.0%
! TGAAGCACAAAAAGAAGTTT+TGG - chr1_2:7432675-7432694 Msa0053020:intron 30.0%
! CTCTTATTTGGCATTGAAAA+GGG - chr1_2:7432751-7432770 Msa0053020:intron 30.0%
AGTATGGTATGAAACATATG+AGG - chr1_2:7433077-7433096 Msa0053020:intron 30.0%
AATACAATTGGAACACTACT+AGG - chr1_2:7433336-7433355 Msa0053020:intron 30.0%
! CTATGATTTTGGATGAACAA+AGG + chr1_2:7433403-7433422 None:intergenic 30.0%
! GAGCTCAATTACTATGATTT+TGG + chr1_2:7433414-7433433 None:intergenic 30.0%
ATGATCTCTACTTGATATTG+TGG - chr1_2:7433457-7433476 Msa0053020:intron 30.0%
TGATCTCTACTTGATATTGT+GGG - chr1_2:7433458-7433477 Msa0053020:intron 30.0%
ATTATGGCATTTATAACTGG+AGG - chr1_2:7433569-7433588 Msa0053020:intron 30.0%
TTATGGCATTTATAACTGGA+GGG - chr1_2:7433570-7433589 Msa0053020:intron 30.0%
TTGTGTGTAATAGTGTAAGT+AGG - chr1_2:7433658-7433677 Msa0053020:intron 30.0%
AAAAGTCCATGATTGAAGGA+AGG + chr1_2:7428896-7428915 None:intergenic 35.0%
TGAGAAAAGTCCATGATTGA+AGG + chr1_2:7428900-7428919 None:intergenic 35.0%
! TCAACGTTGTCATCATTTTC+AGG + chr1_2:7429050-7429069 None:intergenic 35.0%
GAAAATGATGACAACGTTGA+AGG - chr1_2:7429050-7429069 Msa0053020:three_prime_UTR 35.0%
!! TTGCTGGTTCTAATGGTTAT+TGG - chr1_2:7429093-7429112 Msa0053020:three_prime_UTR 35.0%
!! TTTTTGTTGCTTGCTTCATC+AGG - chr1_2:7430302-7430321 Msa0053020:intron 35.0%
GTCATGCGTATCAATTATTG+AGG - chr1_2:7430334-7430353 Msa0053020:CDS 35.0%
GCGTATCAATTATTGAGGAA+TGG - chr1_2:7430339-7430358 Msa0053020:CDS 35.0%
!! GGTTTGTTAATTATGACTCC+AGG + chr1_2:7430435-7430454 None:intergenic 35.0%
TGTTTATGAAGGAGTTCCAA+AGG - chr1_2:7430467-7430486 Msa0053020:CDS 35.0%
TTCTTATGACAGGATTACAC+TGG - chr1_2:7430660-7430679 Msa0053020:intron 35.0%
GGAAATAAATCAGCTCTTAC+AGG - chr1_2:7430723-7430742 Msa0053020:intron 35.0%
AATAAATCAGCTCTTACAGG+TGG - chr1_2:7430726-7430745 Msa0053020:intron 35.0%
ATAAATCAGCTCTTACAGGT+GGG - chr1_2:7430727-7430746 Msa0053020:intron 35.0%
! ACGTCTTCAATTTGAAGTGA+CGG + chr1_2:7430919-7430938 None:intergenic 35.0%
CTTCAAATTGAAGACGTGTT+TGG - chr1_2:7430922-7430941 Msa0053020:intron 35.0%
!! TATTTTTGTTCGACACGTGT+GGG + chr1_2:7430951-7430970 None:intergenic 35.0%
!! AAAAGCTTAAGCCTTGTTTG+AGG - chr1_2:7431099-7431118 Msa0053020:CDS 35.0%
AGATCAGATGCATACAAGTA+AGG + chr1_2:7431349-7431368 None:intergenic 35.0%
GAAGAACTACACAGAACAAA+CGG + chr1_2:7431469-7431488 None:intergenic 35.0%
AAAAATTTAGTGCGCGAGTT+TGG + chr1_2:7431582-7431601 None:intergenic 35.0%
GACTTATGTAATGGTGTAAC+AGG - chr1_2:7431604-7431623 Msa0053020:intron 35.0%
! GGTGTAACAGGTATTTTATC+TGG - chr1_2:7431616-7431635 Msa0053020:intron 35.0%
! GTAACAGGTATTTTATCTGG+AGG - chr1_2:7431619-7431638 Msa0053020:intron 35.0%
GCGTAGATATTGATATCTTC+TGG + chr1_2:7431680-7431699 None:intergenic 35.0%
TATCAATATCTACGCGACAA+CGG - chr1_2:7431685-7431704 Msa0053020:intron 35.0%
AAATGCAGTAGAAAGCAGTT+GGG - chr1_2:7431712-7431731 Msa0053020:intron 35.0%
!!! CAAAGTTTTGAACTACTCCA+TGG + chr1_2:7431906-7431925 None:intergenic 35.0%
GTTAAGGATAGGACTATCAA+TGG - chr1_2:7432272-7432291 Msa0053020:intron 35.0%
AGGACTATCAATGGTTACTA+TGG - chr1_2:7432281-7432300 Msa0053020:intron 35.0%
TTACTATGGTTCTCATGTGA+TGG - chr1_2:7432295-7432314 Msa0053020:intron 35.0%
CAGGATTTGTACCCAAATAT+AGG + chr1_2:7432358-7432377 None:intergenic 35.0%
TGAAGGTGATCTCAATTTCA+AGG + chr1_2:7432414-7432433 None:intergenic 35.0%
TTCAACAGCAGTTAACCAAA+GGG - chr1_2:7432430-7432449 Msa0053020:CDS 35.0%
ATGCTGATCTCATTCATTTC+TGG - chr1_2:7432453-7432472 Msa0053020:CDS 35.0%
TGCTGATCTCATTCATTTCT+GGG - chr1_2:7432454-7432473 Msa0053020:intron 35.0%
!! TCTCATTCATTTCTGGGATA+AGG - chr1_2:7432460-7432479 Msa0053020:intron 35.0%
!! TTTTGTGCTTCATTTTTCCG+CGG + chr1_2:7432667-7432686 None:intergenic 35.0%
CTGATTGGAAAGCTCTTATT+TGG - chr1_2:7432739-7432758 Msa0053020:intron 35.0%
! GCTCTTATTTGGCATTGAAA+AGG - chr1_2:7432750-7432769 Msa0053020:intron 35.0%
AATCAAGAGAAGTAGTACCA+TGG + chr1_2:7432845-7432864 None:intergenic 35.0%
! TCAGCTTCATCTATCTTTTC+TGG - chr1_2:7432864-7432883 Msa0053020:intron 35.0%
AGTCATGCAAATTCATCACA+AGG + chr1_2:7432954-7432973 None:intergenic 35.0%
!!! AAGACTTTTGAGACACATTG+TGG - chr1_2:7433043-7433062 Msa0053020:intron 35.0%
! CAAAGGCTTTAATATGTCAC+CGG + chr1_2:7433386-7433405 None:intergenic 35.0%
GATCTCTACTTGATATTGTG+GGG - chr1_2:7433459-7433478 Msa0053020:intron 35.0%
ACATACTTGTTTGTGACAAG+AGG + chr1_2:7433486-7433505 None:intergenic 35.0%
AATACAACCCTATCACTGAA+TGG + chr1_2:7433524-7433543 None:intergenic 35.0%
GGGATTATGGCATTTATAAC+TGG - chr1_2:7433566-7433585 Msa0053020:intron 35.0%
TGTGGAATGTCCAATATGAT+AGG - chr1_2:7433617-7433636 Msa0053020:intron 35.0%
GTGGAATGTCCAATATGATA+GGG - chr1_2:7433618-7433637 Msa0053020:intron 35.0%
! ATTCTGTTGCAAAGTGTCTA+GGG + chr1_2:7433704-7433723 None:intergenic 35.0%
! AATTCTGTTGCAAAGTGTCT+AGG + chr1_2:7433705-7433724 None:intergenic 35.0%
AGGAGAATGAATGAGTGAAG+AGG + chr1_2:7428876-7428895 None:intergenic 40.0%
CATTCTCCTTCCTTCAATCA+TGG - chr1_2:7428887-7428906 Msa0053020:three_prime_UTR 40.0%
AGCAAGGATGTTCAAGATGA+CGG + chr1_2:7428946-7428965 None:intergenic 40.0%
TGGCAATCGGATATAATCTC+CGG + chr1_2:7428994-7429013 None:intergenic 40.0%
CTTGAGATTGAGATGGCAAT+CGG + chr1_2:7429007-7429026 None:intergenic 40.0%
!! TGTCATCATTTTCAGGCTCA+TGG + chr1_2:7429043-7429062 None:intergenic 40.0%
AGTGTCATGAGATAAGAGTG+AGG + chr1_2:7429598-7429617 None:intergenic 40.0%
!! GTTTTAAATACCACCGCAAG+TGG - chr1_2:7429760-7429779 Msa0053020:intron 40.0%
CTCACTTCTATAGCTGACAT+CGG + chr1_2:7430090-7430109 None:intergenic 40.0%
CTTCCAATGTAGAGAATCCA+AGG - chr1_2:7430409-7430428 Msa0053020:CDS 40.0%
TTAATTATGACTCCAGGCCT+TGG + chr1_2:7430429-7430448 None:intergenic 40.0%
TCATAAACATCACCACCATC+AGG + chr1_2:7430456-7430475 None:intergenic 40.0%
! GATGGTGGTGATGTTTATGA+AGG - chr1_2:7430456-7430475 Msa0053020:CDS 40.0%
ACGTCTTTAGTGTGAAGTGT+CGG + chr1_2:7430524-7430543 None:intergenic 40.0%
! AGTGGGAAAGTTGTTGATAG+TGG - chr1_2:7430750-7430769 Msa0053020:intron 40.0%
GTATACTACACTGATCATGG+AGG - chr1_2:7430792-7430811 Msa0053020:intron 40.0%
!! GTATTTTTGTTCGACACGTG+TGG + chr1_2:7430952-7430971 None:intergenic 40.0%
CTGTGTAGTTCTTCCATGTT+TGG - chr1_2:7431475-7431494 Msa0053020:intron 40.0%
GAATCTGGCAGTATCTTTGA+AGG - chr1_2:7431647-7431666 Msa0053020:intron 40.0%
CAAATGCAGTAGAAAGCAGT+TGG - chr1_2:7431711-7431730 Msa0053020:intron 40.0%
AATGCAGTAGAAAGCAGTTG+GGG - chr1_2:7431713-7431732 Msa0053020:intron 40.0%
ACTACTCCATGGTGATTGTA+TGG + chr1_2:7431895-7431914 None:intergenic 40.0%
! CTTATTTGCTAATGTGGTGC+AGG - chr1_2:7432250-7432269 Msa0053020:intron 40.0%
! TGATGGAGTATGGTGATGTA+GGG - chr1_2:7432312-7432331 Msa0053020:CDS 40.0%
CTTTGGTTAACTGCTGTTGA+AGG + chr1_2:7432431-7432450 None:intergenic 40.0%
CTTCAACAGCAGTTAACCAA+AGG - chr1_2:7432429-7432448 Msa0053020:CDS 40.0%
TGGTTACTGGATCTTGTTCT+CGG + chr1_2:7432589-7432608 None:intergenic 40.0%
!! TTTTGGAAGCAATGTCTCAC+AGG - chr1_2:7432692-7432711 Msa0053020:intron 40.0%
GACAACAGTGTGAAACTGAT+TGG - chr1_2:7432724-7432743 Msa0053020:intron 40.0%
! ATCACCACTTGTTGACAACT+GGG - chr1_2:7432807-7432826 Msa0053020:intron 40.0%
!! GAAGTAGTACCATGGTTTTG+AGG + chr1_2:7432837-7432856 None:intergenic 40.0%
!! TTGCTTTTATGCCTAAGCCA+TGG - chr1_2:7432909-7432928 Msa0053020:intron 40.0%
! TGCTTTTATGCCTAAGCCAT+GGG - chr1_2:7432910-7432929 Msa0053020:intron 40.0%
!! CAGTTTTATCATTGCTCCCA+TGG + chr1_2:7432929-7432948 None:intergenic 40.0%
TGTGGATCTCTATCTCAGTA+TGG - chr1_2:7433061-7433080 Msa0053020:intron 40.0%
AGGAATACAAACCGAGCAAA+TGG - chr1_2:7433123-7433142 Msa0053020:intron 40.0%
TTGGAACACTACTAGGACAT+TGG - chr1_2:7433343-7433362 Msa0053020:intron 40.0%
TGGAACACTACTAGGACATT+GGG - chr1_2:7433344-7433363 Msa0053020:intron 40.0%
CATATTGGACATTCCACAAC+AGG + chr1_2:7433615-7433634 None:intergenic 40.0%
GTCCAATATGATAGGGAACA+AGG - chr1_2:7433625-7433644 Msa0053020:intron 40.0%
GACCTTGTTCCCTATCATAT+TGG + chr1_2:7433630-7433649 None:intergenic 40.0%
TAAGTAGGTAATTGGCAGAC+AGG - chr1_2:7433673-7433692 Msa0053020:CDS 40.0%
! TCAAGATGACGGTGAGAAAG+AGG + chr1_2:7428935-7428954 None:intergenic 45.0%
GCAATCGGATATAATCTCCG+GGG + chr1_2:7428992-7429011 None:intergenic 45.0%
GGCAATCGGATATAATCTCC+GGG + chr1_2:7428993-7429012 None:intergenic 45.0%
ATGACAACGTTGAAGGGACT+AGG - chr1_2:7429057-7429076 Msa0053020:three_prime_UTR 45.0%
!!! AGGTGGGCTATTTTACTTGC+TGG - chr1_2:7429077-7429096 Msa0053020:three_prime_UTR 45.0%
GAGAATGGACCCTTCAGATT+AGG - chr1_2:7429788-7429807 Msa0053020:intron 45.0%
AGGCCTTGGATTCTCTACAT+TGG + chr1_2:7430415-7430434 None:intergenic 45.0%
AATGTAGAGAATCCAAGGCC+TGG - chr1_2:7430414-7430433 Msa0053020:CDS 45.0%
AATTACTCACCAAGAACCCC+TGG + chr1_2:7430819-7430838 None:intergenic 45.0%
GCATACAAGTAAGGACCAAC+TGG + chr1_2:7431340-7431359 None:intergenic 45.0%
! TATCTGGAGGCATGTGAATC+TGG - chr1_2:7431632-7431651 Msa0053020:intron 45.0%
! AAGTTGAGTACTCTGGAGGA+GGG + chr1_2:7431766-7431785 None:intergenic 45.0%
! AAGCAAGTTGAGTACTCTGG+AGG + chr1_2:7431770-7431789 None:intergenic 45.0%
! CCTAAGCAAGTTGAGTACTC+TGG + chr1_2:7431773-7431792 None:intergenic 45.0%
! CCAGAGTACTCAACTTGCTT+AGG - chr1_2:7431770-7431789 Msa0053020:intron 45.0%
GTGACCTATACAGCATTGCT+TGG - chr1_2:7431792-7431811 Msa0053020:intron 45.0%
CCATCCAAGCAATGCTGTAT+AGG + chr1_2:7431799-7431818 None:intergenic 45.0%
CCTATACAGCATTGCTTGGA+TGG - chr1_2:7431796-7431815 Msa0053020:intron 45.0%
TGCTAATGTGGTGCAGGTTA+AGG - chr1_2:7432256-7432275 Msa0053020:intron 45.0%
ATGTGGTGCAGGTTAAGGAT+AGG - chr1_2:7432261-7432280 Msa0053020:intron 45.0%
! GGTTCTCATGTGATGGAGTA+TGG - chr1_2:7432302-7432321 Msa0053020:intron 45.0%
! GTGATGGAGTATGGTGATGT+AGG - chr1_2:7432311-7432330 Msa0053020:CDS 45.0%
GAATGAGATCAGCATCCCTT+TGG + chr1_2:7432448-7432467 None:intergenic 45.0%
GGTTACTGGATCTTGTTCTC+GGG + chr1_2:7432588-7432607 None:intergenic 45.0%
! GATCACCACTTGTTGACAAC+TGG - chr1_2:7432806-7432825 Msa0053020:intron 45.0%
CAATCCCAGTTGTCAACAAG+TGG + chr1_2:7432814-7432833 None:intergenic 45.0%
TATCATTGCTCCCATGGCTT+AGG + chr1_2:7432923-7432942 None:intergenic 45.0%
TGCATTGCAGATGTTCGCAA+AGG + chr1_2:7433104-7433123 None:intergenic 45.0%
TTTGCGAACATCTGCAATGC+AGG - chr1_2:7433103-7433122 Msa0053020:intron 45.0%
GGAACACTACTAGGACATTG+GGG - chr1_2:7433345-7433364 Msa0053020:intron 45.0%
TACTAGGACATTGGGGAGTA+GGG - chr1_2:7433352-7433371 Msa0053020:intron 45.0%
GTTGCAGTGGCGTATGAAGT+TGG + chr1_2:7428814-7428833 None:intergenic 50.0%
AAGGTGAGAGGTAGTTGCAG+TGG + chr1_2:7428827-7428846 None:intergenic 50.0%
GACGGTGAGAAAGAGGATAG+TGG + chr1_2:7428928-7428947 None:intergenic 50.0%
AACATCCTTGCTGCTGTCTC+CGG - chr1_2:7428954-7428973 Msa0053020:three_prime_UTR 50.0%
TATAATCTCCGGGGAGGTCA+CGG + chr1_2:7428983-7429002 None:intergenic 50.0%
ATCGGATATAATCTCCGGGG+AGG + chr1_2:7428989-7429008 None:intergenic 50.0%
CTGGAGGCTTGAGATTGAGA+TGG + chr1_2:7429014-7429033 None:intergenic 50.0%
CATCTCAATCTCAAGCCTCC+AGG - chr1_2:7429012-7429031 Msa0053020:three_prime_UTR 50.0%
TTCAGGCTCATGGAAGAACC+TGG + chr1_2:7429033-7429052 None:intergenic 50.0%
ACAACGTTGAAGGGACTAGG+TGG - chr1_2:7429060-7429079 Msa0053020:three_prime_UTR 50.0%
CAACGTTGAAGGGACTAGGT+GGG - chr1_2:7429061-7429080 Msa0053020:three_prime_UTR 50.0%
CCATTCTCATCGTCCACTTG+CGG + chr1_2:7429776-7429795 None:intergenic 50.0%
ACAGGATTACACTGGTGCAG+AGG - chr1_2:7430668-7430687 Msa0053020:intron 50.0%
TACACTGATCATGGAGGTCC+AGG - chr1_2:7430798-7430817 Msa0053020:intron 50.0%
ACACTGATCATGGAGGTCCA+GGG - chr1_2:7430799-7430818 Msa0053020:intron 50.0%
GTCGGCAATAGCCTCAAACA+AGG + chr1_2:7431113-7431132 None:intergenic 50.0%
GTCTCTTCAGGTATGCCAGT+TGG - chr1_2:7431322-7431341 Msa0053020:intron 50.0%
AGTTGGGGAACATATTGCCC+TGG - chr1_2:7431728-7431747 Msa0053020:intron 50.0%
GTTGGGGAACATATTGCCCT+GGG - chr1_2:7431729-7431748 Msa0053020:intron 50.0%
TTGGGGAACATATTGCCCTG+GGG - chr1_2:7431730-7431749 Msa0053020:intron 50.0%
! AGTTGAGTACTCTGGAGGAG+GGG + chr1_2:7431765-7431784 None:intergenic 50.0%
! CAAGTTGAGTACTCTGGAGG+AGG + chr1_2:7431767-7431786 None:intergenic 50.0%
GCATTGCTTGGATGGAAGAC+AGG - chr1_2:7431804-7431823 Msa0053020:intron 50.0%
GGGCATCCGTCAATTGCATT+TGG + chr1_2:7432568-7432587 None:intergenic 50.0%
CTCGACAATGTTAGACCTGC+TGG - chr1_2:7432784-7432803 Msa0053020:intron 50.0%
TCAACAAGTGGTGATCCAGC+AGG + chr1_2:7432802-7432821 None:intergenic 50.0%
CTGGGATTGCCTCAAAACCA+TGG - chr1_2:7432825-7432844 Msa0053020:intron 50.0%
ACTGGTACAAGCTTGTGCTG+AGG + chr1_2:7433155-7433174 None:intergenic 50.0%
TGCAGAGAACTCCAAGGGTT+GGG + chr1_2:7433184-7433203 None:intergenic 50.0%
TTGCAGAGAACTCCAAGGGT+TGG + chr1_2:7433185-7433204 None:intergenic 50.0%
ACCCTTGGAGTTCTCTGCAA+AGG - chr1_2:7433185-7433204 Msa0053020:intron 50.0%
CCCTTTGCAGAGAACTCCAA+GGG + chr1_2:7433189-7433208 None:intergenic 50.0%
CCCTTGGAGTTCTCTGCAAA+GGG - chr1_2:7433186-7433205 Msa0053020:intron 50.0%
CCTTGGAGTTCTCTGCAAAG+GGG - chr1_2:7433187-7433206 Msa0053020:intron 50.0%
CTACTAGGACATTGGGGAGT+AGG - chr1_2:7433351-7433370 Msa0053020:intron 50.0%
!! GGGGAGTAGGGTTTTAGTAC+CGG - chr1_2:7433364-7433383 Msa0053020:intron 50.0%
TTCCACAACAGGCAGAACTG+TGG + chr1_2:7433604-7433623 None:intergenic 50.0%
AGGCTCATGGAAGAACCTGG+AGG + chr1_2:7429030-7429049 None:intergenic 55.0%
TTCTCATCGTCCACTTGCGG+TGG + chr1_2:7429773-7429792 None:intergenic 55.0%
CCGCAAGTGGACGATGAGAA+TGG - chr1_2:7429773-7429792 Msa0053020:intron 55.0%
TCAGCTCTTACAGGTGGGAG+TGG - chr1_2:7430732-7430751 Msa0053020:intron 55.0%
CAGCTCTTACAGGTGGGAGT+GGG - chr1_2:7430733-7430752 Msa0053020:intron 55.0%
CACTGATCATGGAGGTCCAG+GGG - chr1_2:7430800-7430819 Msa0053020:intron 55.0%
! GTTGAGTACTCTGGAGGAGG+GGG + chr1_2:7431764-7431783 None:intergenic 55.0%
! CAGTTCCGCAAAGCACCTGA+GGG - chr1_2:7432637-7432656 Msa0053020:intron 55.0%
GAGAACCCTCAGGTGCTTTG+CGG + chr1_2:7432645-7432664 None:intergenic 55.0%
! TTTTTCCGCGGAGAACCCTC+AGG + chr1_2:7432655-7432674 None:intergenic 55.0%
ACAAACCGAGCAAATGGCCG+AGG - chr1_2:7433129-7433148 Msa0053020:intron 55.0%
ACAAGCTTGTGCTGAGGCCT+CGG + chr1_2:7433149-7433168 None:intergenic 55.0%
CCAAGGGTTGGGAGGAATAC+TGG + chr1_2:7433173-7433192 None:intergenic 55.0%
CCAGTATTCCTCCCAACCCT+TGG - chr1_2:7433170-7433189 Msa0053020:intron 55.0%
AGAGAACTCCAAGGGTTGGG+AGG + chr1_2:7433181-7433200 None:intergenic 55.0%
CCCCTTTGCAGAGAACTCCA+AGG + chr1_2:7433190-7433209 None:intergenic 55.0%
GACCACAGTTCTGCCTGTTG+TGG - chr1_2:7433599-7433618 Msa0053020:intron 55.0%
CATGGAGGTCCAGGGGTTCT+TGG - chr1_2:7430807-7430826 Msa0053020:intron 60.0%
! AGTACTCTGGAGGAGGGGGA+GGG + chr1_2:7431760-7431779 None:intergenic 60.0%
! GCAGTTCCGCAAAGCACCTG+AGG - chr1_2:7432636-7432655 Msa0053020:intron 60.0%
AAGCACCTGAGGGTTCTCCG+CGG - chr1_2:7432647-7432666 Msa0053020:intron 60.0%
TGAGGCCTCGGCCATTTGCT+CGG + chr1_2:7433137-7433156 None:intergenic 60.0%
GGCTACCGGAGACAGCAGCA+AGG + chr1_2:7428962-7428981 None:intergenic 65.0%
! GAGTACTCTGGAGGAGGGGG+AGG + chr1_2:7431761-7431780 None:intergenic 65.0%
TCCGGTAGCCGTGACCTCCC+CGG - chr1_2:7428972-7428991 Msa0053020:three_prime_UTR 70.0%
TCCGGGGAGGTCACGGCTAC+CGG + chr1_2:7428976-7428995 None:intergenic 70.0%
!! GAGGGGGAGGGTACTCCCCA+GGG + chr1_2:7431748-7431767 None:intergenic 70.0%
!! GGAGGGGGAGGGTACTCCCC+AGG + chr1_2:7431749-7431768 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7428777 7434019 7428777 ID=Msa0053020;Name=Msa0053020
chr1_2 mRNA 7428777 7434019 7428777 ID=Msa0053020-mRNA-1;Parent=Msa0053020;Name=Msa0053020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=129|0.85|0.87|1|1|1|8|797|490
chr1_2 exon 7428777 7429756 7428777 ID=Msa0053020-mRNA-1:exon:2543;Parent=Msa0053020-mRNA-1
chr1_2 exon 7429950 7430156 7429950 ID=Msa0053020-mRNA-1:exon:2542;Parent=Msa0053020-mRNA-1
chr1_2 exon 7430315 7430564 7430315 ID=Msa0053020-mRNA-1:exon:2541;Parent=Msa0053020-mRNA-1
chr1_2 exon 7430971 7431170 7430971 ID=Msa0053020-mRNA-1:exon:2540;Parent=Msa0053020-mRNA-1
chr1_2 exon 7431379 7431464 7431379 ID=Msa0053020-mRNA-1:exon:2539;Parent=Msa0053020-mRNA-1
chr1_2 exon 7431968 7432124 7431968 ID=Msa0053020-mRNA-1:exon:2538;Parent=Msa0053020-mRNA-1
chr1_2 exon 7432308 7432472 7432308 ID=Msa0053020-mRNA-1:exon:2537;Parent=Msa0053020-mRNA-1
chr1_2 exon 7433666 7434019 7433666 ID=Msa0053020-mRNA-1:exon:2536;Parent=Msa0053020-mRNA-1
chr1_2 five_prime_UTR 7433891 7434019 7433891 ID=Msa0053020-mRNA-1:five_prime_utr;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7433666 7433890 7433666 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7432308 7432472 7432308 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7431968 7432124 7431968 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7431379 7431464 7431379 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7430971 7431170 7430971 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7430315 7430564 7430315 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7429950 7430156 7429950 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 CDS 7429574 7429756 7429574 ID=Msa0053020-mRNA-1:cds;Parent=Msa0053020-mRNA-1
chr1_2 three_prime_UTR 7428777 7429573 7428777 ID=Msa0053020-mRNA-1:three_prime_utr;Parent=Msa0053020-mRNA-1
Gene Sequence

>Msa0053020

ATGGACTTTTCTCAATTTTCCACTATCCTCTTTCTCACCGTCATCTTGAACATCCTTGCTGCTGTCTCCGGTAGCCGTGACCTCCCCGGAGATTATATCCGATTGCCATCTCAATCTCAAGCCTCCAGGTTCTTCCATGAGCCTGAAAATGATGACAACGTTGAAGGGACTAGGTGGGCTATTTTACTTGCTGGTTCTAATGGTTATTGGAATTATAGGCATCAGGCTGATGTTTGTCATGCGTATCAATTATTGAGGAATGGTGGCTTGAAAGAAGAAAACATTATTGTTTTCATGTATGATGATATTGCTTCCAATGTAGAGAATCCAAGGCCTGGAGTCATAATTAACAAACCTGATGGTGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGTGCAGAGGTACATGCTGACAATTTCTATGCTGCTTTACTTGGAAATAAATCAGCTCTTACAGGTGGGAGTGGGAAAGTTGTTGATAGTGGCCCAAATGATCATATTTTTGTATACTACACTGATCATGGAGGTCCAGGGGTTCTTGGTATGCCAGTTGGTCCTTACTTGTATGCATCTGATCTGAATGAAGTCTTGAAGAAAAAACATGCTTCTGGATCATATAAGAGCCTAGTATTTTATCTGGAGGCATGTGAATCTGGCAGTATCTTTGAAGGTCTTCTTCCAGAAGATATCAATATCTACGCGACAACGGCTTCAAATGCAGTAGAAAGCAGTTGGGGAACATATTGCCCTGGGGAGTACCCTCCCCCTCCTCCAGAGTACTCAACTTGCTTAGGTGACCTATACAGCATTGCTTGGATGGAAGACAGGAGTTTGGTAATTGATGTCTTATTTGCTAATGTGGTGCAGGTTAAGGATAGGACTATCAATGGTTACTATGGTTCTCATGTGATGGAGTATGGTGATGTAGGGCTTAGCAACAATCATCTCTTCCTATATTTGGGTACAAATCCTGCCAATGACAATATTAGTTTTGTGGATGAAAGCTCCTTGAAATTGAGATCACCTTCAACAGCAGTTAACCAAAGGGATGCTGATCTCATTCATTTCTGGGATAAGTTCCGCAAAGCACCTGAGGGTTCTCCGCGGAAAAATGAAGCACAAAAAGAAGTTTTGGAAGCAATGTCTCACAGGATGCATGTAGACAACAGTGTGAAACTGATTGGAAAGCTCTTATTTGGCATTGAAAAGGGTACTGAAATGCTCGACAATGTTAGACCTGCTGGATCACCACTTGTTGACAACTGGGATTGCCTCAAAACCATGGTGAAGACTTTTGAGACACATTGTGGATCTCTATCTCAGTATGGTATGAAACATATGAGGTCCTTTGCGAACATCTGCAATGCAGGAATACAAACCGAGCAAATGGCCGAGGCCTCAGCACAAGCTTGTACCAGTATTCCTCCCAACCCTTGGAGTTCTCTGCAAAGGGGTTTCAGTGCATAG
Protein sequence

>Msa0053020

MDFSQFSTILFLTVILNILAAVSGSRDLPGDYIRLPSQSQASRFFHEPENDDNVEGTRWAILLAGSNGYWNYRHQADVCHAYQLLRNGGLKEENIIVFMYDDIASNVENPRPGVIINKPDGGDVYEGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGSYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAVESSWGTYCPGEYPPPPPEYSTCLGDLYSIAWMEDRSLVIDVLFANVVQVKDRTINGYYGSHVMEYGDVGLSNNHLFLYLGTNPANDNISFVDESSLKLRSPSTAVNQRDADLIHFWDKFRKAPEGSPRKNEAQKEVLEAMSHRMHVDNSVKLIGKLLFGIEKGTEMLDNVRPAGSPLVDNWDCLKTMVKTFETHCGSLSQYGMKHMRSFANICNAGIQTEQMAEASAQACTSIPPNPWSSLQRGFSA*