AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006650 MtrunA17_Chr1g0149451 95.577 633 27 1 8 639 9 641 0.0 1251
Msa0006650 MtrunA17_Chr3g0082141 31.229 301 175 6 52 325 141 436 7.09e-36 145
Msa0006650 MtrunA17_Chr1g0164561 33.333 219 120 4 132 325 7 224 3.20e-34 130
Msa0006650 MtrunA17_Chr5g0406251 26.689 296 193 10 35 325 275 551 2.03e-22 101
Msa0006650 MtrunA17_Chr4g0047211 29.293 198 132 3 133 329 116 306 6.41e-20 91.7
Msa0006650 MtrunA17_Chr4g0047191 29.293 198 132 3 133 329 121 311 7.08e-20 91.7
Msa0006650 MtrunA17_Chr5g0427651 25.497 302 203 8 33 327 623 909 2.50e-18 89.7
Msa0006650 MtrunA17_Chr4g0047201 28.283 198 134 3 133 329 277 467 2.93e-18 88.2
Msa0006650 MtrunA17_Chr2g0282321 29.293 198 132 3 133 329 238 428 9.17e-18 86.7
Msa0006650 MtrunA17_Chr3g0132791 26.299 308 200 10 33 329 630 921 1.43e-16 84.0
Msa0006650 MtrunA17_Chr1g0211611 24.585 301 201 11 39 333 285 565 2.34e-16 82.8
Msa0006650 MtrunA17_Chr3g0117811 21.802 344 225 9 1 319 11 335 3.16e-16 80.9
Msa0006650 MtrunA17_Chr3g0133541 26.642 274 179 8 60 324 313 573 7.71e-16 81.3
Msa0006650 MtrunA17_Chr8g0392871 25.180 278 183 9 47 319 735 992 3.65e-14 76.3
Msa0006650 MtrunA17_Chr2g0286501 35.766 137 83 4 144 277 126 260 4.04e-14 76.3
Msa0006650 MtrunA17_Chr4g0025041 28.313 166 106 5 153 316 91 245 5.13e-14 74.3
Msa0006650 MtrunA17_Chr5g0394681 26.087 184 129 3 133 315 181 358 5.34e-14 74.3
Msa0006650 MtrunA17_Chr1g0205071 23.810 189 137 3 133 320 173 355 5.65e-14 74.3
Msa0006650 MtrunA17_Chr6g0482711 31.056 161 103 4 161 319 759 913 2.53e-13 73.6
Msa0006650 MtrunA17_Chr4g0042731 24.837 306 203 11 35 328 121 411 3.10e-13 72.0
Msa0006650 MtrunA17_Chr4g0075541 25.253 198 139 4 133 329 162 351 3.44e-13 71.6
Msa0006650 MtrunA17_Chr7g0258051 23.308 266 190 7 52 316 14 266 4.07e-13 72.4
Msa0006650 MtrunA17_Chr1g0179331 28.322 286 176 11 45 322 549 813 4.38e-13 72.8
Msa0006650 MtrunA17_Chr5g0397931 28.977 176 109 5 161 326 522 691 5.73e-13 72.0
Msa0006650 MtrunA17_Chr1g0191171 25.159 314 196 11 24 319 650 942 6.05e-13 72.4
Msa0006650 MtrunA17_Chr3g0143531 22.545 275 178 5 54 318 25 274 2.28e-12 68.2
Msa0006650 MtrunA17_Chr2g0299991 26.000 200 129 7 129 316 138 330 3.26e-11 65.5
Msa0006650 MtrunA17_Chr5g0424501 27.381 168 108 5 149 315 286 440 3.64e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006650 AT4G32250.3 63.130 575 200 6 24 594 14 580 0.0 739
Msa0006650 AT4G32250.2 63.130 575 200 6 24 594 14 580 0.0 739
Msa0006650 AT4G32250.1 63.130 575 200 6 24 594 14 580 0.0 739
Msa0006650 AT5G13530.1 31.894 301 172 9 54 325 137 433 5.56e-36 145
Msa0006650 AT5G13530.2 31.894 301 172 9 54 325 137 433 6.24e-36 145
Msa0006650 AT4G24480.1 26.786 336 203 11 22 330 624 943 1.04e-18 91.3
Msa0006650 AT4G24480.2 26.888 331 204 10 22 330 624 938 4.24e-18 89.4
Msa0006650 AT4G24480.3 26.888 331 204 10 22 330 624 938 4.30e-18 89.4
Msa0006650 AT4G35780.1 24.104 307 207 11 29 328 264 551 4.31e-18 88.6
Msa0006650 AT4G38470.2 24.839 310 209 10 22 326 257 547 1.06e-17 87.4
Msa0006650 AT2G17700.1 23.795 332 222 13 6 325 230 542 1.53e-17 86.7
Msa0006650 AT4G38470.1 25.484 310 203 11 22 326 257 543 2.16e-17 86.3
Msa0006650 AT1G05100.1 32.044 181 106 7 141 315 89 258 2.78e-16 81.3
Msa0006650 AT3G63260.1 25.521 192 135 3 130 319 178 363 9.60e-16 80.1
Msa0006650 AT3G01490.1 22.772 303 212 6 33 319 87 383 2.76e-15 79.0
Msa0006650 AT4G26890.1 28.108 185 119 4 134 316 77 249 1.49e-14 77.0
Msa0006650 AT5G01850.1 27.363 201 131 5 132 325 90 282 2.03e-14 75.5
Msa0006650 AT5G01850.2 27.363 201 131 5 132 325 114 306 2.48e-14 75.5
Msa0006650 AT1G08720.1 26.761 284 182 9 47 325 665 927 2.67e-14 77.0
Msa0006650 AT3G46930.1 26.131 199 138 4 133 329 240 431 3.15e-14 75.9
Msa0006650 AT3G46930.2 26.131 199 138 4 133 329 275 466 3.41e-14 76.3
Msa0006650 AT4G38470.3 25.856 263 171 10 22 279 257 500 4.97e-14 75.5
Msa0006650 AT5G11850.1 24.818 274 184 7 52 320 607 863 7.10e-14 75.9
Msa0006650 AT1G62400.1 25.253 198 139 4 133 329 161 350 1.81e-13 73.2
Msa0006650 AT1G73660.1 24.088 274 186 7 52 320 746 1002 2.78e-13 73.9
Msa0006650 AT1G32320.1 26.493 268 163 11 60 316 54 298 6.77e-13 70.5
Msa0006650 AT5G58950.1 25.126 199 141 3 133 330 284 475 7.36e-13 72.0
Msa0006650 AT1G18160.1 24.088 274 186 7 52 320 713 969 1.41e-12 71.6
Msa0006650 AT2G42640.4 28.571 182 118 6 138 319 567 736 1.80e-12 70.9
Msa0006650 AT2G42640.1 28.571 182 118 6 138 319 605 774 2.32e-12 70.9
Msa0006650 AT3G45790.1 28.571 231 143 6 44 264 92 310 4.03e-12 68.9
Msa0006650 AT4G23050.1 25.455 275 177 8 49 315 462 716 4.59e-12 69.7
Msa0006650 AT4G23050.2 25.455 275 177 8 49 315 463 717 4.71e-12 69.7
Msa0006650 AT4G29810.3 27.363 201 125 8 129 318 147 337 1.36e-11 67.0
Msa0006650 AT3G46140.1 27.897 233 146 6 42 264 90 310 1.68e-11 67.0
Msa0006650 AT1G08720.2 25.670 261 169 8 47 302 665 905 2.66e-11 67.4
Msa0006650 AT4G29810.1 27.136 199 124 8 129 316 138 326 3.76e-11 65.9
Msa0006650 AT4G29810.2 27.136 199 124 8 129 316 147 335 4.56e-11 65.5

Find 229 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.031214 1_1:+9640033 None:intergenic
AAACTCTCCTTTCTTAAAAT+TGG 0.109577 1_1:-9643120 Msa0006650:five_prime_UTR
TGACAACGATCAAGCGATTT+TGG 0.146585 1_1:-9641055 Msa0006650:CDS
GATTCGAATGGCGTCGTAAA+AGG 0.159414 1_1:-9639652 Msa0006650:CDS
GGTTGAGTGTTAAGTTTATT+TGG 0.163491 1_1:-9642190 Msa0006650:five_prime_UTR
GAAGAACATTACATGGTTTA+AGG 0.171246 1_1:+9641082 None:intergenic
AGAGCTTCTGTTGGATTTAT+TGG 0.180068 1_1:-9639776 Msa0006650:CDS
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 1_1:+9640943 None:intergenic
CATGGAATTTCAATGTTAAA+TGG 0.209362 1_1:-9641455 Msa0006650:CDS
AAGTTGTAAATATCCTTTAA+AGG 0.215622 1_1:-9639039 Msa0006650:three_prime_UTR
TAAGTCAATGAAGATGTATT+TGG 0.232759 1_1:-9642033 Msa0006650:five_prime_UTR
GTTGAGTGTTAAGTTTATTT+GGG 0.240390 1_1:-9642189 Msa0006650:five_prime_UTR
GTTAAGCACCATCTTTAAAA+AGG 0.241242 1_1:+9639234 None:intergenic
TGAATAACATTAGTTGAAAA+TGG 0.243158 1_1:-9639107 Msa0006650:three_prime_UTR
TGTTCTGGAGCCATGTAATT+AGG 0.250797 1_1:+9640958 None:intergenic
ATACAGAGCTAATCCTTTAA+AGG 0.253814 1_1:+9639026 None:intergenic
GAGCTTCTGTTGGATTTATT+GGG 0.274049 1_1:-9639775 Msa0006650:CDS
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 1_1:+9641671 None:intergenic
GGTGTTTATTTAGGCATTAA+AGG 0.300816 1_1:-9642653 Msa0006650:five_prime_UTR
TTAGAACGTACTGCAGATTA+TGG 0.302417 1_1:-9639968 Msa0006650:CDS
TCTAGACATTCCTGAATCTA+AGG 0.302873 1_1:+9641808 None:intergenic
GGGCTTAACACATTCTCTTT+TGG 0.303938 1_1:+9639677 None:intergenic
TTTCCAGGGATGGTGAGTTT+TGG 0.309534 1_1:-9639566 Msa0006650:CDS
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 1_1:-9640693 Msa0006650:intron
GTCGATGTATGAATTCTTAT+AGG 0.311891 1_1:+9639911 None:intergenic
TGTTTGGTTGTCAAGTTTCC+AGG 0.313479 1_1:-9639581 Msa0006650:CDS
AAAGAAACAAACCTTTGTTT+TGG 0.315015 1_1:+9643055 None:intergenic
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 1_1:+9640109 None:intergenic
GTATCTGTTGACTTTCTTGT+TGG 0.318605 1_1:-9642770 Msa0006650:five_prime_UTR
TTCACATAATCCTCTTTGAT+TGG 0.323667 1_1:+9641545 None:intergenic
TCTGCGTGGGCCAGTTTGTT+AGG 0.324940 1_1:-9639700 Msa0006650:CDS
TTTACTTGATATCACTTCAT+AGG 0.337285 1_1:-9642238 Msa0006650:five_prime_UTR
CTGCTACTGGTAGGATTTCA+TGG 0.337558 1_1:-9639619 Msa0006650:CDS
AGTATTACAACCTTAGATTC+AGG 0.360396 1_1:-9641818 Msa0006650:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 1_1:-9641637 Msa0006650:CDS
CCATGGGTTATAATCCTTGT+AGG 0.362031 1_1:+9639293 None:intergenic
TTCTAGAGCTTCACGCTAAA+GGG 0.362481 1_1:-9641119 Msa0006650:CDS
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 1_1:-9641481 Msa0006650:CDS
ATCATATAGGATTTGAGTTC+AGG 0.372845 1_1:-9642625 Msa0006650:five_prime_UTR
ACATCTTAGCAGCAACTTCA+TGG 0.384443 1_1:+9641573 None:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 1_1:-9641662 Msa0006650:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 1_1:-9640901 Msa0006650:CDS
ATTCGAATGGCGTCGTAAAA+GGG 0.398237 1_1:-9639651 Msa0006650:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 1_1:-9640074 Msa0006650:CDS
TTGAAACTAGGCATATTAGT+TGG 0.401044 1_1:-9639395 Msa0006650:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 1_1:+9639912 None:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 1_1:-9641647 Msa0006650:CDS
GAACAATCGAAATGGAATCT+TGG 0.408065 1_1:+9643077 None:intergenic
TCTACCGTCATTGCGATTGA+TGG 0.408374 1_1:+9639796 None:intergenic
ATATTTACAGCTTTGAAACT+AGG 0.412019 1_1:-9639407 Msa0006650:CDS
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 1_1:+9641017 None:intergenic
AATCTGCAGTTAAGCGTGTT+TGG 0.415346 1_1:-9642475 Msa0006650:five_prime_UTR
ATGAAAGTAATTCCAAAATC+AGG 0.416519 1_1:-9640121 Msa0006650:CDS
ATGGCCTGGCAGCTGGTGAT+TGG 0.421439 1_1:-9639871 Msa0006650:CDS
TACTGGGATGGGTGACCTCC+CGG 0.424768 1_1:-9642442 Msa0006650:five_prime_UTR
TTATTGGGCTGCAAACTCTC+TGG 0.426673 1_1:-9639760 Msa0006650:CDS
AGGGGAGGGGCCTCTGCTAC+TGG 0.429138 1_1:-9639632 Msa0006650:CDS
TTGACAACCAAACACCCATT+TGG 0.430784 1_1:+9639590 None:intergenic
ATGCCTAGTACAACTAGAAC+AGG 0.431258 1_1:+9639428 None:intergenic
AATCCATGGACTTGCGCGAT+TGG 0.432685 1_1:+9641697 None:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 1_1:-9640909 Msa0006650:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 1_1:-9640148 Msa0006650:CDS
TCTGTTGACTTTCTTGTTGG+TGG 0.439907 1_1:-9642767 Msa0006650:five_prime_UTR
GTGTTTATTTAGGCATTAAA+GGG 0.442276 1_1:-9642652 Msa0006650:five_prime_UTR
TGTCCTGTTGGTGAAATATA+CGG 0.443667 1_1:-9640832 Msa0006650:CDS
GATACTACCAAATGGGTGTT+TGG 0.448805 1_1:-9639597 Msa0006650:CDS
TTCCCAAAACTCACCATCCC+TGG 0.449001 1_1:+9639563 None:intergenic
GTCATTTGAAACGGATTCAT+GGG 0.449610 1_1:-9640908 Msa0006650:CDS
ATTCTAGAGCTTCACGCTAA+AGG 0.452406 1_1:-9641120 Msa0006650:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 1_1:-9640719 Msa0006650:CDS
GTCACGAATGGCCTGGCAGC+TGG 0.457715 1_1:-9639878 Msa0006650:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 1_1:-9641473 Msa0006650:CDS
GAAAGTACAGCTGATAGAAT+TGG 0.460485 1_1:+9639145 None:intergenic
TCTCCCATTGAGAATATCCT+TGG 0.462519 1_1:-9640760 Msa0006650:CDS
TGTTTGGCCGAGAGTAGTAC+TGG 0.462669 1_1:-9642459 Msa0006650:five_prime_UTR
CAAAGGGTCCTCGACCAATT+CGG 0.467685 1_1:+9641648 None:intergenic
ATTTCATGGATACTACCAAA+TGG 0.474128 1_1:-9639605 Msa0006650:CDS
ATTAAAGGGTAGCATCATAT+AGG 0.475210 1_1:-9642638 Msa0006650:five_prime_UTR
AGTGTTAAGTTTATTTGGGG+TGG 0.477588 1_1:-9642185 Msa0006650:five_prime_UTR
GACATAGGGCCTCTGACCTC+TGG 0.481700 1_1:+9640928 None:intergenic
GGTTGTCAAGTTTCCAGGGA+TGG 0.483297 1_1:-9639576 Msa0006650:CDS
GTCTTTCGGGATTGTAAACA+TGG 0.483744 1_1:-9642335 Msa0006650:five_prime_UTR
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 1_1:+9641683 None:intergenic
TCATTAGCTAGTGTTTGAAC+TGG 0.490555 1_1:-9639172 Msa0006650:three_prime_UTR
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 1_1:+9640038 None:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 1_1:+9639989 None:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 1_1:-9640917 Msa0006650:CDS
AGTGCAACACAAGGACTTCC+CGG 0.494827 1_1:+9642423 None:intergenic
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 1_1:+9641018 None:intergenic
AAACCCTTCAGAACTCGAAA+TGG 0.495513 1_1:-9639732 Msa0006650:CDS
AAATTGTATGACGGTTCAAT+TGG 0.497991 1_1:-9641318 Msa0006650:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 1_1:-9640169 Msa0006650:CDS
GGTACGCTTGAAAGATGAAA+AGG 0.498765 1_1:-9639849 Msa0006650:CDS
AGACCTGTTCTAGTTGTACT+AGG 0.500576 1_1:-9639431 Msa0006650:CDS
TAACCCATGGCAACACAACA+TGG 0.500752 1_1:-9639280 Msa0006650:CDS
GGCCGAGAGTAGTACTGGGA+TGG 0.501549 1_1:-9642454 Msa0006650:five_prime_UTR
CGACCAATCGCGCAAGTCCA+TGG 0.502376 1_1:-9641700 Msa0006650:CDS
GATCCGTATATTTCACCAAC+AGG 0.502608 1_1:+9640829 None:intergenic
GAGGGGCCTCTGCTACTGGT+AGG 0.503223 1_1:-9639628 Msa0006650:CDS
TGGCCTGGCAGCTGGTGATT+GGG 0.503490 1_1:-9639870 Msa0006650:CDS
ACGTTATTAACATTGAGCTT+AGG 0.503963 1_1:+9641888 None:intergenic
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 1_1:+9640775 None:intergenic
AACTTCAACCTCGGAAGGAT+CGG 0.506263 1_1:+9639523 None:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 1_1:+9640756 None:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 1_1:+9640706 None:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 1_1:-9641451 Msa0006650:CDS
TTTCTTGTTGGTGGTTGATG+AGG 0.512270 1_1:-9642758 Msa0006650:five_prime_UTR
CTCAAAGGATCAACTTCAGG+TGG 0.513886 1_1:-9640071 Msa0006650:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 1_1:-9639951 Msa0006650:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 1_1:-9640985 Msa0006650:CDS
GTTTGGTTGTCAAGTTTCCA+GGG 0.514420 1_1:-9639580 Msa0006650:CDS
TTGATGAGGGAACAAGTGAT+TGG 0.514638 1_1:-9642744 Msa0006650:five_prime_UTR
CAGAAAATTTCAAAGATCAC+AGG 0.514716 1_1:+9641853 None:intergenic
ATTGTAAACATGGGTATCAA+TGG 0.516132 1_1:-9642325 Msa0006650:five_prime_UTR
ACACATCACCTCAAAACATC+AGG 0.516904 1_1:+9641255 None:intergenic
CATGGACTTGCGCGATTGGT+CGG 0.519277 1_1:+9641701 None:intergenic
ACTGGGATGGGTGACCTCCC+GGG 0.523075 1_1:-9642441 Msa0006650:five_prime_UTR
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 1_1:+9641094 None:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 1_1:-9641450 Msa0006650:intron
TTGCAGGTCACTGAATGAAC+TGG 0.528545 1_1:-9640179 Msa0006650:intron
CGCTTAACTGCAGATTCTGA+TGG 0.530436 1_1:+9642482 None:intergenic
TTTCGATTGTTCCAAAACAA+AGG 0.530834 1_1:-9643066 Msa0006650:five_prime_UTR
TCTGCCATTTCGAGTTCTGA+AGG 0.531466 1_1:+9639728 None:intergenic
GTACCCAATCACCAGCTGCC+AGG 0.532200 1_1:+9639867 None:intergenic
TTTCATGGATACTACCAAAT+GGG 0.532985 1_1:-9639604 Msa0006650:CDS
AGCAAACACTAGAAACTCCT+TGG 0.533146 1_1:+9641483 None:intergenic
TGAACGCGTCACGAATGGCC+TGG 0.537908 1_1:-9639885 Msa0006650:CDS
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 1_1:-9640086 Msa0006650:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 1_1:-9640844 Msa0006650:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 1_1:-9639952 Msa0006650:CDS
TGGCAGGTATGGGATCGATC+TGG 0.548820 1_1:-9641151 Msa0006650:intron
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 1_1:+9641665 None:intergenic
TTCTTGTTGGTGGTTGATGA+GGG 0.549496 1_1:-9642757 Msa0006650:five_prime_UTR
TACGACGCCATTCGAATCGA+GGG 0.550381 1_1:+9639657 None:intergenic
GAATCCGTTTCAAATGACAT+AGG 0.550959 1_1:+9640913 None:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 1_1:+9641075 None:intergenic
GCACCAAGGATATTCTCAAT+GGG 0.552742 1_1:+9640757 None:intergenic
TCTTGGAGAAACAAAGAACT+AGG 0.554643 1_1:+9643094 None:intergenic
TTCGAATGGCGTCGTAAAAG+GGG 0.556323 1_1:-9639650 Msa0006650:CDS
TAGTTGGAAACAAAGTGAAA+AGG 0.558036 1_1:-9639379 Msa0006650:CDS
AACATGTTGAGGATCATCAC+TGG 0.559885 1_1:-9639460 Msa0006650:CDS
AAAATCAACAACTTCAACCT+CGG 0.561609 1_1:+9639514 None:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 1_1:-9640856 Msa0006650:CDS
AAAAGGATATTAGCAACTGA+AGG 0.563136 1_1:+9639251 None:intergenic
TTGAGTGTTAAGTTTATTTG+GGG 0.563417 1_1:-9642188 Msa0006650:five_prime_UTR
AACCCATGGCAACACAACAT+GGG 0.563805 1_1:-9639279 Msa0006650:CDS
CTGCCATTTCGAGTTCTGAA+GGG 0.564065 1_1:+9639729 None:intergenic
AGCCAACGACAGTTCCGTCT+GGG 0.566135 1_1:+9639990 None:intergenic
GGGCTGCAAACTCTCTGGAA+TGG 0.566139 1_1:-9639755 Msa0006650:CDS
ACTCTTGAACGCGTCACGAA+TGG 0.567776 1_1:-9639890 Msa0006650:CDS
AGGAATGTCTAGAGAAGTCA+TGG 0.568023 1_1:-9641798 Msa0006650:CDS
GTATTTACATATTTATTCCG+AGG 0.570546 1_1:-9642120 Msa0006650:five_prime_UTR
TGAGCTTTGCATGAGTTGGG+AGG 0.571011 1_1:+9640025 None:intergenic
TGGCTAATGATGGAGGAGGA+TGG 0.574319 1_1:-9640159 Msa0006650:CDS
GTGCAACACAAGGACTTCCC+GGG 0.574595 1_1:+9642424 None:intergenic
ACCCATGGCAACACAACATG+GGG 0.575393 1_1:-9639278 Msa0006650:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 1_1:-9640954 Msa0006650:CDS
GCCGAGAGTAGTACTGGGAT+GGG 0.576425 1_1:-9642453 Msa0006650:five_prime_UTR
TCAACTTCAGGTGGGTGACA+TGG 0.577067 1_1:-9640062 Msa0006650:CDS
AGAAAAGTATCAACATGTTG+AGG 0.578832 1_1:-9639471 Msa0006650:CDS
GTATTTGTTACTTCTTAGAG+TGG 0.581235 1_1:-9642567 Msa0006650:five_prime_UTR
TGCAAGCCAAACATCACCAA+AGG 0.581260 1_1:+9641631 None:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 1_1:+9640763 None:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 1_1:-9639944 Msa0006650:CDS
TGGGAATGAATCAAACACCT+TGG 0.582420 1_1:-9639546 Msa0006650:CDS
TCAACAACTTCAACCTCGGA+AGG 0.582617 1_1:+9639518 None:intergenic
CATTCCATCAATCGCAATGA+CGG 0.585990 1_1:-9639800 Msa0006650:CDS
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 1_1:+9640776 None:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 1_1:-9641307 Msa0006650:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 1_1:+9640914 None:intergenic
TTGTTGTTGCTCAGACAACA+AGG 0.587800 1_1:-9642009 Msa0006650:five_prime_UTR
AAGGAAAAGCACTCACCGGT+GGG 0.588053 1_1:-9639830 Msa0006650:CDS
AAAACACAAACAGTCCTACA+AGG 0.589182 1_1:-9639307 Msa0006650:CDS
ACAAAGTGAAAAGGTGCAAG+AGG 0.591652 1_1:-9639370 Msa0006650:CDS
CACCTTGGCCGATCCTTCCG+AGG 0.592446 1_1:-9639531 Msa0006650:CDS
AACCTCGGAAGGATCGGCCA+AGG 0.594129 1_1:+9639529 None:intergenic
TGGCTAGACTAAGAGATGGA+TGG 0.594983 1_1:-9641287 Msa0006650:CDS
GATGTTACATCCAATCAAAG+AGG 0.595757 1_1:-9641555 Msa0006650:CDS
TTACGACGCCATTCGAATCG+AGG 0.595769 1_1:+9639656 None:intergenic
GCAAGCCAAACATCACCAAA+GGG 0.597883 1_1:+9641632 None:intergenic
TATGGGATCGATCTGGCTCA+AGG 0.601763 1_1:-9641144 Msa0006650:CDS
GAATTATGCTTGAAGTGCCA+AGG 0.602260 1_1:-9641500 Msa0006650:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 1_1:-9641656 Msa0006650:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 1_1:-9640968 Msa0006650:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 1_1:-9641327 Msa0006650:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 1_1:-9640861 Msa0006650:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 1_1:-9640874 Msa0006650:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 1_1:+9640074 None:intergenic
AATGGCGTCGTAAAAGGGGA+GGG 0.612881 1_1:-9639646 Msa0006650:CDS
GTCCCAGACGGAACTGTCGT+TGG 0.613432 1_1:-9639992 Msa0006650:CDS
TGTTAAGCCCTCGATTCGAA+TGG 0.618387 1_1:-9639664 Msa0006650:CDS
ACCCATCCCAGTACTACTCT+CGG 0.619927 1_1:+9642452 None:intergenic
TCATTTGAAACGGATTCATG+GGG 0.622874 1_1:-9640907 Msa0006650:CDS
TGAAAAGGAAAAGCACTCAC+CGG 0.625000 1_1:-9639834 Msa0006650:CDS
ATGGCAGAATCATTCTGCGT+GGG 0.627438 1_1:-9639713 Msa0006650:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 1_1:-9641291 Msa0006650:CDS
TGAAATCCTACCAGTAGCAG+AGG 0.629390 1_1:+9639622 None:intergenic
AAAGGAAAAGCACTCACCGG+TGG 0.630780 1_1:-9639831 Msa0006650:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 1_1:+9640084 None:intergenic
ATGGCGTCGTAAAAGGGGAG+GGG 0.637421 1_1:-9639645 Msa0006650:CDS
GAATGGCGTCGTAAAAGGGG+AGG 0.641779 1_1:-9639647 Msa0006650:CDS
TATTCTCAATGGGAGAAGGA+AGG 0.642358 1_1:+9640767 None:intergenic
AATGACGGTAGAGCTTCTGT+TGG 0.643785 1_1:-9639785 Msa0006650:CDS
CAATGGAAACCAGAGGTCAG+AGG 0.644185 1_1:-9640937 Msa0006650:CDS
ACATGTTGAGGATCATCACT+GGG 0.644328 1_1:-9639459 Msa0006650:CDS
GAGGGATGAAGTGCAACACA+AGG 0.648511 1_1:+9642414 None:intergenic
TCAAAGGATCAACTTCAGGT+GGG 0.652726 1_1:-9640070 Msa0006650:CDS
ATGGAATGTAGAATCCCCAC+CGG 0.657028 1_1:+9639815 None:intergenic
GTTTGGCCGAGAGTAGTACT+GGG 0.657129 1_1:-9642458 Msa0006650:five_prime_UTR
GAAAAGCTGCATATCCCAAG+TGG 0.662621 1_1:-9640790 Msa0006650:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 1_1:+9640873 None:intergenic
CCTACAAGGATTATAACCCA+TGG 0.667895 1_1:-9639293 Msa0006650:CDS
AATGGCAGAATCATTCTGCG+TGG 0.675086 1_1:-9639714 Msa0006650:CDS
TCTTTCGGGATTGTAAACAT+GGG 0.678318 1_1:-9642334 Msa0006650:five_prime_UTR
AATGAACTGGCTAATGATGG+AGG 0.681313 1_1:-9640166 Msa0006650:CDS
CAAAACATGAATGTCCCAGA+CGG 0.685960 1_1:-9640004 Msa0006650:CDS
CCATGGCAACACAACATGGG+GGG 0.686405 1_1:-9639276 Msa0006650:CDS
GTAAACATGGGTATCAATGG+CGG 0.686930 1_1:-9642322 Msa0006650:five_prime_UTR
TTAGCTCAGATATTGCTCAG+AGG 0.694542 1_1:-9640990 Msa0006650:CDS
AGGAAAAGCACTCACCGGTG+GGG 0.698636 1_1:-9639829 Msa0006650:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 1_1:-9640163 Msa0006650:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 1_1:-9640944 Msa0006650:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 1_1:+9640743 None:intergenic
CCCATGGCAACACAACATGG+GGG 0.707761 1_1:-9639277 Msa0006650:CDS
TTATAGGGTCATGAATACCG+TGG 0.720576 1_1:+9639927 None:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 1_1:+9640844 None:intergenic
GATAGTGTAGAAACATCACA+TGG 0.731382 1_1:+9642382 None:intergenic
CAACACAAGGACTTCCCGGG+AGG 0.733345 1_1:+9642427 None:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 1_1:-9640099 Msa0006650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTCTTTTTTTGA+GGG - chr1_1:9639417-9639436 Msa0006650:CDS 10.0%
!! AAAAATACATAATAAAGAAA+AGG + chr1_1:9640134-9640153 None:intergenic 10.0%
!! TTCAAAATAATGAAAAACAT+TGG + chr1_1:9639170-9639189 None:intergenic 15.0%
!!! CTTAAAAAATTCTTTTTTTG+AGG - chr1_1:9639416-9639435 Msa0006650:CDS 15.0%
!!! TAAAAAATTCTTTTTTTGAG+GGG - chr1_1:9639418-9639437 Msa0006650:CDS 15.0%
!!! ACTATCTTTTTATTTAAAGA+AGG - chr1_1:9639727-9639746 Msa0006650:CDS 15.0%
!!! CTATCTTTTTATTTAAAGAA+GGG - chr1_1:9639728-9639747 Msa0006650:CDS 15.0%
!!! TATCTTTTTATTTAAAGAAG+GGG - chr1_1:9639729-9639748 Msa0006650:CDS 15.0%
!! AAAAAATAAAATGCAAACAA+AGG + chr1_1:9639797-9639816 None:intergenic 15.0%
!!! TTCTTTATTATGTATTTTTG+TGG - chr1_1:9640135-9640154 Msa0006650:CDS 15.0%
!! TCTTTGTTAAAAATGAATGA+TGG - chr1_1:9639379-9639398 Msa0006650:CDS 20.0%
!! CTTTGTTAAAAATGAATGAT+GGG - chr1_1:9639380-9639399 Msa0006650:CDS 20.0%
!!! ATCTTTTTATTTAAAGAAGG+GGG - chr1_1:9639730-9639749 Msa0006650:CDS 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG - chr1_1:9640333-9640352 Msa0006650:intron 20.0%
!! AATTTCAATGTTAAATGGAA+GGG - chr1_1:9640642-9640661 Msa0006650:intron 20.0%
!! ATCATTATGAAATTGTATGA+CGG - chr1_1:9640765-9640784 Msa0006650:CDS 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG - chr1_1:9640878-9640897 Msa0006650:CDS 20.0%
!!! TCTTTAACTTATATAGCATA+GGG - chr1_1:9640879-9640898 Msa0006650:CDS 20.0%
!! ATGCAAAATTAAACAAGAAT+CGG + chr1_1:9641471-9641490 None:intergenic 20.0%
!! TGAATAACATTAGTTGAAAA+TGG - chr1_1:9642985-9643004 Msa0006650:five_prime_UTR 20.0%
!! AAGTTGTAAATATCCTTTAA+AGG - chr1_1:9643053-9643072 Msa0006650:five_prime_UTR 20.0%
! AAACTCTCCTTTCTTAAAAT+TGG - chr1_1:9638972-9638991 Msa0006650:three_prime_UTR 25.0%
!!! TAGGAATCCAATTTTAAGAA+AGG + chr1_1:9638982-9639001 None:intergenic 25.0%
!!! AAAGAAACAAACCTTTGTTT+TGG + chr1_1:9639040-9639059 None:intergenic 25.0%
!!! ATTTTTTAAGCAATTGAGAG+AGG + chr1_1:9639406-9639425 None:intergenic 25.0%
! GTGTTTATTTAGGCATTAAA+GGG - chr1_1:9639440-9639459 Msa0006650:CDS 25.0%
! TTTACTTGATATCACTTCAT+AGG - chr1_1:9639854-9639873 Msa0006650:CDS 25.0%
!!! GCTATTGTAGTTTTGATATA+TGG - chr1_1:9639881-9639900 Msa0006650:CDS 25.0%
! GTTGAGTGTTAAGTTTATTT+GGG - chr1_1:9639903-9639922 Msa0006650:CDS 25.0%
! TTGAGTGTTAAGTTTATTTG+GGG - chr1_1:9639904-9639923 Msa0006650:CDS 25.0%
! GTATTTACATATTTATTCCG+AGG - chr1_1:9639972-9639991 Msa0006650:CDS 25.0%
!! ATATAACATTTTTCTTGCCT+CGG + chr1_1:9639992-9640011 None:intergenic 25.0%
! TAAGTCAATGAAGATGTATT+TGG - chr1_1:9640059-9640078 Msa0006650:CDS 25.0%
! CATGGAATTTCAATGTTAAA+TGG - chr1_1:9640637-9640656 Msa0006650:intron 25.0%
! GAATTTCAATGTTAAATGGA+AGG - chr1_1:9640641-9640660 Msa0006650:intron 25.0%
! GTGCATTTATTTCAATGTAT+AGG - chr1_1:9640678-9640697 Msa0006650:intron 25.0%
! AAAATTACTGGTCAATACTA+AGG - chr1_1:9640902-9640921 Msa0006650:CDS 25.0%
! TTTCAATTATCACTTCACAT+TGG - chr1_1:9641502-9641521 Msa0006650:CDS 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG + chr1_1:9641776-9641795 None:intergenic 25.0%
! ATGAAAGTAATTCCAAAATC+AGG - chr1_1:9641971-9641990 Msa0006650:five_prime_UTR 25.0%
! TCGATGTATGAATTCTTATA+GGG + chr1_1:9642183-9642202 None:intergenic 25.0%
!!! ATATTTACAGCTTTGAAACT+AGG - chr1_1:9642685-9642704 Msa0006650:five_prime_UTR 25.0%
!!! GCTAATATCCTTTTTAAAGA+TGG - chr1_1:9642850-9642869 Msa0006650:five_prime_UTR 25.0%
!!! TTGTTTTGGAACAATCGAAA+TGG + chr1_1:9639026-9639045 None:intergenic 30.0%
TTTCGATTGTTCCAAAACAA+AGG - chr1_1:9639026-9639045 Msa0006650:three_prime_UTR 30.0%
!!! TTTTTGAGGGGTGTTTATTT+AGG - chr1_1:9639430-9639449 Msa0006650:CDS 30.0%
GGTGTTTATTTAGGCATTAA+AGG - chr1_1:9639439-9639458 Msa0006650:CDS 30.0%
ATTAAAGGGTAGCATCATAT+AGG - chr1_1:9639454-9639473 Msa0006650:CDS 30.0%
! ATCATATAGGATTTGAGTTC+AGG - chr1_1:9639467-9639486 Msa0006650:CDS 30.0%
! GTATTTGTTACTTCTTAGAG+TGG - chr1_1:9639525-9639544 Msa0006650:CDS 30.0%
AAACATCACATGGCAAAAAA+TGG + chr1_1:9639703-9639722 None:intergenic 30.0%
ATTGTAAACATGGGTATCAA+TGG - chr1_1:9639767-9639786 Msa0006650:CDS 30.0%
GGTTGAGTGTTAAGTTTATT+TGG - chr1_1:9639902-9639921 Msa0006650:CDS 30.0%
ACGTTATTAACATTGAGCTT+AGG + chr1_1:9640207-9640226 None:intergenic 30.0%
CAGAAAATTTCAAAGATCAC+AGG + chr1_1:9640242-9640261 None:intergenic 30.0%
AGTATTACAACCTTAGATTC+AGG - chr1_1:9640274-9640293 Msa0006650:intron 30.0%
TTCACATAATCCTCTTTGAT+TGG + chr1_1:9640550-9640569 None:intergenic 30.0%
TTAAATGGAAGGGTTAGATT+TGG - chr1_1:9640652-9640671 Msa0006650:intron 30.0%
TAGCTTGATAGAAGTCAAAA+GGG + chr1_1:9640717-9640736 None:intergenic 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG + chr1_1:9640718-9640737 None:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG - chr1_1:9640774-9640793 Msa0006650:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG - chr1_1:9640890-9640909 Msa0006650:CDS 30.0%
GAAGAACATTACATGGTTTA+AGG + chr1_1:9641013-9641032 None:intergenic 30.0%
TCATTGAGAAGAACATTACA+TGG + chr1_1:9641020-9641039 None:intergenic 30.0%
AATCCGTTTCAAATGACATA+GGG + chr1_1:9641181-9641200 None:intergenic 30.0%
!! CATGTTTTGAGTATGATTTG+AGG - chr1_1:9641357-9641376 Msa0006650:intron 30.0%
TCGGCATCAGAAAAAAAAAA+TGG + chr1_1:9641452-9641471 None:intergenic 30.0%
TTATGATCATGACCGATTAT+TGG - chr1_1:9641586-9641605 Msa0006650:CDS 30.0%
ATTCCTGTGATGTATTATCT+TGG - chr1_1:9641704-9641723 Msa0006650:CDS 30.0%
TTCCTGTGATGTATTATCTT+GGG - chr1_1:9641705-9641724 Msa0006650:CDS 30.0%
! ATTATGGATTTGTTCTAGTG+AGG - chr1_1:9642140-9642159 Msa0006650:five_prime_UTR 30.0%
! TTATGGATTTGTTCTAGTGA+GGG - chr1_1:9642141-9642160 Msa0006650:five_prime_UTR 30.0%
GTCGATGTATGAATTCTTAT+AGG + chr1_1:9642184-9642203 None:intergenic 30.0%
ATTTCATGGATACTACCAAA+TGG - chr1_1:9642487-9642506 Msa0006650:five_prime_UTR 30.0%
TTTCATGGATACTACCAAAT+GGG - chr1_1:9642488-9642507 Msa0006650:five_prime_UTR 30.0%
AAAATCAACAACTTCAACCT+CGG + chr1_1:9642581-9642600 None:intergenic 30.0%
!! TTGATTTTAACACTTGTCCT+GGG - chr1_1:9642593-9642612 Msa0006650:five_prime_UTR 30.0%
!! AGAAAAGTATCAACATGTTG+AGG - chr1_1:9642621-9642640 Msa0006650:five_prime_UTR 30.0%
TTGAAACTAGGCATATTAGT+TGG - chr1_1:9642697-9642716 Msa0006650:five_prime_UTR 30.0%
TAGTTGGAAACAAAGTGAAA+AGG - chr1_1:9642713-9642732 Msa0006650:five_prime_UTR 30.0%
AAAAGGATATTAGCAACTGA+AGG + chr1_1:9642844-9642863 None:intergenic 30.0%
! GTTAAGCACCATCTTTAAAA+AGG + chr1_1:9642861-9642880 None:intergenic 30.0%
ATACAGAGCTAATCCTTTAA+AGG + chr1_1:9643069-9643088 None:intergenic 30.0%
TCTTGGAGAAACAAAGAACT+AGG + chr1_1:9639001-9639020 None:intergenic 35.0%
GAACAATCGAAATGGAATCT+TGG + chr1_1:9639018-9639037 None:intergenic 35.0%
!! GTATCTGTTGACTTTCTTGT+TGG - chr1_1:9639322-9639341 Msa0006650:CDS 35.0%
ATCACATGGCAAAAAATGGA+GGG + chr1_1:9639699-9639718 None:intergenic 35.0%
GATAGTGTAGAAACATCACA+TGG + chr1_1:9639713-9639732 None:intergenic 35.0%
TCTTTCGGGATTGTAAACAT+GGG - chr1_1:9639758-9639777 Msa0006650:CDS 35.0%
AGTGTTAAGTTTATTTGGGG+TGG - chr1_1:9639907-9639926 Msa0006650:CDS 35.0%
TCTAGACATTCCTGAATCTA+AGG + chr1_1:9640287-9640306 None:intergenic 35.0%
GATGTTACATCCAATCAAAG+AGG - chr1_1:9640537-9640556 Msa0006650:intron 35.0%
! TCTCATTACCTGATGTTTTG+AGG - chr1_1:9640829-9640848 Msa0006650:CDS 35.0%
! AAGGATGTGTTGGTCATTAA+TGG - chr1_1:9640921-9640940 Msa0006650:CDS 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG + chr1_1:9641001-9641020 None:intergenic 35.0%
GAATCCGTTTCAAATGACAT+AGG + chr1_1:9641182-9641201 None:intergenic 35.0%
! TGTCATTTGAAACGGATTCA+TGG - chr1_1:9641183-9641202 Msa0006650:intron 35.0%
! GTCATTTGAAACGGATTCAT+GGG - chr1_1:9641184-9641203 Msa0006650:intron 35.0%
! TCATTTGAAACGGATTCATG+GGG - chr1_1:9641185-9641204 Msa0006650:intron 35.0%
ACCAGTCAACATTTCAACAA+CGG + chr1_1:9641222-9641241 None:intergenic 35.0%
! TGTCCTGTTGGTGAAATATA+CGG - chr1_1:9641260-9641279 Msa0006650:intron 35.0%
ATATTCTGCGCGTCTTTAAA+AGG - chr1_1:9641399-9641418 Msa0006650:intron 35.0%
TCCTGTGAATATTCCAAGAT+TGG - chr1_1:9641623-9641642 Msa0006650:CDS 35.0%
CCTGTGAATATTCCAAGATT+GGG - chr1_1:9641624-9641643 Msa0006650:CDS 35.0%
TGAATATTCCAAGATTGGGT+AGG - chr1_1:9641628-9641647 Msa0006650:CDS 35.0%
AGGAATACAGCTAATCTAGA+AGG + chr1_1:9641690-9641709 None:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG + chr1_1:9641710-9641729 None:intergenic 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG - chr1_1:9641722-9641741 Msa0006650:CDS 35.0%
! TTTTGAGCTTTGCATGAGTT+GGG + chr1_1:9642073-9642092 None:intergenic 35.0%
TTAGAACGTACTGCAGATTA+TGG - chr1_1:9642124-9642143 Msa0006650:five_prime_UTR 35.0%
AGAGCTTCTGTTGGATTTAT+TGG - chr1_1:9642316-9642335 Msa0006650:five_prime_UTR 35.0%
GAGCTTCTGTTGGATTTATT+GGG - chr1_1:9642317-9642336 Msa0006650:five_prime_UTR 35.0%
!! GTTGATTTTAACACTTGTCC+TGG - chr1_1:9642592-9642611 Msa0006650:five_prime_UTR 35.0%
AGCAAAAACCAACATGTTGA+AGG - chr1_1:9642760-9642779 Msa0006650:five_prime_UTR 35.0%
!!! TGTTTTGACCTTCAACATGT+TGG + chr1_1:9642771-9642790 None:intergenic 35.0%
AAAACACAAACAGTCCTACA+AGG - chr1_1:9642785-9642804 Msa0006650:five_prime_UTR 35.0%
TCATTAGCTAGTGTTTGAAC+TGG - chr1_1:9642920-9642939 Msa0006650:five_prime_UTR 35.0%
! GAAAGTACAGCTGATAGAAT+TGG + chr1_1:9642950-9642969 None:intergenic 35.0%
!! TCTGTTGACTTTCTTGTTGG+TGG - chr1_1:9639325-9639344 Msa0006650:CDS 40.0%
!! TTTCTTGTTGGTGGTTGATG+AGG - chr1_1:9639334-9639353 Msa0006650:CDS 40.0%
!! TTCTTGTTGGTGGTTGATGA+GGG - chr1_1:9639335-9639354 Msa0006650:CDS 40.0%
TTGATGAGGGAACAAGTGAT+TGG - chr1_1:9639348-9639367 Msa0006650:CDS 40.0%
AATCTGCAGTTAAGCGTGTT+TGG - chr1_1:9639617-9639636 Msa0006650:CDS 40.0%
CATCACATGGCAAAAAATGG+AGG + chr1_1:9639700-9639719 None:intergenic 40.0%
AAGAAGGGGGAAATGTCTTT+CGG - chr1_1:9639743-9639762 Msa0006650:CDS 40.0%
GTCTTTCGGGATTGTAAACA+TGG - chr1_1:9639757-9639776 Msa0006650:CDS 40.0%
GTAAACATGGGTATCAATGG+CGG - chr1_1:9639770-9639789 Msa0006650:CDS 40.0%
! TTGTTGTTGCTCAGACAACA+AGG - chr1_1:9640083-9640102 Msa0006650:CDS 40.0%
AGGAATGTCTAGAGAAGTCA+TGG - chr1_1:9640294-9640313 Msa0006650:intron 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG + chr1_1:9640412-9640431 None:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG + chr1_1:9640424-9640443 None:intergenic 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG + chr1_1:9640430-9640449 None:intergenic 40.0%
! TTGAAACTTCAGCACCGAAT+TGG - chr1_1:9640430-9640449 Msa0006650:intron 40.0%
ACATCTTAGCAGCAACTTCA+TGG + chr1_1:9640522-9640541 None:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG - chr1_1:9640592-9640611 Msa0006650:intron 40.0%
AGCAAACACTAGAAACTCCT+TGG + chr1_1:9640612-9640631 None:intergenic 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG - chr1_1:9640611-9640630 Msa0006650:intron 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG - chr1_1:9640619-9640638 Msa0006650:intron 40.0%
AAGTTGGCTAGACTAAGAGA+TGG - chr1_1:9640801-9640820 Msa0006650:CDS 40.0%
ACACATCACCTCAAAACATC+AGG + chr1_1:9640840-9640859 None:intergenic 40.0%
GGTCAATACTAAGGATGTGT+TGG - chr1_1:9640911-9640930 Msa0006650:CDS 40.0%
! ATGTGTTGGTCATTAATGGC+AGG - chr1_1:9640925-9640944 Msa0006650:CDS 40.0%
TTGGTCATTAATGGCAGGTA+TGG - chr1_1:9640930-9640949 Msa0006650:CDS 40.0%
TGGTCATTAATGGCAGGTAT+GGG - chr1_1:9640931-9640950 Msa0006650:CDS 40.0%
!! ATTCTAGAGCTTCACGCTAA+AGG - chr1_1:9640972-9640991 Msa0006650:CDS 40.0%
!! TTCTAGAGCTTCACGCTAAA+GGG - chr1_1:9640973-9640992 Msa0006650:CDS 40.0%
! TGACAACGATCAAGCGATTT+TGG - chr1_1:9641037-9641056 Msa0006650:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG - chr1_1:9641038-9641057 Msa0006650:CDS 40.0%
! GGTATTCCCAATCTTTTGCT+TGG - chr1_1:9641068-9641087 Msa0006650:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG + chr1_1:9641077-9641096 None:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG + chr1_1:9641078-9641097 None:intergenic 40.0%
TTAGCTCAGATATTGCTCAG+AGG - chr1_1:9641102-9641121 Msa0006650:CDS 40.0%
GCTTGGAAGTCCTAATTACA+TGG - chr1_1:9641124-9641143 Msa0006650:CDS 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG + chr1_1:9641137-9641156 None:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG - chr1_1:9641138-9641157 Msa0006650:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG - chr1_1:9641175-9641194 Msa0006650:intron 40.0%
ACCGTTGTTGAAATGTTGAC+TGG - chr1_1:9641218-9641237 Msa0006650:intron 40.0%
GATCCGTATATTTCACCAAC+AGG + chr1_1:9641266-9641285 None:intergenic 40.0%
TATTCTCAATGGGAGAAGGA+AGG + chr1_1:9641328-9641347 None:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG + chr1_1:9641332-9641351 None:intergenic 40.0%
TCTCCCATTGAGAATATCCT+TGG - chr1_1:9641332-9641351 Msa0006650:CDS 40.0%
GCACCAAGGATATTCTCAAT+GGG + chr1_1:9641338-9641357 None:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG + chr1_1:9641339-9641358 None:intergenic 40.0%
CATACTCAAAACATGCACCA+AGG + chr1_1:9641352-9641371 None:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG - chr1_1:9641373-9641392 Msa0006650:intron 40.0%
CGCAGAATATCTACCATTGA+AGG + chr1_1:9641389-9641408 None:intergenic 40.0%
GGTACAGGTTCACCAATAAT+CGG + chr1_1:9641601-9641620 None:intergenic 40.0%
AATATTCACAGGACAGGTAC+AGG + chr1_1:9641616-9641635 None:intergenic 40.0%
TCTTGGAATATTCACAGGAC+AGG + chr1_1:9641622-9641641 None:intergenic 40.0%
CCCAATCTTGGAATATTCAC+AGG + chr1_1:9641627-9641646 None:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG + chr1_1:9641759-9641778 None:intergenic 40.0%
ATTCATTCTGCCTATGTTGC+AGG - chr1_1:9641897-9641916 Msa0006650:five_prime_UTR 40.0%
CTGAATGAACTGGCTAATGA+TGG - chr1_1:9641923-9641942 Msa0006650:five_prime_UTR 40.0%
AATGAACTGGCTAATGATGG+AGG - chr1_1:9641926-9641945 Msa0006650:five_prime_UTR 40.0%
TCAAAGGATCAACTTCAGGT+GGG - chr1_1:9642022-9642041 Msa0006650:five_prime_UTR 40.0%
!! GTTTTGAGCTTTGCATGAGT+TGG + chr1_1:9642074-9642093 None:intergenic 40.0%
CAAAACATGAATGTCCCAGA+CGG - chr1_1:9642088-9642107 Msa0006650:five_prime_UTR 40.0%
TTATAGGGTCATGAATACCG+TGG + chr1_1:9642168-9642187 None:intergenic 40.0%
GGTACGCTTGAAAGATGAAA+AGG - chr1_1:9642243-9642262 Msa0006650:five_prime_UTR 40.0%
!! TGAAAAGGAAAAGCACTCAC+CGG - chr1_1:9642258-9642277 Msa0006650:five_prime_UTR 40.0%
CATTCCATCAATCGCAATGA+CGG - chr1_1:9642292-9642311 Msa0006650:five_prime_UTR 40.0%
AAACCCTTCAGAACTCGAAA+TGG - chr1_1:9642360-9642379 Msa0006650:five_prime_UTR 40.0%
! TCTCTTTTGGCCTAACAAAC+TGG + chr1_1:9642405-9642424 None:intergenic 40.0%
! GGGCTTAACACATTCTCTTT+TGG + chr1_1:9642418-9642437 None:intergenic 40.0%
ATTCGAATGGCGTCGTAAAA+GGG - chr1_1:9642441-9642460 Msa0006650:five_prime_UTR 40.0%
GATACTACCAAATGGGTGTT+TGG - chr1_1:9642495-9642514 Msa0006650:five_prime_UTR 40.0%
TTGACAACCAAACACCCATT+TGG + chr1_1:9642505-9642524 None:intergenic 40.0%
TGTTTGGTTGTCAAGTTTCC+AGG - chr1_1:9642511-9642530 Msa0006650:five_prime_UTR 40.0%
GTTTGGTTGTCAAGTTTCCA+GGG - chr1_1:9642512-9642531 Msa0006650:five_prime_UTR 40.0%
TGGGAATGAATCAAACACCT+TGG - chr1_1:9642546-9642565 Msa0006650:five_prime_UTR 40.0%
! TTTTAACACTTGTCCTGGGA+TGG - chr1_1:9642597-9642616 Msa0006650:five_prime_UTR 40.0%
! TGATACTTTTCTACCATCCC+AGG + chr1_1:9642613-9642632 None:intergenic 40.0%
AACATGTTGAGGATCATCAC+TGG - chr1_1:9642632-9642651 Msa0006650:five_prime_UTR 40.0%
ACATGTTGAGGATCATCACT+GGG - chr1_1:9642633-9642652 Msa0006650:five_prime_UTR 40.0%
! AGACCTGTTCTAGTTGTACT+AGG - chr1_1:9642661-9642680 Msa0006650:five_prime_UTR 40.0%
ATGCCTAGTACAACTAGAAC+AGG + chr1_1:9642667-9642686 None:intergenic 40.0%
! ACAAAGTGAAAAGGTGCAAG+AGG - chr1_1:9642722-9642741 Msa0006650:five_prime_UTR 40.0%
! CCATGGGTTATAATCCTTGT+AGG + chr1_1:9642802-9642821 None:intergenic 40.0%
CCTACAAGGATTATAACCCA+TGG - chr1_1:9642799-9642818 Msa0006650:five_prime_UTR 40.0%
CGCTTAACTGCAGATTCTGA+TGG + chr1_1:9639613-9639632 None:intergenic 45.0%
AGAAGGGGGAAATGTCTTTC+GGG - chr1_1:9639744-9639763 Msa0006650:CDS 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG + chr1_1:9640375-9640394 None:intergenic 45.0%
GCAAGCCAAACATCACCAAA+GGG + chr1_1:9640463-9640482 None:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG + chr1_1:9640464-9640483 None:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG - chr1_1:9640785-9640804 Msa0006650:CDS 45.0%
TGGCTAGACTAAGAGATGGA+TGG - chr1_1:9640805-9640824 Msa0006650:CDS 45.0%
TCAGATATTGCTCAGAGGCT+TGG - chr1_1:9641107-9641126 Msa0006650:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG - chr1_1:9641148-9641167 Msa0006650:CDS 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG + chr1_1:9641152-9641171 None:intergenic 45.0%
! GAAACGGATTCATGGGGATT+CGG - chr1_1:9641191-9641210 Msa0006650:intron 45.0%
! TGTTGACTGGTAGTCAACCT+TGG - chr1_1:9641231-9641250 Msa0006650:intron 45.0%
ACTGGTAGTCAACCTTGGTA+TGG - chr1_1:9641236-9641255 Msa0006650:intron 45.0%
GAAAAGCTGCATATCCCAAG+TGG - chr1_1:9641302-9641321 Msa0006650:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG + chr1_1:9641639-9641658 None:intergenic 45.0%
AGATTGGGTAGGTCTGTTGT+AGG - chr1_1:9641639-9641658 Msa0006650:CDS 45.0%
TGTTGTAGGACTAGAGCTCA+AGG - chr1_1:9641653-9641672 Msa0006650:CDS 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG - chr1_1:9641738-9641757 Msa0006650:CDS 45.0%
CAGACATTATCCTGGATCAG+AGG + chr1_1:9641751-9641770 None:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG + chr1_1:9641910-9641929 None:intergenic 45.0%
TTGCAGGTCACTGAATGAAC+TGG - chr1_1:9641913-9641932 Msa0006650:five_prime_UTR 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG + chr1_1:9641986-9642005 None:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG + chr1_1:9642011-9642030 None:intergenic 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG + chr1_1:9642021-9642040 None:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG - chr1_1:9642018-9642037 Msa0006650:five_prime_UTR 45.0%
CTCAAAGGATCAACTTCAGG+TGG - chr1_1:9642021-9642040 Msa0006650:five_prime_UTR 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG - chr1_1:9642148-9642167 Msa0006650:five_prime_UTR 45.0%
ATGGAATGTAGAATCCCCAC+CGG + chr1_1:9642280-9642299 None:intergenic 45.0%
TCTACCGTCATTGCGATTGA+TGG + chr1_1:9642299-9642318 None:intergenic 45.0%
AATGACGGTAGAGCTTCTGT+TGG - chr1_1:9642307-9642326 Msa0006650:five_prime_UTR 45.0%
TTATTGGGCTGCAAACTCTC+TGG - chr1_1:9642332-9642351 Msa0006650:five_prime_UTR 45.0%
!! CTGCCATTTCGAGTTCTGAA+GGG + chr1_1:9642366-9642385 None:intergenic 45.0%
!! TCTGCCATTTCGAGTTCTGA+AGG + chr1_1:9642367-9642386 None:intergenic 45.0%
AATGGCAGAATCATTCTGCG+TGG - chr1_1:9642378-9642397 Msa0006650:five_prime_UTR 45.0%
ATGGCAGAATCATTCTGCGT+GGG - chr1_1:9642379-9642398 Msa0006650:five_prime_UTR 45.0%
! TGTTAAGCCCTCGATTCGAA+TGG - chr1_1:9642428-9642447 Msa0006650:five_prime_UTR 45.0%
GATTCGAATGGCGTCGTAAA+AGG - chr1_1:9642440-9642459 Msa0006650:five_prime_UTR 45.0%
TTCGAATGGCGTCGTAAAAG+GGG - chr1_1:9642442-9642461 Msa0006650:five_prime_UTR 45.0%
TGAAATCCTACCAGTAGCAG+AGG + chr1_1:9642473-9642492 None:intergenic 45.0%
CTGCTACTGGTAGGATTTCA+TGG - chr1_1:9642473-9642492 Msa0006650:five_prime_UTR 45.0%
! TTTCCAGGGATGGTGAGTTT+TGG - chr1_1:9642526-9642545 Msa0006650:five_prime_UTR 45.0%
! TTCCAGGGATGGTGAGTTTT+GGG - chr1_1:9642527-9642546 Msa0006650:five_prime_UTR 45.0%
AACTTCAACCTCGGAAGGAT+CGG + chr1_1:9642572-9642591 None:intergenic 45.0%
TCAACAACTTCAACCTCGGA+AGG + chr1_1:9642577-9642596 None:intergenic 45.0%
TAACCCATGGCAACACAACA+TGG - chr1_1:9642812-9642831 Msa0006650:five_prime_UTR 45.0%
AACCCATGGCAACACAACAT+GGG - chr1_1:9642813-9642832 Msa0006650:five_prime_UTR 45.0%
TGTTTGGCCGAGAGTAGTAC+TGG - chr1_1:9639633-9639652 Msa0006650:CDS 50.0%
GTTTGGCCGAGAGTAGTACT+GGG - chr1_1:9639634-9639653 Msa0006650:CDS 50.0%
ACCCATCCCAGTACTACTCT+CGG + chr1_1:9639643-9639662 None:intergenic 50.0%
AGTGCAACACAAGGACTTCC+CGG + chr1_1:9639672-9639691 None:intergenic 50.0%
GAGGGATGAAGTGCAACACA+AGG + chr1_1:9639681-9639700 None:intergenic 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG + chr1_1:9640368-9640387 None:intergenic 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG + chr1_1:9640376-9640395 None:intergenic 50.0%
AATCCATGGACTTGCGCGAT+TGG + chr1_1:9640398-9640417 None:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG + chr1_1:9640447-9640466 None:intergenic 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG - chr1_1:9640455-9640474 Msa0006650:intron 50.0%
! TATGGGATCGATCTGGCTCA+AGG - chr1_1:9640948-9640967 Msa0006650:CDS 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG - chr1_1:9641047-9641066 Msa0006650:CDS 50.0%
CAATGGAAACCAGAGGTCAG+AGG - chr1_1:9641155-9641174 Msa0006650:intron 50.0%
CCAACAGGACATCCATACCA+AGG + chr1_1:9641251-9641270 None:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG - chr1_1:9641248-9641267 Msa0006650:intron 50.0%
AAGCTGTTTGTGCACGAGCA+TGG - chr1_1:9641800-9641819 Msa0006650:CDS 50.0%
! GAACTGGCTAATGATGGAGG+AGG - chr1_1:9641929-9641948 Msa0006650:five_prime_UTR 50.0%
! TGGCTAATGATGGAGGAGGA+TGG - chr1_1:9641933-9641952 Msa0006650:five_prime_UTR 50.0%
GGAGGAGGATGGAGATATCA+AGG - chr1_1:9641944-9641963 Msa0006650:five_prime_UTR 50.0%
TCAACTTCAGGTGGGTGACA+TGG - chr1_1:9642030-9642049 Msa0006650:five_prime_UTR 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG + chr1_1:9642057-9642076 None:intergenic 50.0%
! TGAGCTTTGCATGAGTTGGG+AGG + chr1_1:9642070-9642089 None:intergenic 50.0%
ACTCTTGAACGCGTCACGAA+TGG - chr1_1:9642202-9642221 Msa0006650:five_prime_UTR 50.0%
!! AAAGGAAAAGCACTCACCGG+TGG - chr1_1:9642261-9642280 Msa0006650:five_prime_UTR 50.0%
!! AAGGAAAAGCACTCACCGGT+GGG - chr1_1:9642262-9642281 Msa0006650:five_prime_UTR 50.0%
TACGACGCCATTCGAATCGA+GGG + chr1_1:9642438-9642457 None:intergenic 50.0%
TTACGACGCCATTCGAATCG+AGG + chr1_1:9642439-9642458 None:intergenic 50.0%
AATGGCGTCGTAAAAGGGGA+GGG - chr1_1:9642446-9642465 Msa0006650:five_prime_UTR 50.0%
GGTTGTCAAGTTTCCAGGGA+TGG - chr1_1:9642516-9642535 Msa0006650:five_prime_UTR 50.0%
TTCCCAAAACTCACCATCCC+TGG + chr1_1:9642532-9642551 None:intergenic 50.0%
ACCCATGGCAACACAACATG+GGG - chr1_1:9642814-9642833 Msa0006650:five_prime_UTR 50.0%
! GCCGAGAGTAGTACTGGGAT+GGG - chr1_1:9639639-9639658 Msa0006650:CDS 55.0%
GTGCAACACAAGGACTTCCC+GGG + chr1_1:9639671-9639690 None:intergenic 55.0%
CATGGACTTGCGCGATTGGT+CGG + chr1_1:9640394-9640413 None:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG - chr1_1:9640436-9640455 Msa0006650:intron 55.0%
CGAATTGGTCGAGGACCCTT+TGG - chr1_1:9640445-9640464 Msa0006650:intron 55.0%
TGGCAGGTATGGGATCGATC+TGG - chr1_1:9640941-9640960 Msa0006650:CDS 55.0%
TGGGAGAAGGAAGGCCACTT+GGG + chr1_1:9641319-9641338 None:intergenic 55.0%
ATGGGAGAAGGAAGGCCACT+TGG + chr1_1:9641320-9641339 None:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG - chr1_1:9642006-9642025 Msa0006650:five_prime_UTR 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG + chr1_1:9642062-9642081 None:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG + chr1_1:9642105-9642124 None:intergenic 55.0%
AAGCCAACGACAGTTCCGTC+TGG + chr1_1:9642106-9642125 None:intergenic 55.0%
!! AGGAAAAGCACTCACCGGTG+GGG - chr1_1:9642263-9642282 Msa0006650:five_prime_UTR 55.0%
! GGGCTGCAAACTCTCTGGAA+TGG - chr1_1:9642337-9642356 Msa0006650:five_prime_UTR 55.0%
! TCTGCGTGGGCCAGTTTGTT+AGG - chr1_1:9642392-9642411 Msa0006650:five_prime_UTR 55.0%
GAATGGCGTCGTAAAAGGGG+AGG - chr1_1:9642445-9642464 Msa0006650:five_prime_UTR 55.0%
ATGGCGTCGTAAAAGGGGAG+GGG - chr1_1:9642447-9642466 Msa0006650:five_prime_UTR 55.0%
CCCCCATGTTGTGTTGCCAT+GGG + chr1_1:9642818-9642837 None:intergenic 55.0%
CCCATGGCAACACAACATGG+GGG - chr1_1:9642815-9642834 Msa0006650:five_prime_UTR 55.0%
CCATGGCAACACAACATGGG+GGG - chr1_1:9642816-9642835 Msa0006650:five_prime_UTR 55.0%
! GGCCGAGAGTAGTACTGGGA+TGG - chr1_1:9639638-9639657 Msa0006650:CDS 60.0%
TACTGGGATGGGTGACCTCC+CGG - chr1_1:9639650-9639669 Msa0006650:CDS 60.0%
CAACACAAGGACTTCCCGGG+AGG + chr1_1:9639668-9639687 None:intergenic 60.0%
CGACCAATCGCGCAAGTCCA+TGG - chr1_1:9640392-9640411 Msa0006650:intron 60.0%
GACATAGGGCCTCTGACCTC+TGG + chr1_1:9641167-9641186 None:intergenic 60.0%
!! GCAGCACTGACTACACCGAG+TGG - chr1_1:9641993-9642012 Msa0006650:five_prime_UTR 60.0%
GTCCCAGACGGAACTGTCGT+TGG - chr1_1:9642100-9642119 Msa0006650:five_prime_UTR 60.0%
TGAACGCGTCACGAATGGCC+TGG - chr1_1:9642207-9642226 Msa0006650:five_prime_UTR 60.0%
ATGGCCTGGCAGCTGGTGAT+TGG - chr1_1:9642221-9642240 Msa0006650:five_prime_UTR 60.0%
TGGCCTGGCAGCTGGTGATT+GGG - chr1_1:9642222-9642241 Msa0006650:five_prime_UTR 60.0%
GTACCCAATCACCAGCTGCC+AGG + chr1_1:9642228-9642247 None:intergenic 60.0%
AACCTCGGAAGGATCGGCCA+AGG + chr1_1:9642566-9642585 None:intergenic 60.0%
CCCCCCATGTTGTGTTGCCA+TGG + chr1_1:9642819-9642838 None:intergenic 60.0%
ACTGGGATGGGTGACCTCCC+GGG - chr1_1:9639651-9639670 Msa0006650:CDS 65.0%
GTCACGAATGGCCTGGCAGC+TGG - chr1_1:9642214-9642233 Msa0006650:five_prime_UTR 65.0%
GAGGGGCCTCTGCTACTGGT+AGG - chr1_1:9642464-9642483 Msa0006650:five_prime_UTR 65.0%
CACCTTGGCCGATCCTTCCG+AGG - chr1_1:9642561-9642580 Msa0006650:five_prime_UTR 65.0%
AGGGGAGGGGCCTCTGCTAC+TGG - chr1_1:9642460-9642479 Msa0006650:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9638971 9643143 9638971 ID=Msa0006650;Name=Msa0006650
chr1_1 mRNA 9638971 9643143 9638971 ID=Msa0006650-mRNA-1;Parent=Msa0006650;Name=Msa0006650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1300|1|1|1|1|1|4|264|639
chr1_1 exon 9638971 9640195 9638971 ID=Msa0006650-mRNA-1:exon:3434;Parent=Msa0006650-mRNA-1
chr1_1 exon 9640694 9641167 9640694 ID=Msa0006650-mRNA-1:exon:3433;Parent=Msa0006650-mRNA-1
chr1_1 exon 9641264 9641355 9641264 ID=Msa0006650-mRNA-1:exon:3432;Parent=Msa0006650-mRNA-1
chr1_1 exon 9641451 9643143 9641451 ID=Msa0006650-mRNA-1:exon:3431;Parent=Msa0006650-mRNA-1
chr1_1 five_prime_UTR 9641844 9643143 9641844 ID=Msa0006650-mRNA-1:five_prime_utr;Parent=Msa0006650-mRNA-1
chr1_1 CDS 9641451 9641843 9641451 ID=Msa0006650-mRNA-1:cds;Parent=Msa0006650-mRNA-1
chr1_1 CDS 9641264 9641355 9641264 ID=Msa0006650-mRNA-1:cds;Parent=Msa0006650-mRNA-1
chr1_1 CDS 9640694 9641167 9640694 ID=Msa0006650-mRNA-1:cds;Parent=Msa0006650-mRNA-1
chr1_1 CDS 9639235 9640195 9639235 ID=Msa0006650-mRNA-1:cds;Parent=Msa0006650-mRNA-1
chr1_1 three_prime_UTR 9638971 9639234 9638971 ID=Msa0006650-mRNA-1:three_prime_utr;Parent=Msa0006650-mRNA-1
Gene Sequence

>Msa0006650

ATGAGTATTACAACCTTAGATTCAGGAATGTCTAGAGAAGTCATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCAAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATTATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTATGGGATCGATCTGGCTCAAGGCATTCTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAAGCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAATGGCCTGGCAGCTGGTGATTGGGTACGCTTGAAAGATGAAAAGGAAAAGCACTCACCGGTGGGGATTCTACATTCCATCAATCGCAATGACGGTAGAGCTTCTGTTGGATTTATTGGGCTGCAAACTCTCTGGAATGGAAACCCTTCAGAACTCGAAATGGCAGAATCATTCTGCGTGGGCCAGTTTGTTAGGCCAAAAGAGAATGTGTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCTGCTACTGGTAGGATTTCATGGATACTACCAAATGGGTGTTTGGTTGTCAAGTTTCCAGGGATGGTGAGTTTTGGGAATGAATCAAACACCTTGGCCGATCCTTCCGAGGTTGAAGTTGTTGATTTTAACACTTGTCCTGGGATGGTAGAAAAGTATCAACATGTTGAGGATCATCACTGGGCTGTAAGACCTGTTCTAGTTGTACTAGGCATATTTACAGCTTTGAAACTAGGCATATTAGTTGGAAACAAAGTGAAAAGGTGCAAGAGGTTCAATGCAAAAGAAAGCAAAAACCAACATGTTGAAGGTCAAAACACAAACAGTCCTACAAGGATTATAACCCATGGCAACACAACATGGGGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA
Protein sequence

>Msa0006650

MSITTLDSGMSREVMASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDYVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKAQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTNGLAAGDWVRLKDEKEKHSPVGILHSINRNDGRASVGFIGLQTLWNGNPSELEMAESFCVGQFVRPKENVLSPRFEWRRKRGGASATGRISWILPNGCLVVKFPGMVSFGNESNTLADPSEVEVVDFNTCPGMVEKYQHVEDHHWAVRPVLVVLGIFTALKLGILVGNKVKRCKRFNAKESKNQHVEGQNTNSPTRIITHGNTTWGVPSVANILFKDGA*