AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005610 MtrunA17_Chr1g0150531 88.462 390 33 2 1 379 1 389 0.0 690
Msa0005610 MtrunA17_Chr1g0150511 80.952 399 55 3 2 379 43 441 0.0 632
Msa0005610 MtrunA17_Chr3g0136601 74.623 398 80 4 2 379 39 435 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005610 AT5G10720.1 61.111 396 130 5 2 379 42 431 3.71e-151 450
Msa0005610 AT5G10680.2 46.212 132 53 4 1 122 37 160 1.20e-23 98.6
Msa0005610 AT5G10680.1 46.212 132 53 4 1 122 37 160 1.20e-23 98.6

Find 57 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATGCACCTGTTGTTAT+AGG 0.182020 1_1:-8280136 Msa0005610:CDS
CTTTGAAAATCAGCTATAAT+TGG 0.203037 1_1:+8280646 None:intergenic
AATAAAACTATTTACATTAC+AGG 0.248651 1_1:-8279050 Msa0005610:intron
CATGATATCTTCAGGAGATT+TGG 0.274046 1_1:-8278803 Msa0005610:CDS
AGAAAGGAATACCTGCAAAA+AGG 0.324513 1_1:-8279613 Msa0005610:CDS
AAAACATCCGGATTCAATAT+TGG 0.341750 1_1:-8280416 Msa0005610:CDS
AGAAGAAGTAACAATCTTAG+AGG 0.346203 1_1:-8280671 Msa0005610:CDS
GAAACATCGGTCACGAGATA+TGG 0.358103 1_1:-8280308 Msa0005610:CDS
AGTATGATGATGTTGTTTAC+TGG 0.359184 1_1:-8280330 Msa0005610:CDS
TTTATTAAGTTCTGTTTCCT+TGG 0.367714 1_1:+8279067 None:intergenic
AAGAGAGAAGTAATGGAGAA+AGG 0.411442 1_1:-8279629 Msa0005610:CDS
CTTCCTCCCTTTGTTTGCTA+AGG 0.415873 1_1:+8280506 None:intergenic
GTTGAAATTTCCACGGGATC+AGG 0.422798 1_1:-8279674 Msa0005610:CDS
TATTGGATGGTGTTGCAATC+AGG 0.426610 1_1:-8280399 Msa0005610:CDS
AACGATTGGAGGGAAGTATT+CGG 0.430328 1_1:-8280282 Msa0005610:CDS
ATAAATTTCCAGGACCTCAT+AGG 0.439968 1_1:-8279707 Msa0005610:intron
GAGATACTTAAAGACAATAA+TGG 0.444436 1_1:-8280466 Msa0005610:CDS
TTGGATGCCATGATATCTTC+AGG 0.452888 1_1:-8278811 Msa0005610:CDS
TAAAGACAATAATGGATTTG+AGG 0.457522 1_1:-8280458 Msa0005610:CDS
TAGAGAACAAAGGCAGCTCT+TGG 0.468770 1_1:-8278830 Msa0005610:CDS
GATCCTTCCAAGGCTGAGTC+GGG 0.469731 1_1:-8278754 Msa0005610:CDS
CAAATCTCCTGAAGATATCA+TGG 0.470277 1_1:+8278804 None:intergenic
AGCAAGGCAGGAGAAACAAT+TGG 0.472538 1_1:-8279524 Msa0005610:CDS
ACCTGTTGTTATAGGCCATC+AGG 0.477859 1_1:-8280128 Msa0005610:intron
TTTCTAACCCGACTCAGCCT+TGG 0.478360 1_1:+8278747 None:intergenic
AGCTAATCTCACGAAACATT+GGG 0.482663 1_1:-8280578 Msa0005610:CDS
ACCTGATGGCCTATAACAAC+AGG 0.486112 1_1:+8280127 None:intergenic
GAACCTGTGTTTAGCAAGGC+AGG 0.487467 1_1:-8279536 Msa0005610:CDS
TGATCCTTCCAAGGCTGAGT+CGG 0.495766 1_1:-8278755 Msa0005610:CDS
ACACCATCCAATATTGAATC+CGG 0.501464 1_1:+8280409 None:intergenic
AAACAAAAGAATTGAAATTG+AGG 0.507015 1_1:-8280356 Msa0005610:CDS
TGTCGAGCTCTTCTCGAAGA+AGG 0.522863 1_1:+8280530 None:intergenic
TAGCTAATCTCACGAAACAT+TGG 0.523948 1_1:-8280579 Msa0005610:CDS
AATGAGAGCAAAACAAGTGC+TGG 0.527084 1_1:-8278932 Msa0005610:CDS
ACTTTCTGATGTTGTTAGCA+TGG 0.533367 1_1:-8278881 Msa0005610:CDS
CGACAACCTTAGCAAACAAA+GGG 0.535427 1_1:-8280512 Msa0005610:CDS
TCTCCTGCCTTGCTAAACAC+AGG 0.549002 1_1:+8279533 None:intergenic
AACGGATGTTGAAATTTCCA+CGG 0.549138 1_1:-8279681 Msa0005610:CDS
CATCCGGATTCAATATTGGA+TGG 0.554723 1_1:-8280412 Msa0005610:CDS
GAAACATTGGGAGTATAAGC+AGG 0.554790 1_1:-8280566 Msa0005610:CDS
TGATATACTTGATCCTTCCA+AGG 0.562404 1_1:-8278764 Msa0005610:CDS
ATCTGTGACAGTTCTTCCAC+AGG 0.563140 1_1:+8280196 None:intergenic
ACGGATGTTGAAATTTCCAC+GGG 0.578700 1_1:-8279680 Msa0005610:CDS
TTCCTTCGCACCTGATCCCG+TGG 0.579266 1_1:+8279664 None:intergenic
ATGCTAACAACATCAGAAAG+TGG 0.579722 1_1:+8278883 None:intergenic
TAACCCGACTCAGCCTTGGA+AGG 0.583784 1_1:+8278751 None:intergenic
TCGACAACCTTAGCAAACAA+AGG 0.586507 1_1:-8280513 Msa0005610:CDS
TTCCACGGGATCAGGTGCGA+AGG 0.600321 1_1:-8279666 Msa0005610:CDS
TGCAGAACCTGTGTTTAGCA+AGG 0.605158 1_1:-8279540 Msa0005610:CDS
ATGTTGTTTACTGGAAACAT+CGG 0.642416 1_1:-8280321 Msa0005610:CDS
CAACCTTAGCAAACAAAGGG+AGG 0.643459 1_1:-8280509 Msa0005610:CDS
GGATTTGAGGAAGAAAGCTA+CGG 0.643602 1_1:-8280445 Msa0005610:CDS
TGAAAGACAATCATCACCTG+TGG 0.646063 1_1:-8280212 Msa0005610:CDS
AATTGCAGTTCAGAAAGCCA+AGG 0.648370 1_1:-8279084 Msa0005610:CDS
GTAAACAACATCATCATACT+CGG 0.655371 1_1:+8280333 None:intergenic
TTTGAGGAAGAAAGCTACGG+TGG 0.675740 1_1:-8280442 Msa0005610:CDS
CAAAACTTGATAGAGAACAA+AGG 0.676780 1_1:-8278840 Msa0005610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAAATTTGTTTATAAGT+GGG + chr1_1:8280077-8280096 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG - chr1_1:8280388-8280407 Msa0005610:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG + chr1_1:8280428-8280447 None:intergenic 15.0%
!!! TTGTAAATTTGTTTATAAGT+GGG + chr1_1:8280077-8280096 None:intergenic 15.0%
!! AATAAAACTATTTACATTAC+AGG - chr1_1:8280388-8280407 Msa0005610:CDS 15.0%
!! GAAATTCATAAATCAAAATT+TGG + chr1_1:8280428-8280447 None:intergenic 15.0%
!! AAACAAAAGAATTGAAATTG+AGG - chr1_1:8279082-8279101 Msa0005610:CDS 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG + chr1_1:8280076-8280095 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG + chr1_1:8280078-8280097 None:intergenic 20.0%
!! AAACAAAAGAATTGAAATTG+AGG - chr1_1:8279082-8279101 Msa0005610:CDS 20.0%
!!! TGTAAATTTGTTTATAAGTG+GGG + chr1_1:8280076-8280095 None:intergenic 20.0%
!!! CTTGTAAATTTGTTTATAAG+TGG + chr1_1:8280078-8280097 None:intergenic 20.0%
!! CTTTGAAAATCAGCTATAAT+TGG + chr1_1:8278795-8278814 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG - chr1_1:8278972-8278991 Msa0005610:intron 25.0%
!!! TAAAGACAATAATGGATTTG+AGG - chr1_1:8278980-8278999 Msa0005610:intron 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG - chr1_1:8279802-8279821 Msa0005610:intron 25.0%
!! ATTGTCTTAAAATTTGGGTT+AGG - chr1_1:8280007-8280026 Msa0005610:intron 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG + chr1_1:8280075-8280094 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG - chr1_1:8280212-8280231 Msa0005610:CDS 25.0%
! TAGGATATGTGTTTATAAGT+GGG - chr1_1:8280213-8280232 Msa0005610:CDS 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG + chr1_1:8280250-8280269 None:intergenic 25.0%
!!! TAATTTTGACAAACAATTGC+AGG - chr1_1:8280294-8280313 Msa0005610:CDS 25.0%
! TTTATTAAGTTCTGTTTCCT+TGG + chr1_1:8280374-8280393 None:intergenic 25.0%
!! CTTTGAAAATCAGCTATAAT+TGG + chr1_1:8278795-8278814 None:intergenic 25.0%
! GAGATACTTAAAGACAATAA+TGG - chr1_1:8278972-8278991 Msa0005610:intron 25.0%
!!! TAAAGACAATAATGGATTTG+AGG - chr1_1:8278980-8278999 Msa0005610:intron 25.0%
!!! AGATTTTAAGAGAGAAGTAA+TGG - chr1_1:8279802-8279821 Msa0005610:intron 25.0%
!! ATTGTCTTAAAATTTGGGTT+AGG - chr1_1:8280007-8280026 Msa0005610:intron 25.0%
!! GTAAATTTGTTTATAAGTGG+GGG + chr1_1:8280075-8280094 None:intergenic 25.0%
! ATAGGATATGTGTTTATAAG+TGG - chr1_1:8280212-8280231 Msa0005610:CDS 25.0%
! TAGGATATGTGTTTATAAGT+GGG - chr1_1:8280213-8280232 Msa0005610:CDS 25.0%
!!! GATTGAAAGGTATTAGAATT+TGG + chr1_1:8280250-8280269 None:intergenic 25.0%
!!! TAATTTTGACAAACAATTGC+AGG - chr1_1:8280294-8280313 Msa0005610:CDS 25.0%
! TTTATTAAGTTCTGTTTCCT+TGG + chr1_1:8280374-8280393 None:intergenic 25.0%
AGAAGAAGTAACAATCTTAG+AGG - chr1_1:8278767-8278786 Msa0005610:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG - chr1_1:8278800-8278819 Msa0005610:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG - chr1_1:8279022-8279041 Msa0005610:intron 30.0%
GTAAACAACATCATCATACT+CGG + chr1_1:8279108-8279127 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG - chr1_1:8279108-8279127 Msa0005610:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG - chr1_1:8279117-8279136 Msa0005610:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG + chr1_1:8279558-8279577 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG - chr1_1:8279555-8279574 Msa0005610:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG - chr1_1:8279558-8279577 Msa0005610:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG + chr1_1:8279565-8279584 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG - chr1_1:8279721-8279740 Msa0005610:intron 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG + chr1_1:8279839-8279858 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG - chr1_1:8279928-8279947 Msa0005610:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG - chr1_1:8279929-8279948 Msa0005610:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG + chr1_1:8279966-8279985 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG - chr1_1:8279967-8279986 Msa0005610:intron 30.0%
ACCTGCATTGTCTTAAAATT+TGG - chr1_1:8280001-8280020 Msa0005610:intron 30.0%
CCTGCATTGTCTTAAAATTT+GGG - chr1_1:8280002-8280021 Msa0005610:intron 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG - chr1_1:8280189-8280208 Msa0005610:CDS 30.0%
AGGATATGTGTTTATAAGTG+GGG - chr1_1:8280214-8280233 Msa0005610:CDS 30.0%
TGCACAAAAACAAGATTGAA+AGG + chr1_1:8280263-8280282 None:intergenic 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG - chr1_1:8280315-8280334 Msa0005610:CDS 30.0%
AGAAAAAATGGCAAAGCTAA+GGG - chr1_1:8280327-8280346 Msa0005610:CDS 30.0%
CAAAACTTGATAGAGAACAA+AGG - chr1_1:8280598-8280617 Msa0005610:CDS 30.0%
AGAAGAAGTAACAATCTTAG+AGG - chr1_1:8278767-8278786 Msa0005610:CDS 30.0%
!! AGCTGATTTTCAAAGAATTG+TGG - chr1_1:8278800-8278819 Msa0005610:CDS 30.0%
AAAACATCCGGATTCAATAT+TGG - chr1_1:8279022-8279041 Msa0005610:intron 30.0%
GTAAACAACATCATCATACT+CGG + chr1_1:8279108-8279127 None:intergenic 30.0%
! AGTATGATGATGTTGTTTAC+TGG - chr1_1:8279108-8279127 Msa0005610:CDS 30.0%
! ATGTTGTTTACTGGAAACAT+CGG - chr1_1:8279117-8279136 Msa0005610:CDS 30.0%
! CCTCTTTTAAACTTGGAAAA+TGG + chr1_1:8279558-8279577 None:intergenic 30.0%
! CCATTTTCCAAGTTTAAAAG+AGG - chr1_1:8279555-8279574 Msa0005610:CDS 30.0%
! TTTTCCAAGTTTAAAAGAGG+AGG - chr1_1:8279558-8279577 Msa0005610:CDS 30.0%
! ATTACCTCCTCTTTTAAACT+TGG + chr1_1:8279565-8279584 None:intergenic 30.0%
TTACTTGCACATAAATTTCC+AGG - chr1_1:8279721-8279740 Msa0005610:intron 30.0%
!! AAAGTTATTTCCCTTTTTGC+AGG + chr1_1:8279839-8279858 None:intergenic 30.0%
AACAATTGGAGTAAACCATA+TGG - chr1_1:8279928-8279947 Msa0005610:intron 30.0%
ACAATTGGAGTAAACCATAT+GGG - chr1_1:8279929-8279948 Msa0005610:intron 30.0%
! AGTAACAGTTTTTACCTGAT+CGG + chr1_1:8279966-8279985 None:intergenic 30.0%
! TCAGGTAAAAACTGTTACTT+TGG - chr1_1:8279967-8279986 Msa0005610:intron 30.0%
ACCTGCATTGTCTTAAAATT+TGG - chr1_1:8280001-8280020 Msa0005610:intron 30.0%
CCTGCATTGTCTTAAAATTT+GGG - chr1_1:8280002-8280021 Msa0005610:intron 30.0%
! ATTTGTTAGTAGTCTCACAT+TGG - chr1_1:8280189-8280208 Msa0005610:CDS 30.0%
AGGATATGTGTTTATAAGTG+GGG - chr1_1:8280214-8280233 Msa0005610:CDS 30.0%
TGCACAAAAACAAGATTGAA+AGG + chr1_1:8280263-8280282 None:intergenic 30.0%
GGTGAGAAAAAGAGAAAAAA+TGG - chr1_1:8280315-8280334 Msa0005610:CDS 30.0%
AGAAAAAATGGCAAAGCTAA+GGG - chr1_1:8280327-8280346 Msa0005610:CDS 30.0%
CAAAACTTGATAGAGAACAA+AGG - chr1_1:8280598-8280617 Msa0005610:CDS 30.0%
TAGCTAATCTCACGAAACAT+TGG - chr1_1:8278859-8278878 Msa0005610:CDS 35.0%
AGCTAATCTCACGAAACATT+GGG - chr1_1:8278860-8278879 Msa0005610:CDS 35.0%
ACACCATCCAATATTGAATC+CGG + chr1_1:8279032-8279051 None:intergenic 35.0%
ACGAGATATGGAAAAACGAT+TGG - chr1_1:8279142-8279161 Msa0005610:intron 35.0%
AGATATGGAAAAACGATTGG+AGG - chr1_1:8279145-8279164 Msa0005610:intron 35.0%
GATATGGAAAAACGATTGGA+GGG - chr1_1:8279146-8279165 Msa0005610:intron 35.0%
CAAAATGCACCTGTTGTTAT+AGG - chr1_1:8279302-8279321 Msa0005610:intron 35.0%
ATAAATTTCCAGGACCTCAT+AGG - chr1_1:8279731-8279750 Msa0005610:intron 35.0%
AACGGATGTTGAAATTTCCA+CGG - chr1_1:8279757-8279776 Msa0005610:intron 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG - chr1_1:8279809-8279828 Msa0005610:intron 35.0%
AGAAAGGAATACCTGCAAAA+AGG - chr1_1:8279825-8279844 Msa0005610:intron 35.0%
GAAAGGAATACCTGCAAAAA+GGG - chr1_1:8279826-8279845 Msa0005610:intron 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG - chr1_1:8279854-8279873 Msa0005610:intron 35.0%
!!! CCCAAATTTTAAGACAATGC+AGG + chr1_1:8280005-8280024 None:intergenic 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG + chr1_1:8280043-8280062 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG - chr1_1:8280040-8280059 Msa0005610:intron 35.0%
AAAACCAACTTGTAAGGTCT+GGG - chr1_1:8280046-8280065 Msa0005610:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG - chr1_1:8280194-8280213 Msa0005610:CDS 35.0%
GGATATGTGTTTATAAGTGG+GGG - chr1_1:8280215-8280234 Msa0005610:CDS 35.0%
GAGAAAAAATGGCAAAGCTA+AGG - chr1_1:8280326-8280345 Msa0005610:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG + chr1_1:8280489-8280508 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG + chr1_1:8280490-8280509 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG + chr1_1:8280491-8280510 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG + chr1_1:8280558-8280577 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG - chr1_1:8280557-8280576 Msa0005610:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG + chr1_1:8280637-8280656 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG - chr1_1:8280635-8280654 Msa0005610:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG - chr1_1:8280674-8280693 Msa0005610:CDS 35.0%
TAGCTAATCTCACGAAACAT+TGG - chr1_1:8278859-8278878 Msa0005610:CDS 35.0%
AGCTAATCTCACGAAACATT+GGG - chr1_1:8278860-8278879 Msa0005610:CDS 35.0%
ACACCATCCAATATTGAATC+CGG + chr1_1:8279032-8279051 None:intergenic 35.0%
ACGAGATATGGAAAAACGAT+TGG - chr1_1:8279142-8279161 Msa0005610:intron 35.0%
AGATATGGAAAAACGATTGG+AGG - chr1_1:8279145-8279164 Msa0005610:intron 35.0%
GATATGGAAAAACGATTGGA+GGG - chr1_1:8279146-8279165 Msa0005610:intron 35.0%
CAAAATGCACCTGTTGTTAT+AGG - chr1_1:8279302-8279321 Msa0005610:intron 35.0%
ATAAATTTCCAGGACCTCAT+AGG - chr1_1:8279731-8279750 Msa0005610:intron 35.0%
AACGGATGTTGAAATTTCCA+CGG - chr1_1:8279757-8279776 Msa0005610:intron 35.0%
! AAGAGAGAAGTAATGGAGAA+AGG - chr1_1:8279809-8279828 Msa0005610:intron 35.0%
AGAAAGGAATACCTGCAAAA+AGG - chr1_1:8279825-8279844 Msa0005610:intron 35.0%
GAAAGGAATACCTGCAAAAA+GGG - chr1_1:8279826-8279845 Msa0005610:intron 35.0%
!!! ACTTTTGAGACAGAACTGTT+TGG - chr1_1:8279854-8279873 Msa0005610:intron 35.0%
!!! CCCAAATTTTAAGACAATGC+AGG + chr1_1:8280005-8280024 None:intergenic 35.0%
!!! CCTTACAAGTTGGTTTTGTA+AGG + chr1_1:8280043-8280062 None:intergenic 35.0%
CCTTACAAAACCAACTTGTA+AGG - chr1_1:8280040-8280059 Msa0005610:intron 35.0%
AAAACCAACTTGTAAGGTCT+GGG - chr1_1:8280046-8280065 Msa0005610:intron 35.0%
TTAGTAGTCTCACATTGGAT+AGG - chr1_1:8280194-8280213 Msa0005610:CDS 35.0%
GGATATGTGTTTATAAGTGG+GGG - chr1_1:8280215-8280234 Msa0005610:CDS 35.0%
GAGAAAAAATGGCAAAGCTA+AGG - chr1_1:8280326-8280345 Msa0005610:CDS 35.0%
ATTGTCTCCTCTATTACAAG+GGG + chr1_1:8280489-8280508 None:intergenic 35.0%
CATTGTCTCCTCTATTACAA+GGG + chr1_1:8280490-8280509 None:intergenic 35.0%
TCATTGTCTCCTCTATTACA+AGG + chr1_1:8280491-8280510 None:intergenic 35.0%
ATGCTAACAACATCAGAAAG+TGG + chr1_1:8280558-8280577 None:intergenic 35.0%
ACTTTCTGATGTTGTTAGCA+TGG - chr1_1:8280557-8280576 Msa0005610:CDS 35.0%
CAAATCTCCTGAAGATATCA+TGG + chr1_1:8280637-8280656 None:intergenic 35.0%
CATGATATCTTCAGGAGATT+TGG - chr1_1:8280635-8280654 Msa0005610:CDS 35.0%
TGATATACTTGATCCTTCCA+AGG - chr1_1:8280674-8280693 Msa0005610:CDS 35.0%
! GAAACATTGGGAGTATAAGC+AGG - chr1_1:8278872-8278891 Msa0005610:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG - chr1_1:8278925-8278944 Msa0005610:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG - chr1_1:8278926-8278945 Msa0005610:CDS 40.0%
GGATTTGAGGAAGAAAGCTA+CGG - chr1_1:8278993-8279012 Msa0005610:intron 40.0%
CATCCGGATTCAATATTGGA+TGG - chr1_1:8279026-8279045 Msa0005610:intron 40.0%
!! TATTGGATGGTGTTGCAATC+AGG - chr1_1:8279039-8279058 Msa0005610:intron 40.0%
!! AACGATTGGAGGGAAGTATT+CGG - chr1_1:8279156-8279175 Msa0005610:intron 40.0%
TGAAAGACAATCATCACCTG+TGG - chr1_1:8279226-8279245 Msa0005610:intron 40.0%
! TGCCATTTCAATGAATTCCC+AGG - chr1_1:8279501-8279520 Msa0005610:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG + chr1_1:8279506-8279525 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG - chr1_1:8279574-8279593 Msa0005610:CDS 40.0%
GAGGTAATGATTCTTGTTGG+AGG - chr1_1:8279577-8279596 Msa0005610:CDS 40.0%
!! CAACATCCGTTTTTCCTATG+AGG + chr1_1:8279748-8279767 None:intergenic 40.0%
ACGGATGTTGAAATTTCCAC+GGG - chr1_1:8279758-8279777 Msa0005610:intron 40.0%
TGGAGTAAACCATATGGGAA+TGG - chr1_1:8279934-8279953 Msa0005610:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG + chr1_1:8279946-8279965 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG + chr1_1:8280033-8280052 None:intergenic 40.0%
CAAAACCAACTTGTAAGGTC+TGG - chr1_1:8280045-8280064 Msa0005610:intron 40.0%
AAGCCATATCTCATCCAATG+TGG - chr1_1:8280095-8280114 Msa0005610:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG + chr1_1:8280136-8280155 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG - chr1_1:8280354-8280373 Msa0005610:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG - chr1_1:8280479-8280498 Msa0005610:CDS 40.0%
AATGAGAGCAAAACAAGTGC+TGG - chr1_1:8280506-8280525 Msa0005610:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG - chr1_1:8280627-8280646 Msa0005610:CDS 40.0%
! GAAACATTGGGAGTATAAGC+AGG - chr1_1:8278872-8278891 Msa0005610:CDS 40.0%
TCGACAACCTTAGCAAACAA+AGG - chr1_1:8278925-8278944 Msa0005610:CDS 40.0%
CGACAACCTTAGCAAACAAA+GGG - chr1_1:8278926-8278945 Msa0005610:CDS 40.0%
GGATTTGAGGAAGAAAGCTA+CGG - chr1_1:8278993-8279012 Msa0005610:intron 40.0%
CATCCGGATTCAATATTGGA+TGG - chr1_1:8279026-8279045 Msa0005610:intron 40.0%
!! TATTGGATGGTGTTGCAATC+AGG - chr1_1:8279039-8279058 Msa0005610:intron 40.0%
!! AACGATTGGAGGGAAGTATT+CGG - chr1_1:8279156-8279175 Msa0005610:intron 40.0%
TGAAAGACAATCATCACCTG+TGG - chr1_1:8279226-8279245 Msa0005610:intron 40.0%
! TGCCATTTCAATGAATTCCC+AGG - chr1_1:8279501-8279520 Msa0005610:intron 40.0%
GTCCTGGGAATTCATTGAAA+TGG + chr1_1:8279506-8279525 None:intergenic 40.0%
GAGGAGGTAATGATTCTTGT+TGG - chr1_1:8279574-8279593 Msa0005610:CDS 40.0%
GAGGTAATGATTCTTGTTGG+AGG - chr1_1:8279577-8279596 Msa0005610:CDS 40.0%
!! CAACATCCGTTTTTCCTATG+AGG + chr1_1:8279748-8279767 None:intergenic 40.0%
ACGGATGTTGAAATTTCCAC+GGG - chr1_1:8279758-8279777 Msa0005610:intron 40.0%
TGGAGTAAACCATATGGGAA+TGG - chr1_1:8279934-8279953 Msa0005610:intron 40.0%
! CGGTTATTTCCATTCCCATA+TGG + chr1_1:8279946-8279965 None:intergenic 40.0%
!!! TGGTTTTGTAAGGATGAGTC+AGG + chr1_1:8280033-8280052 None:intergenic 40.0%
CAAAACCAACTTGTAAGGTC+TGG - chr1_1:8280045-8280064 Msa0005610:intron 40.0%
AAGCCATATCTCATCCAATG+TGG - chr1_1:8280095-8280114 Msa0005610:intron 40.0%
TGACCTTAGTTGCCTGATAT+CGG + chr1_1:8280136-8280155 None:intergenic 40.0%
AATTGCAGTTCAGAAAGCCA+AGG - chr1_1:8280354-8280373 Msa0005610:CDS 40.0%
TTCTTGACCCCTTGTAATAG+AGG - chr1_1:8280479-8280498 Msa0005610:CDS 40.0%
AATGAGAGCAAAACAAGTGC+TGG - chr1_1:8280506-8280525 Msa0005610:CDS 40.0%
TTGGATGCCATGATATCTTC+AGG - chr1_1:8280627-8280646 Msa0005610:CDS 40.0%
CAACCTTAGCAAACAAAGGG+AGG - chr1_1:8278929-8278948 Msa0005610:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG + chr1_1:8278935-8278954 None:intergenic 45.0%
TTTGAGGAAGAAAGCTACGG+TGG - chr1_1:8278996-8279015 Msa0005610:intron 45.0%
CTACGGTGGAGAAAAACATC+CGG - chr1_1:8279010-8279029 Msa0005610:intron 45.0%
GAAACATCGGTCACGAGATA+TGG - chr1_1:8279130-8279149 Msa0005610:intron 45.0%
ATCTGTGACAGTTCTTCCAC+AGG + chr1_1:8279245-8279264 None:intergenic 45.0%
ACCTGTTGTTATAGGCCATC+AGG - chr1_1:8279310-8279329 Msa0005610:intron 45.0%
ACCTGATGGCCTATAACAAC+AGG + chr1_1:8279314-8279333 None:intergenic 45.0%
ACTCGTTGTAGTGTACCTGA+TGG + chr1_1:8279328-8279347 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG + chr1_1:8279521-8279540 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG - chr1_1:8279590-8279609 Msa0005610:CDS 45.0%
CCAGGACCTCATAGGAAAAA+CGG - chr1_1:8279739-8279758 Msa0005610:intron 45.0%
GTTGAAATTTCCACGGGATC+AGG - chr1_1:8279764-8279783 Msa0005610:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG - chr1_1:8279898-8279917 Msa0005610:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG - chr1_1:8279914-8279933 Msa0005610:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG - chr1_1:8279949-8279968 Msa0005610:intron 45.0%
AGGCCACATTGGATGAGATA+TGG + chr1_1:8280101-8280120 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG + chr1_1:8280112-8280131 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG + chr1_1:8280121-8280140 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG - chr1_1:8280121-8280140 Msa0005610:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG + chr1_1:8280135-8280154 None:intergenic 45.0%
TAGAGAACAAAGGCAGCTCT+TGG - chr1_1:8280608-8280627 Msa0005610:CDS 45.0%
CAACCTTAGCAAACAAAGGG+AGG - chr1_1:8278929-8278948 Msa0005610:CDS 45.0%
! CTTCCTCCCTTTGTTTGCTA+AGG + chr1_1:8278935-8278954 None:intergenic 45.0%
TTTGAGGAAGAAAGCTACGG+TGG - chr1_1:8278996-8279015 Msa0005610:intron 45.0%
CTACGGTGGAGAAAAACATC+CGG - chr1_1:8279010-8279029 Msa0005610:intron 45.0%
GAAACATCGGTCACGAGATA+TGG - chr1_1:8279130-8279149 Msa0005610:intron 45.0%
ATCTGTGACAGTTCTTCCAC+AGG + chr1_1:8279245-8279264 None:intergenic 45.0%
ACCTGTTGTTATAGGCCATC+AGG - chr1_1:8279310-8279329 Msa0005610:intron 45.0%
ACCTGATGGCCTATAACAAC+AGG + chr1_1:8279314-8279333 None:intergenic 45.0%
ACTCGTTGTAGTGTACCTGA+TGG + chr1_1:8279328-8279347 None:intergenic 45.0%
ATAGCGCAACTCTTTGTCCT+GGG + chr1_1:8279521-8279540 None:intergenic 45.0%
!! TTGTTGGAGGTCTTGTTGCA+AGG - chr1_1:8279590-8279609 Msa0005610:CDS 45.0%
CCAGGACCTCATAGGAAAAA+CGG - chr1_1:8279739-8279758 Msa0005610:intron 45.0%
GTTGAAATTTCCACGGGATC+AGG - chr1_1:8279764-8279783 Msa0005610:intron 45.0%
TGCAGAACCTGTGTTTAGCA+AGG - chr1_1:8279898-8279917 Msa0005610:CDS 45.0%
AGCAAGGCAGGAGAAACAAT+TGG - chr1_1:8279914-8279933 Msa0005610:CDS 45.0%
GGGAATGGAAATAACCGATC+AGG - chr1_1:8279949-8279968 Msa0005610:intron 45.0%
AGGCCACATTGGATGAGATA+TGG + chr1_1:8280101-8280120 None:intergenic 45.0%
TCACACTTCATAGGCCACAT+TGG + chr1_1:8280112-8280131 None:intergenic 45.0%
GATATCGGGTCACACTTCAT+AGG + chr1_1:8280121-8280140 None:intergenic 45.0%
ATGAAGTGTGACCCGATATC+AGG - chr1_1:8280121-8280140 Msa0005610:intron 45.0%
GACCTTAGTTGCCTGATATC+GGG + chr1_1:8280135-8280154 None:intergenic 45.0%
TAGAGAACAAAGGCAGCTCT+TGG - chr1_1:8280608-8280627 Msa0005610:CDS 45.0%
TGTCGAGCTCTTCTCGAAGA+AGG + chr1_1:8278911-8278930 None:intergenic 50.0%
GATAGCGCAACTCTTTGTCC+TGG + chr1_1:8279522-8279541 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG + chr1_1:8279742-8279761 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG - chr1_1:8279902-8279921 Msa0005610:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG + chr1_1:8279908-8279927 None:intergenic 50.0%
GCAACCCAGACCTTACAAGT+TGG + chr1_1:8280053-8280072 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG - chr1_1:8280130-8280149 Msa0005610:CDS 50.0%
ACGCTTCAGATGTCTAGTCC+TGG - chr1_1:8280155-8280174 Msa0005610:CDS 50.0%
CGCTTCAGATGTCTAGTCCT+GGG - chr1_1:8280156-8280175 Msa0005610:CDS 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG - chr1_1:8280164-8280183 Msa0005610:CDS 50.0%
TGATCCTTCCAAGGCTGAGT+CGG - chr1_1:8280683-8280702 Msa0005610:CDS 50.0%
TGTCGAGCTCTTCTCGAAGA+AGG + chr1_1:8278911-8278930 None:intergenic 50.0%
GATAGCGCAACTCTTTGTCC+TGG + chr1_1:8279522-8279541 None:intergenic 50.0%
!! CCGTTTTTCCTATGAGGTCC+TGG + chr1_1:8279742-8279761 None:intergenic 50.0%
GAACCTGTGTTTAGCAAGGC+AGG - chr1_1:8279902-8279921 Msa0005610:CDS 50.0%
TCTCCTGCCTTGCTAAACAC+AGG + chr1_1:8279908-8279927 None:intergenic 50.0%
GCAACCCAGACCTTACAAGT+TGG + chr1_1:8280053-8280072 None:intergenic 50.0%
GACCCGATATCAGGCAACTA+AGG - chr1_1:8280130-8280149 Msa0005610:CDS 50.0%
ACGCTTCAGATGTCTAGTCC+TGG - chr1_1:8280155-8280174 Msa0005610:CDS 50.0%
CGCTTCAGATGTCTAGTCCT+GGG - chr1_1:8280156-8280175 Msa0005610:CDS 50.0%
ATGTCTAGTCCTGGGCGTAA+GGG - chr1_1:8280164-8280183 Msa0005610:CDS 50.0%
TGATCCTTCCAAGGCTGAGT+CGG - chr1_1:8280683-8280702 Msa0005610:CDS 50.0%
GATGTCTAGTCCTGGGCGTA+AGG - chr1_1:8280163-8280182 Msa0005610:CDS 55.0%
AACAAATCGCCCTTACGCCC+AGG + chr1_1:8280176-8280195 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG - chr1_1:8280684-8280703 Msa0005610:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG + chr1_1:8280690-8280709 None:intergenic 55.0%
GATGTCTAGTCCTGGGCGTA+AGG - chr1_1:8280163-8280182 Msa0005610:CDS 55.0%
AACAAATCGCCCTTACGCCC+AGG + chr1_1:8280176-8280195 None:intergenic 55.0%
GATCCTTCCAAGGCTGAGTC+GGG - chr1_1:8280684-8280703 Msa0005610:CDS 55.0%
TAACCCGACTCAGCCTTGGA+AGG + chr1_1:8280690-8280709 None:intergenic 55.0%
TTCCACGGGATCAGGTGCGA+AGG - chr1_1:8279772-8279791 Msa0005610:intron 60.0%
TTCCTTCGCACCTGATCCCG+TGG + chr1_1:8279777-8279796 None:intergenic 60.0%
TTCCACGGGATCAGGTGCGA+AGG - chr1_1:8279772-8279791 Msa0005610:intron 60.0%
TTCCTTCGCACCTGATCCCG+TGG + chr1_1:8279777-8279796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8278750 8280710 8278750 ID=Msa0005610;Name=Msa0005610
chr1_1 mRNA 8278750 8280710 8278750 ID=Msa0005610-mRNA-1;Parent=Msa0005610;Name=Msa0005610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|5|0|379
chr1_1 exon 8280129 8280710 8280129 ID=Msa0005610-mRNA-1:exon:2914;Parent=Msa0005610-mRNA-1
chr1_1 exon 8279881 8279937 8279881 ID=Msa0005610-mRNA-1:exon:2913;Parent=Msa0005610-mRNA-1
chr1_1 exon 8279523 8279717 8279523 ID=Msa0005610-mRNA-1:exon:2912;Parent=Msa0005610-mRNA-1
chr1_1 exon 8279051 8279144 8279051 ID=Msa0005610-mRNA-1:exon:2911;Parent=Msa0005610-mRNA-1
chr1_1 exon 8278750 8278961 8278750 ID=Msa0005610-mRNA-1:exon:2910;Parent=Msa0005610-mRNA-1
chr1_1 CDS 8280129 8280710 8280129 ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1
chr1_1 CDS 8279881 8279937 8279881 ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1
chr1_1 CDS 8279523 8279717 8279523 ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1
chr1_1 CDS 8279051 8279144 8279051 ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1
chr1_1 CDS 8278750 8278961 8278750 ID=Msa0005610-mRNA-1:cds;Parent=Msa0005610-mRNA-1
Gene Sequence

>Msa0005610

ATGGATCAAGATATTTTAGAAGAAGTAACAATCTTAGAGGAACCAATTATAGCTGATTTTCAAAGAATTGTGGAGCTTACAGATTATACAGATATAGCGTCTTCTCAGTTAGCTAATCTCACGAAACATTGGGAGTATAAGCAGGCGAATGCAGTTCGCCTTCTTCGAGAAGAGCTCGACAACCTTAGCAAACAAAGGGAGGAAGTTGAGCTTAAAAAGTGTGAGATACTTAAAGACAATAATGGATTTGAGGAAGAAAGCTACGGTGGAGAAAAACATCCGGATTCAATATTGGATGGTGTTGCAATCAGGAAAAATGACGCTGTCATTCAAAACAAAAGAATTGAAATTGAGGCCGAGTATGATGATGTTGTTTACTGGAAACATCGGTCACGAGATATGGAAAAACGATTGGAGGGAAGTATTCGGAGAGAAGAAATATTAAAAGAAAAGTTGCAAGAAAGTACAGAGATTATTGAAAGACAATCATCACCTGTGGAAGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATAGGCCATCAGGACAAAGAGTTGCGCTATCGTTTTATCTATAACCATTTTCCAAGTTTAAAAGAGGAGGACCTCATAGGAAAAACGGATGTTGAAATTTCCACGGGATCAGGTGCGAAGGAATCTCAAGATTTTAAGAGAGAAGTAATGGAGAAAGGAATACCTGCAAAAAGGGAAATAACTTTTGAGACAGAACTGTTTGGATCAAAGACATTTTTGTTGTATGCAGAACCTGTGTTTAGCAAGGCAGGAGAAACAATTGGAGTGAGAAAAAGAGAAAAAATGGCAAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAACTTAATAAAACTATTTACATTACAGAGGAGACAATGAGAGCAAAACAAGTGCTGGCAACAATGTCTCATGAGATAAGATCACCACTTTCTGATGTTGTTAGCATGGCTAAAATTCTTACTACAACAAAACTTGATAGAGAACAAAGGCAGCTCTTGGATGCCATGATATCTTCAGGAGATTTGGTTCTTCAACATATTACTGATATACTTGATCCTTCCAAGGCTGAGTCGGGTTAG

Protein sequence

>Msa0005610

MDQDILEEVTILEEPIIADFQRIVELTDYTDIASSQLANLTKHWEYKQANAVRLLREELDNLSKQREEVELKKCEILKDNNGFEEESYGGEKHPDSILDGVAIRKNDAVIQNKRIEIEAEYDDVVYWKHRSRDMEKRLEGSIRREEILKEKLQESTEIIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLKEEDLIGKTDVEISTGSGAKESQDFKREVMEKGIPAKREITFETELFGSKTFLLYAEPVFSKAGETIGVRKREKMAKLREEIAVQKAKETELNKTIYITEETMRAKQVLATMSHEIRSPLSDVVSMAKILTTTKLDREQRQLLDAMISSGDLVLQHITDILDPSKAESG*