Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148560 | XP_013465905.1 | 94.787 | 422 | 19 | 1 | 9 | 427 | 72 | 493 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148560 | sp|P49044|VPE_VICSA | 85.613 | 424 | 56 | 2 | 9 | 427 | 70 | 493 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148560 | A0A072VED4 | 94.787 | 422 | 19 | 1 | 9 | 427 | 72 | 493 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004970 | Msa0148560 | 0.942488 | 6.575432e-102 | -8.615850e-47 |
| Msa0017640 | Msa0148560 | 0.931712 | 2.515790e-94 | -8.615850e-47 |
| Msa0053020 | Msa0148560 | 0.952424 | 2.496188e-110 | -8.615850e-47 |
| Msa0098350 | Msa0148560 | 0.868885 | 4.679498e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148560 | MtrunA17_Chr1g0151801 | 94.787 | 422 | 19 | 1 | 9 | 427 | 72 | 493 | 0.0 | 796 |
| Msa0148560 | MtrunA17_Chr3g0135491 | 75.708 | 424 | 96 | 3 | 9 | 427 | 63 | 484 | 0.0 | 676 |
| Msa0148560 | MtrunA17_Chr4g0056561 | 58.333 | 408 | 161 | 4 | 9 | 410 | 73 | 477 | 7.64e-173 | 493 |
| Msa0148560 | MtrunA17_Chr7g0248651 | 50.481 | 416 | 191 | 5 | 9 | 413 | 61 | 472 | 1.03e-138 | 405 |
| Msa0148560 | MtrunA17_Chr7g0246051 | 58.454 | 207 | 86 | 0 | 9 | 215 | 60 | 266 | 2.12e-84 | 259 |
| Msa0148560 | MtrunA17_Chr7g0226441 | 47.895 | 190 | 87 | 2 | 229 | 410 | 13 | 198 | 5.75e-54 | 178 |
| Msa0148560 | MtrunA17_Chr7g0226421 | 65.179 | 112 | 39 | 0 | 9 | 120 | 48 | 159 | 1.89e-46 | 157 |
| Msa0148560 | MtrunA17_Chr7g0246061 | 40.722 | 194 | 108 | 4 | 222 | 413 | 1 | 189 | 4.60e-37 | 134 |
| Msa0148560 | MtrunA17_Chr7g0226431 | 69.014 | 71 | 22 | 0 | 152 | 222 | 1 | 71 | 7.12e-29 | 108 |
| Msa0148560 | MtrunA17_Chr2g0307771 | 28.481 | 158 | 110 | 3 | 9 | 164 | 57 | 213 | 2.67e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0148560 | AT4G32940.1 | 72.877 | 424 | 108 | 4 | 9 | 427 | 73 | 494 | 0.0 | 630 |
| Msa0148560 | AT2G25940.1 | 71.226 | 424 | 114 | 4 | 9 | 427 | 58 | 478 | 0.0 | 615 |
| Msa0148560 | AT1G62710.1 | 59.559 | 408 | 154 | 5 | 9 | 410 | 65 | 467 | 1.06e-173 | 495 |
| Msa0148560 | AT3G20210.1 | 51.597 | 407 | 192 | 3 | 9 | 411 | 60 | 465 | 3.86e-138 | 404 |
| Msa0148560 | AT1G08750.3 | 27.848 | 158 | 111 | 3 | 9 | 164 | 41 | 197 | 7.28e-15 | 76.3 |
| Msa0148560 | AT1G08750.2 | 27.848 | 158 | 111 | 3 | 9 | 164 | 41 | 197 | 7.28e-15 | 76.3 |
| Msa0148560 | AT1G08750.1 | 27.848 | 158 | 111 | 3 | 9 | 164 | 41 | 197 | 7.28e-15 | 76.3 |
Find 147 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCATCTCTTCCTATATT+TGG | 0.063831 | 1_4:-8933156 | Msa0148560:CDS |
| GAGCTCAATTACTATGATTT+TGG | 0.156079 | 1_4:+8932087 | None:intergenic |
| ATGCTGATCTCATTCATTTC+TGG | 0.156966 | 1_4:-8933046 | Msa0148560:CDS |
| CTGATTGGAAAGCTCTTATT+TGG | 0.175472 | 1_4:-8932760 | Msa0148560:CDS |
| AAAATAATTTCAAGGGATTA+TGG | 0.245835 | 1_4:-8931945 | Msa0148560:three_prime_UTR |
| ATGATGATGCTGTATATATT+TGG | 0.250928 | 1_4:-8931712 | Msa0148560:three_prime_UTR |
| GGAAATAAATCAGCTCTTAC+AGG | 0.282325 | 1_4:-8934776 | Msa0148560:CDS |
| GACCTTGTTCCCTATCATAT+TGG | 0.296528 | 1_4:+8931871 | None:intergenic |
| AATTTCTATGCTGCTTTACT+TGG | 0.313296 | 1_4:-8934797 | Msa0148560:CDS |
| TGAAGCACAAAAGGAAGTTT+TGG | 0.318946 | 1_4:-8932824 | Msa0148560:CDS |
| GATCACCACTTGTTGACAAC+TGG | 0.329432 | 1_4:-8932693 | Msa0148560:CDS |
| TAATAGTGTAAGTAGGTAAT+TGG | 0.333430 | 1_4:-8931833 | Msa0148560:three_prime_UTR |
| TATCTGGAGGCATGTGAATC+TGG | 0.334996 | 1_4:-8933867 | Msa0148560:CDS |
| CATGGAGGTCCAGGGGTTCT+TGG | 0.340017 | 1_4:-8934692 | Msa0148560:intron |
| AATCATCTCTTCCTATATTT+GGG | 0.340373 | 1_4:-8933155 | Msa0148560:CDS |
| ACTCCATTGCCATATCTCTT+TGG | 0.352130 | 1_4:+8935788 | None:intergenic |
| TGCTAATGTGGTGCAGGTTA+AGG | 0.359305 | 1_4:-8933243 | Msa0148560:CDS |
| TGCTGATCTCATTCATTTCT+GGG | 0.362031 | 1_4:-8933045 | Msa0148560:CDS |
| CATGATTCTGTAAATACAAT+TGG | 0.366402 | 1_4:-8932174 | Msa0148560:three_prime_UTR |
| CAGGATTTGTACCCAAATAT+AGG | 0.367367 | 1_4:+8933144 | None:intergenic |
| CCAAGGGTTGGCAGGAATAC+TGG | 0.368859 | 1_4:+8932328 | None:intergenic |
| GGTTCTCATGTGATGGAGTA+TGG | 0.388016 | 1_4:-8933197 | Msa0148560:CDS |
| GCTCTTATTTGGCATTGAAA+AGG | 0.393897 | 1_4:-8932749 | Msa0148560:CDS |
| TCTCATTCATTTCTGGGATA+AGG | 0.394878 | 1_4:-8933039 | Msa0148560:intron |
| GCGTAGATATTGATATCTTC+TGG | 0.396831 | 1_4:+8933822 | None:intergenic |
| CCCTTGGAGTTCTCTGCAAA+GGG | 0.400932 | 1_4:-8932312 | Msa0148560:CDS |
| TTACACTTAATACAAATTGT+TGG | 0.402400 | 1_4:+8931508 | None:intergenic |
| AGGACTATCAATGGTTACTA+TGG | 0.412584 | 1_4:-8933218 | Msa0148560:CDS |
| TGGAACACTACTAGGACATT+GGG | 0.413330 | 1_4:-8932154 | Msa0148560:three_prime_UTR |
| CTCGACAATGTTAGACCTGC+TGG | 0.413552 | 1_4:-8932715 | Msa0148560:CDS |
| TTTGTATACTACACTGATCA+TGG | 0.415438 | 1_4:-8934710 | Msa0148560:CDS |
| CCATCCAAGCAATGCTGTAT+AGG | 0.421967 | 1_4:+8933703 | None:intergenic |
| TAACAGCATAATTATGTTGT+TGG | 0.428144 | 1_4:+8931559 | None:intergenic |
| TGTGGATCTCTATCTCAGTA+TGG | 0.435172 | 1_4:-8932437 | Msa0148560:CDS |
| CACAAAACTAATATTGTCAT+TGG | 0.435815 | 1_4:+8933121 | None:intergenic |
| TTAATTATGACTCCAGGCCT+TGG | 0.438134 | 1_4:+8935078 | None:intergenic |
| CTCTTATTTGGCATTGAAAA+GGG | 0.444223 | 1_4:-8932748 | Msa0148560:CDS |
| AATACAATTGGAACACTACT+AGG | 0.446735 | 1_4:-8932162 | Msa0148560:three_prime_UTR |
| CTACTAGGACATTGGGGAGT+AGG | 0.452123 | 1_4:-8932147 | Msa0148560:three_prime_UTR |
| TGAGGCCTCGGCCATTTGCT+CGG | 0.452146 | 1_4:+8932364 | None:intergenic |
| CCTATACAGCATTGCTTGGA+TGG | 0.453083 | 1_4:-8933703 | Msa0148560:CDS |
| GTCTCTTCAGGTATGCCAGT+TGG | 0.457359 | 1_4:-8934177 | Msa0148560:intron |
| TACACTGATCATGGAGGTCC+AGG | 0.458300 | 1_4:-8934701 | Msa0148560:CDS |
| ACAAGCTTGTGCTGAGGCCT+CGG | 0.460376 | 1_4:+8932352 | None:intergenic |
| TGAAGGTGATCTCAATTTCA+AGG | 0.461933 | 1_4:+8933088 | None:intergenic |
| GTCATGCGTATCAATTATTG+AGG | 0.462318 | 1_4:-8935170 | Msa0148560:CDS |
| CATATTGGACATTCCACAAC+AGG | 0.464539 | 1_4:+8931886 | None:intergenic |
| TACTAGGACATTGGGGAGTA+GGG | 0.467212 | 1_4:-8932146 | Msa0148560:three_prime_UTR |
| TTGGAACACTACTAGGACAT+TGG | 0.467994 | 1_4:-8932155 | Msa0148560:three_prime_UTR |
| AATTCTGTTGCAAAGTGTCT+AGG | 0.469631 | 1_4:+8931796 | None:intergenic |
| CTTATTTGCTAATGTGGTGC+AGG | 0.471890 | 1_4:-8933249 | Msa0148560:CDS |
| GCTAGTCCTCCAAAGAGATA+TGG | 0.471930 | 1_4:-8935797 | Msa0148560:CDS |
| TTTGCAAACATCTGCAATGC+AGG | 0.473589 | 1_4:-8932395 | Msa0148560:CDS |
| CTTTGGTTAACTGCTGTTGA+AGG | 0.474696 | 1_4:+8933071 | None:intergenic |
| TGTGGAATGTCCAATATGAT+AGG | 0.476129 | 1_4:-8931881 | Msa0148560:three_prime_UTR |
| AAACTAATATTGTCATTGGC+AGG | 0.480772 | 1_4:+8933125 | None:intergenic |
| GAATGAGATCAGCATCCCTT+TGG | 0.480791 | 1_4:+8933054 | None:intergenic |
| CCAGAGTACTCAACTTGCTT+AGG | 0.481337 | 1_4:-8933729 | Msa0148560:CDS |
| GCATACAAGTAAGGACCAAC+TGG | 0.486355 | 1_4:+8934162 | None:intergenic |
| TGATCTCTACTTGATATTGT+GGG | 0.489618 | 1_4:-8932040 | Msa0148560:three_prime_UTR |
| TAAGTAGGTAATTGGCAGAC+AGG | 0.492905 | 1_4:-8931825 | Msa0148560:three_prime_UTR |
| TGATGTCTTATTTGCTAATG+TGG | 0.492908 | 1_4:-8933255 | Msa0148560:CDS |
| ATGATCTCTACTTGATATTG+TGG | 0.495704 | 1_4:-8932041 | Msa0148560:three_prime_UTR |
| TCATAAACATCACCACCATC+AGG | 0.496461 | 1_4:+8935051 | None:intergenic |
| AGGAATACAAACCGAGCAAA+TGG | 0.496796 | 1_4:-8932375 | Msa0148560:CDS |
| GTTGAGTACTCTGGAGGAGG+GGG | 0.498780 | 1_4:+8933738 | None:intergenic |
| GTGACCTATACAGCATTGCT+TGG | 0.499223 | 1_4:-8933707 | Msa0148560:CDS |
| AGATCAGATGCATACAAGTA+AGG | 0.499897 | 1_4:+8934153 | None:intergenic |
| AAATGCAGTAGAAAGCAGTT+GGG | 0.502368 | 1_4:-8933787 | Msa0148560:CDS |
| CCAGTATTCCTGCCAACCCT+TGG | 0.503066 | 1_4:-8932328 | Msa0148560:CDS |
| ATCACCACTTGTTGACAACT+GGG | 0.503223 | 1_4:-8932692 | Msa0148560:CDS |
| GTGATGGAGTATGGTGATGT+AGG | 0.504095 | 1_4:-8933188 | Msa0148560:CDS |
| AGAGAACTCCAAGGGTTGGC+AGG | 0.504101 | 1_4:+8932320 | None:intergenic |
| CAAATGCAGTAGAAAGCAGT+TGG | 0.506782 | 1_4:-8933788 | Msa0148560:CDS |
| CCATTGCCATATCTCTTTGG+AGG | 0.507179 | 1_4:+8935791 | None:intergenic |
| GACAACAGTGTGAAACTGAT+TGG | 0.509576 | 1_4:-8932775 | Msa0148560:CDS |
| GAATCTGGCAGTATCTTTGA+AGG | 0.512925 | 1_4:-8933852 | Msa0148560:CDS |
| GGGATTATGGCATTTATCAC+AGG | 0.513047 | 1_4:-8931932 | Msa0148560:three_prime_UTR |
| GCATTGCTTGGATGGAAGAC+AGG | 0.514105 | 1_4:-8933695 | Msa0148560:intron |
| GGTTTGTTAATTATGACTCC+AGG | 0.517005 | 1_4:+8935072 | None:intergenic |
| GAGAACCCTCAGGTGCTTTG+CGG | 0.521251 | 1_4:+8932857 | None:intergenic |
| ACCCTTGGAGTTCTCTGCAA+AGG | 0.523617 | 1_4:-8932313 | Msa0148560:CDS |
| ACATACTTGTTTGTGACAAG+AGG | 0.524150 | 1_4:+8932015 | None:intergenic |
| AGTTGGGGAACATATTGCCC+TGG | 0.526331 | 1_4:-8933771 | Msa0148560:CDS |
| AATACAACCCTATCACTGAA+TGG | 0.531549 | 1_4:+8931977 | None:intergenic |
| TCAGCTCTTACAGGTGGGAG+TGG | 0.533587 | 1_4:-8934767 | Msa0148560:CDS |
| GACCACAGTTCTGCCTGTTG+TGG | 0.539312 | 1_4:-8931899 | Msa0148560:three_prime_UTR |
| CAAGTTGAGTACTCTGGAGG+AGG | 0.540236 | 1_4:+8933735 | None:intergenic |
| AATGTAGAGAATCCAAGGCC+TGG | 0.541898 | 1_4:-8935090 | Msa0148560:CDS |
| TGCATTGCAGATGTTTGCAA+AGG | 0.543836 | 1_4:+8932397 | None:intergenic |
| CCTAAGCAAGTTGAGTACTC+TGG | 0.544668 | 1_4:+8933729 | None:intergenic |
| GTTGGGGAACATATTGCCCT+GGG | 0.545583 | 1_4:-8933770 | Msa0148560:CDS |
| ATTCTGTTGCAAAGTGTCTA+GGG | 0.556510 | 1_4:+8931797 | None:intergenic |
| TTGCAGAGAACTCCAAGGGT+TGG | 0.556923 | 1_4:+8932316 | None:intergenic |
| AGTTGAGTACTCTGGAGGAG+GGG | 0.559521 | 1_4:+8933737 | None:intergenic |
| GTTAAGGATAGGACTATCAA+TGG | 0.561264 | 1_4:-8933227 | Msa0148560:CDS |
| AGGCCTTGGATTCTCTACAT+TGG | 0.562654 | 1_4:+8935092 | None:intergenic |
| AGTGGGAAAGTTGTTGATAG+TGG | 0.565083 | 1_4:-8934749 | Msa0148560:CDS |
| GCGTATCAATTATTGAGGAA+TGG | 0.567662 | 1_4:-8935165 | Msa0148560:CDS |
| TTCTTATGACAGGATTACAC+TGG | 0.570349 | 1_4:-8934839 | Msa0148560:intron |
| GTCATAATTAACAAACCTGA+TGG | 0.573212 | 1_4:-8935066 | Msa0148560:CDS |
| AATTACTCACCAAGAACCCC+TGG | 0.573730 | 1_4:+8934683 | None:intergenic |
| GCAGTTCCGCAAAGCACCTG+AGG | 0.577006 | 1_4:-8932863 | Msa0148560:intron |
| TTCAACAGCAGTTAACCAAA+GGG | 0.582658 | 1_4:-8933069 | Msa0148560:CDS |
| AAGTTGAGTACTCTGGAGGA+GGG | 0.582976 | 1_4:+8933736 | None:intergenic |
| TCAACAAGTGGTGATCCAGC+AGG | 0.583241 | 1_4:+8932700 | None:intergenic |
| ATGTGGTGCAGGTTAAGGAT+AGG | 0.583690 | 1_4:-8933238 | Msa0148560:CDS |
| CTTCCAATGTAGAGAATCCA+AGG | 0.584961 | 1_4:-8935095 | Msa0148560:CDS |
| ACAAACCGAGCAAATGGCCG+AGG | 0.586423 | 1_4:-8932369 | Msa0148560:CDS |
| TTACTATGGTTCTCATGTGA+TGG | 0.587089 | 1_4:-8933204 | Msa0148560:CDS |
| AATAAATCAGCTCTTACAGG+TGG | 0.589532 | 1_4:-8934773 | Msa0148560:CDS |
| TGATGGAGTATGGTGATGTA+GGG | 0.594785 | 1_4:-8933187 | Msa0148560:CDS |
| ACACTGATCATGGAGGTCCA+GGG | 0.595033 | 1_4:-8934700 | Msa0148560:CDS |
| ATTATGGCATTTATCACAGG+AGG | 0.599193 | 1_4:-8931929 | Msa0148560:three_prime_UTR |
| CCCTTTGCAGAGAACTCCAA+GGG | 0.601430 | 1_4:+8932312 | None:intergenic |
| CAAAGGCTTTAATATGTCAC+CGG | 0.602462 | 1_4:+8932115 | None:intergenic |
| AGTATGGTATGAAACATATG+AGG | 0.602512 | 1_4:-8932421 | Msa0148560:CDS |
| CAGCTCTTACAGGTGGGAGT+GGG | 0.602741 | 1_4:-8934766 | Msa0148560:CDS |
| CAGTTCCGCAAAGCACCTGA+GGG | 0.606664 | 1_4:-8932862 | Msa0148560:CDS |
| CAATCCCAGTTGTCAACAAG+TGG | 0.612244 | 1_4:+8932688 | None:intergenic |
| TATCAATTATTGAGGAATGG+TGG | 0.612607 | 1_4:-8935162 | Msa0148560:CDS |
| ATACTAAAATAATTGTACAA+AGG | 0.616746 | 1_4:+8931767 | None:intergenic |
| CCCCTTTGCAGAGAACTCCA+AGG | 0.617909 | 1_4:+8932311 | None:intergenic |
| GTCCAATATGATAGGGAACA+AGG | 0.619802 | 1_4:-8931873 | Msa0148560:three_prime_UTR |
| CACTGATCATGGAGGTCCAG+GGG | 0.620699 | 1_4:-8934699 | Msa0148560:CDS |
| GATCTCTACTTGATATTGTG+GGG | 0.621074 | 1_4:-8932039 | Msa0148560:three_prime_UTR |
| CTTCAACAGCAGTTAACCAA+AGG | 0.621499 | 1_4:-8933070 | Msa0148560:CDS |
| TTGTGTGTAATAGTGTAAGT+AGG | 0.633094 | 1_4:-8931840 | Msa0148560:three_prime_UTR |
| TGTTTATGAAGGAGTTCCAA+AGG | 0.634134 | 1_4:-8935037 | Msa0148560:intron |
| CCTTGGAGTTCTCTGCAAAG+GGG | 0.636445 | 1_4:-8932311 | Msa0148560:CDS |
| CTGGGATTGCCTCAAAACCA+TGG | 0.636860 | 1_4:-8932674 | Msa0148560:intron |
| ATAAATCAGCTCTTACAGGT+GGG | 0.637399 | 1_4:-8934772 | Msa0148560:CDS |
| TATCAATATCTACGCGACAA+CGG | 0.638805 | 1_4:-8933814 | Msa0148560:CDS |
| GATGGTGGTGATGTTTATGA+AGG | 0.641773 | 1_4:-8935048 | Msa0148560:CDS |
| GTGGAATGTCCAATATGATA+GGG | 0.649089 | 1_4:-8931880 | Msa0148560:three_prime_UTR |
| ATAATTAACAAACCTGATGG+TGG | 0.650511 | 1_4:-8935063 | Msa0148560:CDS |
| ACAGGATTACACTGGTGCAG+AGG | 0.651826 | 1_4:-8934831 | Msa0148560:intron |
| AATGCAGTAGAAAGCAGTTG+GGG | 0.656559 | 1_4:-8933786 | Msa0148560:CDS |
| CCTCCAAAGAGATATGGCAA+TGG | 0.658786 | 1_4:-8935791 | Msa0148560:CDS |
| AAGCAAGTTGAGTACTCTGG+AGG | 0.665445 | 1_4:+8933732 | None:intergenic |
| ACTGGTACAAGCTTGTGCTG+AGG | 0.694000 | 1_4:+8932346 | None:intergenic |
| TTATGGCATTTATCACAGGA+GGG | 0.694964 | 1_4:-8931928 | Msa0148560:three_prime_UTR |
| GGAACACTACTAGGACATTG+GGG | 0.694977 | 1_4:-8932153 | Msa0148560:three_prime_UTR |
| TTCCACAACAGGCAGAACTG+TGG | 0.706328 | 1_4:+8931897 | None:intergenic |
| GTATACTACACTGATCATGG+AGG | 0.754047 | 1_4:-8934707 | Msa0148560:CDS |
| AAGCACCTGAGGGTTCTCCG+CGG | 0.755716 | 1_4:-8932852 | Msa0148560:CDS |
| TTGGGGAACATATTGCCCTG+GGG | 0.755738 | 1_4:-8933769 | Msa0148560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTCAAAATTGTATTTAT+TGG | - | chr1_4:8933020-8933039 | Msa0148560:intron | 10.0% |
| !! | ATACAAAAATATGATCATTT+GGG | + | chr1_4:8932572-8932591 | None:intergenic | 15.0% |
| !! | TATACAAAAATATGATCATT+TGG | + | chr1_4:8932573-8932592 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTGACTTATGTAA+TGG | - | chr1_4:8933391-8933410 | Msa0148560:intron | 15.0% |
| !!! | AGTTTGTTTTTTATTGTATT+AGG | - | chr1_4:8934006-8934025 | Msa0148560:intron | 15.0% |
| !! | GACTTTACATTAAAAAAATA+TGG | - | chr1_4:8934766-8934785 | Msa0148560:CDS | 15.0% |
| !! | ATACTAAAATAATTGTACAA+AGG | + | chr1_4:8935531-8935550 | None:intergenic | 15.0% |
| !! | TTAGAAAAATTAAGCTAAAA+AGG | + | chr1_4:8935665-8935684 | None:intergenic | 15.0% |
| !!! | ACTTATAATTTAAAGTCAAC+TGG | - | chr1_4:8931846-8931865 | Msa0148560:three_prime_UTR | 20.0% |
| !!! | ACATTCAACTATTTTCATTT+TGG | + | chr1_4:8931907-8931926 | None:intergenic | 20.0% |
| !! | AATGAAAATAGTTGAATGTA+TGG | - | chr1_4:8931908-8931927 | Msa0148560:three_prime_UTR | 20.0% |
| !! | ATGAAAATAGTTGAATGTAT+GGG | - | chr1_4:8931909-8931928 | Msa0148560:three_prime_UTR | 20.0% |
| !! | TTGAAAAACAATTTATGTAC+AGG | - | chr1_4:8931939-8931958 | Msa0148560:three_prime_UTR | 20.0% |
| !! | TGAAAAACAATTTATGTACA+GGG | - | chr1_4:8931940-8931959 | Msa0148560:three_prime_UTR | 20.0% |
| !! | TTGAATATTATCACATGTAT+CGG | + | chr1_4:8932775-8932794 | None:intergenic | 20.0% |
| !! | GAAATAATTAAATCCAAACA+TGG | + | chr1_4:8933287-8933306 | None:intergenic | 20.0% |
| !! | TGTTTGGATTTAATTATTTC+AGG | - | chr1_4:8933287-8933306 | Msa0148560:intron | 20.0% |
| !!! | TTTTTATTGTATTAGGAGTT+TGG | - | chr1_4:8934013-8934032 | Msa0148560:intron | 20.0% |
| !! | TTGCAAGAAAAATAATTTCA+AGG | - | chr1_4:8935342-8935361 | Msa0148560:intron | 20.0% |
| !! | TGCAAGAAAAATAATTTCAA+GGG | - | chr1_4:8935343-8935362 | Msa0148560:intron | 20.0% |
| !! | AAAATAATTTCAAGGGATTA+TGG | - | chr1_4:8935350-8935369 | Msa0148560:intron | 20.0% |
| !! | TTACACTTAATACAAATTGT+TGG | + | chr1_4:8935790-8935809 | None:intergenic | 20.0% |
| ! | TGAAAATAGTTGAATGTATG+GGG | - | chr1_4:8931910-8931929 | Msa0148560:three_prime_UTR | 25.0% |
| ! | ATTTATGTACAGGGATTAAA+TGG | - | chr1_4:8931949-8931968 | Msa0148560:three_prime_UTR | 25.0% |
| ! | AGATAATGTTGAATTTCAGA+AGG | - | chr1_4:8931986-8932005 | Msa0148560:three_prime_UTR | 25.0% |
| !! | ACTAAAATTGACTTTACCTT+TGG | + | chr1_4:8932277-8932296 | None:intergenic | 25.0% |
| ! | AGCTATTGAATGTAACAATA+TGG | + | chr1_4:8932359-8932378 | None:intergenic | 25.0% |
| !! | AAACTTTTTGATGAAAGACA+TGG | - | chr1_4:8932653-8932672 | Msa0148560:intron | 25.0% |
| ! | TAAGTTGTTTGTATGTGTTT+AGG | - | chr1_4:8932866-8932885 | Msa0148560:intron | 25.0% |
| ! | ACAATAAACACACTATTTGT+CGG | + | chr1_4:8932927-8932946 | None:intergenic | 25.0% |
| !! | TTTGATTGAATTGTGTTTTG+TGG | - | chr1_4:8932955-8932974 | Msa0148560:intron | 25.0% |
| !! | TATTTCATTCCAACTGTTTT+TGG | + | chr1_4:8933002-8933021 | None:intergenic | 25.0% |
| !! | GTTCCTTTCTATTTCTTATT+TGG | - | chr1_4:8933096-8933115 | Msa0148560:CDS | 25.0% |
| ! | AGACCAAATAAGAAATAGAA+AGG | + | chr1_4:8933102-8933121 | None:intergenic | 25.0% |
| ! | AACTTACCAATTTATATTGC+TGG | + | chr1_4:8933875-8933894 | None:intergenic | 25.0% |
| ! | AATATGTGATTAAGCATTCA+AGG | + | chr1_4:8933977-8933996 | None:intergenic | 25.0% |
| ! | AATCATCTCTTCCTATATTT+GGG | - | chr1_4:8934140-8934159 | Msa0148560:CDS | 25.0% |
| ! | CACAAAACTAATATTGTCAT+TGG | + | chr1_4:8934177-8934196 | None:intergenic | 25.0% |
| !!! | CAATGACAATATTAGTTTTG+TGG | - | chr1_4:8934175-8934194 | Msa0148560:intron | 25.0% |
| ! | TTACGTTTAATTGAAATGCA+CGG | + | chr1_4:8934330-8934349 | None:intergenic | 25.0% |
| !! | AACCAGATATTGAGTATTTT+TGG | - | chr1_4:8934400-8934419 | Msa0148560:intron | 25.0% |
| ! | TGAACAAAAAAAGCAGATTA+AGG | + | chr1_4:8934816-8934835 | None:intergenic | 25.0% |
| !!! | TTAATCTGCTTTTTTTGTTC+AGG | - | chr1_4:8934815-8934834 | Msa0148560:CDS | 25.0% |
| !! | TTTTACAAAGTGCACATTTT+AGG | + | chr1_4:8935025-8935044 | None:intergenic | 25.0% |
| ! | CATGATTCTGTAAATACAAT+TGG | - | chr1_4:8935121-8935140 | Msa0148560:CDS | 25.0% |
| !! | TCTCAATTTCTTTTGATAGA+TGG | - | chr1_4:8935229-8935248 | Msa0148560:intron | 25.0% |
| !! | TTTTAATCCATTCAGTGATA+GGG | - | chr1_4:8935311-8935330 | Msa0148560:intron | 25.0% |
| ! | TAATAGTGTAAGTAGGTAAT+TGG | - | chr1_4:8935462-8935481 | Msa0148560:intron | 25.0% |
| !! | ATGATGATGCTGTATATATT+TGG | - | chr1_4:8935583-8935602 | Msa0148560:intron | 25.0% |
| ! | TAACAGCATAATTATGTTGT+TGG | + | chr1_4:8935739-8935758 | None:intergenic | 25.0% |
| !!! | TTTTGGCTTAATTGCATGTT+TGG | + | chr1_4:8931645-8931664 | None:intergenic | 30.0% |
| TATCAATTATTGAGGAATGG+TGG | - | chr1_4:8932133-8932152 | Msa0148560:three_prime_UTR | 30.0% | |
| GTCATAATTAACAAACCTGA+TGG | - | chr1_4:8932229-8932248 | Msa0148560:three_prime_UTR | 30.0% | |
| ATAATTAACAAACCTGATGG+TGG | - | chr1_4:8932232-8932251 | Msa0148560:three_prime_UTR | 30.0% | |
| !! | TAAGAGCTTTTTCTTATGAC+AGG | - | chr1_4:8932446-8932465 | Msa0148560:CDS | 30.0% |
| !! | AATTTCTATGCTGCTTTACT+TGG | - | chr1_4:8932498-8932517 | Msa0148560:intron | 30.0% |
| TTTGTATACTACACTGATCA+TGG | - | chr1_4:8932585-8932604 | Msa0148560:intron | 30.0% | |
| TAACACTAACATATCGACAT+TGG | + | chr1_4:8932822-8932841 | None:intergenic | 30.0% | |
| CACAATAAACCAAAAACAGT+TGG | - | chr1_4:8932990-8933009 | Msa0148560:intron | 30.0% | |
| ! | ATTTCTTATTTGGTCTCTTC+AGG | - | chr1_4:8933106-8933125 | Msa0148560:CDS | 30.0% |
| TTGAAGAAAAAACATGCTTC+TGG | - | chr1_4:8933175-8933194 | Msa0148560:CDS | 30.0% | |
| ACTATTACTAGTGACTTACT+AGG | + | chr1_4:8933213-8933232 | None:intergenic | 30.0% | |
| ! | AGCTTGCATAATAAACCTTT+TGG | - | chr1_4:8933331-8933350 | Msa0148560:intron | 30.0% |
| !! | TTAGTTTGTCTTCAACCAAA+AGG | + | chr1_4:8933349-8933368 | None:intergenic | 30.0% |
| TTATAACCATACAATCACCA+TGG | - | chr1_4:8933682-8933701 | Msa0148560:intron | 30.0% | |
| TTTGCACCAGCAATATAAAT+TGG | - | chr1_4:8933866-8933885 | Msa0148560:CDS | 30.0% | |
| CAAGTGAGCAACAATTTATA+AGG | + | chr1_4:8933903-8933922 | None:intergenic | 30.0% | |
| !! | TGATGTCTTATTTGCTAATG+TGG | - | chr1_4:8934040-8934059 | Msa0148560:intron | 30.0% |
| CAATCATCTCTTCCTATATT+TGG | - | chr1_4:8934139-8934158 | Msa0148560:CDS | 30.0% | |
| AAACTAATATTGTCATTGGC+AGG | + | chr1_4:8934173-8934192 | None:intergenic | 30.0% | |
| AAACATCCAAATGCAATTGA+CGG | - | chr1_4:8934355-8934374 | Msa0148560:intron | 30.0% | |
| AATACTCAATATCTGGTTAC+TGG | + | chr1_4:8934398-8934417 | None:intergenic | 30.0% | |
| CACCAAAAATACTCAATATC+TGG | + | chr1_4:8934405-8934424 | None:intergenic | 30.0% | |
| !!! | TGAGTATTTTTGGTGTTCAT+TGG | - | chr1_4:8934410-8934429 | Msa0148560:intron | 30.0% |
| ! | CTCTTATTTGGCATTGAAAA+GGG | - | chr1_4:8934547-8934566 | Msa0148560:intron | 30.0% |
| AGTATGGTATGAAACATATG+AGG | - | chr1_4:8934874-8934893 | Msa0148560:intron | 30.0% | |
| AATACAATTGGAACACTACT+AGG | - | chr1_4:8935133-8935152 | Msa0148560:CDS | 30.0% | |
| ! | CTATGATTTTGGATGAACAA+AGG | + | chr1_4:8935200-8935219 | None:intergenic | 30.0% |
| ! | GAGCTCAATTACTATGATTT+TGG | + | chr1_4:8935211-8935230 | None:intergenic | 30.0% |
| ATGATCTCTACTTGATATTG+TGG | - | chr1_4:8935254-8935273 | Msa0148560:intron | 30.0% | |
| TGATCTCTACTTGATATTGT+GGG | - | chr1_4:8935255-8935274 | Msa0148560:intron | 30.0% | |
| ! | CTTTTAATCCATTCAGTGAT+AGG | - | chr1_4:8935310-8935329 | Msa0148560:intron | 30.0% |
| TTGTGTGTAATAGTGTAAGT+AGG | - | chr1_4:8935455-8935474 | Msa0148560:intron | 30.0% | |
| !! | TTTTTGTTGCTTGCTTCATC+AGG | - | chr1_4:8932093-8932112 | Msa0148560:three_prime_UTR | 35.0% |
| GTCATGCGTATCAATTATTG+AGG | - | chr1_4:8932125-8932144 | Msa0148560:three_prime_UTR | 35.0% | |
| GCGTATCAATTATTGAGGAA+TGG | - | chr1_4:8932130-8932149 | Msa0148560:three_prime_UTR | 35.0% | |
| !! | GGTTTGTTAATTATGACTCC+AGG | + | chr1_4:8932226-8932245 | None:intergenic | 35.0% |
| TGTTTATGAAGGAGTTCCAA+AGG | - | chr1_4:8932258-8932277 | Msa0148560:three_prime_UTR | 35.0% | |
| TTCTTATGACAGGATTACAC+TGG | - | chr1_4:8932456-8932475 | Msa0148560:CDS | 35.0% | |
| GGAAATAAATCAGCTCTTAC+AGG | - | chr1_4:8932519-8932538 | Msa0148560:intron | 35.0% | |
| AATAAATCAGCTCTTACAGG+TGG | - | chr1_4:8932522-8932541 | Msa0148560:intron | 35.0% | |
| ATAAATCAGCTCTTACAGGT+GGG | - | chr1_4:8932523-8932542 | Msa0148560:intron | 35.0% | |
| ! | ACGTCTTCAATTTGAAGTGA+CGG | + | chr1_4:8932715-8932734 | None:intergenic | 35.0% |
| CTTCAAATTGAAGACGTGTT+TGG | - | chr1_4:8932718-8932737 | Msa0148560:CDS | 35.0% | |
| !! | TATTTTTGTTCGACACGTGT+GGG | + | chr1_4:8932747-8932766 | None:intergenic | 35.0% |
| !! | AAAAGCTTAAGCCTTGTTTG+AGG | - | chr1_4:8932895-8932914 | Msa0148560:intron | 35.0% |
| AGATCAGATGCATACAAGTA+AGG | + | chr1_4:8933145-8933164 | None:intergenic | 35.0% | |
| GAAGAACTACACAGAACAAA+CGG | + | chr1_4:8933265-8933284 | None:intergenic | 35.0% | |
| AAAAAATTAGTGCGCGAGTT+TGG | + | chr1_4:8933378-8933397 | None:intergenic | 35.0% | |
| GACTTATGTAATGGTGTAAC+AGG | - | chr1_4:8933400-8933419 | Msa0148560:intron | 35.0% | |
| ! | GGTGTAACAGGTATTTTATC+TGG | - | chr1_4:8933412-8933431 | Msa0148560:intron | 35.0% |
| ! | GTAACAGGTATTTTATCTGG+AGG | - | chr1_4:8933415-8933434 | Msa0148560:intron | 35.0% |
| GCGTAGATATTGATATCTTC+TGG | + | chr1_4:8933476-8933495 | None:intergenic | 35.0% | |
| TATCAATATCTACGCGACAA+CGG | - | chr1_4:8933481-8933500 | Msa0148560:intron | 35.0% | |
| AAATGCAGTAGAAAGCAGTT+GGG | - | chr1_4:8933508-8933527 | Msa0148560:intron | 35.0% | |
| AGACAGGTATGTAACTAAGA+AGG | - | chr1_4:8933616-8933635 | Msa0148560:intron | 35.0% | |
| !!! | CAAAGTTTTGAACTACTCCA+TGG | + | chr1_4:8933702-8933721 | None:intergenic | 35.0% |
| GTTAAGGATAGGACTATCAA+TGG | - | chr1_4:8934068-8934087 | Msa0148560:intron | 35.0% | |
| AGGACTATCAATGGTTACTA+TGG | - | chr1_4:8934077-8934096 | Msa0148560:intron | 35.0% | |
| TTACTATGGTTCTCATGTGA+TGG | - | chr1_4:8934091-8934110 | Msa0148560:intron | 35.0% | |
| CAGGATTTGTACCCAAATAT+AGG | + | chr1_4:8934154-8934173 | None:intergenic | 35.0% | |
| TGAAGGTGATCTCAATTTCA+AGG | + | chr1_4:8934210-8934229 | None:intergenic | 35.0% | |
| TTCAACAGCAGTTAACCAAA+GGG | - | chr1_4:8934226-8934245 | Msa0148560:intron | 35.0% | |
| ATGCTGATCTCATTCATTTC+TGG | - | chr1_4:8934249-8934268 | Msa0148560:intron | 35.0% | |
| TGCTGATCTCATTCATTTCT+GGG | - | chr1_4:8934250-8934269 | Msa0148560:intron | 35.0% | |
| !! | TCTCATTCATTTCTGGGATA+AGG | - | chr1_4:8934256-8934275 | Msa0148560:intron | 35.0% |
| !! | TTTTGTGCTTCATTTTTCCG+CGG | + | chr1_4:8934463-8934482 | None:intergenic | 35.0% |
| ! | TGAAGCACAAAAGGAAGTTT+TGG | - | chr1_4:8934471-8934490 | Msa0148560:intron | 35.0% |
| CTGATTGGAAAGCTCTTATT+TGG | - | chr1_4:8934535-8934554 | Msa0148560:intron | 35.0% | |
| ! | GCTCTTATTTGGCATTGAAA+AGG | - | chr1_4:8934546-8934565 | Msa0148560:intron | 35.0% |
| AATCAAGAGAAGTAGTACCA+TGG | + | chr1_4:8934641-8934660 | None:intergenic | 35.0% | |
| ! | TCAGCTTCATCTATCTTTTC+TGG | - | chr1_4:8934660-8934679 | Msa0148560:intron | 35.0% |
| AGTCATGCAAATTCATCACA+AGG | + | chr1_4:8934750-8934769 | None:intergenic | 35.0% | |
| !!! | AAGACTTTTGAGACACATTG+TGG | - | chr1_4:8934840-8934859 | Msa0148560:intron | 35.0% |
| ! | CAAAGGCTTTAATATGTCAC+CGG | + | chr1_4:8935183-8935202 | None:intergenic | 35.0% |
| GATCTCTACTTGATATTGTG+GGG | - | chr1_4:8935256-8935275 | Msa0148560:intron | 35.0% | |
| ACATACTTGTTTGTGACAAG+AGG | + | chr1_4:8935283-8935302 | None:intergenic | 35.0% | |
| AATACAACCCTATCACTGAA+TGG | + | chr1_4:8935321-8935340 | None:intergenic | 35.0% | |
| ATTATGGCATTTATCACAGG+AGG | - | chr1_4:8935366-8935385 | Msa0148560:intron | 35.0% | |
| TTATGGCATTTATCACAGGA+GGG | - | chr1_4:8935367-8935386 | Msa0148560:intron | 35.0% | |
| TGTGGAATGTCCAATATGAT+AGG | - | chr1_4:8935414-8935433 | Msa0148560:intron | 35.0% | |
| GTGGAATGTCCAATATGATA+GGG | - | chr1_4:8935415-8935434 | Msa0148560:intron | 35.0% | |
| ! | ATTCTGTTGCAAAGTGTCTA+GGG | + | chr1_4:8935501-8935520 | None:intergenic | 35.0% |
| ! | AATTCTGTTGCAAAGTGTCT+AGG | + | chr1_4:8935502-8935521 | None:intergenic | 35.0% |
| ACTCCATTGCCATATCTCTT+TGG | + | chr1_4:8931510-8931529 | None:intergenic | 40.0% | |
| CTCACTTCTATAGCTGACAT+CGG | + | chr1_4:8931881-8931900 | None:intergenic | 40.0% | |
| CTTCCAATGTAGAGAATCCA+AGG | - | chr1_4:8932200-8932219 | Msa0148560:three_prime_UTR | 40.0% | |
| TTAATTATGACTCCAGGCCT+TGG | + | chr1_4:8932220-8932239 | None:intergenic | 40.0% | |
| TCATAAACATCACCACCATC+AGG | + | chr1_4:8932247-8932266 | None:intergenic | 40.0% | |
| ! | GATGGTGGTGATGTTTATGA+AGG | - | chr1_4:8932247-8932266 | Msa0148560:three_prime_UTR | 40.0% |
| ACGTCTTTAGTGTGAAGTGT+CGG | + | chr1_4:8932315-8932334 | None:intergenic | 40.0% | |
| ! | AGTGGGAAAGTTGTTGATAG+TGG | - | chr1_4:8932546-8932565 | Msa0148560:intron | 40.0% |
| GTATACTACACTGATCATGG+AGG | - | chr1_4:8932588-8932607 | Msa0148560:intron | 40.0% | |
| !! | GTATTTTTGTTCGACACGTG+TGG | + | chr1_4:8932748-8932767 | None:intergenic | 40.0% |
| CTGTGTAGTTCTTCCATGTT+TGG | - | chr1_4:8933271-8933290 | Msa0148560:intron | 40.0% | |
| GAATCTGGCAGTATCTTTGA+AGG | - | chr1_4:8933443-8933462 | Msa0148560:intron | 40.0% | |
| CAAATGCAGTAGAAAGCAGT+TGG | - | chr1_4:8933507-8933526 | Msa0148560:intron | 40.0% | |
| AATGCAGTAGAAAGCAGTTG+GGG | - | chr1_4:8933509-8933528 | Msa0148560:intron | 40.0% | |
| ACTACTCCATGGTGATTGTA+TGG | + | chr1_4:8933691-8933710 | None:intergenic | 40.0% | |
| ! | CTTATTTGCTAATGTGGTGC+AGG | - | chr1_4:8934046-8934065 | Msa0148560:intron | 40.0% |
| ! | TGATGGAGTATGGTGATGTA+GGG | - | chr1_4:8934108-8934127 | Msa0148560:CDS | 40.0% |
| CTTTGGTTAACTGCTGTTGA+AGG | + | chr1_4:8934227-8934246 | None:intergenic | 40.0% | |
| CTTCAACAGCAGTTAACCAA+AGG | - | chr1_4:8934225-8934244 | Msa0148560:intron | 40.0% | |
| TGGTTACTGGATCTTGTTCT+CGG | + | chr1_4:8934385-8934404 | None:intergenic | 40.0% | |
| GCGGAAAAATGAAGCACAAA+AGG | - | chr1_4:8934462-8934481 | Msa0148560:intron | 40.0% | |
| !! | TTTTGGAAGCAATGTCTCAC+AGG | - | chr1_4:8934488-8934507 | Msa0148560:intron | 40.0% |
| GACAACAGTGTGAAACTGAT+TGG | - | chr1_4:8934520-8934539 | Msa0148560:intron | 40.0% | |
| ! | ATCACCACTTGTTGACAACT+GGG | - | chr1_4:8934603-8934622 | Msa0148560:intron | 40.0% |
| !! | GAAGTAGTACCATGGTTTTG+AGG | + | chr1_4:8934633-8934652 | None:intergenic | 40.0% |
| !! | TTGCTTTTATGCCTAAGCCA+TGG | - | chr1_4:8934705-8934724 | Msa0148560:CDS | 40.0% |
| ! | TGCTTTTATGCCTAAGCCAT+GGG | - | chr1_4:8934706-8934725 | Msa0148560:CDS | 40.0% |
| !! | CAGTTTTATCATTGCTCCCA+TGG | + | chr1_4:8934725-8934744 | None:intergenic | 40.0% |
| TGTGGATCTCTATCTCAGTA+TGG | - | chr1_4:8934858-8934877 | Msa0148560:intron | 40.0% | |
| TGCATTGCAGATGTTTGCAA+AGG | + | chr1_4:8934901-8934920 | None:intergenic | 40.0% | |
| TTTGCAAACATCTGCAATGC+AGG | - | chr1_4:8934900-8934919 | Msa0148560:intron | 40.0% | |
| AGGAATACAAACCGAGCAAA+TGG | - | chr1_4:8934920-8934939 | Msa0148560:intron | 40.0% | |
| TTGGAACACTACTAGGACAT+TGG | - | chr1_4:8935140-8935159 | Msa0148560:CDS | 40.0% | |
| TGGAACACTACTAGGACATT+GGG | - | chr1_4:8935141-8935160 | Msa0148560:CDS | 40.0% | |
| GGGATTATGGCATTTATCAC+AGG | - | chr1_4:8935363-8935382 | Msa0148560:intron | 40.0% | |
| CATATTGGACATTCCACAAC+AGG | + | chr1_4:8935412-8935431 | None:intergenic | 40.0% | |
| GTCCAATATGATAGGGAACA+AGG | - | chr1_4:8935422-8935441 | Msa0148560:intron | 40.0% | |
| GACCTTGTTCCCTATCATAT+TGG | + | chr1_4:8935427-8935446 | None:intergenic | 40.0% | |
| TAAGTAGGTAATTGGCAGAC+AGG | - | chr1_4:8935470-8935489 | Msa0148560:intron | 40.0% | |
| GCTAGTCCTCCAAAGAGATA+TGG | - | chr1_4:8931498-8931517 | Msa0148560:three_prime_UTR | 45.0% | |
| CCATTGCCATATCTCTTTGG+AGG | + | chr1_4:8931507-8931526 | None:intergenic | 45.0% | |
| CCTCCAAAGAGATATGGCAA+TGG | - | chr1_4:8931504-8931523 | Msa0148560:three_prime_UTR | 45.0% | |
| AGGCCTTGGATTCTCTACAT+TGG | + | chr1_4:8932206-8932225 | None:intergenic | 45.0% | |
| AATGTAGAGAATCCAAGGCC+TGG | - | chr1_4:8932205-8932224 | Msa0148560:three_prime_UTR | 45.0% | |
| AATTACTCACCAAGAACCCC+TGG | + | chr1_4:8932615-8932634 | None:intergenic | 45.0% | |
| GCATACAAGTAAGGACCAAC+TGG | + | chr1_4:8933136-8933155 | None:intergenic | 45.0% | |
| ! | TATCTGGAGGCATGTGAATC+TGG | - | chr1_4:8933428-8933447 | Msa0148560:intron | 45.0% |
| ! | AAGTTGAGTACTCTGGAGGA+GGG | + | chr1_4:8933562-8933581 | None:intergenic | 45.0% |
| ! | AAGCAAGTTGAGTACTCTGG+AGG | + | chr1_4:8933566-8933585 | None:intergenic | 45.0% |
| ! | CCTAAGCAAGTTGAGTACTC+TGG | + | chr1_4:8933569-8933588 | None:intergenic | 45.0% |
| ! | CCAGAGTACTCAACTTGCTT+AGG | - | chr1_4:8933566-8933585 | Msa0148560:intron | 45.0% |
| GTGACCTATACAGCATTGCT+TGG | - | chr1_4:8933588-8933607 | Msa0148560:intron | 45.0% | |
| CCATCCAAGCAATGCTGTAT+AGG | + | chr1_4:8933595-8933614 | None:intergenic | 45.0% | |
| CCTATACAGCATTGCTTGGA+TGG | - | chr1_4:8933592-8933611 | Msa0148560:intron | 45.0% | |
| TGCTAATGTGGTGCAGGTTA+AGG | - | chr1_4:8934052-8934071 | Msa0148560:intron | 45.0% | |
| ATGTGGTGCAGGTTAAGGAT+AGG | - | chr1_4:8934057-8934076 | Msa0148560:intron | 45.0% | |
| ! | GGTTCTCATGTGATGGAGTA+TGG | - | chr1_4:8934098-8934117 | Msa0148560:intron | 45.0% |
| ! | GTGATGGAGTATGGTGATGT+AGG | - | chr1_4:8934107-8934126 | Msa0148560:CDS | 45.0% |
| GAATGAGATCAGCATCCCTT+TGG | + | chr1_4:8934244-8934263 | None:intergenic | 45.0% | |
| GGTTACTGGATCTTGTTCTC+GGG | + | chr1_4:8934384-8934403 | None:intergenic | 45.0% | |
| ! | GATCACCACTTGTTGACAAC+TGG | - | chr1_4:8934602-8934621 | Msa0148560:intron | 45.0% |
| CAATCCCAGTTGTCAACAAG+TGG | + | chr1_4:8934610-8934629 | None:intergenic | 45.0% | |
| TATCATTGCTCCCATGGCTT+AGG | + | chr1_4:8934719-8934738 | None:intergenic | 45.0% | |
| GGAACACTACTAGGACATTG+GGG | - | chr1_4:8935142-8935161 | Msa0148560:CDS | 45.0% | |
| TACTAGGACATTGGGGAGTA+GGG | - | chr1_4:8935149-8935168 | Msa0148560:CDS | 45.0% | |
| !!! | AAAATTTTAAATTTGATTTT+TGG | + | chr1_4:8931662-8931681 | None:intergenic | 5.0% |
| ACAGGATTACACTGGTGCAG+AGG | - | chr1_4:8932464-8932483 | Msa0148560:intron | 50.0% | |
| TACACTGATCATGGAGGTCC+AGG | - | chr1_4:8932594-8932613 | Msa0148560:intron | 50.0% | |
| ACACTGATCATGGAGGTCCA+GGG | - | chr1_4:8932595-8932614 | Msa0148560:intron | 50.0% | |
| GTCGGCAATAGCCTCAAACA+AGG | + | chr1_4:8932909-8932928 | None:intergenic | 50.0% | |
| GTCTCTTCAGGTATGCCAGT+TGG | - | chr1_4:8933118-8933137 | Msa0148560:CDS | 50.0% | |
| AGTTGGGGAACATATTGCCC+TGG | - | chr1_4:8933524-8933543 | Msa0148560:intron | 50.0% | |
| GTTGGGGAACATATTGCCCT+GGG | - | chr1_4:8933525-8933544 | Msa0148560:intron | 50.0% | |
| TTGGGGAACATATTGCCCTG+GGG | - | chr1_4:8933526-8933545 | Msa0148560:intron | 50.0% | |
| ! | AGTTGAGTACTCTGGAGGAG+GGG | + | chr1_4:8933561-8933580 | None:intergenic | 50.0% |
| ! | CAAGTTGAGTACTCTGGAGG+AGG | + | chr1_4:8933563-8933582 | None:intergenic | 50.0% |
| GCATTGCTTGGATGGAAGAC+AGG | - | chr1_4:8933600-8933619 | Msa0148560:intron | 50.0% | |
| GGGCATCCGTCAATTGCATT+TGG | + | chr1_4:8934364-8934383 | None:intergenic | 50.0% | |
| CTCGACAATGTTAGACCTGC+TGG | - | chr1_4:8934580-8934599 | Msa0148560:intron | 50.0% | |
| TCAACAAGTGGTGATCCAGC+AGG | + | chr1_4:8934598-8934617 | None:intergenic | 50.0% | |
| CTGGGATTGCCTCAAAACCA+TGG | - | chr1_4:8934621-8934640 | Msa0148560:intron | 50.0% | |
| ACTGGTACAAGCTTGTGCTG+AGG | + | chr1_4:8934952-8934971 | None:intergenic | 50.0% | |
| TTGCAGAGAACTCCAAGGGT+TGG | + | chr1_4:8934982-8935001 | None:intergenic | 50.0% | |
| ACCCTTGGAGTTCTCTGCAA+AGG | - | chr1_4:8934982-8935001 | Msa0148560:intron | 50.0% | |
| CCCTTTGCAGAGAACTCCAA+GGG | + | chr1_4:8934986-8935005 | None:intergenic | 50.0% | |
| CCCTTGGAGTTCTCTGCAAA+GGG | - | chr1_4:8934983-8935002 | Msa0148560:intron | 50.0% | |
| CCTTGGAGTTCTCTGCAAAG+GGG | - | chr1_4:8934984-8935003 | Msa0148560:intron | 50.0% | |
| CTACTAGGACATTGGGGAGT+AGG | - | chr1_4:8935148-8935167 | Msa0148560:CDS | 50.0% | |
| !! | GGGGAGTAGGGTTTTAGTAC+CGG | - | chr1_4:8935161-8935180 | Msa0148560:CDS | 50.0% |
| TTCCACAACAGGCAGAACTG+TGG | + | chr1_4:8935401-8935420 | None:intergenic | 50.0% | |
| TCAGCTCTTACAGGTGGGAG+TGG | - | chr1_4:8932528-8932547 | Msa0148560:intron | 55.0% | |
| CAGCTCTTACAGGTGGGAGT+GGG | - | chr1_4:8932529-8932548 | Msa0148560:intron | 55.0% | |
| CACTGATCATGGAGGTCCAG+GGG | - | chr1_4:8932596-8932615 | Msa0148560:intron | 55.0% | |
| ! | GTTGAGTACTCTGGAGGAGG+GGG | + | chr1_4:8933560-8933579 | None:intergenic | 55.0% |
| ! | CAGTTCCGCAAAGCACCTGA+GGG | - | chr1_4:8934433-8934452 | Msa0148560:intron | 55.0% |
| GAGAACCCTCAGGTGCTTTG+CGG | + | chr1_4:8934441-8934460 | None:intergenic | 55.0% | |
| ! | TTTTTCCGCGGAGAACCCTC+AGG | + | chr1_4:8934451-8934470 | None:intergenic | 55.0% |
| ACAAACCGAGCAAATGGCCG+AGG | - | chr1_4:8934926-8934945 | Msa0148560:intron | 55.0% | |
| ACAAGCTTGTGCTGAGGCCT+CGG | + | chr1_4:8934946-8934965 | None:intergenic | 55.0% | |
| ! | CCAAGGGTTGGCAGGAATAC+TGG | + | chr1_4:8934970-8934989 | None:intergenic | 55.0% |
| CCAGTATTCCTGCCAACCCT+TGG | - | chr1_4:8934967-8934986 | Msa0148560:intron | 55.0% | |
| ! | AGAGAACTCCAAGGGTTGGC+AGG | + | chr1_4:8934978-8934997 | None:intergenic | 55.0% |
| CCCCTTTGCAGAGAACTCCA+AGG | + | chr1_4:8934987-8935006 | None:intergenic | 55.0% | |
| GACCACAGTTCTGCCTGTTG+TGG | - | chr1_4:8935396-8935415 | Msa0148560:intron | 55.0% | |
| CATGGAGGTCCAGGGGTTCT+TGG | - | chr1_4:8932603-8932622 | Msa0148560:intron | 60.0% | |
| ! | AGTACTCTGGAGGAGGGGGA+GGG | + | chr1_4:8933556-8933575 | None:intergenic | 60.0% |
| ! | GCAGTTCCGCAAAGCACCTG+AGG | - | chr1_4:8934432-8934451 | Msa0148560:intron | 60.0% |
| AAGCACCTGAGGGTTCTCCG+CGG | - | chr1_4:8934443-8934462 | Msa0148560:intron | 60.0% | |
| TGAGGCCTCGGCCATTTGCT+CGG | + | chr1_4:8934934-8934953 | None:intergenic | 60.0% | |
| ! | GAGTACTCTGGAGGAGGGGG+AGG | + | chr1_4:8933557-8933576 | None:intergenic | 65.0% |
| !! | GAGGGGGAGGGTACTCCCCA+GGG | + | chr1_4:8933544-8933563 | None:intergenic | 70.0% |
| !! | GGAGGGGGAGGGTACTCCCC+AGG | + | chr1_4:8933545-8933564 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 8931492 | 8935825 | 8931492 | ID=Msa0148560;Name=Msa0148560 |
| chr1_4 | mRNA | 8931492 | 8935825 | 8931492 | ID=Msa0148560-mRNA-1;Parent=Msa0148560;Name=Msa0148560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.71|0.62|0.87|1|1|8|806|427 |
| chr1_4 | exon | 8931492 | 8932480 | 8931492 | ID=Msa0148560-mRNA-1:exon:3780;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8932675 | 8932881 | 8932675 | ID=Msa0148560-mRNA-1:exon:3779;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8933040 | 8933289 | 8933040 | ID=Msa0148560-mRNA-1:exon:3778;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8933696 | 8933895 | 8933696 | ID=Msa0148560-mRNA-1:exon:3777;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8934104 | 8934189 | 8934104 | ID=Msa0148560-mRNA-1:exon:3776;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8934693 | 8934849 | 8934693 | ID=Msa0148560-mRNA-1:exon:3775;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8935038 | 8935202 | 8935038 | ID=Msa0148560-mRNA-1:exon:3774;Parent=Msa0148560-mRNA-1 |
| chr1_4 | exon | 8935790 | 8935825 | 8935790 | ID=Msa0148560-mRNA-1:exon:3773;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8935790 | 8935825 | 8935790 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8935038 | 8935202 | 8935038 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8934693 | 8934849 | 8934693 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8934104 | 8934189 | 8934104 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8933696 | 8933895 | 8933696 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8933040 | 8933289 | 8933040 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8932675 | 8932881 | 8932675 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | CDS | 8932298 | 8932480 | 8932298 | ID=Msa0148560-mRNA-1:cds;Parent=Msa0148560-mRNA-1 |
| chr1_4 | three_prime_UTR | 8931492 | 8932297 | 8931492 | ID=Msa0148560-mRNA-1:three_prime_utr;Parent=Msa0148560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
