Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0005610 | sp|Q3S4A7|AHK5_ARATH | 61.111 | 396 | 130 | 5 | 2 | 379 | 42 | 431 | 3.65e-150 | 450 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005610 | Msa0096590 | 0.861747 | 8.257150e-64 | -8.615850e-47 |
Msa0005610 | Msa0148700 | 0.802829 | 4.659956e-49 | -8.615850e-47 |
Msa0005610 | Msa0591490 | 0.806815 | 6.848136e-50 | -8.615850e-47 |
Msa0005610 | Msa0951150 | 0.800011 | 1.760608e-48 | -8.615850e-47 |
Msa0005610 | Msa1431160 | 0.877357 | 6.708115e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0005610 | MtrunA17_Chr1g0150531 | 88.462 | 390 | 33 | 2 | 1 | 379 | 1 | 389 | 0.0 | 690 |
Msa0005610 | MtrunA17_Chr1g0150511 | 80.952 | 399 | 55 | 3 | 2 | 379 | 43 | 441 | 0.0 | 632 |
Msa0005610 | MtrunA17_Chr3g0136601 | 74.623 | 398 | 80 | 4 | 2 | 379 | 39 | 435 | 0.0 | 583 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0005610 | AT5G10720.1 | 61.111 | 396 | 130 | 5 | 2 | 379 | 42 | 431 | 3.71e-151 | 450 |
Msa0005610 | AT5G10680.2 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.20e-23 | 98.6 |
Msa0005610 | AT5G10680.1 | 46.212 | 132 | 53 | 4 | 1 | 122 | 37 | 160 | 1.20e-23 | 98.6 |
Find 57 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATGCACCTGTTGTTAT+AGG | 0.182020 | 1_1:-8280136 | Msa0005610:CDS |
CTTTGAAAATCAGCTATAAT+TGG | 0.203037 | 1_1:+8280646 | None:intergenic |
AATAAAACTATTTACATTAC+AGG | 0.248651 | 1_1:-8279050 | Msa0005610:intron |
CATGATATCTTCAGGAGATT+TGG | 0.274046 | 1_1:-8278803 | Msa0005610:CDS |
AGAAAGGAATACCTGCAAAA+AGG | 0.324513 | 1_1:-8279613 | Msa0005610:CDS |
AAAACATCCGGATTCAATAT+TGG | 0.341750 | 1_1:-8280416 | Msa0005610:CDS |
AGAAGAAGTAACAATCTTAG+AGG | 0.346203 | 1_1:-8280671 | Msa0005610:CDS |
GAAACATCGGTCACGAGATA+TGG | 0.358103 | 1_1:-8280308 | Msa0005610:CDS |
AGTATGATGATGTTGTTTAC+TGG | 0.359184 | 1_1:-8280330 | Msa0005610:CDS |
TTTATTAAGTTCTGTTTCCT+TGG | 0.367714 | 1_1:+8279067 | None:intergenic |
AAGAGAGAAGTAATGGAGAA+AGG | 0.411442 | 1_1:-8279629 | Msa0005610:CDS |
CTTCCTCCCTTTGTTTGCTA+AGG | 0.415873 | 1_1:+8280506 | None:intergenic |
GTTGAAATTTCCACGGGATC+AGG | 0.422798 | 1_1:-8279674 | Msa0005610:CDS |
TATTGGATGGTGTTGCAATC+AGG | 0.426610 | 1_1:-8280399 | Msa0005610:CDS |
AACGATTGGAGGGAAGTATT+CGG | 0.430328 | 1_1:-8280282 | Msa0005610:CDS |
ATAAATTTCCAGGACCTCAT+AGG | 0.439968 | 1_1:-8279707 | Msa0005610:intron |
GAGATACTTAAAGACAATAA+TGG | 0.444436 | 1_1:-8280466 | Msa0005610:CDS |
TTGGATGCCATGATATCTTC+AGG | 0.452888 | 1_1:-8278811 | Msa0005610:CDS |
TAAAGACAATAATGGATTTG+AGG | 0.457522 | 1_1:-8280458 | Msa0005610:CDS |
TAGAGAACAAAGGCAGCTCT+TGG | 0.468770 | 1_1:-8278830 | Msa0005610:CDS |
GATCCTTCCAAGGCTGAGTC+GGG | 0.469731 | 1_1:-8278754 | Msa0005610:CDS |
CAAATCTCCTGAAGATATCA+TGG | 0.470277 | 1_1:+8278804 | None:intergenic |
AGCAAGGCAGGAGAAACAAT+TGG | 0.472538 | 1_1:-8279524 | Msa0005610:CDS |
ACCTGTTGTTATAGGCCATC+AGG | 0.477859 | 1_1:-8280128 | Msa0005610:intron |
TTTCTAACCCGACTCAGCCT+TGG | 0.478360 | 1_1:+8278747 | None:intergenic |
AGCTAATCTCACGAAACATT+GGG | 0.482663 | 1_1:-8280578 | Msa0005610:CDS |
ACCTGATGGCCTATAACAAC+AGG | 0.486112 | 1_1:+8280127 | None:intergenic |
GAACCTGTGTTTAGCAAGGC+AGG | 0.487467 | 1_1:-8279536 | Msa0005610:CDS |
TGATCCTTCCAAGGCTGAGT+CGG | 0.495766 | 1_1:-8278755 | Msa0005610:CDS |
ACACCATCCAATATTGAATC+CGG | 0.501464 | 1_1:+8280409 | None:intergenic |
AAACAAAAGAATTGAAATTG+AGG | 0.507015 | 1_1:-8280356 | Msa0005610:CDS |
TGTCGAGCTCTTCTCGAAGA+AGG | 0.522863 | 1_1:+8280530 | None:intergenic |
TAGCTAATCTCACGAAACAT+TGG | 0.523948 | 1_1:-8280579 | Msa0005610:CDS |
AATGAGAGCAAAACAAGTGC+TGG | 0.527084 | 1_1:-8278932 | Msa0005610:CDS |
ACTTTCTGATGTTGTTAGCA+TGG | 0.533367 | 1_1:-8278881 | Msa0005610:CDS |
CGACAACCTTAGCAAACAAA+GGG | 0.535427 | 1_1:-8280512 | Msa0005610:CDS |
TCTCCTGCCTTGCTAAACAC+AGG | 0.549002 | 1_1:+8279533 | None:intergenic |
AACGGATGTTGAAATTTCCA+CGG | 0.549138 | 1_1:-8279681 | Msa0005610:CDS |
CATCCGGATTCAATATTGGA+TGG | 0.554723 | 1_1:-8280412 | Msa0005610:CDS |
GAAACATTGGGAGTATAAGC+AGG | 0.554790 | 1_1:-8280566 | Msa0005610:CDS |
TGATATACTTGATCCTTCCA+AGG | 0.562404 | 1_1:-8278764 | Msa0005610:CDS |
ATCTGTGACAGTTCTTCCAC+AGG | 0.563140 | 1_1:+8280196 | None:intergenic |
ACGGATGTTGAAATTTCCAC+GGG | 0.578700 | 1_1:-8279680 | Msa0005610:CDS |
TTCCTTCGCACCTGATCCCG+TGG | 0.579266 | 1_1:+8279664 | None:intergenic |
ATGCTAACAACATCAGAAAG+TGG | 0.579722 | 1_1:+8278883 | None:intergenic |
TAACCCGACTCAGCCTTGGA+AGG | 0.583784 | 1_1:+8278751 | None:intergenic |
TCGACAACCTTAGCAAACAA+AGG | 0.586507 | 1_1:-8280513 | Msa0005610:CDS |
TTCCACGGGATCAGGTGCGA+AGG | 0.600321 | 1_1:-8279666 | Msa0005610:CDS |
TGCAGAACCTGTGTTTAGCA+AGG | 0.605158 | 1_1:-8279540 | Msa0005610:CDS |
ATGTTGTTTACTGGAAACAT+CGG | 0.642416 | 1_1:-8280321 | Msa0005610:CDS |
CAACCTTAGCAAACAAAGGG+AGG | 0.643459 | 1_1:-8280509 | Msa0005610:CDS |
GGATTTGAGGAAGAAAGCTA+CGG | 0.643602 | 1_1:-8280445 | Msa0005610:CDS |
TGAAAGACAATCATCACCTG+TGG | 0.646063 | 1_1:-8280212 | Msa0005610:CDS |
AATTGCAGTTCAGAAAGCCA+AGG | 0.648370 | 1_1:-8279084 | Msa0005610:CDS |
GTAAACAACATCATCATACT+CGG | 0.655371 | 1_1:+8280333 | None:intergenic |
TTTGAGGAAGAAAGCTACGG+TGG | 0.675740 | 1_1:-8280442 | Msa0005610:CDS |
CAAAACTTGATAGAGAACAA+AGG | 0.676780 | 1_1:-8278840 | Msa0005610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTAAATTTGTTTATAAGT+GGG | + | chr1_1:8280077-8280096 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | - | chr1_1:8280388-8280407 | Msa0005610:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | + | chr1_1:8280428-8280447 | None:intergenic | 15.0% |
!!! | TTGTAAATTTGTTTATAAGT+GGG | + | chr1_1:8280077-8280096 | None:intergenic | 15.0% |
!! | AATAAAACTATTTACATTAC+AGG | - | chr1_1:8280388-8280407 | Msa0005610:CDS | 15.0% |
!! | GAAATTCATAAATCAAAATT+TGG | + | chr1_1:8280428-8280447 | None:intergenic | 15.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | - | chr1_1:8279082-8279101 | Msa0005610:CDS | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | + | chr1_1:8280076-8280095 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | + | chr1_1:8280078-8280097 | None:intergenic | 20.0% |
!! | AAACAAAAGAATTGAAATTG+AGG | - | chr1_1:8279082-8279101 | Msa0005610:CDS | 20.0% |
!!! | TGTAAATTTGTTTATAAGTG+GGG | + | chr1_1:8280076-8280095 | None:intergenic | 20.0% |
!!! | CTTGTAAATTTGTTTATAAG+TGG | + | chr1_1:8280078-8280097 | None:intergenic | 20.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | + | chr1_1:8278795-8278814 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | - | chr1_1:8278972-8278991 | Msa0005610:intron | 25.0% |
!!! | TAAAGACAATAATGGATTTG+AGG | - | chr1_1:8278980-8278999 | Msa0005610:intron | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | - | chr1_1:8279802-8279821 | Msa0005610:intron | 25.0% |
!! | ATTGTCTTAAAATTTGGGTT+AGG | - | chr1_1:8280007-8280026 | Msa0005610:intron | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | + | chr1_1:8280075-8280094 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | - | chr1_1:8280212-8280231 | Msa0005610:CDS | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | - | chr1_1:8280213-8280232 | Msa0005610:CDS | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | + | chr1_1:8280250-8280269 | None:intergenic | 25.0% |
!!! | TAATTTTGACAAACAATTGC+AGG | - | chr1_1:8280294-8280313 | Msa0005610:CDS | 25.0% |
! | TTTATTAAGTTCTGTTTCCT+TGG | + | chr1_1:8280374-8280393 | None:intergenic | 25.0% |
!! | CTTTGAAAATCAGCTATAAT+TGG | + | chr1_1:8278795-8278814 | None:intergenic | 25.0% |
! | GAGATACTTAAAGACAATAA+TGG | - | chr1_1:8278972-8278991 | Msa0005610:intron | 25.0% |
!!! | TAAAGACAATAATGGATTTG+AGG | - | chr1_1:8278980-8278999 | Msa0005610:intron | 25.0% |
!!! | AGATTTTAAGAGAGAAGTAA+TGG | - | chr1_1:8279802-8279821 | Msa0005610:intron | 25.0% |
!! | ATTGTCTTAAAATTTGGGTT+AGG | - | chr1_1:8280007-8280026 | Msa0005610:intron | 25.0% |
!! | GTAAATTTGTTTATAAGTGG+GGG | + | chr1_1:8280075-8280094 | None:intergenic | 25.0% |
! | ATAGGATATGTGTTTATAAG+TGG | - | chr1_1:8280212-8280231 | Msa0005610:CDS | 25.0% |
! | TAGGATATGTGTTTATAAGT+GGG | - | chr1_1:8280213-8280232 | Msa0005610:CDS | 25.0% |
!!! | GATTGAAAGGTATTAGAATT+TGG | + | chr1_1:8280250-8280269 | None:intergenic | 25.0% |
!!! | TAATTTTGACAAACAATTGC+AGG | - | chr1_1:8280294-8280313 | Msa0005610:CDS | 25.0% |
! | TTTATTAAGTTCTGTTTCCT+TGG | + | chr1_1:8280374-8280393 | None:intergenic | 25.0% |
AGAAGAAGTAACAATCTTAG+AGG | - | chr1_1:8278767-8278786 | Msa0005610:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | - | chr1_1:8278800-8278819 | Msa0005610:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | - | chr1_1:8279022-8279041 | Msa0005610:intron | 30.0% | |
GTAAACAACATCATCATACT+CGG | + | chr1_1:8279108-8279127 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | - | chr1_1:8279108-8279127 | Msa0005610:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | - | chr1_1:8279117-8279136 | Msa0005610:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | + | chr1_1:8279558-8279577 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | - | chr1_1:8279555-8279574 | Msa0005610:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | - | chr1_1:8279558-8279577 | Msa0005610:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | + | chr1_1:8279565-8279584 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | - | chr1_1:8279721-8279740 | Msa0005610:intron | 30.0% | |
!! | AAAGTTATTTCCCTTTTTGC+AGG | + | chr1_1:8279839-8279858 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | - | chr1_1:8279928-8279947 | Msa0005610:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | - | chr1_1:8279929-8279948 | Msa0005610:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | + | chr1_1:8279966-8279985 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | - | chr1_1:8279967-8279986 | Msa0005610:intron | 30.0% |
ACCTGCATTGTCTTAAAATT+TGG | - | chr1_1:8280001-8280020 | Msa0005610:intron | 30.0% | |
CCTGCATTGTCTTAAAATTT+GGG | - | chr1_1:8280002-8280021 | Msa0005610:intron | 30.0% | |
! | ATTTGTTAGTAGTCTCACAT+TGG | - | chr1_1:8280189-8280208 | Msa0005610:CDS | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | - | chr1_1:8280214-8280233 | Msa0005610:CDS | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | + | chr1_1:8280263-8280282 | None:intergenic | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | - | chr1_1:8280315-8280334 | Msa0005610:CDS | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | - | chr1_1:8280327-8280346 | Msa0005610:CDS | 30.0% | |
CAAAACTTGATAGAGAACAA+AGG | - | chr1_1:8280598-8280617 | Msa0005610:CDS | 30.0% | |
AGAAGAAGTAACAATCTTAG+AGG | - | chr1_1:8278767-8278786 | Msa0005610:CDS | 30.0% | |
!! | AGCTGATTTTCAAAGAATTG+TGG | - | chr1_1:8278800-8278819 | Msa0005610:CDS | 30.0% |
AAAACATCCGGATTCAATAT+TGG | - | chr1_1:8279022-8279041 | Msa0005610:intron | 30.0% | |
GTAAACAACATCATCATACT+CGG | + | chr1_1:8279108-8279127 | None:intergenic | 30.0% | |
! | AGTATGATGATGTTGTTTAC+TGG | - | chr1_1:8279108-8279127 | Msa0005610:CDS | 30.0% |
! | ATGTTGTTTACTGGAAACAT+CGG | - | chr1_1:8279117-8279136 | Msa0005610:CDS | 30.0% |
! | CCTCTTTTAAACTTGGAAAA+TGG | + | chr1_1:8279558-8279577 | None:intergenic | 30.0% |
! | CCATTTTCCAAGTTTAAAAG+AGG | - | chr1_1:8279555-8279574 | Msa0005610:CDS | 30.0% |
! | TTTTCCAAGTTTAAAAGAGG+AGG | - | chr1_1:8279558-8279577 | Msa0005610:CDS | 30.0% |
! | ATTACCTCCTCTTTTAAACT+TGG | + | chr1_1:8279565-8279584 | None:intergenic | 30.0% |
TTACTTGCACATAAATTTCC+AGG | - | chr1_1:8279721-8279740 | Msa0005610:intron | 30.0% | |
!! | AAAGTTATTTCCCTTTTTGC+AGG | + | chr1_1:8279839-8279858 | None:intergenic | 30.0% |
AACAATTGGAGTAAACCATA+TGG | - | chr1_1:8279928-8279947 | Msa0005610:intron | 30.0% | |
ACAATTGGAGTAAACCATAT+GGG | - | chr1_1:8279929-8279948 | Msa0005610:intron | 30.0% | |
! | AGTAACAGTTTTTACCTGAT+CGG | + | chr1_1:8279966-8279985 | None:intergenic | 30.0% |
! | TCAGGTAAAAACTGTTACTT+TGG | - | chr1_1:8279967-8279986 | Msa0005610:intron | 30.0% |
ACCTGCATTGTCTTAAAATT+TGG | - | chr1_1:8280001-8280020 | Msa0005610:intron | 30.0% | |
CCTGCATTGTCTTAAAATTT+GGG | - | chr1_1:8280002-8280021 | Msa0005610:intron | 30.0% | |
! | ATTTGTTAGTAGTCTCACAT+TGG | - | chr1_1:8280189-8280208 | Msa0005610:CDS | 30.0% |
AGGATATGTGTTTATAAGTG+GGG | - | chr1_1:8280214-8280233 | Msa0005610:CDS | 30.0% | |
TGCACAAAAACAAGATTGAA+AGG | + | chr1_1:8280263-8280282 | None:intergenic | 30.0% | |
GGTGAGAAAAAGAGAAAAAA+TGG | - | chr1_1:8280315-8280334 | Msa0005610:CDS | 30.0% | |
AGAAAAAATGGCAAAGCTAA+GGG | - | chr1_1:8280327-8280346 | Msa0005610:CDS | 30.0% | |
CAAAACTTGATAGAGAACAA+AGG | - | chr1_1:8280598-8280617 | Msa0005610:CDS | 30.0% | |
TAGCTAATCTCACGAAACAT+TGG | - | chr1_1:8278859-8278878 | Msa0005610:CDS | 35.0% | |
AGCTAATCTCACGAAACATT+GGG | - | chr1_1:8278860-8278879 | Msa0005610:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | + | chr1_1:8279032-8279051 | None:intergenic | 35.0% | |
ACGAGATATGGAAAAACGAT+TGG | - | chr1_1:8279142-8279161 | Msa0005610:intron | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | - | chr1_1:8279145-8279164 | Msa0005610:intron | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | - | chr1_1:8279146-8279165 | Msa0005610:intron | 35.0% | |
CAAAATGCACCTGTTGTTAT+AGG | - | chr1_1:8279302-8279321 | Msa0005610:intron | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | - | chr1_1:8279731-8279750 | Msa0005610:intron | 35.0% | |
AACGGATGTTGAAATTTCCA+CGG | - | chr1_1:8279757-8279776 | Msa0005610:intron | 35.0% | |
! | AAGAGAGAAGTAATGGAGAA+AGG | - | chr1_1:8279809-8279828 | Msa0005610:intron | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | - | chr1_1:8279825-8279844 | Msa0005610:intron | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | - | chr1_1:8279826-8279845 | Msa0005610:intron | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | - | chr1_1:8279854-8279873 | Msa0005610:intron | 35.0% |
!!! | CCCAAATTTTAAGACAATGC+AGG | + | chr1_1:8280005-8280024 | None:intergenic | 35.0% |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | + | chr1_1:8280043-8280062 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | - | chr1_1:8280040-8280059 | Msa0005610:intron | 35.0% | |
AAAACCAACTTGTAAGGTCT+GGG | - | chr1_1:8280046-8280065 | Msa0005610:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | - | chr1_1:8280194-8280213 | Msa0005610:CDS | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | - | chr1_1:8280215-8280234 | Msa0005610:CDS | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | - | chr1_1:8280326-8280345 | Msa0005610:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | + | chr1_1:8280489-8280508 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | + | chr1_1:8280490-8280509 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | + | chr1_1:8280491-8280510 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | + | chr1_1:8280558-8280577 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | - | chr1_1:8280557-8280576 | Msa0005610:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | + | chr1_1:8280637-8280656 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | - | chr1_1:8280635-8280654 | Msa0005610:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | - | chr1_1:8280674-8280693 | Msa0005610:CDS | 35.0% | |
TAGCTAATCTCACGAAACAT+TGG | - | chr1_1:8278859-8278878 | Msa0005610:CDS | 35.0% | |
AGCTAATCTCACGAAACATT+GGG | - | chr1_1:8278860-8278879 | Msa0005610:CDS | 35.0% | |
ACACCATCCAATATTGAATC+CGG | + | chr1_1:8279032-8279051 | None:intergenic | 35.0% | |
ACGAGATATGGAAAAACGAT+TGG | - | chr1_1:8279142-8279161 | Msa0005610:intron | 35.0% | |
AGATATGGAAAAACGATTGG+AGG | - | chr1_1:8279145-8279164 | Msa0005610:intron | 35.0% | |
GATATGGAAAAACGATTGGA+GGG | - | chr1_1:8279146-8279165 | Msa0005610:intron | 35.0% | |
CAAAATGCACCTGTTGTTAT+AGG | - | chr1_1:8279302-8279321 | Msa0005610:intron | 35.0% | |
ATAAATTTCCAGGACCTCAT+AGG | - | chr1_1:8279731-8279750 | Msa0005610:intron | 35.0% | |
AACGGATGTTGAAATTTCCA+CGG | - | chr1_1:8279757-8279776 | Msa0005610:intron | 35.0% | |
! | AAGAGAGAAGTAATGGAGAA+AGG | - | chr1_1:8279809-8279828 | Msa0005610:intron | 35.0% |
AGAAAGGAATACCTGCAAAA+AGG | - | chr1_1:8279825-8279844 | Msa0005610:intron | 35.0% | |
GAAAGGAATACCTGCAAAAA+GGG | - | chr1_1:8279826-8279845 | Msa0005610:intron | 35.0% | |
!!! | ACTTTTGAGACAGAACTGTT+TGG | - | chr1_1:8279854-8279873 | Msa0005610:intron | 35.0% |
!!! | CCCAAATTTTAAGACAATGC+AGG | + | chr1_1:8280005-8280024 | None:intergenic | 35.0% |
!!! | CCTTACAAGTTGGTTTTGTA+AGG | + | chr1_1:8280043-8280062 | None:intergenic | 35.0% |
CCTTACAAAACCAACTTGTA+AGG | - | chr1_1:8280040-8280059 | Msa0005610:intron | 35.0% | |
AAAACCAACTTGTAAGGTCT+GGG | - | chr1_1:8280046-8280065 | Msa0005610:intron | 35.0% | |
TTAGTAGTCTCACATTGGAT+AGG | - | chr1_1:8280194-8280213 | Msa0005610:CDS | 35.0% | |
GGATATGTGTTTATAAGTGG+GGG | - | chr1_1:8280215-8280234 | Msa0005610:CDS | 35.0% | |
GAGAAAAAATGGCAAAGCTA+AGG | - | chr1_1:8280326-8280345 | Msa0005610:CDS | 35.0% | |
ATTGTCTCCTCTATTACAAG+GGG | + | chr1_1:8280489-8280508 | None:intergenic | 35.0% | |
CATTGTCTCCTCTATTACAA+GGG | + | chr1_1:8280490-8280509 | None:intergenic | 35.0% | |
TCATTGTCTCCTCTATTACA+AGG | + | chr1_1:8280491-8280510 | None:intergenic | 35.0% | |
ATGCTAACAACATCAGAAAG+TGG | + | chr1_1:8280558-8280577 | None:intergenic | 35.0% | |
ACTTTCTGATGTTGTTAGCA+TGG | - | chr1_1:8280557-8280576 | Msa0005610:CDS | 35.0% | |
CAAATCTCCTGAAGATATCA+TGG | + | chr1_1:8280637-8280656 | None:intergenic | 35.0% | |
CATGATATCTTCAGGAGATT+TGG | - | chr1_1:8280635-8280654 | Msa0005610:CDS | 35.0% | |
TGATATACTTGATCCTTCCA+AGG | - | chr1_1:8280674-8280693 | Msa0005610:CDS | 35.0% | |
! | GAAACATTGGGAGTATAAGC+AGG | - | chr1_1:8278872-8278891 | Msa0005610:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | - | chr1_1:8278925-8278944 | Msa0005610:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | - | chr1_1:8278926-8278945 | Msa0005610:CDS | 40.0% | |
GGATTTGAGGAAGAAAGCTA+CGG | - | chr1_1:8278993-8279012 | Msa0005610:intron | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | - | chr1_1:8279026-8279045 | Msa0005610:intron | 40.0% | |
!! | TATTGGATGGTGTTGCAATC+AGG | - | chr1_1:8279039-8279058 | Msa0005610:intron | 40.0% |
!! | AACGATTGGAGGGAAGTATT+CGG | - | chr1_1:8279156-8279175 | Msa0005610:intron | 40.0% |
TGAAAGACAATCATCACCTG+TGG | - | chr1_1:8279226-8279245 | Msa0005610:intron | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | - | chr1_1:8279501-8279520 | Msa0005610:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | + | chr1_1:8279506-8279525 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | - | chr1_1:8279574-8279593 | Msa0005610:CDS | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | - | chr1_1:8279577-8279596 | Msa0005610:CDS | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | + | chr1_1:8279748-8279767 | None:intergenic | 40.0% |
ACGGATGTTGAAATTTCCAC+GGG | - | chr1_1:8279758-8279777 | Msa0005610:intron | 40.0% | |
TGGAGTAAACCATATGGGAA+TGG | - | chr1_1:8279934-8279953 | Msa0005610:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | + | chr1_1:8279946-8279965 | None:intergenic | 40.0% |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | + | chr1_1:8280033-8280052 | None:intergenic | 40.0% |
CAAAACCAACTTGTAAGGTC+TGG | - | chr1_1:8280045-8280064 | Msa0005610:intron | 40.0% | |
AAGCCATATCTCATCCAATG+TGG | - | chr1_1:8280095-8280114 | Msa0005610:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | + | chr1_1:8280136-8280155 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | - | chr1_1:8280354-8280373 | Msa0005610:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | - | chr1_1:8280479-8280498 | Msa0005610:CDS | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | - | chr1_1:8280506-8280525 | Msa0005610:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | - | chr1_1:8280627-8280646 | Msa0005610:CDS | 40.0% | |
! | GAAACATTGGGAGTATAAGC+AGG | - | chr1_1:8278872-8278891 | Msa0005610:CDS | 40.0% |
TCGACAACCTTAGCAAACAA+AGG | - | chr1_1:8278925-8278944 | Msa0005610:CDS | 40.0% | |
CGACAACCTTAGCAAACAAA+GGG | - | chr1_1:8278926-8278945 | Msa0005610:CDS | 40.0% | |
GGATTTGAGGAAGAAAGCTA+CGG | - | chr1_1:8278993-8279012 | Msa0005610:intron | 40.0% | |
CATCCGGATTCAATATTGGA+TGG | - | chr1_1:8279026-8279045 | Msa0005610:intron | 40.0% | |
!! | TATTGGATGGTGTTGCAATC+AGG | - | chr1_1:8279039-8279058 | Msa0005610:intron | 40.0% |
!! | AACGATTGGAGGGAAGTATT+CGG | - | chr1_1:8279156-8279175 | Msa0005610:intron | 40.0% |
TGAAAGACAATCATCACCTG+TGG | - | chr1_1:8279226-8279245 | Msa0005610:intron | 40.0% | |
! | TGCCATTTCAATGAATTCCC+AGG | - | chr1_1:8279501-8279520 | Msa0005610:intron | 40.0% |
GTCCTGGGAATTCATTGAAA+TGG | + | chr1_1:8279506-8279525 | None:intergenic | 40.0% | |
GAGGAGGTAATGATTCTTGT+TGG | - | chr1_1:8279574-8279593 | Msa0005610:CDS | 40.0% | |
GAGGTAATGATTCTTGTTGG+AGG | - | chr1_1:8279577-8279596 | Msa0005610:CDS | 40.0% | |
!! | CAACATCCGTTTTTCCTATG+AGG | + | chr1_1:8279748-8279767 | None:intergenic | 40.0% |
ACGGATGTTGAAATTTCCAC+GGG | - | chr1_1:8279758-8279777 | Msa0005610:intron | 40.0% | |
TGGAGTAAACCATATGGGAA+TGG | - | chr1_1:8279934-8279953 | Msa0005610:intron | 40.0% | |
! | CGGTTATTTCCATTCCCATA+TGG | + | chr1_1:8279946-8279965 | None:intergenic | 40.0% |
!!! | TGGTTTTGTAAGGATGAGTC+AGG | + | chr1_1:8280033-8280052 | None:intergenic | 40.0% |
CAAAACCAACTTGTAAGGTC+TGG | - | chr1_1:8280045-8280064 | Msa0005610:intron | 40.0% | |
AAGCCATATCTCATCCAATG+TGG | - | chr1_1:8280095-8280114 | Msa0005610:intron | 40.0% | |
TGACCTTAGTTGCCTGATAT+CGG | + | chr1_1:8280136-8280155 | None:intergenic | 40.0% | |
AATTGCAGTTCAGAAAGCCA+AGG | - | chr1_1:8280354-8280373 | Msa0005610:CDS | 40.0% | |
TTCTTGACCCCTTGTAATAG+AGG | - | chr1_1:8280479-8280498 | Msa0005610:CDS | 40.0% | |
AATGAGAGCAAAACAAGTGC+TGG | - | chr1_1:8280506-8280525 | Msa0005610:CDS | 40.0% | |
TTGGATGCCATGATATCTTC+AGG | - | chr1_1:8280627-8280646 | Msa0005610:CDS | 40.0% | |
CAACCTTAGCAAACAAAGGG+AGG | - | chr1_1:8278929-8278948 | Msa0005610:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | + | chr1_1:8278935-8278954 | None:intergenic | 45.0% |
TTTGAGGAAGAAAGCTACGG+TGG | - | chr1_1:8278996-8279015 | Msa0005610:intron | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | - | chr1_1:8279010-8279029 | Msa0005610:intron | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | - | chr1_1:8279130-8279149 | Msa0005610:intron | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | + | chr1_1:8279245-8279264 | None:intergenic | 45.0% | |
ACCTGTTGTTATAGGCCATC+AGG | - | chr1_1:8279310-8279329 | Msa0005610:intron | 45.0% | |
ACCTGATGGCCTATAACAAC+AGG | + | chr1_1:8279314-8279333 | None:intergenic | 45.0% | |
ACTCGTTGTAGTGTACCTGA+TGG | + | chr1_1:8279328-8279347 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | + | chr1_1:8279521-8279540 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | - | chr1_1:8279590-8279609 | Msa0005610:CDS | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | - | chr1_1:8279739-8279758 | Msa0005610:intron | 45.0% | |
GTTGAAATTTCCACGGGATC+AGG | - | chr1_1:8279764-8279783 | Msa0005610:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | - | chr1_1:8279898-8279917 | Msa0005610:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | - | chr1_1:8279914-8279933 | Msa0005610:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | - | chr1_1:8279949-8279968 | Msa0005610:intron | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | + | chr1_1:8280101-8280120 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | + | chr1_1:8280112-8280131 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | + | chr1_1:8280121-8280140 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | - | chr1_1:8280121-8280140 | Msa0005610:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | + | chr1_1:8280135-8280154 | None:intergenic | 45.0% | |
TAGAGAACAAAGGCAGCTCT+TGG | - | chr1_1:8280608-8280627 | Msa0005610:CDS | 45.0% | |
CAACCTTAGCAAACAAAGGG+AGG | - | chr1_1:8278929-8278948 | Msa0005610:CDS | 45.0% | |
! | CTTCCTCCCTTTGTTTGCTA+AGG | + | chr1_1:8278935-8278954 | None:intergenic | 45.0% |
TTTGAGGAAGAAAGCTACGG+TGG | - | chr1_1:8278996-8279015 | Msa0005610:intron | 45.0% | |
CTACGGTGGAGAAAAACATC+CGG | - | chr1_1:8279010-8279029 | Msa0005610:intron | 45.0% | |
GAAACATCGGTCACGAGATA+TGG | - | chr1_1:8279130-8279149 | Msa0005610:intron | 45.0% | |
ATCTGTGACAGTTCTTCCAC+AGG | + | chr1_1:8279245-8279264 | None:intergenic | 45.0% | |
ACCTGTTGTTATAGGCCATC+AGG | - | chr1_1:8279310-8279329 | Msa0005610:intron | 45.0% | |
ACCTGATGGCCTATAACAAC+AGG | + | chr1_1:8279314-8279333 | None:intergenic | 45.0% | |
ACTCGTTGTAGTGTACCTGA+TGG | + | chr1_1:8279328-8279347 | None:intergenic | 45.0% | |
ATAGCGCAACTCTTTGTCCT+GGG | + | chr1_1:8279521-8279540 | None:intergenic | 45.0% | |
!! | TTGTTGGAGGTCTTGTTGCA+AGG | - | chr1_1:8279590-8279609 | Msa0005610:CDS | 45.0% |
CCAGGACCTCATAGGAAAAA+CGG | - | chr1_1:8279739-8279758 | Msa0005610:intron | 45.0% | |
GTTGAAATTTCCACGGGATC+AGG | - | chr1_1:8279764-8279783 | Msa0005610:intron | 45.0% | |
TGCAGAACCTGTGTTTAGCA+AGG | - | chr1_1:8279898-8279917 | Msa0005610:CDS | 45.0% | |
AGCAAGGCAGGAGAAACAAT+TGG | - | chr1_1:8279914-8279933 | Msa0005610:CDS | 45.0% | |
GGGAATGGAAATAACCGATC+AGG | - | chr1_1:8279949-8279968 | Msa0005610:intron | 45.0% | |
AGGCCACATTGGATGAGATA+TGG | + | chr1_1:8280101-8280120 | None:intergenic | 45.0% | |
TCACACTTCATAGGCCACAT+TGG | + | chr1_1:8280112-8280131 | None:intergenic | 45.0% | |
GATATCGGGTCACACTTCAT+AGG | + | chr1_1:8280121-8280140 | None:intergenic | 45.0% | |
ATGAAGTGTGACCCGATATC+AGG | - | chr1_1:8280121-8280140 | Msa0005610:intron | 45.0% | |
GACCTTAGTTGCCTGATATC+GGG | + | chr1_1:8280135-8280154 | None:intergenic | 45.0% | |
TAGAGAACAAAGGCAGCTCT+TGG | - | chr1_1:8280608-8280627 | Msa0005610:CDS | 45.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | + | chr1_1:8278911-8278930 | None:intergenic | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | + | chr1_1:8279522-8279541 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | + | chr1_1:8279742-8279761 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | - | chr1_1:8279902-8279921 | Msa0005610:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | + | chr1_1:8279908-8279927 | None:intergenic | 50.0% | |
GCAACCCAGACCTTACAAGT+TGG | + | chr1_1:8280053-8280072 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | - | chr1_1:8280130-8280149 | Msa0005610:CDS | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | - | chr1_1:8280155-8280174 | Msa0005610:CDS | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | - | chr1_1:8280156-8280175 | Msa0005610:CDS | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | - | chr1_1:8280164-8280183 | Msa0005610:CDS | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | - | chr1_1:8280683-8280702 | Msa0005610:CDS | 50.0% | |
TGTCGAGCTCTTCTCGAAGA+AGG | + | chr1_1:8278911-8278930 | None:intergenic | 50.0% | |
GATAGCGCAACTCTTTGTCC+TGG | + | chr1_1:8279522-8279541 | None:intergenic | 50.0% | |
!! | CCGTTTTTCCTATGAGGTCC+TGG | + | chr1_1:8279742-8279761 | None:intergenic | 50.0% |
GAACCTGTGTTTAGCAAGGC+AGG | - | chr1_1:8279902-8279921 | Msa0005610:CDS | 50.0% | |
TCTCCTGCCTTGCTAAACAC+AGG | + | chr1_1:8279908-8279927 | None:intergenic | 50.0% | |
GCAACCCAGACCTTACAAGT+TGG | + | chr1_1:8280053-8280072 | None:intergenic | 50.0% | |
GACCCGATATCAGGCAACTA+AGG | - | chr1_1:8280130-8280149 | Msa0005610:CDS | 50.0% | |
ACGCTTCAGATGTCTAGTCC+TGG | - | chr1_1:8280155-8280174 | Msa0005610:CDS | 50.0% | |
CGCTTCAGATGTCTAGTCCT+GGG | - | chr1_1:8280156-8280175 | Msa0005610:CDS | 50.0% | |
ATGTCTAGTCCTGGGCGTAA+GGG | - | chr1_1:8280164-8280183 | Msa0005610:CDS | 50.0% | |
TGATCCTTCCAAGGCTGAGT+CGG | - | chr1_1:8280683-8280702 | Msa0005610:CDS | 50.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | - | chr1_1:8280163-8280182 | Msa0005610:CDS | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | + | chr1_1:8280176-8280195 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | - | chr1_1:8280684-8280703 | Msa0005610:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | + | chr1_1:8280690-8280709 | None:intergenic | 55.0% | |
GATGTCTAGTCCTGGGCGTA+AGG | - | chr1_1:8280163-8280182 | Msa0005610:CDS | 55.0% | |
AACAAATCGCCCTTACGCCC+AGG | + | chr1_1:8280176-8280195 | None:intergenic | 55.0% | |
GATCCTTCCAAGGCTGAGTC+GGG | - | chr1_1:8280684-8280703 | Msa0005610:CDS | 55.0% | |
TAACCCGACTCAGCCTTGGA+AGG | + | chr1_1:8280690-8280709 | None:intergenic | 55.0% | |
TTCCACGGGATCAGGTGCGA+AGG | - | chr1_1:8279772-8279791 | Msa0005610:intron | 60.0% | |
TTCCTTCGCACCTGATCCCG+TGG | + | chr1_1:8279777-8279796 | None:intergenic | 60.0% | |
TTCCACGGGATCAGGTGCGA+AGG | - | chr1_1:8279772-8279791 | Msa0005610:intron | 60.0% | |
TTCCTTCGCACCTGATCCCG+TGG | + | chr1_1:8279777-8279796 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 8278750 | 8280710 | 8278750 | ID=Msa0005610;Name=Msa0005610 |
chr1_1 | mRNA | 8278750 | 8280710 | 8278750 | ID=Msa0005610-mRNA-1;Parent=Msa0005610;Name=Msa0005610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|379 |
chr1_1 | exon | 8280129 | 8280710 | 8280129 | ID=Msa0005610-mRNA-1:exon:2914;Parent=Msa0005610-mRNA-1 |
chr1_1 | exon | 8279881 | 8279937 | 8279881 | ID=Msa0005610-mRNA-1:exon:2913;Parent=Msa0005610-mRNA-1 |
chr1_1 | exon | 8279523 | 8279717 | 8279523 | ID=Msa0005610-mRNA-1:exon:2912;Parent=Msa0005610-mRNA-1 |
chr1_1 | exon | 8279051 | 8279144 | 8279051 | ID=Msa0005610-mRNA-1:exon:2911;Parent=Msa0005610-mRNA-1 |
chr1_1 | exon | 8278750 | 8278961 | 8278750 | ID=Msa0005610-mRNA-1:exon:2910;Parent=Msa0005610-mRNA-1 |
chr1_1 | CDS | 8280129 | 8280710 | 8280129 | ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1 |
chr1_1 | CDS | 8279881 | 8279937 | 8279881 | ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1 |
chr1_1 | CDS | 8279523 | 8279717 | 8279523 | ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1 |
chr1_1 | CDS | 8279051 | 8279144 | 8279051 | ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1 |
chr1_1 | CDS | 8278750 | 8278961 | 8278750 | ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1 |
Gene Sequence |
Protein sequence |