AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017640 MtrunA17_Chr1g0151801 95.132 493 21 1 1 490 1 493 0.0 941
Msa0017640 MtrunA17_Chr3g0135491 72.617 493 121 6 3 490 1 484 0.0 742
Msa0017640 MtrunA17_Chr4g0056561 57.942 447 172 6 33 473 41 477 0.0 528
Msa0017640 MtrunA17_Chr7g0248651 50.905 442 202 5 46 476 35 472 2.04e-151 440
Msa0017640 MtrunA17_Chr7g0246051 57.511 233 99 0 46 278 34 266 2.21e-94 287
Msa0017640 MtrunA17_Chr7g0226421 65.909 132 45 0 52 183 28 159 1.70e-58 190
Msa0017640 MtrunA17_Chr7g0226441 47.895 190 87 2 292 473 13 198 2.80e-53 178
Msa0017640 MtrunA17_Chr7g0246061 40.722 194 108 4 285 476 1 189 1.37e-36 133
Msa0017640 MtrunA17_Chr7g0226431 69.014 71 22 0 215 285 1 71 1.60e-28 108
Msa0017640 MtrunA17_Chr2g0307771 30.409 171 116 3 59 227 44 213 1.65e-21 96.7
Msa0017640 MtrunA17_Chr1g0193781 28.488 172 118 4 59 227 34 203 2.42e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017640 AT4G32940.1 72.611 471 119 6 26 490 28 494 0.0 693
Msa0017640 AT2G25940.1 68.916 489 134 7 7 490 3 478 0.0 677
Msa0017640 AT1G62710.1 60.093 431 161 5 49 473 42 467 0.0 533
Msa0017640 AT3G20210.1 52.681 429 198 3 50 474 38 465 1.30e-152 443
Msa0017640 AT1G08750.3 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0017640 AT1G08750.2 29.050 179 124 3 51 227 20 197 9.55e-22 97.4
Msa0017640 AT1G08750.1 29.050 179 124 3 51 227 20 197 9.55e-22 97.4

Find 178 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCATCTCTTCCTATATT+TGG 0.063831 1_1:+29429394 Msa0017640:CDS
GAGCTCAATTACTATGATTT+TGG 0.156079 1_1:-29430462 None:intergenic
ATGCTGATCTCATTCATTTC+TGG 0.156966 1_1:+29429504 Msa0017640:CDS
CTGATTGGAAAGCTCTTATT+TGG 0.175472 1_1:+29429790 Msa0017640:CDS
TTGCTGGTTCTAATGGTTAT+TGG 0.191155 1_1:+29426103 Msa0017640:CDS
CTAATGGTTATTGGAATTAT+AGG 0.241588 1_1:+29426112 Msa0017640:CDS
AAAATAATTTCAAGGGATTA+TGG 0.245835 1_1:+29430604 Msa0017640:three_prime_UTR
ATGATGATGCTGTATATATT+TGG 0.250928 1_1:+29430837 Msa0017640:three_prime_UTR
GGAAATAAATCAGCTCTTAC+AGG 0.282325 1_1:+29427776 Msa0017640:CDS
GACCTTGTTCCCTATCATAT+TGG 0.296528 1_1:-29430678 None:intergenic
AATTTCTATGCTGCTTTACT+TGG 0.313296 1_1:+29427755 Msa0017640:CDS
TGAAGCACAAAAGGAAGTTT+TGG 0.318946 1_1:+29429726 Msa0017640:CDS
GATCACCACTTGTTGACAAC+TGG 0.329432 1_1:+29429857 Msa0017640:CDS
TAATAGTGTAAGTAGGTAAT+TGG 0.333430 1_1:+29430716 Msa0017640:three_prime_UTR
TATCTGGAGGCATGTGAATC+TGG 0.334996 1_1:+29428683 Msa0017640:CDS
CATGGAGGTCCAGGGGTTCT+TGG 0.340017 1_1:+29427860 Msa0017640:CDS
AATCATCTCTTCCTATATTT+GGG 0.340373 1_1:+29429395 Msa0017640:CDS
GGGATTATGGCATTTATAAC+TGG 0.343812 1_1:+29430617 Msa0017640:three_prime_UTR
CATTCTCCTTCCTTCAATCA+TGG 0.352942 1_1:+29425897 Msa0017640:exon
TGCTAATGTGGTGCAGGTTA+AGG 0.359305 1_1:+29429307 Msa0017640:CDS
TGCTGATCTCATTCATTTCT+GGG 0.362031 1_1:+29429505 Msa0017640:CDS
AGAGAAGATTTAAATAATAA+AGG 0.366081 1_1:-29425853 None:intergenic
CATGATTCTGTAAATACAAT+TGG 0.366402 1_1:+29430375 Msa0017640:three_prime_UTR
CAGGATTTGTACCCAAATAT+AGG 0.367367 1_1:-29429406 None:intergenic
CCAAGGGTTGGGAGGAATAC+TGG 0.377257 1_1:-29430221 None:intergenic
GGTTCTCATGTGATGGAGTA+TGG 0.388016 1_1:+29429353 Msa0017640:CDS
GCTCTTATTTGGCATTGAAA+AGG 0.393897 1_1:+29429801 Msa0017640:CDS
TCTCATTCATTTCTGGGATA+AGG 0.394878 1_1:+29429511 Msa0017640:CDS
GCGTAGATATTGATATCTTC+TGG 0.396831 1_1:-29428728 None:intergenic
CATATTGGACATTCCACAAT+AGG 0.400091 1_1:-29430663 None:intergenic
TGTGGAATGTCCAATATGAT+AGG 0.400654 1_1:+29430668 Msa0017640:three_prime_UTR
TTACACTTAATACAAATTGT+TGG 0.402400 1_1:-29431031 None:intergenic
AGGACTATCAATGGTTACTA+TGG 0.412584 1_1:+29429332 Msa0017640:CDS
TGGAACACTACTAGGACATT+GGG 0.413330 1_1:+29430395 Msa0017640:three_prime_UTR
CTCGACAATGTTAGACCTGC+TGG 0.413552 1_1:+29429835 Msa0017640:CDS
TTTGTATACTACACTGATCA+TGG 0.415438 1_1:+29427842 Msa0017640:CDS
TCCGGGGAGGTCACGGCTAC+CGG 0.417671 1_1:-29425983 None:intergenic
CCATCCAAGCAATGCTGTAT+AGG 0.421967 1_1:-29428847 None:intergenic
CCCTTGGAGTTCTCTACAAA+GGG 0.422032 1_1:+29430237 Msa0017640:CDS
TGTTAGTCTTTATAGTTAGT+TGG 0.433025 1_1:+29430871 Msa0017640:three_prime_UTR
TGTGGATCTCTATCTCAGTA+TGG 0.435172 1_1:+29430112 Msa0017640:CDS
CACAAAACTAATATTGTCAT+TGG 0.435815 1_1:-29429429 None:intergenic
TTAATTATGACTCCAGGCCT+TGG 0.438134 1_1:-29427479 None:intergenic
AACATCCTTGCTGCTGTCTC+CGG 0.438904 1_1:+29425964 Msa0017640:CDS
TAACAGCATAATTATGTTGT+TGG 0.440199 1_1:-29430980 None:intergenic
CTCTTATTTGGCATTGAAAA+GGG 0.444223 1_1:+29429802 Msa0017640:CDS
AATACAATTGGAACACTACT+AGG 0.446735 1_1:+29430387 Msa0017640:three_prime_UTR
CTACTAGGACATTGGGGAGT+AGG 0.452123 1_1:+29430402 Msa0017640:three_prime_UTR
TGAGGCCTCGGCCATTTGCT+CGG 0.452146 1_1:-29430185 None:intergenic
CCTATACAGCATTGCTTGGA+TGG 0.453083 1_1:+29428847 Msa0017640:CDS
GTCTCTTCAGGTATGCCAGT+TGG 0.457359 1_1:+29428373 Msa0017640:intron
TACACTGATCATGGAGGTCC+AGG 0.458300 1_1:+29427851 Msa0017640:CDS
TGTAGAGAACTCCAAGGGTT+GGG 0.459757 1_1:-29430232 None:intergenic
GACGGTGAGAAAGAGGATAG+TGG 0.460059 1_1:-29425935 None:intergenic
ACAAGCTTGTGCTGAGGCCT+CGG 0.460376 1_1:-29430197 None:intergenic
TGAAGGTGATCTCAATTTCA+AGG 0.461933 1_1:-29429462 None:intergenic
GTCATGCGTATCAATTATTG+AGG 0.462318 1_1:+29427387 Msa0017640:CDS
TACTAGGACATTGGGGAGTA+GGG 0.467212 1_1:+29430403 Msa0017640:three_prime_UTR
TTGGAACACTACTAGGACAT+TGG 0.467994 1_1:+29430394 Msa0017640:three_prime_UTR
AATTCTGTTGCAAAGTGTCT+AGG 0.469631 1_1:-29430753 None:intergenic
CTTATTTGCTAATGTGGTGC+AGG 0.471890 1_1:+29429301 Msa0017640:CDS
CTTTGGTTAACTGCTGTTGA+AGG 0.474696 1_1:-29429479 None:intergenic
TGGCAATCGGATATAATCTC+CGG 0.476800 1_1:-29426001 None:intergenic
CATCTCAATCTCAAGCCTCC+AGG 0.478973 1_1:+29426022 Msa0017640:CDS
AAACTAATATTGTCATTGGC+AGG 0.480772 1_1:-29429425 None:intergenic
GAATGAGATCAGCATCCCTT+TGG 0.480791 1_1:-29429496 None:intergenic
CCAGAGTACTCAACTTGCTT+AGG 0.481337 1_1:+29428821 Msa0017640:CDS
GCATACAAGTAAGGACCAAC+TGG 0.486355 1_1:-29428388 None:intergenic
TTTGCGAACATCTGCAATGC+AGG 0.487663 1_1:+29430154 Msa0017640:CDS
TTATTGGAATTATAGGCATC+AGG 0.488640 1_1:+29426119 Msa0017640:CDS
GAAAATGATGACAACGTTGA+AGG 0.488978 1_1:+29426060 Msa0017640:CDS
TGATCTCTACTTGATATTGT+GGG 0.489618 1_1:+29430509 Msa0017640:three_prime_UTR
TAAGTAGGTAATTGGCAGAC+AGG 0.492905 1_1:+29430724 Msa0017640:three_prime_UTR
TGATGTCTTATTTGCTAATG+TGG 0.492908 1_1:+29429295 Msa0017640:CDS
ATGATCTCTACTTGATATTG+TGG 0.495704 1_1:+29430508 Msa0017640:three_prime_UTR
TCATAAACATCACCACCATC+AGG 0.496461 1_1:-29427506 None:intergenic
AGGAATACAAACCGAGCAAA+TGG 0.496796 1_1:+29430174 Msa0017640:CDS
GTTGAGTACTCTGGAGGAGG+GGG 0.498780 1_1:-29428812 None:intergenic
GTGACCTATACAGCATTGCT+TGG 0.499223 1_1:+29428843 Msa0017640:CDS
TGAGAAAAGTCCATGATTGA+AGG 0.499589 1_1:-29425907 None:intergenic
AGATCAGATGCATACAAGTA+AGG 0.499897 1_1:-29428397 None:intergenic
AAATGCAGTAGAAAGCAGTT+GGG 0.502368 1_1:+29428763 Msa0017640:CDS
ATCACCACTTGTTGACAACT+GGG 0.503223 1_1:+29429858 Msa0017640:CDS
GTGATGGAGTATGGTGATGT+AGG 0.504095 1_1:+29429362 Msa0017640:CDS
CAAATGCAGTAGAAAGCAGT+TGG 0.506782 1_1:+29428762 Msa0017640:CDS
GACAACAGTGTGAAACTGAT+TGG 0.509576 1_1:+29429775 Msa0017640:CDS
CCAGTATTCCTCCCAACCCT+TGG 0.511464 1_1:+29430221 Msa0017640:CDS
GAATCTGGCAGTATCTTTGA+AGG 0.512925 1_1:+29428698 Msa0017640:CDS
GCATTGCTTGGATGGAAGAC+AGG 0.514105 1_1:+29428855 Msa0017640:CDS
GGTTTGTTAATTATGACTCC+AGG 0.517005 1_1:-29427485 None:intergenic
GGCAATCGGATATAATCTCC+GGG 0.519142 1_1:-29426000 None:intergenic
GAGAACCCTCAGGTGCTTTG+CGG 0.521251 1_1:-29429693 None:intergenic
TATAATCTCCGGGGAGGTCA+CGG 0.522714 1_1:-29425990 None:intergenic
ACATACTTGTTTGTGACAAG+AGG 0.524150 1_1:-29430534 None:intergenic
AGTTGGGGAACATATTGCCC+TGG 0.526331 1_1:+29428779 Msa0017640:CDS
CTTGAGATTGAGATGGCAAT+CGG 0.526844 1_1:-29426014 None:intergenic
TTCAGGCTCATGGAAGAACC+TGG 0.531469 1_1:-29426040 None:intergenic
AATACAACCCTATCACTGAA+TGG 0.531549 1_1:-29430572 None:intergenic
TCAGCTCTTACAGGTGGGAG+TGG 0.533587 1_1:+29427785 Msa0017640:CDS
GTGGAATGTCCAATATGATA+GGG 0.536486 1_1:+29430669 Msa0017640:three_prime_UTR
CAAGTTGAGTACTCTGGAGG+AGG 0.540236 1_1:-29428815 None:intergenic
TCCGGTAGCCGTGACCTCCC+CGG 0.541628 1_1:+29425982 Msa0017640:CDS
AATGTAGAGAATCCAAGGCC+TGG 0.541898 1_1:+29427467 Msa0017640:CDS
AAAATGATGACAACGTTGAA+GGG 0.542555 1_1:+29426061 Msa0017640:CDS
CCTAAGCAAGTTGAGTACTC+TGG 0.544668 1_1:-29428821 None:intergenic
GTTGGGGAACATATTGCCCT+GGG 0.545583 1_1:+29428780 Msa0017640:CDS
TTGTAGAGAACTCCAAGGGT+TGG 0.547173 1_1:-29430233 None:intergenic
GTTGCAGTGGCGTATGAAGT+TGG 0.550472 1_1:-29425821 None:intergenic
GACCACAGTTCTGCCTATTG+TGG 0.550488 1_1:+29430650 Msa0017640:three_prime_UTR
ATTCTGTTGCAAAGTGTCTA+GGG 0.556510 1_1:-29430752 None:intergenic
TCAAGATGACGGTGAGAAAG+AGG 0.557472 1_1:-29425942 None:intergenic
AGTTGAGTACTCTGGAGGAG+GGG 0.559521 1_1:-29428813 None:intergenic
GTTAAGGATAGGACTATCAA+TGG 0.561264 1_1:+29429323 Msa0017640:CDS
AGGCCTTGGATTCTCTACAT+TGG 0.562654 1_1:-29427465 None:intergenic
AGTGGGAAAGTTGTTGATAG+TGG 0.565083 1_1:+29427803 Msa0017640:CDS
GCGTATCAATTATTGAGGAA+TGG 0.567662 1_1:+29427392 Msa0017640:CDS
AGGAGAATGAATGAGTGAAG+AGG 0.569468 1_1:-29425883 None:intergenic
TTCTTATGACAGGATTACAC+TGG 0.570349 1_1:+29427713 Msa0017640:intron
AGCAAGGATGTTCAAGATGA+CGG 0.570580 1_1:-29425953 None:intergenic
AAAATATCAGTGATCACTAA+GGG 0.571491 1_1:+29430956 Msa0017640:three_prime_UTR
GTCATAATTAACAAACCTGA+TGG 0.573212 1_1:+29427491 Msa0017640:CDS
AATTACTCACCAAGAACCCC+TGG 0.573730 1_1:-29427869 None:intergenic
ATTATGGCATTTATAACTGG+AGG 0.576560 1_1:+29430620 Msa0017640:three_prime_UTR
GCAGTTCCGCAAAGCACCTG+AGG 0.577006 1_1:+29429687 Msa0017640:intron
TTCAACAGCAGTTAACCAAA+GGG 0.582658 1_1:+29429481 Msa0017640:CDS
AAGTTGAGTACTCTGGAGGA+GGG 0.582976 1_1:-29428814 None:intergenic
TCAACAAGTGGTGATCCAGC+AGG 0.583241 1_1:-29429850 None:intergenic
ATGTGGTGCAGGTTAAGGAT+AGG 0.583690 1_1:+29429312 Msa0017640:CDS
CTTCCAATGTAGAGAATCCA+AGG 0.584961 1_1:+29427462 Msa0017640:CDS
ACAAACCGAGCAAATGGCCG+AGG 0.586423 1_1:+29430180 Msa0017640:CDS
TTACTATGGTTCTCATGTGA+TGG 0.587089 1_1:+29429346 Msa0017640:CDS
ACCCTTGGAGTTCTCTACAA+AGG 0.589043 1_1:+29430236 Msa0017640:CDS
AATAAATCAGCTCTTACAGG+TGG 0.589532 1_1:+29427779 Msa0017640:CDS
AAAAGTCCATGATTGAAGGA+AGG 0.592337 1_1:-29425903 None:intergenic
TGATGGAGTATGGTGATGTA+GGG 0.594785 1_1:+29429363 Msa0017640:CDS
ACACTGATCATGGAGGTCCA+GGG 0.595033 1_1:+29427852 Msa0017640:CDS
TGCATTGCAGATGTTCGCAA+AGG 0.599606 1_1:-29430152 None:intergenic
CAAAGGCTTTAATATGTCAC+CGG 0.602462 1_1:-29430434 None:intergenic
AGTATGGTATGAAACATATG+AGG 0.602512 1_1:+29430128 Msa0017640:CDS
CAGCTCTTACAGGTGGGAGT+GGG 0.602741 1_1:+29427786 Msa0017640:CDS
CAGTTCCGCAAAGCACCTGA+GGG 0.606664 1_1:+29429688 Msa0017640:intron
CAATCCCAGTTGTCAACAAG+TGG 0.612244 1_1:-29429862 None:intergenic
CTGGAGGCTTGAGATTGAGA+TGG 0.612586 1_1:-29426021 None:intergenic
TATCAATTATTGAGGAATGG+TGG 0.612607 1_1:+29427395 Msa0017640:CDS
ATGACAACGTTGAAGGGACT+AGG 0.618129 1_1:+29426067 Msa0017640:CDS
GTCCAATATGATAGGGAACA+AGG 0.619802 1_1:+29430676 Msa0017640:three_prime_UTR
CACTGATCATGGAGGTCCAG+GGG 0.620699 1_1:+29427853 Msa0017640:CDS
GATCTCTACTTGATATTGTG+GGG 0.621074 1_1:+29430510 Msa0017640:three_prime_UTR
CTTCAACAGCAGTTAACCAA+AGG 0.621499 1_1:+29429480 Msa0017640:CDS
ATTTAAATAATAAAGGTGAG+AGG 0.628502 1_1:-29425846 None:intergenic
CCCTTTGTAGAGAACTCCAA+GGG 0.628994 1_1:-29430237 None:intergenic
CCCCTTTGTAGAGAACTCCA+AGG 0.630911 1_1:-29430238 None:intergenic
TTGTGTGTAATAGTGTAAGT+AGG 0.633094 1_1:+29430709 Msa0017640:three_prime_UTR
TGTTTATGAAGGAGTTCCAA+AGG 0.634134 1_1:+29427520 Msa0017640:CDS
CTGGGATTGCCTCAAAACCA+TGG 0.636860 1_1:+29429876 Msa0017640:CDS
ACAACGTTGAAGGGACTAGG+TGG 0.636966 1_1:+29426070 Msa0017640:CDS
ATAAATCAGCTCTTACAGGT+GGG 0.637399 1_1:+29427780 Msa0017640:CDS
TATCAATATCTACGCGACAA+CGG 0.638805 1_1:+29428736 Msa0017640:CDS
GATGGTGGTGATGTTTATGA+AGG 0.641773 1_1:+29427509 Msa0017640:CDS
AGAGAACTCCAAGGGTTGGG+AGG 0.643882 1_1:-29430229 None:intergenic
AAGGTGAGAGGTAGTTGCAG+TGG 0.649923 1_1:-29425834 None:intergenic
ATAATTAACAAACCTGATGG+TGG 0.650511 1_1:+29427494 Msa0017640:CDS
TTATGGCATTTATAACTGGA+GGG 0.650588 1_1:+29430621 Msa0017640:three_prime_UTR
CAACGTTGAAGGGACTAGGT+GGG 0.651451 1_1:+29426071 Msa0017640:CDS
ACAGGATTACACTGGTGCAG+AGG 0.651826 1_1:+29427721 Msa0017640:intron
AATGCAGTAGAAAGCAGTTG+GGG 0.656559 1_1:+29428764 Msa0017640:CDS
AAGCAAGTTGAGTACTCTGG+AGG 0.665445 1_1:-29428818 None:intergenic
ATCGGATATAATCTCCGGGG+AGG 0.681142 1_1:-29425996 None:intergenic
CCTTGGAGTTCTCTACAAAG+GGG 0.681345 1_1:+29430238 Msa0017640:CDS
ACTGGTACAAGCTTGTGCTG+AGG 0.694000 1_1:-29430203 None:intergenic
GGAACACTACTAGGACATTG+GGG 0.694977 1_1:+29430396 Msa0017640:three_prime_UTR
AGGCTCATGGAAGAACCTGG+AGG 0.700785 1_1:-29426037 None:intergenic
GGCTACCGGAGACAGCAGCA+AGG 0.718393 1_1:-29425969 None:intergenic
TTCCACAATAGGCAGAACTG+TGG 0.729998 1_1:-29430652 None:intergenic
GTATACTACACTGATCATGG+AGG 0.754047 1_1:+29427845 Msa0017640:CDS
AAGCACCTGAGGGTTCTCCG+CGG 0.755716 1_1:+29429698 Msa0017640:CDS
TTGGGGAACATATTGCCCTG+GGG 0.755738 1_1:+29428781 Msa0017640:CDS
GCAATCGGATATAATCTCCG+GGG 0.767916 1_1:-29425999 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACATAAACTTTTTTTTAA+AGG + chr1_1:29426174-29426193 Msa0017640:intron 10.0%
!! TATTTATTTGTCTATTTAAT+TGG - chr1_1:29426265-29426284 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAACTCA+AGG - chr1_1:29426415-29426434 None:intergenic 10.0%
!! TATTTCAAAATTGTATTTAT+TGG + chr1_1:29428275-29428294 Msa0017640:intron 10.0%
!!! ATACTAAAATAATTTTACAA+AGG - chr1_1:29430785-29430804 None:intergenic 10.0%
!! AGAGAAGATTTAAATAATAA+AGG - chr1_1:29425856-29425875 None:intergenic 15.0%
!!! CAAATAAATACTTTTTTTGA+AGG + chr1_1:29426275-29426294 Msa0017640:intron 15.0%
!! TTTATAAAAACTCAAGTATT+TGG - chr1_1:29426884-29426903 None:intergenic 15.0%
!! ATACAAAAATATGATCATTT+GGG - chr1_1:29427829-29427848 None:intergenic 15.0%
!! TATACAAAAATATGATCATT+TGG - chr1_1:29427830-29427849 None:intergenic 15.0%
!!! ATTTTTTTTGACTTATGTAA+TGG + chr1_1:29428646-29428665 Msa0017640:intron 15.0%
!!! AGTTTGTTTTTTATTGTATT+AGG + chr1_1:29429261-29429280 Msa0017640:intron 15.0%
!! GACTTTACATTAAAAAAATA+TGG + chr1_1:29430021-29430040 Msa0017640:intron 15.0%
!! TTAGAAAAATTAAGCTAAAA+AGG - chr1_1:29430919-29430938 None:intergenic 15.0%
!! ATTTAAATAATAAAGGTGAG+AGG - chr1_1:29425849-29425868 None:intergenic 20.0%
!!! ATGATTTTACCTATTTATGT+TGG - chr1_1:29426324-29426343 None:intergenic 20.0%
!!! ATCTGAGTTTTTATTTTTGT+CGG + chr1_1:29426446-29426465 Msa0017640:intron 20.0%
!! ATAAACTAATAATACAAGTC+TGG + chr1_1:29426512-29426531 Msa0017640:intron 20.0%
!!! GTTATCACTTGATTTTAATT+TGG + chr1_1:29426534-29426553 Msa0017640:intron 20.0%
!!! ACATTTTCATTAATCTGTAT+TGG - chr1_1:29426633-29426652 None:intergenic 20.0%
!!! ACTTATAATTTAAAGTCAAC+TGG + chr1_1:29427109-29427128 Msa0017640:intron 20.0%
!! AATGAAAATAGTTGAATGTA+TGG + chr1_1:29427170-29427189 Msa0017640:intron 20.0%
!! ATGAAAATAGTTGAATGTAT+GGG + chr1_1:29427171-29427190 Msa0017640:intron 20.0%
!! TTGAAAAACAATTTATGTAC+AGG + chr1_1:29427201-29427220 Msa0017640:intron 20.0%
!! TGAAAAACAATTTATGTACA+GGG + chr1_1:29427202-29427221 Msa0017640:intron 20.0%
!! TTGAATATTATCACATGTAT+AGG - chr1_1:29428032-29428051 None:intergenic 20.0%
!! GAAATAATTAAATCCAAACA+TGG - chr1_1:29428542-29428561 None:intergenic 20.0%
!! TGTTTGGATTTAATTATTTC+AGG + chr1_1:29428542-29428561 Msa0017640:intron 20.0%
!! TTGCAAGAAAAATAATTTCA+AGG + chr1_1:29430596-29430615 Msa0017640:three_prime_UTR 20.0%
!! TGCAAGAAAAATAATTTCAA+GGG + chr1_1:29430597-29430616 Msa0017640:three_prime_UTR 20.0%
!! AAAATAATTTCAAGGGATTA+TGG + chr1_1:29430604-29430623 Msa0017640:three_prime_UTR 20.0%
!! TTACACTTAATACAAATTGT+TGG - chr1_1:29431034-29431053 None:intergenic 20.0%
! CTAATGGTTATTGGAATTAT+AGG + chr1_1:29426112-29426131 Msa0017640:CDS 25.0%
!! CTTTAGAAACCAACATAAAT+AGG + chr1_1:29426312-29426331 Msa0017640:intron 25.0%
! AAATCATGAAGTGATTTGAT+TGG + chr1_1:29426337-29426356 Msa0017640:intron 25.0%
!!! TCTGAGTTTTTATTTTTGTC+GGG + chr1_1:29426447-29426466 Msa0017640:intron 25.0%
!!! CTGATATACATGACTTTTTT+TGG - chr1_1:29426684-29426703 None:intergenic 25.0%
! TAACATGTTGATACAATCTT+TGG - chr1_1:29426756-29426775 None:intergenic 25.0%
! TGAAAATAGTTGAATGTATG+GGG + chr1_1:29427172-29427191 Msa0017640:intron 25.0%
! ATTTATGTACAGGGATTAAA+TGG + chr1_1:29427211-29427230 Msa0017640:intron 25.0%
! AGATAATGTTGAATTTCAGA+AGG + chr1_1:29427248-29427267 Msa0017640:intron 25.0%
!! ACTAAAATTGACTTTACCTT+TGG - chr1_1:29427539-29427558 None:intergenic 25.0%
! AGCTATTGAATGTAACAATA+TGG - chr1_1:29427621-29427640 None:intergenic 25.0%
!! AAACTTTTTGATGAAAGACA+TGG + chr1_1:29427910-29427929 Msa0017640:intron 25.0%
! TAAGTTGTTTGTATGTGTTT+AGG + chr1_1:29428121-29428140 Msa0017640:intron 25.0%
! ACAATAAACACACTATTTGT+CGG - chr1_1:29428182-29428201 None:intergenic 25.0%
!! TTTGATTGAATTGTGTTTTG+TGG + chr1_1:29428210-29428229 Msa0017640:intron 25.0%
! TATTTCATTCTAACTGTTCT+TGG - chr1_1:29428257-29428276 None:intergenic 25.0%
! GAACATATATCATTAGTAGA+AGG - chr1_1:29428335-29428354 None:intergenic 25.0%
!! GTTCCTTTCTATTTCTTATT+TGG + chr1_1:29428351-29428370 Msa0017640:intron 25.0%
! AGACCAAATAAGAAATAGAA+AGG - chr1_1:29428357-29428376 None:intergenic 25.0%
! AACTTACCAATTTATATTGC+TGG - chr1_1:29429130-29429149 None:intergenic 25.0%
! AATATGTGATTAAGCATTCA+AGG - chr1_1:29429232-29429251 None:intergenic 25.0%
! AATCATCTCTTCCTATATTT+GGG + chr1_1:29429395-29429414 Msa0017640:CDS 25.0%
! CACAAAACTAATATTGTCAT+TGG - chr1_1:29429432-29429451 None:intergenic 25.0%
!!! CAATGACAATATTAGTTTTG+TGG + chr1_1:29429430-29429449 Msa0017640:CDS 25.0%
! TTACGTTTAATTGAAATGCA+CGG - chr1_1:29429585-29429604 None:intergenic 25.0%
!! AACCAGATATTGAGTATTTT+TGG + chr1_1:29429655-29429674 Msa0017640:intron 25.0%
! TGAACAAAAAAAGCAGATTA+AGG - chr1_1:29430070-29430089 None:intergenic 25.0%
!!! TTAATCTGCTTTTTTTGTTC+AGG + chr1_1:29430069-29430088 Msa0017640:intron 25.0%
!! TTTTACAAAGTGCACATTTT+AGG - chr1_1:29430279-29430298 None:intergenic 25.0%
! CATGATTCTGTAAATACAAT+TGG + chr1_1:29430375-29430394 Msa0017640:three_prime_UTR 25.0%
!! TCTCAATTTCTTTTGATAGA+TGG + chr1_1:29430483-29430502 Msa0017640:three_prime_UTR 25.0%
!! TTTTTAATCCATTCAGTGAT+AGG + chr1_1:29430564-29430583 Msa0017640:three_prime_UTR 25.0%
!! TTTTAATCCATTCAGTGATA+GGG + chr1_1:29430565-29430584 Msa0017640:three_prime_UTR 25.0%
! TAATAGTGTAAGTAGGTAAT+TGG + chr1_1:29430716-29430735 Msa0017640:three_prime_UTR 25.0%
!! ATGATGATGCTGTATATATT+TGG + chr1_1:29430837-29430856 Msa0017640:three_prime_UTR 25.0%
!!! TGTTAGTCTTTATAGTTAGT+TGG + chr1_1:29430871-29430890 Msa0017640:three_prime_UTR 25.0%
! AAAAATATCAGTGATCACTA+AGG + chr1_1:29430955-29430974 Msa0017640:three_prime_UTR 25.0%
! AAAATATCAGTGATCACTAA+GGG + chr1_1:29430956-29430975 Msa0017640:three_prime_UTR 25.0%
! TAACAGCATAATTATGTTGT+TGG - chr1_1:29430983-29431002 None:intergenic 25.0%
AAAATGATGACAACGTTGAA+GGG + chr1_1:29426061-29426080 Msa0017640:CDS 30.0%
!!! ATTTTACTTGCTGGTTCTAA+TGG + chr1_1:29426096-29426115 Msa0017640:CDS 30.0%
TTATTGGAATTATAGGCATC+AGG + chr1_1:29426119-29426138 Msa0017640:CDS 30.0%
AGTAACATCATCAAAGACAA+AGG - chr1_1:29426386-29426405 None:intergenic 30.0%
!!! CTGAGTTTTTATTTTTGTCG+GGG + chr1_1:29426448-29426467 Msa0017640:intron 30.0%
AATTTGGTCTCTATCAGAAT+TGG + chr1_1:29426550-29426569 Msa0017640:intron 30.0%
CGTATATGTTTCACATTCAT+TGG + chr1_1:29426720-29426739 Msa0017640:intron 30.0%
TTGACTAATCCTAATCTGAA+GGG - chr1_1:29426853-29426872 None:intergenic 30.0%
ATTGACTAATCCTAATCTGA+AGG - chr1_1:29426854-29426873 None:intergenic 30.0%
TATCAATTATTGAGGAATGG+TGG + chr1_1:29427395-29427414 Msa0017640:CDS 30.0%
GTCATAATTAACAAACCTGA+TGG + chr1_1:29427491-29427510 Msa0017640:CDS 30.0%
ATAATTAACAAACCTGATGG+TGG + chr1_1:29427494-29427513 Msa0017640:CDS 30.0%
!! TAAGAGCTTTTTCTTATGAC+AGG + chr1_1:29427703-29427722 Msa0017640:intron 30.0%
!! AATTTCTATGCTGCTTTACT+TGG + chr1_1:29427755-29427774 Msa0017640:CDS 30.0%
TTTGTATACTACACTGATCA+TGG + chr1_1:29427842-29427861 Msa0017640:CDS 30.0%
TAACACTAACATATCGACAT+TGG - chr1_1:29428079-29428098 None:intergenic 30.0%
! ATTTCTTATTTGGTCTCTTC+AGG + chr1_1:29428361-29428380 Msa0017640:intron 30.0%
TTGAAGAAAAAACATGCTTC+TGG + chr1_1:29428430-29428449 Msa0017640:CDS 30.0%
ACTATTACTAGTGACTTACT+AGG - chr1_1:29428468-29428487 None:intergenic 30.0%
! AGCTTGCAAAATAAACCTTT+TGG + chr1_1:29428586-29428605 Msa0017640:intron 30.0%
!! TTAGTTTGTCTTCAACCAAA+AGG - chr1_1:29428604-29428623 None:intergenic 30.0%
TTATAACCATACAATCACCA+TGG + chr1_1:29428937-29428956 Msa0017640:intron 30.0%
TTTGCACCAGCAATATAAAT+TGG + chr1_1:29429121-29429140 Msa0017640:intron 30.0%
CAAGTGAGCAACAATTTATA+AGG - chr1_1:29429158-29429177 None:intergenic 30.0%
!! TGATGTCTTATTTGCTAATG+TGG + chr1_1:29429295-29429314 Msa0017640:CDS 30.0%
CAATCATCTCTTCCTATATT+TGG + chr1_1:29429394-29429413 Msa0017640:CDS 30.0%
AAACTAATATTGTCATTGGC+AGG - chr1_1:29429428-29429447 None:intergenic 30.0%
AAACATCCAAATGCAATTGA+CGG + chr1_1:29429610-29429629 Msa0017640:intron 30.0%
AATACTCAATATCTGGTTAC+TGG - chr1_1:29429653-29429672 None:intergenic 30.0%
CACCAAAAATACTCAATATC+TGG - chr1_1:29429660-29429679 None:intergenic 30.0%
!!! TGAGTATTTTTGGTGTTCAT+TGG + chr1_1:29429665-29429684 Msa0017640:intron 30.0%
! CTCTTATTTGGCATTGAAAA+GGG + chr1_1:29429802-29429821 Msa0017640:CDS 30.0%
AGTATGGTATGAAACATATG+AGG + chr1_1:29430128-29430147 Msa0017640:CDS 30.0%
AATACAATTGGAACACTACT+AGG + chr1_1:29430387-29430406 Msa0017640:three_prime_UTR 30.0%
! CTATGATTTTGGATGAACAA+AGG - chr1_1:29430454-29430473 None:intergenic 30.0%
! GAGCTCAATTACTATGATTT+TGG - chr1_1:29430465-29430484 None:intergenic 30.0%
ATGATCTCTACTTGATATTG+TGG + chr1_1:29430508-29430527 Msa0017640:three_prime_UTR 30.0%
TGATCTCTACTTGATATTGT+GGG + chr1_1:29430509-29430528 Msa0017640:three_prime_UTR 30.0%
ATTATGGCATTTATAACTGG+AGG + chr1_1:29430620-29430639 Msa0017640:three_prime_UTR 30.0%
TTATGGCATTTATAACTGGA+GGG + chr1_1:29430621-29430640 Msa0017640:three_prime_UTR 30.0%
TTGTGTGTAATAGTGTAAGT+AGG + chr1_1:29430709-29430728 Msa0017640:three_prime_UTR 30.0%
AAAAGTCCATGATTGAAGGA+AGG - chr1_1:29425906-29425925 None:intergenic 35.0%
TGAGAAAAGTCCATGATTGA+AGG - chr1_1:29425910-29425929 None:intergenic 35.0%
! TCAACGTTGTCATCATTTTC+AGG - chr1_1:29426060-29426079 None:intergenic 35.0%
GAAAATGATGACAACGTTGA+AGG + chr1_1:29426060-29426079 Msa0017640:CDS 35.0%
!! TTGCTGGTTCTAATGGTTAT+TGG + chr1_1:29426103-29426122 Msa0017640:CDS 35.0%
TGTCTCTCTATCAATTTCGA+TGG + chr1_1:29426780-29426799 Msa0017640:intron 35.0%
!! TTTTTGTTGCTTGCTTCATC+AGG + chr1_1:29427355-29427374 Msa0017640:intron 35.0%
GTCATGCGTATCAATTATTG+AGG + chr1_1:29427387-29427406 Msa0017640:CDS 35.0%
GCGTATCAATTATTGAGGAA+TGG + chr1_1:29427392-29427411 Msa0017640:CDS 35.0%
!! GGTTTGTTAATTATGACTCC+AGG - chr1_1:29427488-29427507 None:intergenic 35.0%
TGTTTATGAAGGAGTTCCAA+AGG + chr1_1:29427520-29427539 Msa0017640:CDS 35.0%
TTCTTATGACAGGATTACAC+TGG + chr1_1:29427713-29427732 Msa0017640:intron 35.0%
GGAAATAAATCAGCTCTTAC+AGG + chr1_1:29427776-29427795 Msa0017640:CDS 35.0%
AATAAATCAGCTCTTACAGG+TGG + chr1_1:29427779-29427798 Msa0017640:CDS 35.0%
ATAAATCAGCTCTTACAGGT+GGG + chr1_1:29427780-29427799 Msa0017640:CDS 35.0%
! ACGTCTTCAATTTGAAGTGA+CGG - chr1_1:29427972-29427991 None:intergenic 35.0%
CTTCAAATTGAAGACGTGTT+TGG + chr1_1:29427975-29427994 Msa0017640:intron 35.0%
!! TATTTTTGTTCGACACGTGT+GGG - chr1_1:29428004-29428023 None:intergenic 35.0%
!! AAAAGCTTAAGCCTTGTTTG+AGG + chr1_1:29428150-29428169 Msa0017640:intron 35.0%
AGATCAGATGCATACAAGTA+AGG - chr1_1:29428400-29428419 None:intergenic 35.0%
GAAGAACTACACAGAACAAA+CGG - chr1_1:29428520-29428539 None:intergenic 35.0%
AAAAAATTAGTGCGCGAGTT+TGG - chr1_1:29428633-29428652 None:intergenic 35.0%
GACTTATGTAATGGTGTAAC+AGG + chr1_1:29428655-29428674 Msa0017640:intron 35.0%
! GGTGTAACAGGTATTTTATC+TGG + chr1_1:29428667-29428686 Msa0017640:intron 35.0%
! GTAACAGGTATTTTATCTGG+AGG + chr1_1:29428670-29428689 Msa0017640:intron 35.0%
GCGTAGATATTGATATCTTC+TGG - chr1_1:29428731-29428750 None:intergenic 35.0%
TATCAATATCTACGCGACAA+CGG + chr1_1:29428736-29428755 Msa0017640:CDS 35.0%
AAATGCAGTAGAAAGCAGTT+GGG + chr1_1:29428763-29428782 Msa0017640:CDS 35.0%
AGACAGGTATGTAACTAAGA+AGG + chr1_1:29428871-29428890 Msa0017640:intron 35.0%
!!! CAAAGTTTTGAACTACTCCA+TGG - chr1_1:29428957-29428976 None:intergenic 35.0%
GTTAAGGATAGGACTATCAA+TGG + chr1_1:29429323-29429342 Msa0017640:CDS 35.0%
AGGACTATCAATGGTTACTA+TGG + chr1_1:29429332-29429351 Msa0017640:CDS 35.0%
TTACTATGGTTCTCATGTGA+TGG + chr1_1:29429346-29429365 Msa0017640:CDS 35.0%
CAGGATTTGTACCCAAATAT+AGG - chr1_1:29429409-29429428 None:intergenic 35.0%
TGAAGGTGATCTCAATTTCA+AGG - chr1_1:29429465-29429484 None:intergenic 35.0%
TTCAACAGCAGTTAACCAAA+GGG + chr1_1:29429481-29429500 Msa0017640:CDS 35.0%
ATGCTGATCTCATTCATTTC+TGG + chr1_1:29429504-29429523 Msa0017640:CDS 35.0%
TGCTGATCTCATTCATTTCT+GGG + chr1_1:29429505-29429524 Msa0017640:CDS 35.0%
!! TCTCATTCATTTCTGGGATA+AGG + chr1_1:29429511-29429530 Msa0017640:CDS 35.0%
!! TTTTGTGCTTCATTTTTCCG+CGG - chr1_1:29429718-29429737 None:intergenic 35.0%
! TGAAGCACAAAAGGAAGTTT+TGG + chr1_1:29429726-29429745 Msa0017640:CDS 35.0%
CTGATTGGAAAGCTCTTATT+TGG + chr1_1:29429790-29429809 Msa0017640:CDS 35.0%
! GCTCTTATTTGGCATTGAAA+AGG + chr1_1:29429801-29429820 Msa0017640:CDS 35.0%
AATCAAGAGAAGTAGTACCA+TGG - chr1_1:29429896-29429915 None:intergenic 35.0%
! TCAGCTTCATCTATCTTTTC+TGG + chr1_1:29429915-29429934 Msa0017640:intron 35.0%
AGTCATGCAAATTCATCACA+AGG - chr1_1:29430005-29430024 None:intergenic 35.0%
!!! AAGACTTTTGAGACACATTG+TGG + chr1_1:29430094-29430113 Msa0017640:CDS 35.0%
! CAAAGGCTTTAATATGTCAC+CGG - chr1_1:29430437-29430456 None:intergenic 35.0%
GATCTCTACTTGATATTGTG+GGG + chr1_1:29430510-29430529 Msa0017640:three_prime_UTR 35.0%
ACATACTTGTTTGTGACAAG+AGG - chr1_1:29430537-29430556 None:intergenic 35.0%
AATACAACCCTATCACTGAA+TGG - chr1_1:29430575-29430594 None:intergenic 35.0%
GGGATTATGGCATTTATAAC+TGG + chr1_1:29430617-29430636 Msa0017640:three_prime_UTR 35.0%
CATATTGGACATTCCACAAT+AGG - chr1_1:29430666-29430685 None:intergenic 35.0%
TGTGGAATGTCCAATATGAT+AGG + chr1_1:29430668-29430687 Msa0017640:three_prime_UTR 35.0%
GTGGAATGTCCAATATGATA+GGG + chr1_1:29430669-29430688 Msa0017640:three_prime_UTR 35.0%
! ATTCTGTTGCAAAGTGTCTA+GGG - chr1_1:29430755-29430774 None:intergenic 35.0%
! AATTCTGTTGCAAAGTGTCT+AGG - chr1_1:29430756-29430775 None:intergenic 35.0%
AGGAGAATGAATGAGTGAAG+AGG - chr1_1:29425886-29425905 None:intergenic 40.0%
CATTCTCCTTCCTTCAATCA+TGG + chr1_1:29425897-29425916 Msa0017640:exon 40.0%
AGCAAGGATGTTCAAGATGA+CGG - chr1_1:29425956-29425975 None:intergenic 40.0%
TGGCAATCGGATATAATCTC+CGG - chr1_1:29426004-29426023 None:intergenic 40.0%
CTTGAGATTGAGATGGCAAT+CGG - chr1_1:29426017-29426036 None:intergenic 40.0%
!! TGTCATCATTTTCAGGCTCA+TGG - chr1_1:29426053-29426072 None:intergenic 40.0%
AGTGTCATGAGATAAGAGTG+AGG - chr1_1:29426610-29426629 None:intergenic 40.0%
! TGCGGTGGTATTTAAAGCTT+TGG - chr1_1:29426811-29426830 None:intergenic 40.0%
CTCACTTCTATAGCTGACAT+CGG - chr1_1:29427144-29427163 None:intergenic 40.0%
CTTCCAATGTAGAGAATCCA+AGG + chr1_1:29427462-29427481 Msa0017640:CDS 40.0%
TTAATTATGACTCCAGGCCT+TGG - chr1_1:29427482-29427501 None:intergenic 40.0%
TCATAAACATCACCACCATC+AGG - chr1_1:29427509-29427528 None:intergenic 40.0%
! GATGGTGGTGATGTTTATGA+AGG + chr1_1:29427509-29427528 Msa0017640:CDS 40.0%
ACGTCTTTAGTGTGAAGTGT+CGG - chr1_1:29427577-29427596 None:intergenic 40.0%
! AGTGGGAAAGTTGTTGATAG+TGG + chr1_1:29427803-29427822 Msa0017640:CDS 40.0%
GTATACTACACTGATCATGG+AGG + chr1_1:29427845-29427864 Msa0017640:CDS 40.0%
!! GTATTTTTGTTCGACACGTG+TGG - chr1_1:29428005-29428024 None:intergenic 40.0%
CTGTGTAGTTCTTCCATGTT+TGG + chr1_1:29428526-29428545 Msa0017640:intron 40.0%
GAATCTGGCAGTATCTTTGA+AGG + chr1_1:29428698-29428717 Msa0017640:CDS 40.0%
CAAATGCAGTAGAAAGCAGT+TGG + chr1_1:29428762-29428781 Msa0017640:CDS 40.0%
AATGCAGTAGAAAGCAGTTG+GGG + chr1_1:29428764-29428783 Msa0017640:CDS 40.0%
ACTACTCCATGGTGATTGTA+TGG - chr1_1:29428946-29428965 None:intergenic 40.0%
! CTTATTTGCTAATGTGGTGC+AGG + chr1_1:29429301-29429320 Msa0017640:CDS 40.0%
! TGATGGAGTATGGTGATGTA+GGG + chr1_1:29429363-29429382 Msa0017640:CDS 40.0%
CTTTGGTTAACTGCTGTTGA+AGG - chr1_1:29429482-29429501 None:intergenic 40.0%
CTTCAACAGCAGTTAACCAA+AGG + chr1_1:29429480-29429499 Msa0017640:CDS 40.0%
TGGTTACTGGATCTTGTTCT+CGG - chr1_1:29429640-29429659 None:intergenic 40.0%
GCGGAAAAATGAAGCACAAA+AGG + chr1_1:29429717-29429736 Msa0017640:CDS 40.0%
!! TTTTGGAAGCAATGTCTCAC+AGG + chr1_1:29429743-29429762 Msa0017640:CDS 40.0%
GACAACAGTGTGAAACTGAT+TGG + chr1_1:29429775-29429794 Msa0017640:CDS 40.0%
! ATCACCACTTGTTGACAACT+GGG + chr1_1:29429858-29429877 Msa0017640:CDS 40.0%
!! GAAGTAGTACCATGGTTTTG+AGG - chr1_1:29429888-29429907 None:intergenic 40.0%
!! TTGCTTTTATGCCTAAGCCA+TGG + chr1_1:29429960-29429979 Msa0017640:intron 40.0%
! TGCTTTTATGCCTAAGCCAT+GGG + chr1_1:29429961-29429980 Msa0017640:intron 40.0%
!! CAGTTTTATCATTGCTCCCA+TGG - chr1_1:29429980-29429999 None:intergenic 40.0%
TGTGGATCTCTATCTCAGTA+TGG + chr1_1:29430112-29430131 Msa0017640:CDS 40.0%
AGGAATACAAACCGAGCAAA+TGG + chr1_1:29430174-29430193 Msa0017640:CDS 40.0%
TTGGAACACTACTAGGACAT+TGG + chr1_1:29430394-29430413 Msa0017640:three_prime_UTR 40.0%
TGGAACACTACTAGGACATT+GGG + chr1_1:29430395-29430414 Msa0017640:three_prime_UTR 40.0%
GTCCAATATGATAGGGAACA+AGG + chr1_1:29430676-29430695 Msa0017640:three_prime_UTR 40.0%
GACCTTGTTCCCTATCATAT+TGG - chr1_1:29430681-29430700 None:intergenic 40.0%
TAAGTAGGTAATTGGCAGAC+AGG + chr1_1:29430724-29430743 Msa0017640:three_prime_UTR 40.0%
! TCAAGATGACGGTGAGAAAG+AGG - chr1_1:29425945-29425964 None:intergenic 45.0%
GCAATCGGATATAATCTCCG+GGG - chr1_1:29426002-29426021 None:intergenic 45.0%
GGCAATCGGATATAATCTCC+GGG - chr1_1:29426003-29426022 None:intergenic 45.0%
ATGACAACGTTGAAGGGACT+AGG + chr1_1:29426067-29426086 Msa0017640:CDS 45.0%
!!! AGGTGGGCTATTTTACTTGC+TGG + chr1_1:29426087-29426106 Msa0017640:CDS 45.0%
! GCTTTAAATACCACCGCAAG+TGG + chr1_1:29426813-29426832 Msa0017640:intron 45.0%
GAGAATGGACCCTTCAGATT+AGG + chr1_1:29426841-29426860 Msa0017640:intron 45.0%
AGGCCTTGGATTCTCTACAT+TGG - chr1_1:29427468-29427487 None:intergenic 45.0%
AATGTAGAGAATCCAAGGCC+TGG + chr1_1:29427467-29427486 Msa0017640:CDS 45.0%
AATTACTCACCAAGAACCCC+TGG - chr1_1:29427872-29427891 None:intergenic 45.0%
GCATACAAGTAAGGACCAAC+TGG - chr1_1:29428391-29428410 None:intergenic 45.0%
! TATCTGGAGGCATGTGAATC+TGG + chr1_1:29428683-29428702 Msa0017640:CDS 45.0%
! AAGTTGAGTACTCTGGAGGA+GGG - chr1_1:29428817-29428836 None:intergenic 45.0%
! AAGCAAGTTGAGTACTCTGG+AGG - chr1_1:29428821-29428840 None:intergenic 45.0%
! CCTAAGCAAGTTGAGTACTC+TGG - chr1_1:29428824-29428843 None:intergenic 45.0%
! CCAGAGTACTCAACTTGCTT+AGG + chr1_1:29428821-29428840 Msa0017640:CDS 45.0%
GTGACCTATACAGCATTGCT+TGG + chr1_1:29428843-29428862 Msa0017640:CDS 45.0%
CCATCCAAGCAATGCTGTAT+AGG - chr1_1:29428850-29428869 None:intergenic 45.0%
CCTATACAGCATTGCTTGGA+TGG + chr1_1:29428847-29428866 Msa0017640:CDS 45.0%
TGCTAATGTGGTGCAGGTTA+AGG + chr1_1:29429307-29429326 Msa0017640:CDS 45.0%
ATGTGGTGCAGGTTAAGGAT+AGG + chr1_1:29429312-29429331 Msa0017640:CDS 45.0%
! GGTTCTCATGTGATGGAGTA+TGG + chr1_1:29429353-29429372 Msa0017640:CDS 45.0%
! GTGATGGAGTATGGTGATGT+AGG + chr1_1:29429362-29429381 Msa0017640:CDS 45.0%
GAATGAGATCAGCATCCCTT+TGG - chr1_1:29429499-29429518 None:intergenic 45.0%
GGTTACTGGATCTTGTTCTC+GGG - chr1_1:29429639-29429658 None:intergenic 45.0%
! GATCACCACTTGTTGACAAC+TGG + chr1_1:29429857-29429876 Msa0017640:CDS 45.0%
CAATCCCAGTTGTCAACAAG+TGG - chr1_1:29429865-29429884 None:intergenic 45.0%
TATCATTGCTCCCATGGCTT+AGG - chr1_1:29429974-29429993 None:intergenic 45.0%
TGCATTGCAGATGTTCGCAA+AGG - chr1_1:29430155-29430174 None:intergenic 45.0%
TTTGCGAACATCTGCAATGC+AGG + chr1_1:29430154-29430173 Msa0017640:CDS 45.0%
TGTAGAGAACTCCAAGGGTT+GGG - chr1_1:29430235-29430254 None:intergenic 45.0%
TTGTAGAGAACTCCAAGGGT+TGG - chr1_1:29430236-29430255 None:intergenic 45.0%
ACCCTTGGAGTTCTCTACAA+AGG + chr1_1:29430236-29430255 Msa0017640:CDS 45.0%
CCCTTTGTAGAGAACTCCAA+GGG - chr1_1:29430240-29430259 None:intergenic 45.0%
CCCTTGGAGTTCTCTACAAA+GGG + chr1_1:29430237-29430256 Msa0017640:CDS 45.0%
CCTTGGAGTTCTCTACAAAG+GGG + chr1_1:29430238-29430257 Msa0017640:CDS 45.0%
GGAACACTACTAGGACATTG+GGG + chr1_1:29430396-29430415 Msa0017640:three_prime_UTR 45.0%
TACTAGGACATTGGGGAGTA+GGG + chr1_1:29430403-29430422 Msa0017640:three_prime_UTR 45.0%
TTCCACAATAGGCAGAACTG+TGG - chr1_1:29430655-29430674 None:intergenic 45.0%
GTTGCAGTGGCGTATGAAGT+TGG - chr1_1:29425824-29425843 None:intergenic 50.0%
AAGGTGAGAGGTAGTTGCAG+TGG - chr1_1:29425837-29425856 None:intergenic 50.0%
GACGGTGAGAAAGAGGATAG+TGG - chr1_1:29425938-29425957 None:intergenic 50.0%
AACATCCTTGCTGCTGTCTC+CGG + chr1_1:29425964-29425983 Msa0017640:CDS 50.0%
TATAATCTCCGGGGAGGTCA+CGG - chr1_1:29425993-29426012 None:intergenic 50.0%
ATCGGATATAATCTCCGGGG+AGG - chr1_1:29425999-29426018 None:intergenic 50.0%
CTGGAGGCTTGAGATTGAGA+TGG - chr1_1:29426024-29426043 None:intergenic 50.0%
CATCTCAATCTCAAGCCTCC+AGG + chr1_1:29426022-29426041 Msa0017640:CDS 50.0%
TTCAGGCTCATGGAAGAACC+TGG - chr1_1:29426043-29426062 None:intergenic 50.0%
ACAACGTTGAAGGGACTAGG+TGG + chr1_1:29426070-29426089 Msa0017640:CDS 50.0%
CAACGTTGAAGGGACTAGGT+GGG + chr1_1:29426071-29426090 Msa0017640:CDS 50.0%
CCATTCTCATCGTCCACTTG+CGG - chr1_1:29426829-29426848 None:intergenic 50.0%
ACAGGATTACACTGGTGCAG+AGG + chr1_1:29427721-29427740 Msa0017640:intron 50.0%
TACACTGATCATGGAGGTCC+AGG + chr1_1:29427851-29427870 Msa0017640:CDS 50.0%
ACACTGATCATGGAGGTCCA+GGG + chr1_1:29427852-29427871 Msa0017640:CDS 50.0%
GTCGGCAATAGCCTCAAACA+AGG - chr1_1:29428164-29428183 None:intergenic 50.0%
GTCTCTTCAGGTATGCCAGT+TGG + chr1_1:29428373-29428392 Msa0017640:intron 50.0%
AGTTGGGGAACATATTGCCC+TGG + chr1_1:29428779-29428798 Msa0017640:CDS 50.0%
GTTGGGGAACATATTGCCCT+GGG + chr1_1:29428780-29428799 Msa0017640:CDS 50.0%
TTGGGGAACATATTGCCCTG+GGG + chr1_1:29428781-29428800 Msa0017640:CDS 50.0%
! AGTTGAGTACTCTGGAGGAG+GGG - chr1_1:29428816-29428835 None:intergenic 50.0%
! CAAGTTGAGTACTCTGGAGG+AGG - chr1_1:29428818-29428837 None:intergenic 50.0%
GCATTGCTTGGATGGAAGAC+AGG + chr1_1:29428855-29428874 Msa0017640:CDS 50.0%
GGGCATCCGTCAATTGCATT+TGG - chr1_1:29429619-29429638 None:intergenic 50.0%
CTCGACAATGTTAGACCTGC+TGG + chr1_1:29429835-29429854 Msa0017640:CDS 50.0%
TCAACAAGTGGTGATCCAGC+AGG - chr1_1:29429853-29429872 None:intergenic 50.0%
CTGGGATTGCCTCAAAACCA+TGG + chr1_1:29429876-29429895 Msa0017640:CDS 50.0%
ACTGGTACAAGCTTGTGCTG+AGG - chr1_1:29430206-29430225 None:intergenic 50.0%
CCCCTTTGTAGAGAACTCCA+AGG - chr1_1:29430241-29430260 None:intergenic 50.0%
CTACTAGGACATTGGGGAGT+AGG + chr1_1:29430402-29430421 Msa0017640:three_prime_UTR 50.0%
!! GGGGAGTAGGGTTTTAGTAC+CGG + chr1_1:29430415-29430434 Msa0017640:three_prime_UTR 50.0%
GACCACAGTTCTGCCTATTG+TGG + chr1_1:29430650-29430669 Msa0017640:three_prime_UTR 50.0%
AGGCTCATGGAAGAACCTGG+AGG - chr1_1:29426040-29426059 None:intergenic 55.0%
TTCTCATCGTCCACTTGCGG+TGG - chr1_1:29426826-29426845 None:intergenic 55.0%
CCGCAAGTGGACGATGAGAA+TGG + chr1_1:29426826-29426845 Msa0017640:intron 55.0%
TCAGCTCTTACAGGTGGGAG+TGG + chr1_1:29427785-29427804 Msa0017640:CDS 55.0%
CAGCTCTTACAGGTGGGAGT+GGG + chr1_1:29427786-29427805 Msa0017640:CDS 55.0%
CACTGATCATGGAGGTCCAG+GGG + chr1_1:29427853-29427872 Msa0017640:CDS 55.0%
! GTTGAGTACTCTGGAGGAGG+GGG - chr1_1:29428815-29428834 None:intergenic 55.0%
! CAGTTCCGCAAAGCACCTGA+GGG + chr1_1:29429688-29429707 Msa0017640:intron 55.0%
GAGAACCCTCAGGTGCTTTG+CGG - chr1_1:29429696-29429715 None:intergenic 55.0%
! TTTTTCCGCGGAGAACCCTC+AGG - chr1_1:29429706-29429725 None:intergenic 55.0%
ACAAACCGAGCAAATGGCCG+AGG + chr1_1:29430180-29430199 Msa0017640:CDS 55.0%
ACAAGCTTGTGCTGAGGCCT+CGG - chr1_1:29430200-29430219 None:intergenic 55.0%
CCAAGGGTTGGGAGGAATAC+TGG - chr1_1:29430224-29430243 None:intergenic 55.0%
CCAGTATTCCTCCCAACCCT+TGG + chr1_1:29430221-29430240 Msa0017640:CDS 55.0%
AGAGAACTCCAAGGGTTGGG+AGG - chr1_1:29430232-29430251 None:intergenic 55.0%
CATGGAGGTCCAGGGGTTCT+TGG + chr1_1:29427860-29427879 Msa0017640:CDS 60.0%
! AGTACTCTGGAGGAGGGGGA+GGG - chr1_1:29428811-29428830 None:intergenic 60.0%
! GCAGTTCCGCAAAGCACCTG+AGG + chr1_1:29429687-29429706 Msa0017640:intron 60.0%
AAGCACCTGAGGGTTCTCCG+CGG + chr1_1:29429698-29429717 Msa0017640:CDS 60.0%
TGAGGCCTCGGCCATTTGCT+CGG - chr1_1:29430188-29430207 None:intergenic 60.0%
GGCTACCGGAGACAGCAGCA+AGG - chr1_1:29425972-29425991 None:intergenic 65.0%
! GAGTACTCTGGAGGAGGGGG+AGG - chr1_1:29428812-29428831 None:intergenic 65.0%
TCCGGTAGCCGTGACCTCCC+CGG + chr1_1:29425982-29426001 Msa0017640:CDS 70.0%
TCCGGGGAGGTCACGGCTAC+CGG - chr1_1:29425986-29426005 None:intergenic 70.0%
!! GAGGGGGAGGGTACTCCCCA+GGG - chr1_1:29428799-29428818 None:intergenic 70.0%
!! GGAGGGGGAGGGTACTCCCC+AGG - chr1_1:29428800-29428819 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29425787 29431069 29425787 ID=Msa0017640;Name=Msa0017640
chr1_1 mRNA 29425787 29431069 29425787 ID=Msa0017640-mRNA-1;Parent=Msa0017640;Name=Msa0017640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=129|0.85|0.87|1|1|1|8|796|490
chr1_1 exon 29425787 29426140 29425787 ID=Msa0017640-mRNA-1:exon:9823;Parent=Msa0017640-mRNA-1
chr1_1 exon 29427377 29427541 29427377 ID=Msa0017640-mRNA-1:exon:9824;Parent=Msa0017640-mRNA-1
chr1_1 exon 29427725 29427881 29427725 ID=Msa0017640-mRNA-1:exon:9825;Parent=Msa0017640-mRNA-1
chr1_1 exon 29428383 29428468 29428383 ID=Msa0017640-mRNA-1:exon:9826;Parent=Msa0017640-mRNA-1
chr1_1 exon 29428677 29428876 29428677 ID=Msa0017640-mRNA-1:exon:9827;Parent=Msa0017640-mRNA-1
chr1_1 exon 29429283 29429532 29429283 ID=Msa0017640-mRNA-1:exon:9828;Parent=Msa0017640-mRNA-1
chr1_1 exon 29429691 29429897 29429691 ID=Msa0017640-mRNA-1:exon:9829;Parent=Msa0017640-mRNA-1
chr1_1 exon 29430091 29431069 29430091 ID=Msa0017640-mRNA-1:exon:9830;Parent=Msa0017640-mRNA-1
chr1_1 five_prime_UTR 29425787 29425915 29425787 ID=Msa0017640-mRNA-1:five_prime_utr;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29425916 29426140 29425916 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29427377 29427541 29427377 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29427725 29427881 29427725 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29428383 29428468 29428383 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29428677 29428876 29428677 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29429283 29429532 29429283 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29429691 29429897 29429691 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 CDS 29430091 29430273 29430091 ID=Msa0017640-mRNA-1:cds;Parent=Msa0017640-mRNA-1
chr1_1 three_prime_UTR 29430274 29431069 29430274 ID=Msa0017640-mRNA-1:three_prime_utr;Parent=Msa0017640-mRNA-1
Gene Sequence

>Msa0017640

ATGGACTTTTCTCAATTTTCCACTATCCTCTTTCTCACCGTCATCTTGAACATCCTTGCTGCTGTCTCCGGTAGCCGTGACCTCCCCGGAGATTATATCCGATTGCCATCTCAATCTCAAGCCTCCAGGTTCTTCCATGAGCCTGAAAATGATGACAACGTTGAAGGGACTAGGTGGGCTATTTTACTTGCTGGTTCTAATGGTTATTGGAATTATAGGCATCAGGCTGATGTTTGTCATGCGTATCAATTATTGAGGAATGGTGGCTTGAAAGAAGAAAACATTATTGTTTTCATGTATGATGATATTGCTTCCAATGTAGAGAATCCAAGGCCTGGAGTCATAATTAACAAACCTGATGGTGGTGATGTTTATGAAGGAGTTCCAAAGGATTACACTGGTGCAGAGGTACATGCTGACAATTTCTATGCTGCTTTACTTGGAAATAAATCAGCTCTTACAGGTGGGAGTGGGAAAGTTGTTGATAGTGGCCCAAATGATCATATTTTTGTATACTACACTGATCATGGAGGTCCAGGGGTTCTTGGTATGCCAGTTGGTCCTTACTTGTATGCATCTGATCTGAATGAAGTCTTGAAGAAAAAACATGCTTCTGGATCATATAAGAGCCTAGTATTTTATCTGGAGGCATGTGAATCTGGCAGTATCTTTGAAGGTCTTCTTCCAGAAGATATCAATATCTACGCGACAACGGCTTCAAATGCAGTAGAAAGCAGTTGGGGAACATATTGCCCTGGGGAGTACCCTCCCCCTCCTCCAGAGTACTCAACTTGCTTAGGTGACCTATACAGCATTGCTTGGATGGAAGACAGGAGTTTGGTAATTGATGTCTTATTTGCTAATGTGGTGCAGGTTAAGGATAGGACTATCAATGGTTACTATGGTTCTCATGTGATGGAGTATGGTGATGTAGGGCTTAGCAACAATCATCTCTTCCTATATTTGGGTACAAATCCTGCCAATGACAATATTAGTTTTGTGGATGAAAGCTCCTTGAAATTGAGATCACCTTCAACAGCAGTTAACCAAAGGGATGCTGATCTCATTCATTTCTGGGATAAGTTCCGCAAAGCACCTGAGGGTTCTCCGCGGAAAAATGAAGCACAAAAGGAAGTTTTGGAAGCAATGTCTCACAGGATGCATGTAGACAACAGTGTGAAACTGATTGGAAAGCTCTTATTTGGCATTGAAAAGGGTACTGAAATGCTCGACAATGTTAGACCTGCTGGATCACCACTTGTTGACAACTGGGATTGCCTCAAAACCATGGTGAAGACTTTTGAGACACATTGTGGATCTCTATCTCAGTATGGTATGAAACATATGAGGTCCTTTGCGAACATCTGCAATGCAGGAATACAAACCGAGCAAATGGCCGAGGCCTCAGCACAAGCTTGTACCAGTATTCCTCCCAACCCTTGGAGTTCTCTACAAAGGGGTTTCAGTGCATAG
Protein sequence

>Msa0017640

MDFSQFSTILFLTVILNILAAVSGSRDLPGDYIRLPSQSQASRFFHEPENDDNVEGTRWAILLAGSNGYWNYRHQADVCHAYQLLRNGGLKEENIIVFMYDDIASNVENPRPGVIINKPDGGDVYEGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGSYKSLVFYLEACESGSIFEGLLPEDINIYATTASNAVESSWGTYCPGEYPPPPPEYSTCLGDLYSIAWMEDRSLVIDVLFANVVQVKDRTINGYYGSHVMEYGDVGLSNNHLFLYLGTNPANDNISFVDESSLKLRSPSTAVNQRDADLIHFWDKFRKAPEGSPRKNEAQKEVLEAMSHRMHVDNSVKLIGKLLFGIEKGTEMLDNVRPAGSPLVDNWDCLKTMVKTFETHCGSLSQYGMKHMRSFANICNAGIQTEQMAEASAQACTSIPPNPWSSLQRGFSA*