AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098350 MtrunA17_Chr1g0151801 95.132 493 21 1 1 490 1 493 0.0 941
Msa0098350 MtrunA17_Chr3g0135491 72.617 493 121 6 3 490 1 484 0.0 742
Msa0098350 MtrunA17_Chr4g0056561 57.942 447 172 6 33 473 41 477 0.0 528
Msa0098350 MtrunA17_Chr7g0248651 50.905 442 202 5 46 476 35 472 2.04e-151 440
Msa0098350 MtrunA17_Chr7g0246051 57.511 233 99 0 46 278 34 266 2.21e-94 287
Msa0098350 MtrunA17_Chr7g0226421 65.909 132 45 0 52 183 28 159 1.70e-58 190
Msa0098350 MtrunA17_Chr7g0226441 47.895 190 87 2 292 473 13 198 2.80e-53 178
Msa0098350 MtrunA17_Chr7g0246061 40.722 194 108 4 285 476 1 189 1.37e-36 133
Msa0098350 MtrunA17_Chr7g0226431 69.014 71 22 0 215 285 1 71 1.60e-28 108
Msa0098350 MtrunA17_Chr2g0307771 30.409 171 116 3 59 227 44 213 1.65e-21 96.7
Msa0098350 MtrunA17_Chr1g0193781 28.488 172 118 4 59 227 34 203 2.42e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098350 AT4G32940.1 72.611 471 119 6 26 490 28 494 0.0 693
Msa0098350 AT2G25940.1 68.916 489 134 7 7 490 3 478 0.0 677
Msa0098350 AT1G62710.1 60.093 431 161 5 49 473 42 467 0.0 533
Msa0098350 AT3G20210.1 52.681 429 198 3 50 474 38 465 1.30e-152 443
Msa0098350 AT1G08750.3 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0098350 AT1G08750.2 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0098350 AT1G08750.1 29.050 179 124 3 51 227 20 197 9.55e-22 97.4

Find 177 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATCTCTTCCTATATT+TGG 0.063831 1_3:-4279590 Msa0098350:CDS
GAGCTCAATTACTATGATTT+TGG 0.156079 1_3:+4278522 None:intergenic
ATGCTGATCTCATTCATTTC+TGG 0.156966 1_3:-4279480 Msa0098350:CDS
CTGATTGGAAAGCTCTTATT+TGG 0.175472 1_3:-4279194 Msa0098350:CDS
TTGCTGGTTCTAATGGTTAT+TGG 0.191155 1_3:-4282890 Msa0098350:CDS
CTAATGGTTATTGGAATTAT+AGG 0.241588 1_3:-4282881 Msa0098350:CDS
AAAATAATTTCAAGGGATTA+TGG 0.245835 1_3:-4278380 Msa0098350:three_prime_UTR
ATGATGATGCTGTATATATT+TGG 0.250928 1_3:-4278147 Msa0098350:three_prime_UTR
GGAAATAAATCAGCTCTTAC+AGG 0.282325 1_3:-4281211 Msa0098350:CDS
GACCTTGTTCCCTATCATAT+TGG 0.296528 1_3:+4278306 None:intergenic
AATTTCTATGCTGCTTTACT+TGG 0.313296 1_3:-4281232 Msa0098350:CDS
TGAAGCACAAAAGGAAGTTT+TGG 0.318946 1_3:-4279258 Msa0098350:CDS
GATCACCACTTGTTGACAAC+TGG 0.329432 1_3:-4279127 Msa0098350:CDS
TAATAGTGTAAGTAGGTAAT+TGG 0.333430 1_3:-4278268 Msa0098350:three_prime_UTR
TATCTGGAGGCATGTGAATC+TGG 0.334996 1_3:-4280301 Msa0098350:CDS
CATGGAGGTCCAGGGGTTCT+TGG 0.340017 1_3:-4281127 Msa0098350:intron
AATCATCTCTTCCTATATTT+GGG 0.340373 1_3:-4279589 Msa0098350:CDS
GGGATTATGGCATTTATAAC+TGG 0.343812 1_3:-4278367 Msa0098350:three_prime_UTR
CATTCTCCTTCCTTCAATCA+TGG 0.352942 1_3:-4283096 Msa0098350:exon
TGCTAATGTGGTGCAGGTTA+AGG 0.359305 1_3:-4279677 Msa0098350:CDS
TGCTGATCTCATTCATTTCT+GGG 0.362031 1_3:-4279479 Msa0098350:CDS
AGAGAAGATTTAAATAATAA+AGG 0.366081 1_3:+4283140 None:intergenic
CATGATTCTGTAAATACAAT+TGG 0.366402 1_3:-4278609 Msa0098350:three_prime_UTR
CAGGATTTGTACCCAAATAT+AGG 0.367367 1_3:+4279578 None:intergenic
CCAAGGGTTGGGAGGAATAC+TGG 0.377257 1_3:+4278763 None:intergenic
GGTTCTCATGTGATGGAGTA+TGG 0.388016 1_3:-4279631 Msa0098350:CDS
GCTCTTATTTGGCATTGAAA+AGG 0.393897 1_3:-4279183 Msa0098350:CDS
TCTCATTCATTTCTGGGATA+AGG 0.394878 1_3:-4279473 Msa0098350:intron
GCGTAGATATTGATATCTTC+TGG 0.396831 1_3:+4280256 None:intergenic
CCCTTGGAGTTCTCTGCAAA+GGG 0.400932 1_3:-4278747 Msa0098350:CDS
TTACACTTAATACAAATTGT+TGG 0.402400 1_3:+4277950 None:intergenic
AGGACTATCAATGGTTACTA+TGG 0.412584 1_3:-4279652 Msa0098350:CDS
TGGAACACTACTAGGACATT+GGG 0.413330 1_3:-4278589 Msa0098350:three_prime_UTR
CTCGACAATGTTAGACCTGC+TGG 0.413552 1_3:-4279149 Msa0098350:CDS
TTTGTATACTACACTGATCA+TGG 0.415438 1_3:-4281145 Msa0098350:CDS
TCCGGGGAGGTCACGGCTAC+CGG 0.417671 1_3:+4283010 None:intergenic
CCATCCAAGCAATGCTGTAT+AGG 0.421967 1_3:+4280137 None:intergenic
TAACAGCATAATTATGTTGT+TGG 0.428144 1_3:+4278001 None:intergenic
TTTGCGAACATTTGCAATGC+AGG 0.429652 1_3:-4278830 Msa0098350:CDS
TGCAGAGAACTCCAAGGGTT+GGG 0.429995 1_3:+4278752 None:intergenic
TGTTAGTCTTTATAGTTAGT+TGG 0.433025 1_3:-4278113 Msa0098350:three_prime_UTR
TGTGGATCTCTATCTCAGTA+TGG 0.435172 1_3:-4278872 Msa0098350:CDS
CACAAAACTAATATTGTCAT+TGG 0.435815 1_3:+4279555 None:intergenic
TTAATTATGACTCCAGGCCT+TGG 0.438134 1_3:+4281513 None:intergenic
AACATCCTTGCTGCTGTCTC+CGG 0.438904 1_3:-4283029 Msa0098350:CDS
CTCTTATTTGGCATTGAAAA+GGG 0.444223 1_3:-4279182 Msa0098350:CDS
AATACAATTGGAACACTACT+AGG 0.446735 1_3:-4278597 Msa0098350:three_prime_UTR
CTACTAGGACATTGGGGAGT+AGG 0.452123 1_3:-4278582 Msa0098350:three_prime_UTR
TGAGGCCTCGGCCATTTGCT+CGG 0.452146 1_3:+4278799 None:intergenic
CCTATACAGCATTGCTTGGA+TGG 0.453083 1_3:-4280137 Msa0098350:CDS
GTCTCTTCAGGTATGCCAGT+TGG 0.457359 1_3:-4280611 Msa0098350:intron
TACACTGATCATGGAGGTCC+AGG 0.458300 1_3:-4281136 Msa0098350:CDS
GACGGTGAGAAAGAGGATAG+TGG 0.460059 1_3:+4283058 None:intergenic
ACAAGCTTGTGCTGAGGCCT+CGG 0.460376 1_3:+4278787 None:intergenic
TGAAGGTGATCTCAATTTCA+AGG 0.461933 1_3:+4279522 None:intergenic
GTCATGCGTATCAATTATTG+AGG 0.462318 1_3:-4281605 Msa0098350:CDS
CATATTGGACATTCCACAAC+AGG 0.464539 1_3:+4278321 None:intergenic
TACTAGGACATTGGGGAGTA+GGG 0.467212 1_3:-4278581 Msa0098350:three_prime_UTR
TTGGAACACTACTAGGACAT+TGG 0.467994 1_3:-4278590 Msa0098350:three_prime_UTR
AATTCTGTTGCAAAGTGTCT+AGG 0.469631 1_3:+4278231 None:intergenic
CTTATTTGCTAATGTGGTGC+AGG 0.471890 1_3:-4279683 Msa0098350:CDS
CTTTGGTTAACTGCTGTTGA+AGG 0.474696 1_3:+4279505 None:intergenic
TGTGGAATGTCCAATATGAT+AGG 0.476129 1_3:-4278316 Msa0098350:three_prime_UTR
TGGCAATCGGATATAATCTC+CGG 0.476800 1_3:+4282992 None:intergenic
GAAAATGATGACAACGTTGA+AGG 0.477273 1_3:-4282933 Msa0098350:CDS
CATCTCAATCTCAAGCCTCC+AGG 0.478973 1_3:-4282971 Msa0098350:CDS
AAACTAATATTGTCATTGGC+AGG 0.480772 1_3:+4279559 None:intergenic
GAATGAGATCAGCATCCCTT+TGG 0.480791 1_3:+4279488 None:intergenic
CCAGAGTACTCAACTTGCTT+AGG 0.481337 1_3:-4280163 Msa0098350:CDS
GCATACAAGTAAGGACCAAC+TGG 0.486355 1_3:+4280596 None:intergenic
TTATTGGAATTATAGGCATC+AGG 0.488640 1_3:-4282874 Msa0098350:intron
TGATCTCTACTTGATATTGT+GGG 0.489618 1_3:-4278475 Msa0098350:three_prime_UTR
TAAGTAGGTAATTGGCAGAC+AGG 0.492905 1_3:-4278260 Msa0098350:three_prime_UTR
TGATGTCTTATTTGCTAATG+TGG 0.492908 1_3:-4279689 Msa0098350:CDS
ATGATCTCTACTTGATATTG+TGG 0.495704 1_3:-4278476 Msa0098350:three_prime_UTR
TCATAAACATCACCACCATC+AGG 0.496461 1_3:+4281486 None:intergenic
AGGAATACAAACCGAGCAAA+TGG 0.496796 1_3:-4278810 Msa0098350:CDS
GTTGAGTACTCTGGAGGAGG+GGG 0.498780 1_3:+4280172 None:intergenic
GTGACCTATACAGCATTGCT+TGG 0.499223 1_3:-4280141 Msa0098350:CDS
TGAGAAAAGTCCATGATTGA+AGG 0.499589 1_3:+4283086 None:intergenic
AGATCAGATGCATACAAGTA+AGG 0.499897 1_3:+4280587 None:intergenic
AAATGCAGTAGAAAGCAGTT+GGG 0.502368 1_3:-4280221 Msa0098350:CDS
ATCACCACTTGTTGACAACT+GGG 0.503223 1_3:-4279126 Msa0098350:CDS
GTGATGGAGTATGGTGATGT+AGG 0.504095 1_3:-4279622 Msa0098350:CDS
CAAATGCAGTAGAAAGCAGT+TGG 0.506782 1_3:-4280222 Msa0098350:CDS
TTGCAGAGAACTCCAAGGGT+TGG 0.506910 1_3:+4278751 None:intergenic
GACAACAGTGTGAAACTGAT+TGG 0.509576 1_3:-4279209 Msa0098350:CDS
CCAGTATTCCTCCCAACCCT+TGG 0.511464 1_3:-4278763 Msa0098350:CDS
GAATCTGGCAGTATCTTTGA+AGG 0.512925 1_3:-4280286 Msa0098350:CDS
GCATTGCTTGGATGGAAGAC+AGG 0.514105 1_3:-4280129 Msa0098350:intron
GGTTTGTTAATTATGACTCC+AGG 0.517005 1_3:+4281507 None:intergenic
TTCAGGTTCATGGAAGAACC+TGG 0.517884 1_3:+4282953 None:intergenic
GGCAATCGGATATAATCTCC+GGG 0.519142 1_3:+4282993 None:intergenic
GAGAACCCTCAGGTGCTTTG+CGG 0.521251 1_3:+4279291 None:intergenic
TATAATCTCCGGGGAGGTCA+CGG 0.522714 1_3:+4283003 None:intergenic
ACCCTTGGAGTTCTCTGCAA+AGG 0.523617 1_3:-4278748 Msa0098350:CDS
ACATACTTGTTTGTGACAAG+AGG 0.524150 1_3:+4278450 None:intergenic
AGTTGGGGAACATATTGCCC+TGG 0.526331 1_3:-4280205 Msa0098350:CDS
CTTGAGATTGAGATGGCAAT+CGG 0.526844 1_3:+4282979 None:intergenic
AATACAACCCTATCACTGAA+TGG 0.531549 1_3:+4278412 None:intergenic
TCAGCTCTTACAGGTGGGAG+TGG 0.533587 1_3:-4281202 Msa0098350:CDS
GACCACAGTTCTGCCTGTTG+TGG 0.539312 1_3:-4278334 Msa0098350:three_prime_UTR
CAAGTTGAGTACTCTGGAGG+AGG 0.540236 1_3:+4280169 None:intergenic
TCCGGTAGCCGTGACCTCCC+CGG 0.541628 1_3:-4283011 Msa0098350:CDS
AATGTAGAGAATCCAAGGCC+TGG 0.541898 1_3:-4281525 Msa0098350:CDS
AAAATGATGACAACGTTGAA+GGG 0.542555 1_3:-4282932 Msa0098350:CDS
CCTAAGCAAGTTGAGTACTC+TGG 0.544668 1_3:+4280163 None:intergenic
GTTGGGGAACATATTGCCCT+GGG 0.545583 1_3:-4280204 Msa0098350:CDS
GTTGCAGTGGCGTATGAAGT+TGG 0.550472 1_3:+4283172 None:intergenic
ATTCTGTTGCAAAGTGTCTA+GGG 0.556510 1_3:+4278232 None:intergenic
TCAAGATGACGGTGAGAAAG+AGG 0.557472 1_3:+4283051 None:intergenic
AGTTGAGTACTCTGGAGGAG+GGG 0.559521 1_3:+4280171 None:intergenic
GTTAAGGATAGGACTATCAA+TGG 0.561264 1_3:-4279661 Msa0098350:CDS
AGGCCTTGGATTCTCTACAT+TGG 0.562654 1_3:+4281527 None:intergenic
AGTGGGAAAGTTGTTGATAG+TGG 0.565083 1_3:-4281184 Msa0098350:CDS
GCGTATCAATTATTGAGGAA+TGG 0.567662 1_3:-4281600 Msa0098350:CDS
AGGAGAATGAATGAGTGAAG+AGG 0.569468 1_3:+4283110 None:intergenic
TTCTTATGACAGGATTACAC+TGG 0.570349 1_3:-4281274 Msa0098350:intron
AGCAAGGATGTTCAAGATGA+CGG 0.570580 1_3:+4283040 None:intergenic
GTCATAATTAACAAACCTGA+TGG 0.573212 1_3:-4281501 Msa0098350:CDS
TGCATTGCAAATGTTCGCAA+AGG 0.573331 1_3:+4278832 None:intergenic
AATTACTCACCAAGAACCCC+TGG 0.573730 1_3:+4281118 None:intergenic
ATTATGGCATTTATAACTGG+AGG 0.576560 1_3:-4278364 Msa0098350:three_prime_UTR
GCAGTTCCGCAAAGCACCTG+AGG 0.577006 1_3:-4279297 Msa0098350:intron
TTCAACAGCAGTTAACCAAA+GGG 0.582658 1_3:-4279503 Msa0098350:CDS
CAAAGGCTTTAATATGTCAT+CGG 0.582811 1_3:+4278550 None:intergenic
AAGTTGAGTACTCTGGAGGA+GGG 0.582976 1_3:+4280170 None:intergenic
TCAACAAGTGGTGATCCAGC+AGG 0.583241 1_3:+4279134 None:intergenic
ATGTGGTGCAGGTTAAGGAT+AGG 0.583690 1_3:-4279672 Msa0098350:CDS
CTTCCAATGTAGAGAATCCA+AGG 0.584961 1_3:-4281530 Msa0098350:CDS
ACAAACCGAGCAAATGGCCG+AGG 0.586423 1_3:-4278804 Msa0098350:CDS
TTACTATGGTTCTCATGTGA+TGG 0.587089 1_3:-4279638 Msa0098350:CDS
AATAAATCAGCTCTTACAGG+TGG 0.589532 1_3:-4281208 Msa0098350:CDS
AAAAGTCCATGATTGAAGGA+AGG 0.592337 1_3:+4283090 None:intergenic
TGATGGAGTATGGTGATGTA+GGG 0.594785 1_3:-4279621 Msa0098350:CDS
ACACTGATCATGGAGGTCCA+GGG 0.595033 1_3:-4281135 Msa0098350:CDS
CCCTTTGCAGAGAACTCCAA+GGG 0.601430 1_3:+4278747 None:intergenic
AGTATGGTATGAAACATATG+AGG 0.602512 1_3:-4278856 Msa0098350:CDS
CAGCTCTTACAGGTGGGAGT+GGG 0.602741 1_3:-4281201 Msa0098350:CDS
CAGTTCCGCAAAGCACCTGA+GGG 0.606664 1_3:-4279296 Msa0098350:CDS
CAATCCCAGTTGTCAACAAG+TGG 0.612244 1_3:+4279122 None:intergenic
CTGGAGGCTTGAGATTGAGA+TGG 0.612586 1_3:+4282972 None:intergenic
TATCAATTATTGAGGAATGG+TGG 0.612607 1_3:-4281597 Msa0098350:CDS
CCCCTTTGCAGAGAACTCCA+AGG 0.617909 1_3:+4278746 None:intergenic
ATGACAACGTTGAAGGGACT+AGG 0.618129 1_3:-4282926 Msa0098350:CDS
GTCCAATATGATAGGGAACA+AGG 0.619802 1_3:-4278308 Msa0098350:three_prime_UTR
CACTGATCATGGAGGTCCAG+GGG 0.620699 1_3:-4281134 Msa0098350:CDS
GATCTCTACTTGATATTGTG+GGG 0.621074 1_3:-4278474 Msa0098350:three_prime_UTR
CTTCAACAGCAGTTAACCAA+AGG 0.621499 1_3:-4279504 Msa0098350:CDS
ATTTAAATAATAAAGGTGAG+AGG 0.628502 1_3:+4283147 None:intergenic
TTGTGTGTAATAGTGTAAGT+AGG 0.633094 1_3:-4278275 Msa0098350:three_prime_UTR
TGTTTATGAAGGAGTTCCAA+AGG 0.634134 1_3:-4281472 Msa0098350:intron
CCTTGGAGTTCTCTGCAAAG+GGG 0.636445 1_3:-4278746 Msa0098350:CDS
CTGGGATTGCCTCAAAACCA+TGG 0.636860 1_3:-4279108 Msa0098350:intron
ACAACGTTGAAGGGACTAGG+TGG 0.636966 1_3:-4282923 Msa0098350:CDS
ATAAATCAGCTCTTACAGGT+GGG 0.637399 1_3:-4281207 Msa0098350:CDS
TATCAATATCTACGCGACAA+CGG 0.638805 1_3:-4280248 Msa0098350:CDS
AGAGAACTCCAAGGGTTGGG+AGG 0.639144 1_3:+4278755 None:intergenic
GATGGTGGTGATGTTTATGA+AGG 0.641773 1_3:-4281483 Msa0098350:CDS
GTGGAATGTCCAATATGATA+GGG 0.649089 1_3:-4278315 Msa0098350:three_prime_UTR
AAGGTGAGAGGTAGTTGCAG+TGG 0.649923 1_3:+4283159 None:intergenic
ATAATTAACAAACCTGATGG+TGG 0.650511 1_3:-4281498 Msa0098350:CDS
TTATGGCATTTATAACTGGA+GGG 0.650588 1_3:-4278363 Msa0098350:three_prime_UTR
CAACGTTGAAGGGACTAGGT+GGG 0.651451 1_3:-4282922 Msa0098350:CDS
ACAGGATTACACTGGTGCAG+AGG 0.651826 1_3:-4281266 Msa0098350:intron
AATGCAGTAGAAAGCAGTTG+GGG 0.656559 1_3:-4280220 Msa0098350:CDS
AAGCAAGTTGAGTACTCTGG+AGG 0.665445 1_3:+4280166 None:intergenic
ATCGGATATAATCTCCGGGG+AGG 0.681142 1_3:+4282997 None:intergenic
ACTGGTACAAGCTTGTGCTG+AGG 0.694000 1_3:+4278781 None:intergenic
GGAACACTACTAGGACATTG+GGG 0.694977 1_3:-4278588 Msa0098350:three_prime_UTR
TTCCACAACAGGCAGAACTG+TGG 0.706328 1_3:+4278332 None:intergenic
AGGTTCATGGAAGAACCTGG+AGG 0.710107 1_3:+4282956 None:intergenic
GGCTACCGGAGACAGCAGCA+AGG 0.718393 1_3:+4283024 None:intergenic
GTATACTACACTGATCATGG+AGG 0.754047 1_3:-4281142 Msa0098350:CDS
AAGCACCTGAGGGTTCTCCG+CGG 0.755716 1_3:-4279286 Msa0098350:CDS
TTGGGGAACATATTGCCCTG+GGG 0.755738 1_3:-4280203 Msa0098350:CDS
GCAATCGGATATAATCTCCG+GGG 0.767916 1_3:+4282994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATAAACTTTTTTTTAA+AGG - chr1_3:4278321-4278340 Msa0098350:three_prime_UTR 10.0%
!! TATTTATTTGTCTATTTAAT+TGG + chr1_3:4278412-4278431 None:intergenic 10.0%
!! TATTTCAAAATTGTATTTAT+TGG - chr1_3:4280431-4280450 Msa0098350:intron 10.0%
!!! ATACTAAAATAATTTTACAA+AGG + chr1_3:4282941-4282960 None:intergenic 10.0%
!! AGAGAAGATTTAAATAATAA+AGG + chr1_3:4278003-4278022 None:intergenic 15.0%
!!! CAAATAAATACTTTTTTTGA+AGG - chr1_3:4278422-4278441 Msa0098350:three_prime_UTR 15.0%
!! AGTAAAAAAAAAAAAACTCA+AGG + chr1_3:4278562-4278581 None:intergenic 15.0%
!! ATAAACTAATAATACAATTC+TGG - chr1_3:4278655-4278674 Msa0098350:three_prime_UTR 15.0%
!! TTTATAAAAACTCAAGTATT+TGG + chr1_3:4279028-4279047 None:intergenic 15.0%
!! ATACAAAAATATGATCATTT+GGG + chr1_3:4279982-4280001 None:intergenic 15.0%
!! TATACAAAAATATGATCATT+TGG + chr1_3:4279983-4280002 None:intergenic 15.0%
!! GACTTTACATTAAAAAAATA+TGG - chr1_3:4282177-4282196 Msa0098350:intron 15.0%
!! TTAGAAAAATTAAGCTAAAA+AGG + chr1_3:4283075-4283094 None:intergenic 15.0%
!! ATTTAAATAATAAAGGTGAG+AGG + chr1_3:4277996-4278015 None:intergenic 20.0%
!!! ATGATTTTACCAATTTATGT+TGG + chr1_3:4278471-4278490 None:intergenic 20.0%
!!! ATCTGAGTTTTTATTTTTGT+CGG - chr1_3:4278589-4278608 Msa0098350:three_prime_UTR 20.0%
!!! GTTATCACTTGATTTTAATT+TGG - chr1_3:4278677-4278696 Msa0098350:three_prime_UTR 20.0%
!!! ACATTTTCATTAATCTGTAT+TGG + chr1_3:4278776-4278795 None:intergenic 20.0%
!!! ACTTATAATTTAAAGTCAAC+TGG - chr1_3:4279257-4279276 Msa0098350:CDS 20.0%
!! AATGAAAATAGTTGAATGTA+TGG - chr1_3:4279318-4279337 Msa0098350:intron 20.0%
!! ATGAAAATAGTTGAATGTAT+GGG - chr1_3:4279319-4279338 Msa0098350:intron 20.0%
!! TTGAAAAACAATTTATGTAC+AGG - chr1_3:4279349-4279368 Msa0098350:intron 20.0%
!! TGAAAAACAATTTATGTACA+GGG - chr1_3:4279350-4279369 Msa0098350:intron 20.0%
!! TTGAATATTATCACATGTAT+CGG + chr1_3:4280186-4280205 None:intergenic 20.0%
!! GAAATAATTAAATCCAAACA+TGG + chr1_3:4280698-4280717 None:intergenic 20.0%
!! TGTTTGGATTTAATTATTTC+AGG - chr1_3:4280698-4280717 Msa0098350:intron 20.0%
!! TTGCAAGAAAAATAATTTCA+AGG - chr1_3:4282752-4282771 Msa0098350:intron 20.0%
!! TGCAAGAAAAATAATTTCAA+GGG - chr1_3:4282753-4282772 Msa0098350:intron 20.0%
!! AAAATAATTTCAAGGGATTA+TGG - chr1_3:4282760-4282779 Msa0098350:intron 20.0%
!! TTACACTTAATACAAATTGT+TGG + chr1_3:4283193-4283212 None:intergenic 20.0%
! CTAATGGTTATTGGAATTAT+AGG - chr1_3:4278259-4278278 Msa0098350:three_prime_UTR 25.0%
!! CTTTAGAAACCAACATAAAT+TGG - chr1_3:4278459-4278478 Msa0098350:three_prime_UTR 25.0%
! AAATCATGAAGTGATTTGAT+TGG - chr1_3:4278484-4278503 Msa0098350:three_prime_UTR 25.0%
!!! TCTGAGTTTTTATTTTTGTC+GGG - chr1_3:4278590-4278609 Msa0098350:three_prime_UTR 25.0%
!!! CTGATATACATGACTTTTTT+TGG + chr1_3:4278827-4278846 None:intergenic 25.0%
! TAACATGTTGATACAATCTT+TGG + chr1_3:4278899-4278918 None:intergenic 25.0%
! TGAAAATAGTTGAATGTATG+GGG - chr1_3:4279320-4279339 Msa0098350:intron 25.0%
! ATTTATGTACAGGGATTAAA+TGG - chr1_3:4279359-4279378 Msa0098350:intron 25.0%
! AGATAATGTTGAATTTCAGA+AGG - chr1_3:4279396-4279415 Msa0098350:intron 25.0%
!! ACTAAAATTGACTTTACCTT+TGG + chr1_3:4279687-4279706 None:intergenic 25.0%
! AGCTATTGAATGTAACAATA+TGG + chr1_3:4279769-4279788 None:intergenic 25.0%
!! AAACTTTTTGATGAAAGACA+TGG - chr1_3:4280064-4280083 Msa0098350:intron 25.0%
! TAAGTTGTTTGTATGTGTTT+AGG - chr1_3:4280277-4280296 Msa0098350:CDS 25.0%
! ACAATAAACACACTATTTGT+CGG + chr1_3:4280338-4280357 None:intergenic 25.0%
!! TTTGATTGAATTGTGTTTTG+TGG - chr1_3:4280366-4280385 Msa0098350:intron 25.0%
!! TATTTCATTCCAACTGTTTT+TGG + chr1_3:4280413-4280432 None:intergenic 25.0%
!! GTTCCTTTCTATTTCTTATT+TGG - chr1_3:4280507-4280526 Msa0098350:intron 25.0%
! AGACCAAATAAGAAATAGAA+AGG + chr1_3:4280513-4280532 None:intergenic 25.0%
! AATTTCTTCGACTTATGTAA+TGG - chr1_3:4280802-4280821 Msa0098350:intron 25.0%
! AACTTACCAATTTATATTGC+TGG + chr1_3:4281286-4281305 None:intergenic 25.0%
! AATATGTGATTAAGCATTCA+AGG + chr1_3:4281388-4281407 None:intergenic 25.0%
! AATCATCTCTTCCTATATTT+GGG - chr1_3:4281551-4281570 Msa0098350:CDS 25.0%
! CACAAAACTAATATTGTCAT+TGG + chr1_3:4281588-4281607 None:intergenic 25.0%
!!! CAATGACAATATTAGTTTTG+TGG - chr1_3:4281586-4281605 Msa0098350:CDS 25.0%
! TTACGTTTAATTGAAATGCA+CGG + chr1_3:4281741-4281760 None:intergenic 25.0%
!! AACCAGATATTGAGTATTTT+TGG - chr1_3:4281811-4281830 Msa0098350:intron 25.0%
! TGAACAAAAAAAGCAGATTA+AGG + chr1_3:4282226-4282245 None:intergenic 25.0%
!!! TTAATCTGCTTTTTTTGTTC+AGG - chr1_3:4282225-4282244 Msa0098350:intron 25.0%
!! TTTTACAAAGTGCACATTTT+AGG + chr1_3:4282435-4282454 None:intergenic 25.0%
! CATGATTCTGTAAATACAAT+TGG - chr1_3:4282531-4282550 Msa0098350:intron 25.0%
!! TCTCAATTTCTTTTGATAGA+TGG - chr1_3:4282639-4282658 Msa0098350:intron 25.0%
!! TTTTTAATCCATTCAGTGAT+AGG - chr1_3:4282720-4282739 Msa0098350:intron 25.0%
!! TTTTAATCCATTCAGTGATA+GGG - chr1_3:4282721-4282740 Msa0098350:intron 25.0%
! TAATAGTGTAAGTAGGTAAT+TGG - chr1_3:4282872-4282891 Msa0098350:intron 25.0%
!! ATGATGATGCTGTATATATT+TGG - chr1_3:4282993-4283012 Msa0098350:CDS 25.0%
!!! TGTTAGTCTTTATAGTTAGT+TGG - chr1_3:4283027-4283046 Msa0098350:CDS 25.0%
! TAACAGCATAATTATGTTGT+TGG + chr1_3:4283142-4283161 None:intergenic 25.0%
AAAATGATGACAACGTTGAA+GGG - chr1_3:4278208-4278227 Msa0098350:three_prime_UTR 30.0%
!!! ATTTTACTTGCTGGTTCTAA+TGG - chr1_3:4278243-4278262 Msa0098350:three_prime_UTR 30.0%
TTATTGGAATTATAGGCATC+AGG - chr1_3:4278266-4278285 Msa0098350:three_prime_UTR 30.0%
AGTAACATCATCAAAGACAA+AGG + chr1_3:4278533-4278552 None:intergenic 30.0%
!!! CTGAGTTTTTATTTTTGTCG+GGG - chr1_3:4278591-4278610 Msa0098350:three_prime_UTR 30.0%
AATTTGGTCTCTATCAGAAT+TGG - chr1_3:4278693-4278712 Msa0098350:three_prime_UTR 30.0%
CGTATATGTTTCACATTCAT+TGG - chr1_3:4278863-4278882 Msa0098350:CDS 30.0%
TTGACTAATCCTAATCTGAA+GGG + chr1_3:4278997-4279016 None:intergenic 30.0%
ATTGACTAATCCTAATCTGA+AGG + chr1_3:4278998-4279017 None:intergenic 30.0%
TATCAATTATTGAGGAATGG+TGG - chr1_3:4279543-4279562 Msa0098350:CDS 30.0%
GTCATAATTAACAAACCTGA+TGG - chr1_3:4279639-4279658 Msa0098350:CDS 30.0%
ATAATTAACAAACCTGATGG+TGG - chr1_3:4279642-4279661 Msa0098350:CDS 30.0%
!! TAAGAGCTTTTTCTTATGAC+AGG - chr1_3:4279856-4279875 Msa0098350:intron 30.0%
!! AATTTCTATGCTGCTTTACT+TGG - chr1_3:4279908-4279927 Msa0098350:intron 30.0%
TTTGTATACTACACTGATCA+TGG - chr1_3:4279995-4280014 Msa0098350:intron 30.0%
TAACACTAACATATCGACAT+TGG + chr1_3:4280233-4280252 None:intergenic 30.0%
CACAATAAACCAAAAACAGT+TGG - chr1_3:4280401-4280420 Msa0098350:intron 30.0%
! ATTTCTTATTTGGTCTCTTC+AGG - chr1_3:4280517-4280536 Msa0098350:intron 30.0%
TTGAAGAAAAAACATGCTTC+TGG - chr1_3:4280586-4280605 Msa0098350:CDS 30.0%
ACTATTACTAGTGACTTACT+AGG + chr1_3:4280624-4280643 None:intergenic 30.0%
! AGCTTGCATAATAAACCTTT+TGG - chr1_3:4280742-4280761 Msa0098350:intron 30.0%
!! TTAGTTTGTCTTCAACCAAA+AGG + chr1_3:4280760-4280779 None:intergenic 30.0%
TTATAACCATACAATCACCA+TGG - chr1_3:4281093-4281112 Msa0098350:intron 30.0%
TTTGCACCAGCAATATAAAT+TGG - chr1_3:4281277-4281296 Msa0098350:intron 30.0%
CAAGTGAGCAACAATTTATA+AGG + chr1_3:4281314-4281333 None:intergenic 30.0%
!! TGATGTCTTATTTGCTAATG+TGG - chr1_3:4281451-4281470 Msa0098350:intron 30.0%
CAATCATCTCTTCCTATATT+TGG - chr1_3:4281550-4281569 Msa0098350:CDS 30.0%
AAACTAATATTGTCATTGGC+AGG + chr1_3:4281584-4281603 None:intergenic 30.0%
AAACATCCAAATGCAATTGA+CGG - chr1_3:4281766-4281785 Msa0098350:intron 30.0%
AATACTCAATATCTGGTTAC+TGG + chr1_3:4281809-4281828 None:intergenic 30.0%
CACCAAAAATACTCAATATC+TGG + chr1_3:4281816-4281835 None:intergenic 30.0%
!!! TGAGTATTTTTGGTGTTCAT+TGG - chr1_3:4281821-4281840 Msa0098350:intron 30.0%
! CTCTTATTTGGCATTGAAAA+GGG - chr1_3:4281958-4281977 Msa0098350:intron 30.0%
AGTATGGTATGAAACATATG+AGG - chr1_3:4282284-4282303 Msa0098350:intron 30.0%
AATACAATTGGAACACTACT+AGG - chr1_3:4282543-4282562 Msa0098350:intron 30.0%
! CAAAGGCTTTAATATGTCAT+CGG + chr1_3:4282593-4282612 None:intergenic 30.0%
! CTATGATTTTGGATGAACAA+AGG + chr1_3:4282610-4282629 None:intergenic 30.0%
! GAGCTCAATTACTATGATTT+TGG + chr1_3:4282621-4282640 None:intergenic 30.0%
ATGATCTCTACTTGATATTG+TGG - chr1_3:4282664-4282683 Msa0098350:intron 30.0%
TGATCTCTACTTGATATTGT+GGG - chr1_3:4282665-4282684 Msa0098350:intron 30.0%
ATTATGGCATTTATAACTGG+AGG - chr1_3:4282776-4282795 Msa0098350:intron 30.0%
TTATGGCATTTATAACTGGA+GGG - chr1_3:4282777-4282796 Msa0098350:intron 30.0%
TTGTGTGTAATAGTGTAAGT+AGG - chr1_3:4282865-4282884 Msa0098350:intron 30.0%
AAAAGTCCATGATTGAAGGA+AGG + chr1_3:4278053-4278072 None:intergenic 35.0%
TGAGAAAAGTCCATGATTGA+AGG + chr1_3:4278057-4278076 None:intergenic 35.0%
!!! TGTCATCATTTTCAGGTTCA+TGG + chr1_3:4278200-4278219 None:intergenic 35.0%
! TCAACGTTGTCATCATTTTC+AGG + chr1_3:4278207-4278226 None:intergenic 35.0%
GAAAATGATGACAACGTTGA+AGG - chr1_3:4278207-4278226 Msa0098350:three_prime_UTR 35.0%
!! TTGCTGGTTCTAATGGTTAT+TGG - chr1_3:4278250-4278269 Msa0098350:three_prime_UTR 35.0%
TGTCTCTCTATCAATTTCGA+TGG - chr1_3:4278923-4278942 Msa0098350:intron 35.0%
!! TTTTTGTTGCTTGCTTCATC+AGG - chr1_3:4279503-4279522 Msa0098350:CDS 35.0%
GTCATGCGTATCAATTATTG+AGG - chr1_3:4279535-4279554 Msa0098350:CDS 35.0%
GCGTATCAATTATTGAGGAA+TGG - chr1_3:4279540-4279559 Msa0098350:CDS 35.0%
!! GGTTTGTTAATTATGACTCC+AGG + chr1_3:4279636-4279655 None:intergenic 35.0%
TGTTTATGAAGGAGTTCCAA+AGG - chr1_3:4279668-4279687 Msa0098350:CDS 35.0%
TTCTTATGACAGGATTACAC+TGG - chr1_3:4279866-4279885 Msa0098350:intron 35.0%
GGAAATAAATCAGCTCTTAC+AGG - chr1_3:4279929-4279948 Msa0098350:intron 35.0%
AATAAATCAGCTCTTACAGG+TGG - chr1_3:4279932-4279951 Msa0098350:intron 35.0%
ATAAATCAGCTCTTACAGGT+GGG - chr1_3:4279933-4279952 Msa0098350:intron 35.0%
! ACGTCTTCAATTTGAAGTGA+CGG + chr1_3:4280126-4280145 None:intergenic 35.0%
CTTCAAATTGAAGACGTGTT+TGG - chr1_3:4280129-4280148 Msa0098350:intron 35.0%
!! TATTTTTGTTCGACACGTGT+GGG + chr1_3:4280158-4280177 None:intergenic 35.0%
!! AAAAGCTTAAGCCTTGTTTG+AGG - chr1_3:4280306-4280325 Msa0098350:CDS 35.0%
AGATCAGATGCATACAAGTA+AGG + chr1_3:4280556-4280575 None:intergenic 35.0%
GAAGAACTACACAGAACAAA+CGG + chr1_3:4280676-4280695 None:intergenic 35.0%
GACTTATGTAATGGTGTAAC+AGG - chr1_3:4280811-4280830 Msa0098350:intron 35.0%
! GGTGTAACAGGTATTTTATC+TGG - chr1_3:4280823-4280842 Msa0098350:intron 35.0%
! GTAACAGGTATTTTATCTGG+AGG - chr1_3:4280826-4280845 Msa0098350:intron 35.0%
GCGTAGATATTGATATCTTC+TGG + chr1_3:4280887-4280906 None:intergenic 35.0%
TATCAATATCTACGCGACAA+CGG - chr1_3:4280892-4280911 Msa0098350:intron 35.0%
AAATGCAGTAGAAAGCAGTT+GGG - chr1_3:4280919-4280938 Msa0098350:intron 35.0%
AGACAGGTATGTAACTAAGA+AGG - chr1_3:4281027-4281046 Msa0098350:intron 35.0%
!!! CAAAGTTTTGAACTACTCCA+TGG + chr1_3:4281113-4281132 None:intergenic 35.0%
GTTAAGGATAGGACTATCAA+TGG - chr1_3:4281479-4281498 Msa0098350:CDS 35.0%
AGGACTATCAATGGTTACTA+TGG - chr1_3:4281488-4281507 Msa0098350:CDS 35.0%
TTACTATGGTTCTCATGTGA+TGG - chr1_3:4281502-4281521 Msa0098350:CDS 35.0%
CAGGATTTGTACCCAAATAT+AGG + chr1_3:4281565-4281584 None:intergenic 35.0%
TGAAGGTGATCTCAATTTCA+AGG + chr1_3:4281621-4281640 None:intergenic 35.0%
TTCAACAGCAGTTAACCAAA+GGG - chr1_3:4281637-4281656 Msa0098350:intron 35.0%
ATGCTGATCTCATTCATTTC+TGG - chr1_3:4281660-4281679 Msa0098350:intron 35.0%
TGCTGATCTCATTCATTTCT+GGG - chr1_3:4281661-4281680 Msa0098350:intron 35.0%
!! TCTCATTCATTTCTGGGATA+AGG - chr1_3:4281667-4281686 Msa0098350:intron 35.0%
!! TTTTGTGCTTCATTTTTCCG+CGG + chr1_3:4281874-4281893 None:intergenic 35.0%
! TGAAGCACAAAAGGAAGTTT+TGG - chr1_3:4281882-4281901 Msa0098350:intron 35.0%
CTGATTGGAAAGCTCTTATT+TGG - chr1_3:4281946-4281965 Msa0098350:intron 35.0%
! GCTCTTATTTGGCATTGAAA+AGG - chr1_3:4281957-4281976 Msa0098350:intron 35.0%
AATCAAGAGAAGTAGTACCA+TGG + chr1_3:4282052-4282071 None:intergenic 35.0%
! TCAGCTTCATCTATCTTTTC+TGG - chr1_3:4282071-4282090 Msa0098350:intron 35.0%
AGTCATGCAAATTCATCACA+AGG + chr1_3:4282161-4282180 None:intergenic 35.0%
!!! AAGACTTTTGAGACACATTG+TGG - chr1_3:4282250-4282269 Msa0098350:intron 35.0%
GATCTCTACTTGATATTGTG+GGG - chr1_3:4282666-4282685 Msa0098350:intron 35.0%
ACATACTTGTTTGTGACAAG+AGG + chr1_3:4282693-4282712 None:intergenic 35.0%
AATACAACCCTATCACTGAA+TGG + chr1_3:4282731-4282750 None:intergenic 35.0%
GGGATTATGGCATTTATAAC+TGG - chr1_3:4282773-4282792 Msa0098350:intron 35.0%
TGTGGAATGTCCAATATGAT+AGG - chr1_3:4282824-4282843 Msa0098350:intron 35.0%
GTGGAATGTCCAATATGATA+GGG - chr1_3:4282825-4282844 Msa0098350:intron 35.0%
! ATTCTGTTGCAAAGTGTCTA+GGG + chr1_3:4282911-4282930 None:intergenic 35.0%
! AATTCTGTTGCAAAGTGTCT+AGG + chr1_3:4282912-4282931 None:intergenic 35.0%
AGGAGAATGAATGAGTGAAG+AGG + chr1_3:4278033-4278052 None:intergenic 40.0%
CATTCTCCTTCCTTCAATCA+TGG - chr1_3:4278044-4278063 Msa0098350:three_prime_UTR 40.0%
AGCAAGGATGTTCAAGATGA+CGG + chr1_3:4278103-4278122 None:intergenic 40.0%
TGGCAATCGGATATAATCTC+CGG + chr1_3:4278151-4278170 None:intergenic 40.0%
CTTGAGATTGAGATGGCAAT+CGG + chr1_3:4278164-4278183 None:intergenic 40.0%
AGTGTCATGAGATAAGAGTG+AGG + chr1_3:4278753-4278772 None:intergenic 40.0%
GCGGTGGTATTTAAAAGCTT+TGG + chr1_3:4278954-4278973 None:intergenic 40.0%
! CTTTTAAATACCACCGCAAG+TGG - chr1_3:4278957-4278976 Msa0098350:intron 40.0%
CTCACTTCTATAGCTGACAT+CGG + chr1_3:4279292-4279311 None:intergenic 40.0%
CTTCCAATGTAGAGAATCCA+AGG - chr1_3:4279610-4279629 Msa0098350:CDS 40.0%
TTAATTATGACTCCAGGCCT+TGG + chr1_3:4279630-4279649 None:intergenic 40.0%
TCATAAACATCACCACCATC+AGG + chr1_3:4279657-4279676 None:intergenic 40.0%
! GATGGTGGTGATGTTTATGA+AGG - chr1_3:4279657-4279676 Msa0098350:CDS 40.0%
ACGTCTTTAGTGTGAAGTGT+CGG + chr1_3:4279725-4279744 None:intergenic 40.0%
! AGTGGGAAAGTTGTTGATAG+TGG - chr1_3:4279956-4279975 Msa0098350:intron 40.0%
GTATACTACACTGATCATGG+AGG - chr1_3:4279998-4280017 Msa0098350:intron 40.0%
!! GTATTTTTGTTCGACACGTG+TGG + chr1_3:4280159-4280178 None:intergenic 40.0%
CTGTGTAGTTCTTCCATGTT+TGG - chr1_3:4280682-4280701 Msa0098350:intron 40.0%
AGAAATTTAGTGCGCGAGTT+TGG + chr1_3:4280789-4280808 None:intergenic 40.0%
GAATCTGGCAGTATCTTTGA+AGG - chr1_3:4280854-4280873 Msa0098350:intron 40.0%
CAAATGCAGTAGAAAGCAGT+TGG - chr1_3:4280918-4280937 Msa0098350:intron 40.0%
AATGCAGTAGAAAGCAGTTG+GGG - chr1_3:4280920-4280939 Msa0098350:intron 40.0%
ACTACTCCATGGTGATTGTA+TGG + chr1_3:4281102-4281121 None:intergenic 40.0%
! CTTATTTGCTAATGTGGTGC+AGG - chr1_3:4281457-4281476 Msa0098350:intron 40.0%
! TGATGGAGTATGGTGATGTA+GGG - chr1_3:4281519-4281538 Msa0098350:CDS 40.0%
CTTTGGTTAACTGCTGTTGA+AGG + chr1_3:4281638-4281657 None:intergenic 40.0%
CTTCAACAGCAGTTAACCAA+AGG - chr1_3:4281636-4281655 Msa0098350:intron 40.0%
TGGTTACTGGATCTTGTTCT+CGG + chr1_3:4281796-4281815 None:intergenic 40.0%
GCGGAAAAATGAAGCACAAA+AGG - chr1_3:4281873-4281892 Msa0098350:intron 40.0%
!! TTTTGGAAGCAATGTCTCAC+AGG - chr1_3:4281899-4281918 Msa0098350:intron 40.0%
GACAACAGTGTGAAACTGAT+TGG - chr1_3:4281931-4281950 Msa0098350:intron 40.0%
! ATCACCACTTGTTGACAACT+GGG - chr1_3:4282014-4282033 Msa0098350:intron 40.0%
!! GAAGTAGTACCATGGTTTTG+AGG + chr1_3:4282044-4282063 None:intergenic 40.0%
!! TTGCTTTTATGCCTAAGCCA+TGG - chr1_3:4282116-4282135 Msa0098350:intron 40.0%
! TGCTTTTATGCCTAAGCCAT+GGG - chr1_3:4282117-4282136 Msa0098350:intron 40.0%
!! CAGTTTTATCATTGCTCCCA+TGG + chr1_3:4282136-4282155 None:intergenic 40.0%
TGTGGATCTCTATCTCAGTA+TGG - chr1_3:4282268-4282287 Msa0098350:intron 40.0%
TGCATTGCAAATGTTCGCAA+AGG + chr1_3:4282311-4282330 None:intergenic 40.0%
TTTGCGAACATTTGCAATGC+AGG - chr1_3:4282310-4282329 Msa0098350:intron 40.0%
AGGAATACAAACCGAGCAAA+TGG - chr1_3:4282330-4282349 Msa0098350:intron 40.0%
TTGGAACACTACTAGGACAT+TGG - chr1_3:4282550-4282569 Msa0098350:intron 40.0%
TGGAACACTACTAGGACATT+GGG - chr1_3:4282551-4282570 Msa0098350:intron 40.0%
CATATTGGACATTCCACAAC+AGG + chr1_3:4282822-4282841 None:intergenic 40.0%
GTCCAATATGATAGGGAACA+AGG - chr1_3:4282832-4282851 Msa0098350:intron 40.0%
GACCTTGTTCCCTATCATAT+TGG + chr1_3:4282837-4282856 None:intergenic 40.0%
TAAGTAGGTAATTGGCAGAC+AGG - chr1_3:4282880-4282899 Msa0098350:CDS 40.0%
! TCAAGATGACGGTGAGAAAG+AGG + chr1_3:4278092-4278111 None:intergenic 45.0%
GCAATCGGATATAATCTCCG+GGG + chr1_3:4278149-4278168 None:intergenic 45.0%
GGCAATCGGATATAATCTCC+GGG + chr1_3:4278150-4278169 None:intergenic 45.0%
! TTCAGGTTCATGGAAGAACC+TGG + chr1_3:4278190-4278209 None:intergenic 45.0%
ATGACAACGTTGAAGGGACT+AGG - chr1_3:4278214-4278233 Msa0098350:three_prime_UTR 45.0%
!!! AGGTGGGCTATTTTACTTGC+TGG - chr1_3:4278234-4278253 Msa0098350:three_prime_UTR 45.0%
GAGAATGGACCCTTCAGATT+AGG - chr1_3:4278985-4279004 Msa0098350:intron 45.0%
AGGCCTTGGATTCTCTACAT+TGG + chr1_3:4279616-4279635 None:intergenic 45.0%
AATGTAGAGAATCCAAGGCC+TGG - chr1_3:4279615-4279634 Msa0098350:CDS 45.0%
AATTACTCACCAAGAACCCC+TGG + chr1_3:4280025-4280044 None:intergenic 45.0%
GCATACAAGTAAGGACCAAC+TGG + chr1_3:4280547-4280566 None:intergenic 45.0%
! TATCTGGAGGCATGTGAATC+TGG - chr1_3:4280839-4280858 Msa0098350:intron 45.0%
! AAGTTGAGTACTCTGGAGGA+GGG + chr1_3:4280973-4280992 None:intergenic 45.0%
! AAGCAAGTTGAGTACTCTGG+AGG + chr1_3:4280977-4280996 None:intergenic 45.0%
! CCTAAGCAAGTTGAGTACTC+TGG + chr1_3:4280980-4280999 None:intergenic 45.0%
! CCAGAGTACTCAACTTGCTT+AGG - chr1_3:4280977-4280996 Msa0098350:intron 45.0%
GTGACCTATACAGCATTGCT+TGG - chr1_3:4280999-4281018 Msa0098350:intron 45.0%
CCATCCAAGCAATGCTGTAT+AGG + chr1_3:4281006-4281025 None:intergenic 45.0%
CCTATACAGCATTGCTTGGA+TGG - chr1_3:4281003-4281022 Msa0098350:intron 45.0%
TGCTAATGTGGTGCAGGTTA+AGG - chr1_3:4281463-4281482 Msa0098350:intron 45.0%
ATGTGGTGCAGGTTAAGGAT+AGG - chr1_3:4281468-4281487 Msa0098350:intron 45.0%
! GGTTCTCATGTGATGGAGTA+TGG - chr1_3:4281509-4281528 Msa0098350:CDS 45.0%
! GTGATGGAGTATGGTGATGT+AGG - chr1_3:4281518-4281537 Msa0098350:CDS 45.0%
GAATGAGATCAGCATCCCTT+TGG + chr1_3:4281655-4281674 None:intergenic 45.0%
GGTTACTGGATCTTGTTCTC+GGG + chr1_3:4281795-4281814 None:intergenic 45.0%
! GATCACCACTTGTTGACAAC+TGG - chr1_3:4282013-4282032 Msa0098350:intron 45.0%
CAATCCCAGTTGTCAACAAG+TGG + chr1_3:4282021-4282040 None:intergenic 45.0%
TATCATTGCTCCCATGGCTT+AGG + chr1_3:4282130-4282149 None:intergenic 45.0%
GGAACACTACTAGGACATTG+GGG - chr1_3:4282552-4282571 Msa0098350:intron 45.0%
TACTAGGACATTGGGGAGTA+GGG - chr1_3:4282559-4282578 Msa0098350:intron 45.0%
GTTGCAGTGGCGTATGAAGT+TGG + chr1_3:4277971-4277990 None:intergenic 50.0%
AAGGTGAGAGGTAGTTGCAG+TGG + chr1_3:4277984-4278003 None:intergenic 50.0%
GACGGTGAGAAAGAGGATAG+TGG + chr1_3:4278085-4278104 None:intergenic 50.0%
AACATCCTTGCTGCTGTCTC+CGG - chr1_3:4278111-4278130 Msa0098350:three_prime_UTR 50.0%
TATAATCTCCGGGGAGGTCA+CGG + chr1_3:4278140-4278159 None:intergenic 50.0%
ATCGGATATAATCTCCGGGG+AGG + chr1_3:4278146-4278165 None:intergenic 50.0%
CTGGAGGCTTGAGATTGAGA+TGG + chr1_3:4278171-4278190 None:intergenic 50.0%
CATCTCAATCTCAAGCCTCC+AGG - chr1_3:4278169-4278188 Msa0098350:three_prime_UTR 50.0%
AGGTTCATGGAAGAACCTGG+AGG + chr1_3:4278187-4278206 None:intergenic 50.0%
ACAACGTTGAAGGGACTAGG+TGG - chr1_3:4278217-4278236 Msa0098350:three_prime_UTR 50.0%
CAACGTTGAAGGGACTAGGT+GGG - chr1_3:4278218-4278237 Msa0098350:three_prime_UTR 50.0%
CCATTCTCATCGTCCACTTG+CGG + chr1_3:4278973-4278992 None:intergenic 50.0%
ACAGGATTACACTGGTGCAG+AGG - chr1_3:4279874-4279893 Msa0098350:intron 50.0%
TACACTGATCATGGAGGTCC+AGG - chr1_3:4280004-4280023 Msa0098350:intron 50.0%
ACACTGATCATGGAGGTCCA+GGG - chr1_3:4280005-4280024 Msa0098350:intron 50.0%
GTCGGCAATAGCCTCAAACA+AGG + chr1_3:4280320-4280339 None:intergenic 50.0%
GTCTCTTCAGGTATGCCAGT+TGG - chr1_3:4280529-4280548 Msa0098350:intron 50.0%
AGTTGGGGAACATATTGCCC+TGG - chr1_3:4280935-4280954 Msa0098350:intron 50.0%
GTTGGGGAACATATTGCCCT+GGG - chr1_3:4280936-4280955 Msa0098350:intron 50.0%
TTGGGGAACATATTGCCCTG+GGG - chr1_3:4280937-4280956 Msa0098350:intron 50.0%
! AGTTGAGTACTCTGGAGGAG+GGG + chr1_3:4280972-4280991 None:intergenic 50.0%
! CAAGTTGAGTACTCTGGAGG+AGG + chr1_3:4280974-4280993 None:intergenic 50.0%
GCATTGCTTGGATGGAAGAC+AGG - chr1_3:4281011-4281030 Msa0098350:intron 50.0%
GGGCATCCGTCAATTGCATT+TGG + chr1_3:4281775-4281794 None:intergenic 50.0%
CTCGACAATGTTAGACCTGC+TGG - chr1_3:4281991-4282010 Msa0098350:intron 50.0%
TCAACAAGTGGTGATCCAGC+AGG + chr1_3:4282009-4282028 None:intergenic 50.0%
CTGGGATTGCCTCAAAACCA+TGG - chr1_3:4282032-4282051 Msa0098350:intron 50.0%
ACTGGTACAAGCTTGTGCTG+AGG + chr1_3:4282362-4282381 None:intergenic 50.0%
TGCAGAGAACTCCAAGGGTT+GGG + chr1_3:4282391-4282410 None:intergenic 50.0%
TTGCAGAGAACTCCAAGGGT+TGG + chr1_3:4282392-4282411 None:intergenic 50.0%
ACCCTTGGAGTTCTCTGCAA+AGG - chr1_3:4282392-4282411 Msa0098350:intron 50.0%
CCCTTTGCAGAGAACTCCAA+GGG + chr1_3:4282396-4282415 None:intergenic 50.0%
CCCTTGGAGTTCTCTGCAAA+GGG - chr1_3:4282393-4282412 Msa0098350:intron 50.0%
CCTTGGAGTTCTCTGCAAAG+GGG - chr1_3:4282394-4282413 Msa0098350:intron 50.0%
CTACTAGGACATTGGGGAGT+AGG - chr1_3:4282558-4282577 Msa0098350:intron 50.0%
TTCCACAACAGGCAGAACTG+TGG + chr1_3:4282811-4282830 None:intergenic 50.0%
TTCTCATCGTCCACTTGCGG+TGG + chr1_3:4278970-4278989 None:intergenic 55.0%
CCGCAAGTGGACGATGAGAA+TGG - chr1_3:4278970-4278989 Msa0098350:intron 55.0%
TCAGCTCTTACAGGTGGGAG+TGG - chr1_3:4279938-4279957 Msa0098350:intron 55.0%
CAGCTCTTACAGGTGGGAGT+GGG - chr1_3:4279939-4279958 Msa0098350:intron 55.0%
CACTGATCATGGAGGTCCAG+GGG - chr1_3:4280006-4280025 Msa0098350:intron 55.0%
! GTTGAGTACTCTGGAGGAGG+GGG + chr1_3:4280971-4280990 None:intergenic 55.0%
! CAGTTCCGCAAAGCACCTGA+GGG - chr1_3:4281844-4281863 Msa0098350:intron 55.0%
GAGAACCCTCAGGTGCTTTG+CGG + chr1_3:4281852-4281871 None:intergenic 55.0%
! TTTTTCCGCGGAGAACCCTC+AGG + chr1_3:4281862-4281881 None:intergenic 55.0%
ACAAACCGAGCAAATGGCCG+AGG - chr1_3:4282336-4282355 Msa0098350:intron 55.0%
ACAAGCTTGTGCTGAGGCCT+CGG + chr1_3:4282356-4282375 None:intergenic 55.0%
CCAAGGGTTGGGAGGAATAC+TGG + chr1_3:4282380-4282399 None:intergenic 55.0%
CCAGTATTCCTCCCAACCCT+TGG - chr1_3:4282377-4282396 Msa0098350:intron 55.0%
AGAGAACTCCAAGGGTTGGG+AGG + chr1_3:4282388-4282407 None:intergenic 55.0%
CCCCTTTGCAGAGAACTCCA+AGG + chr1_3:4282397-4282416 None:intergenic 55.0%
GACCACAGTTCTGCCTGTTG+TGG - chr1_3:4282806-4282825 Msa0098350:intron 55.0%
CATGGAGGTCCAGGGGTTCT+TGG - chr1_3:4280013-4280032 Msa0098350:intron 60.0%
! AGTACTCTGGAGGAGGGGGA+GGG + chr1_3:4280967-4280986 None:intergenic 60.0%
! GCAGTTCCGCAAAGCACCTG+AGG - chr1_3:4281843-4281862 Msa0098350:intron 60.0%
AAGCACCTGAGGGTTCTCCG+CGG - chr1_3:4281854-4281873 Msa0098350:intron 60.0%
TGAGGCCTCGGCCATTTGCT+CGG + chr1_3:4282344-4282363 None:intergenic 60.0%
GGCTACCGGAGACAGCAGCA+AGG + chr1_3:4278119-4278138 None:intergenic 65.0%
! GAGTACTCTGGAGGAGGGGG+AGG + chr1_3:4280968-4280987 None:intergenic 65.0%
TCCGGTAGCCGTGACCTCCC+CGG - chr1_3:4278129-4278148 Msa0098350:three_prime_UTR 70.0%
TCCGGGGAGGTCACGGCTAC+CGG + chr1_3:4278133-4278152 None:intergenic 70.0%
!! GAGGGGGAGGGTACTCCCCA+GGG + chr1_3:4280955-4280974 None:intergenic 70.0%
!! GGAGGGGGAGGGTACTCCCC+AGG + chr1_3:4280956-4280975 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4277934 4283228 4277934 ID=Msa0098350;Name=Msa0098350
chr1_3 mRNA 4277934 4283228 4277934 ID=Msa0098350-mRNA-1;Parent=Msa0098350;Name=Msa0098350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=129|0.85|0.87|1|1|1|8|799|490
chr1_3 exon 4277934 4278915 4277934 ID=Msa0098350-mRNA-1:exon:1423;Parent=Msa0098350-mRNA-1
chr1_3 exon 4279109 4279315 4279109 ID=Msa0098350-mRNA-1:exon:1422;Parent=Msa0098350-mRNA-1
chr1_3 exon 4279474 4279723 4279474 ID=Msa0098350-mRNA-1:exon:1421;Parent=Msa0098350-mRNA-1
chr1_3 exon 4280130 4280329 4280130 ID=Msa0098350-mRNA-1:exon:1420;Parent=Msa0098350-mRNA-1
chr1_3 exon 4280538 4280623 4280538 ID=Msa0098350-mRNA-1:exon:1419;Parent=Msa0098350-mRNA-1
chr1_3 exon 4281128 4281284 4281128 ID=Msa0098350-mRNA-1:exon:1418;Parent=Msa0098350-mRNA-1
chr1_3 exon 4281473 4281637 4281473 ID=Msa0098350-mRNA-1:exon:1417;Parent=Msa0098350-mRNA-1
chr1_3 exon 4282875 4283228 4282875 ID=Msa0098350-mRNA-1:exon:1416;Parent=Msa0098350-mRNA-1
chr1_3 five_prime_UTR 4283100 4283228 4283100 ID=Msa0098350-mRNA-1:five_prime_utr;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4282875 4283099 4282875 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4281473 4281637 4281473 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4281128 4281284 4281128 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4280538 4280623 4280538 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4280130 4280329 4280130 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4279474 4279723 4279474 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4279109 4279315 4279109 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 CDS 4278733 4278915 4278733 ID=Msa0098350-mRNA-1:cds;Parent=Msa0098350-mRNA-1
chr1_3 three_prime_UTR 4277934 4278732 4277934 ID=Msa0098350-mRNA-1:three_prime_utr;Parent=Msa0098350-mRNA-1
Gene Sequence

>Msa0098350

ATGGACTTTTCTCAATTTTCCACTATCCTCTTTCTCACCGTCATCTTGAACATCCTTGCTGCTGTCTCCGGTAGCCGTGACCTCCCCGGAGATTATATCCGATTGCCATCTCAATCTCAAGCCTCCAGGTTCTTCCATGAACCTGAAAATGATGACAACGTTGAAGGGACTAGGTGGGCTATTTTACTTGCTGGTTCTAATGGTTATTGGAATTATAGGCATCAGGCTGATGTTTGTCATGCGTATCAATTATTGAGGAATGGTGGCTTGAAAGAAGAAAACATTATTGTTTTCATGTATGATGATATTGCTTCCAATGTAGAGAATCCAAGGCCTGGAGTCATAATTAACAAACCTGATGGTGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGTGCAGAGGTACATGCTGACAATTTCTATGCTGCTTTACTTGGAAATAAATCAGCTCTTACAGGTGGGAGTGGGAAAGTTGTTGATAGTGGCCCAAATGATCATATTTTTGTATACTACACTGATCATGGAGGTCCAGGGGTTCTTGGTATGCCAGTTGGTCCTTACTTGTATGCATCTGATCTGAATGAAGTCTTGAAGAAAAAACATGCTTCTGGATCATATAAGAGCCTAGTATTTTATCTGGAGGCATGTGAATCTGGCAGTATCTTTGAAGGTCTTCTTCCAGAAGATATCAATATCTACGCGACAACGGCTTCAAATGCAGTAGAAAGCAGTTGGGGAACATATTGCCCTGGGGAGTACCCTCCCCCTCCTCCAGAGTACTCAACTTGCTTAGGTGACCTATACAGCATTGCTTGGATGGAAGACAGGAGTTTGGTAATTGATGTCTTATTTGCTAATGTGGTGCAGGTTAAGGATAGGACTATCAATGGTTACTATGGTTCTCATGTGATGGAGTATGGTGATGTAGGGCTTAGCAACAATCATCTCTTCCTATATTTGGGTACAAATCCTGCCAATGACAATATTAGTTTTGTGGATGAAAGCTCCTTGAAATTGAGATCACCTTCAACAGCAGTTAACCAAAGGGATGCTGATCTCATTCATTTCTGGGATAAGTTCCGCAAAGCACCTGAGGGTTCTCCGCGGAAAAATGAAGCACAAAAGGAAGTTTTGGAAGCAATGTCTCACAGGATGCATGTAGACAACAGTGTGAAACTGATTGGAAAGCTCTTATTTGGCATTGAAAAGGGTACTGAAATGCTCGACAATGTTAGACCTGCTGGATCACCACTTGTTGACAACTGGGATTGCCTCAAAACCATGGTGAAGACTTTTGAGACACATTGTGGATCTCTATCTCAGTATGGTATGAAACATATGAGGTCCTTTGCGAACATTTGCAATGCAGGAATACAAACCGAGCAAATGGCCGAGGCCTCAGCACAAGCTTGTACCAGTATTCCTCCCAACCCTTGGAGTTCTCTGCAAAGGGGTTTCAGTGCATAG
Protein sequence

>Msa0098350

MDFSQFSTILFLTVILNILAAVSGSRDLPGDYIRLPSQSQASRFFHEPENDDNVEGTRWAILLAGSNGYWNYRHQADVCHAYQLLRNGGLKEENIIVFMYDDIASNVENPRPGVIINKPDGGDVYEGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGSYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAVESSWGTYCPGEYPPPPPEYSTCLGDLYSIAWMEDRSLVIDVLFANVVQVKDRTINGYYGSHVMEYGDVGLSNNHLFLYLGTNPANDNISFVDESSLKLRSPSTAVNQRDADLIHFWDKFRKAPEGSPRKNEAQKEVLEAMSHRMHVDNSVKLIGKLLFGIEKGTEMLDNVRPAGSPLVDNWDCLKTMVKTFETHCGSLSQYGMKHMRSFANICNAGIQTEQMAEASAQACTSIPPNPWSSLQRGFSA*