AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0055240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055240 MtrunA17_Chr1g0149451 95.577 633 26 2 8 638 9 641 0.0 1248
Msa0055240 MtrunA17_Chr3g0082141 31.229 301 175 6 52 325 141 436 3.95e-36 145
Msa0055240 MtrunA17_Chr1g0164561 33.333 219 120 4 132 325 7 224 3.69e-34 130
Msa0055240 MtrunA17_Chr5g0406251 26.689 296 193 10 35 325 275 551 4.26e-22 100
Msa0055240 MtrunA17_Chr4g0047211 29.293 198 132 3 133 329 116 306 6.17e-20 92.0
Msa0055240 MtrunA17_Chr4g0047191 29.293 198 132 3 133 329 121 311 7.33e-20 91.7
Msa0055240 MtrunA17_Chr5g0427651 25.497 302 203 8 33 327 623 909 1.34e-18 90.5
Msa0055240 MtrunA17_Chr4g0047201 28.283 198 134 3 133 329 277 467 2.95e-18 88.2
Msa0055240 MtrunA17_Chr2g0282321 29.293 198 132 3 133 329 238 428 8.82e-18 86.7
Msa0055240 MtrunA17_Chr1g0211611 24.917 301 200 11 39 333 285 565 4.74e-17 84.7
Msa0055240 MtrunA17_Chr3g0132791 25.733 307 203 9 33 329 630 921 9.27e-17 84.7
Msa0055240 MtrunA17_Chr3g0117811 21.802 344 225 9 1 319 11 335 5.70e-16 80.1
Msa0055240 MtrunA17_Chr3g0133541 26.642 274 179 8 60 324 313 573 9.88e-16 80.9
Msa0055240 MtrunA17_Chr2g0286501 35.766 137 83 4 144 277 126 260 4.02e-14 76.3
Msa0055240 MtrunA17_Chr5g0394681 26.087 184 129 3 133 315 181 358 4.74e-14 74.3
Msa0055240 MtrunA17_Chr4g0025041 28.313 166 106 5 153 316 91 245 5.12e-14 74.3
Msa0055240 MtrunA17_Chr1g0205071 23.810 189 137 3 133 320 173 355 5.73e-14 73.9
Msa0055240 MtrunA17_Chr8g0392871 25.180 278 183 9 47 319 735 992 7.00e-14 75.5
Msa0055240 MtrunA17_Chr6g0482711 31.056 161 103 4 161 319 759 913 2.37e-13 73.6
Msa0055240 MtrunA17_Chr4g0042731 24.837 306 203 11 35 328 121 411 3.04e-13 72.0
Msa0055240 MtrunA17_Chr4g0075541 25.253 198 139 4 133 329 162 351 3.28e-13 71.6
Msa0055240 MtrunA17_Chr3g0143531 22.909 275 177 5 54 318 25 274 3.95e-13 70.5
Msa0055240 MtrunA17_Chr5g0397931 28.977 176 109 5 161 326 522 691 5.72e-13 72.0
Msa0055240 MtrunA17_Chr7g0258051 23.308 266 190 6 52 316 14 266 5.88e-13 72.0
Msa0055240 MtrunA17_Chr1g0179331 28.322 286 176 11 45 322 549 813 1.28e-12 71.2
Msa0055240 MtrunA17_Chr1g0191171 24.841 314 197 10 24 319 650 942 2.29e-12 70.5
Msa0055240 MtrunA17_Chr2g0299991 26.000 200 129 7 129 316 138 330 3.28e-11 65.5
Msa0055240 MtrunA17_Chr5g0424501 27.381 168 108 5 149 315 286 440 3.70e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0055240 AT4G32250.3 63.130 575 200 6 24 594 14 580 0.0 740
Msa0055240 AT4G32250.2 63.130 575 200 6 24 594 14 580 0.0 740
Msa0055240 AT4G32250.1 63.130 575 200 6 24 594 14 580 0.0 740
Msa0055240 AT5G13530.2 31.894 301 172 9 54 325 137 433 3.80e-36 146
Msa0055240 AT5G13530.1 31.894 301 172 9 54 325 137 433 4.01e-36 146
Msa0055240 AT4G24480.1 26.866 335 204 10 22 330 624 943 3.23e-19 92.8
Msa0055240 AT4G24480.3 26.888 331 204 10 22 330 624 938 2.57e-18 90.1
Msa0055240 AT4G24480.2 26.888 331 204 10 22 330 624 938 2.72e-18 89.7
Msa0055240 AT4G35780.1 23.779 307 208 11 29 328 264 551 6.55e-18 88.2
Msa0055240 AT2G17700.1 23.795 332 222 13 6 325 230 542 9.98e-18 87.4
Msa0055240 AT4G38470.2 24.839 310 209 10 22 326 257 547 1.17e-17 87.0
Msa0055240 AT4G38470.1 25.484 310 203 11 22 326 257 543 2.10e-17 86.3
Msa0055240 AT1G05100.1 32.044 181 106 7 141 315 89 258 2.67e-16 81.3
Msa0055240 AT3G63260.1 25.521 192 135 3 130 319 178 363 1.00e-15 80.1
Msa0055240 AT3G01490.1 22.772 303 212 6 33 319 87 383 2.78e-15 79.0
Msa0055240 AT4G26890.1 28.108 185 119 4 134 316 77 249 1.47e-14 77.0
Msa0055240 AT5G01850.1 27.363 201 131 5 132 325 90 282 1.95e-14 75.5
Msa0055240 AT5G01850.2 27.363 201 131 5 132 325 114 306 2.28e-14 75.5
Msa0055240 AT3G46930.1 26.131 199 138 4 133 329 240 431 3.05e-14 76.3
Msa0055240 AT3G46930.2 26.131 199 138 4 133 329 275 466 3.59e-14 75.9
Msa0055240 AT4G38470.3 25.856 263 171 10 22 279 257 500 4.54e-14 75.5
Msa0055240 AT1G08720.1 26.761 284 182 9 47 325 665 927 1.10e-13 75.1
Msa0055240 AT1G62400.1 25.253 198 139 4 133 329 161 350 1.77e-13 73.2
Msa0055240 AT5G11850.1 24.818 274 184 7 52 320 607 863 2.72e-13 73.9
Msa0055240 AT1G73660.1 24.088 274 186 7 52 320 746 1002 4.92e-13 73.2
Msa0055240 AT1G32320.1 26.493 268 163 11 60 316 54 298 6.75e-13 70.5
Msa0055240 AT5G58950.1 25.126 199 141 3 133 330 284 475 7.41e-13 72.0
Msa0055240 AT2G42640.4 28.571 182 118 6 138 319 567 736 1.75e-12 71.2
Msa0055240 AT3G45790.1 28.571 231 143 6 44 264 92 310 1.95e-12 69.7
Msa0055240 AT2G42640.1 28.571 182 118 6 138 319 605 774 2.14e-12 70.9
Msa0055240 AT1G18160.1 24.088 274 186 7 52 320 713 969 2.70e-12 70.9
Msa0055240 AT5G03730.2 26.071 280 180 11 47 319 547 806 6.92e-12 69.3
Msa0055240 AT5G03730.1 26.071 280 180 11 47 319 547 806 6.92e-12 69.3
Msa0055240 AT3G46140.1 27.897 233 146 6 42 264 90 310 8.67e-12 67.8
Msa0055240 AT4G23050.2 29.299 157 103 4 161 315 567 717 1.01e-11 68.6
Msa0055240 AT4G23050.1 29.299 157 103 4 161 315 566 716 1.02e-11 68.6
Msa0055240 AT4G29810.3 27.363 201 125 8 129 318 147 337 1.47e-11 66.6
Msa0055240 AT4G29810.1 27.136 199 124 8 129 316 138 326 3.78e-11 65.9
Msa0055240 AT4G29810.2 27.136 199 124 8 129 316 147 335 4.31e-11 65.5

Find 228 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGAGTTGGGAGGCTTTC+TGG 0.085084 1_2:+10193241 None:intergenic
AAACTCTCCTTTCTTAAAAT+TGG 0.109577 1_2:-10196333 Msa0055240:five_prime_UTR
TGACAACGATCAAGCGATTT+TGG 0.146585 1_2:-10194263 Msa0055240:CDS
GGTCGAGTGTTAAGTTTATT+TGG 0.158606 1_2:-10195398 Msa0055240:five_prime_UTR
GATTCGAATGGCGTCGTAAA+AGG 0.159414 1_2:-10192860 Msa0055240:CDS
GAAGAACATTACATGGTTTA+AGG 0.171246 1_2:+10194290 None:intergenic
AGAGCTTCTGTTGGATTTAT+TGG 0.180068 1_2:-10192984 Msa0055240:CDS
ACCTCTGGTTTCCATTGTTC+TGG 0.192206 1_2:+10194151 None:intergenic
GTCGAGTGTTAAGTTTATTT+GGG 0.203719 1_2:-10195397 Msa0055240:five_prime_UTR
CATGGAATTTCAATGTTAAA+TGG 0.209362 1_2:-10194663 Msa0055240:CDS
AAGTTGTAAATATCCTTTAA+AGG 0.215622 1_2:-10192250 Msa0055240:three_prime_UTR
TAAGTCAATGAAGATGTATT+TGG 0.232759 1_2:-10195241 Msa0055240:five_prime_UTR
GTTAAGCACCATCTTTAAAA+AGG 0.241242 1_2:+10192445 None:intergenic
TGAATAACATTAGTTGAAAA+TGG 0.243158 1_2:-10192318 Msa0055240:three_prime_UTR
TGTTCTGGAGCCATGTAATT+AGG 0.250797 1_2:+10194166 None:intergenic
ATACAGAGCTAATCCTTTAA+AGG 0.253814 1_2:+10192237 None:intergenic
GAGCTTCTGTTGGATTTATT+GGG 0.274049 1_2:-10192983 Msa0055240:CDS
TAAAGAAACAACCTTTGTTT+TGG 0.297214 1_2:+10196268 None:intergenic
TGCTGAAGTTTCAAAGGTTC+AGG 0.298858 1_2:+10194879 None:intergenic
GGTGTTTATTTAGGCATTAA+AGG 0.300816 1_2:-10195861 Msa0055240:five_prime_UTR
TTAGAACGTACTGCAGATTA+TGG 0.302417 1_2:-10193176 Msa0055240:CDS
TCTAGACATTCCTGAATCTA+AGG 0.302873 1_2:+10195016 None:intergenic
GGGCTTAACACATTCTCTTT+TGG 0.303938 1_2:+10192885 None:intergenic
TTTCCAGGGATGGTGAGTTT+TGG 0.309534 1_2:-10192774 Msa0055240:CDS
ATATTCTGCGCGTCTTTAAA+AGG 0.310548 1_2:-10193901 Msa0055240:intron
GTCGATGTATGAATTCTTAT+AGG 0.311891 1_2:+10193119 None:intergenic
TGTTTGGTTGTCAAGTTTCC+AGG 0.313479 1_2:-10192789 Msa0055240:CDS
TAGTCAGTGCTGCCTGATTT+TGG 0.315215 1_2:+10193317 None:intergenic
GTATCTGTTGACTTTCTTGT+TGG 0.318605 1_2:-10195978 Msa0055240:five_prime_UTR
TTCACATGATCCTCTTTGAT+TGG 0.322968 1_2:+10194753 None:intergenic
TCTGCGTGGGCCAGTTTGTT+AGG 0.324940 1_2:-10192908 Msa0055240:CDS
TTTACTTGATATCACTTCAT+AGG 0.337285 1_2:-10195446 Msa0055240:five_prime_UTR
CTGCTACTGGTAGGATTTCA+TGG 0.337558 1_2:-10192827 Msa0055240:CDS
AGTATTACAACCTTAGATTC+AGG 0.360396 1_2:-10195026 Msa0055240:CDS
GAGGACCCTTTGGTGATGTT+TGG 0.361104 1_2:-10194845 Msa0055240:CDS
CCATGGGTTATAATCCTTGT+AGG 0.362031 1_2:+10192504 None:intergenic
TTCTAGAGCTTCACGCTAAA+GGG 0.362481 1_2:-10194327 Msa0055240:CDS
TACTGGGATGGGTGACCTCC+TGG 0.365679 1_2:-10195650 Msa0055240:five_prime_UTR
TGTTTGGCCGAGAGTAATAC+TGG 0.367334 1_2:-10195667 Msa0055240:five_prime_UTR
AAGGAGTTTCTAGTGTTTGC+TGG 0.368878 1_2:-10194689 Msa0055240:CDS
ATCATATAGGATTTGAGTTC+AGG 0.372845 1_2:-10195833 Msa0055240:five_prime_UTR
ACATCTTAGCAGCAACTTCA+TGG 0.384443 1_2:+10194781 None:intergenic
TTGAAACTTCAGCACCGAAT+TGG 0.395091 1_2:-10194870 Msa0055240:CDS
GAAACGGATTCATGGGGATT+CGG 0.395952 1_2:-10194109 Msa0055240:CDS
ATTCGAATGGCGTCGTAAAA+GGG 0.398237 1_2:-10192859 Msa0055240:CDS
CCTCTCAAAGGATCAACTTC+AGG 0.398972 1_2:-10193282 Msa0055240:CDS
TTGAAACTAGGCATATTAGT+TGG 0.401044 1_2:-10192603 Msa0055240:CDS
TCGATGTATGAATTCTTATA+GGG 0.403661 1_2:+10193120 None:intergenic
CGAATTGGTCGAGGACCCTT+TGG 0.406343 1_2:-10194855 Msa0055240:CDS
GAACAATCGAAATGGAATCT+TGG 0.408065 1_2:+10196290 None:intergenic
TCTACCGTCATTGCGATTGA+TGG 0.408374 1_2:+10193004 None:intergenic
ATATTTACAGCTTTGAAACT+AGG 0.412019 1_2:-10192615 Msa0055240:CDS
TGAAGAGCCAAGCAAAAGAT+TGG 0.413672 1_2:+10194225 None:intergenic
AATCTGCAGTTAAGCGTGTT+TGG 0.415346 1_2:-10195683 Msa0055240:five_prime_UTR
ATGAAAGTAATTCCAAAATC+AGG 0.416519 1_2:-10193329 Msa0055240:CDS
ATGGCCTGGCAGCTGGTGAT+TGG 0.421439 1_2:-10193079 Msa0055240:CDS
TTATTGGGCTGCAAACTCTC+TGG 0.426673 1_2:-10192968 Msa0055240:CDS
AGGGGAGGGGCCTCTGCTAC+TGG 0.429138 1_2:-10192840 Msa0055240:CDS
TTGACAACCAAACACCCATT+TGG 0.430784 1_2:+10192798 None:intergenic
ATGCCTAGTACAACTAGAAC+AGG 0.431258 1_2:+10192636 None:intergenic
TGTCATTTGAAACGGATTCA+TGG 0.434134 1_2:-10194117 Msa0055240:CDS
GGAGGAGGATGGAGATATCA+AGG 0.438936 1_2:-10193356 Msa0055240:CDS
TCTGTTGACTTTCTTGTTGG+TGG 0.439907 1_2:-10195975 Msa0055240:five_prime_UTR
GTGTTTATTTAGGCATTAAA+GGG 0.442276 1_2:-10195860 Msa0055240:five_prime_UTR
TGTCCTGTTGGTGAAATATA+CGG 0.443667 1_2:-10194040 Msa0055240:CDS
GATACTACCAAATGGGTGTT+TGG 0.448805 1_2:-10192805 Msa0055240:CDS
TTCCCAAAACTCACCATCCC+TGG 0.449001 1_2:+10192771 None:intergenic
GTCATTTGAAACGGATTCAT+GGG 0.449610 1_2:-10194116 Msa0055240:CDS
ATTCTAGAGCTTCACGCTAA+AGG 0.452406 1_2:-10194328 Msa0055240:CDS
TTTGAGGAATCGACCTTCAA+TGG 0.455368 1_2:-10193927 Msa0055240:CDS
GTCACGAATGGCCTGGCAGC+TGG 0.457715 1_2:-10193086 Msa0055240:CDS
TCTAGTGTTTGCTGGTTACA+TGG 0.459137 1_2:-10194681 Msa0055240:CDS
GAAAGTACAGCTGATAGAAT+TGG 0.460485 1_2:+10192356 None:intergenic
TCTCCCATTGAGAATATCCT+TGG 0.462519 1_2:-10193968 Msa0055240:CDS
CGACCAATCGCGCTAGTCCA+TGG 0.462779 1_2:-10194908 Msa0055240:CDS
CAAAGGGTCCTCGACCAATT+CGG 0.467685 1_2:+10194856 None:intergenic
ATTTCATGGATACTACCAAA+TGG 0.474128 1_2:-10192813 Msa0055240:CDS
ATTAAAGGGTAGCATCATAT+AGG 0.475210 1_2:-10195846 Msa0055240:five_prime_UTR
GACATAGGGCCTCTGACCTC+TGG 0.481700 1_2:+10194136 None:intergenic
GGTTGTCAAGTTTCCAGGGA+TGG 0.483297 1_2:-10192784 Msa0055240:CDS
GTCTTTCGGGATTGTAAACA+TGG 0.483744 1_2:-10195543 Msa0055240:five_prime_UTR
AAAGGTTCAGGTTCAATCCA+TGG 0.486677 1_2:+10194891 None:intergenic
TCATTAGCTAGTGTTTGAAC+TGG 0.490555 1_2:-10192383 Msa0055240:three_prime_UTR
AGTTGGGAGGCTTTCTGGAT+CGG 0.491406 1_2:+10193246 None:intergenic
AAGCCAACGACAGTTCCGTC+TGG 0.492923 1_2:+10193197 None:intergenic
AGGCCCTATGTCATTTGAAA+CGG 0.494592 1_2:-10194125 Msa0055240:CDS
GAAGAGCCAAGCAAAAGATT+GGG 0.495194 1_2:+10194226 None:intergenic
AAACCCTTCAGAACTCGAAA+TGG 0.495513 1_2:-10192940 Msa0055240:CDS
AAATTGTATGACGGTTCAAT+TGG 0.497991 1_2:-10194526 Msa0055240:CDS
CTGAATGAACTGGCTAATGA+TGG 0.498348 1_2:-10193377 Msa0055240:CDS
GGTACGCTTGAAAGATGAAA+AGG 0.498765 1_2:-10193057 Msa0055240:CDS
AGACCTGTTCTAGTTGTACT+AGG 0.500576 1_2:-10192639 Msa0055240:CDS
TAACCCATGGCAACACAACA+TGG 0.500752 1_2:-10192491 Msa0055240:CDS
AATCCATGGACTAGCGCGAT+TGG 0.501734 1_2:+10194905 None:intergenic
GATCCGTATATTTCACCAAC+AGG 0.502608 1_2:+10194037 None:intergenic
GAGGGGCCTCTGCTACTGGT+AGG 0.503223 1_2:-10192836 Msa0055240:CDS
TGGCCTGGCAGCTGGTGATT+GGG 0.503490 1_2:-10193078 Msa0055240:CDS
ACGTTATTAACATTGAGCTT+AGG 0.503963 1_2:+10195096 None:intergenic
ATGGGAGAAGGAAGGCCACT+TGG 0.504464 1_2:+10193983 None:intergenic
AACTTCAACCTCGGAAGGAT+CGG 0.506263 1_2:+10192731 None:intergenic
TGCACCAAGGATATTCTCAA+TGG 0.506987 1_2:+10193964 None:intergenic
CGCAGAATATCTACCATTGA+AGG 0.507993 1_2:+10193914 None:intergenic
GAATTTCAATGTTAAATGGA+AGG 0.512178 1_2:-10194659 Msa0055240:CDS
TTTCTTGTTGGTGGTTGATG+AGG 0.512270 1_2:-10195966 Msa0055240:five_prime_UTR
CTCAAAGGATCAACTTCAGG+TGG 0.513886 1_2:-10193279 Msa0055240:CDS
TTATGGATTTGTTCTAGTGA+GGG 0.514209 1_2:-10193159 Msa0055240:CDS
TCAGATATTGCTCAGAGGCT+TGG 0.514336 1_2:-10194193 Msa0055240:CDS
GTTTGGTTGTCAAGTTTCCA+GGG 0.514420 1_2:-10192788 Msa0055240:CDS
TTGATGAGGGAACAAGTGAT+TGG 0.514638 1_2:-10195952 Msa0055240:five_prime_UTR
CAGAAAATTTCAAAGATCAC+AGG 0.514716 1_2:+10195061 None:intergenic
ATTGTAAACATGGGTATCAA+TGG 0.516132 1_2:-10195533 Msa0055240:five_prime_UTR
ACACATCACCTCAAAACATC+AGG 0.516904 1_2:+10194463 None:intergenic
ATGGTTTAAGGTTGAGAACA+AGG 0.524109 1_2:+10194302 None:intergenic
AATTTCAATGTTAAATGGAA+GGG 0.525630 1_2:-10194658 Msa0055240:intron
TTGCAGGTCACTGAATGAAC+TGG 0.528545 1_2:-10193387 Msa0055240:intron
CGCTTAACTGCAGATTCTGA+TGG 0.530436 1_2:+10195690 None:intergenic
TTTCGATTGTTCCAAAACAA+AGG 0.530834 1_2:-10196279 Msa0055240:five_prime_UTR
AGTGTTAAGTTTATTTGGGG+TGG 0.531086 1_2:-10195393 Msa0055240:five_prime_UTR
TCTGCCATTTCGAGTTCTGA+AGG 0.531466 1_2:+10192936 None:intergenic
GTACCCAATCACCAGCTGCC+AGG 0.532200 1_2:+10193075 None:intergenic
TTTCATGGATACTACCAAAT+GGG 0.532985 1_2:-10192812 Msa0055240:CDS
AGCAAACACTAGAAACTCCT+TGG 0.533146 1_2:+10194691 None:intergenic
TGAACGCGTCACGAATGGCC+TGG 0.537908 1_2:-10193093 Msa0055240:CDS
CACCGAGTGGTTCCTCTCAA+AGG 0.541938 1_2:-10193294 Msa0055240:CDS
CCTTGGTATGGATGTCCTGT+TGG 0.543914 1_2:-10194052 Msa0055240:CDS
ATTATGGATTTGTTCTAGTG+AGG 0.545782 1_2:-10193160 Msa0055240:CDS
CATGGACTAGCGCGATTGGT+CGG 0.545987 1_2:+10194909 None:intergenic
TGGCAGGTATGGGATCGATC+TGG 0.548820 1_2:-10194359 Msa0055240:intron
ATTCGGTGCTGAAGTTTCAA+AGG 0.549441 1_2:+10194873 None:intergenic
TTCTTGTTGGTGGTTGATGA+GGG 0.549496 1_2:-10195965 Msa0055240:five_prime_UTR
GGCCGAGAGTAATACTGGGA+TGG 0.549570 1_2:-10195662 Msa0055240:five_prime_UTR
TACGACGCCATTCGAATCGA+GGG 0.550381 1_2:+10192865 None:intergenic
GAATCCGTTTCAAATGACAT+AGG 0.550959 1_2:+10194121 None:intergenic
TCATTGAGAAGAACATTACA+TGG 0.551201 1_2:+10194283 None:intergenic
GCCGAGAGTAATACTGGGAT+GGG 0.551397 1_2:-10195661 Msa0055240:five_prime_UTR
GCACCAAGGATATTCTCAAT+GGG 0.552742 1_2:+10193965 None:intergenic
TCTTGGAGAAACAAAGAACT+AGG 0.554643 1_2:+10196307 None:intergenic
TTCGAATGGCGTCGTAAAAG+GGG 0.556323 1_2:-10192858 Msa0055240:CDS
TAGTTGGAAACAAAGTGAAA+AGG 0.558036 1_2:-10192587 Msa0055240:CDS
AACATGTTGAGGATCATCAC+TGG 0.559885 1_2:-10192668 Msa0055240:CDS
AAAATCAACAACTTCAACCT+CGG 0.561609 1_2:+10192722 None:intergenic
ACTGGTAGTCAACCTTGGTA+TGG 0.562801 1_2:-10194064 Msa0055240:CDS
AAAAGGATATTAGCAACTGA+AGG 0.563136 1_2:+10192462 None:intergenic
TGAGATTTGCATGAGTTGGG+AGG 0.563242 1_2:+10193233 None:intergenic
AACCCATGGCAACACAACAT+GGG 0.563805 1_2:-10192490 Msa0055240:CDS
CTGCCATTTCGAGTTCTGAA+GGG 0.564065 1_2:+10192937 None:intergenic
AGCCAACGACAGTTCCGTCT+GGG 0.566135 1_2:+10193198 None:intergenic
GGGCTGCAAACTCTCTGGAA+TGG 0.566139 1_2:-10192963 Msa0055240:CDS
ACTGGGATGGGTGACCTCCT+GGG 0.566628 1_2:-10195649 Msa0055240:five_prime_UTR
ACTCTTGAACGCGTCACGAA+TGG 0.567776 1_2:-10193098 Msa0055240:CDS
AGGAATGTCTAGAGAAGTCA+TGG 0.568023 1_2:-10195006 Msa0055240:CDS
GTGCAACACAAGGACTTCCC+AGG 0.568792 1_2:+10195632 None:intergenic
GTATTTACATATTTATTCCG+AGG 0.570546 1_2:-10195328 Msa0055240:five_prime_UTR
GTCAAAACAACAGTCCTACA+AGG 0.572453 1_2:-10192518 Msa0055240:CDS
TGGCTAATGATGGAGGAGGA+TGG 0.574319 1_2:-10193367 Msa0055240:CDS
ACCCATGGCAACACAACATG+GGG 0.575393 1_2:-10192489 Msa0055240:CDS
ATTACATGGCTCCAGAACAA+TGG 0.575533 1_2:-10194162 Msa0055240:CDS
TCAACTTCAGGTGGGTGACA+TGG 0.577067 1_2:-10193270 Msa0055240:CDS
AGAAAAGTATCAACATGTTG+AGG 0.578832 1_2:-10192679 Msa0055240:CDS
GTATTTGTTACTTCTTAGAG+TGG 0.581235 1_2:-10195775 Msa0055240:five_prime_UTR
TGCAAGCCAAACATCACCAA+AGG 0.581260 1_2:+10194839 None:intergenic
AGGATATTCTCAATGGGAGA+AGG 0.581766 1_2:+10193971 None:intergenic
TTTGTTCTAGTGAGGGTCCA+CGG 0.582005 1_2:-10193152 Msa0055240:CDS
ACCCATCCCAGTATTACTCT+CGG 0.582388 1_2:+10195660 None:intergenic
TGGGAATGAATCAAACACCT+TGG 0.582420 1_2:-10192754 Msa0055240:CDS
TCAACAACTTCAACCTCGGA+AGG 0.582617 1_2:+10192726 None:intergenic
CATTCCATCAATCGCAATGA+CGG 0.585990 1_2:-10193008 Msa0055240:CDS
TGGGAGAAGGAAGGCCACTT+GGG 0.586231 1_2:+10193984 None:intergenic
CGGTTCAATTGGTGACAAGT+TGG 0.586939 1_2:-10194515 Msa0055240:CDS
AATCCGTTTCAAATGACATA+GGG 0.587008 1_2:+10194122 None:intergenic
TTGTTGTTGCTCAGACAACA+AGG 0.587800 1_2:-10195217 Msa0055240:five_prime_UTR
AAGGAAAAGCACTCACCGGT+GGG 0.588053 1_2:-10193038 Msa0055240:CDS
ACAAAGTGAAAAGGTGCAAG+AGG 0.591652 1_2:-10192578 Msa0055240:CDS
CACCTTGGCCGATCCTTCCG+AGG 0.592446 1_2:-10192739 Msa0055240:CDS
AACCTCGGAAGGATCGGCCA+AGG 0.594129 1_2:+10192737 None:intergenic
TGGCTAGACTAAGAGATGGA+TGG 0.594983 1_2:-10194495 Msa0055240:CDS
TCGAGTGTTAAGTTTATTTG+GGG 0.595131 1_2:-10195396 Msa0055240:five_prime_UTR
GATGTTACATCCAATCAAAG+AGG 0.595757 1_2:-10194763 Msa0055240:CDS
TTACGACGCCATTCGAATCG+AGG 0.595769 1_2:+10192864 None:intergenic
GCAAGCCAAACATCACCAAA+GGG 0.597883 1_2:+10194840 None:intergenic
TATGGGATCGATCTGGCTCA+AGG 0.601763 1_2:-10194352 Msa0055240:CDS
GAATTATGCTTGAAGTGCCA+AGG 0.602260 1_2:-10194708 Msa0055240:CDS
CTTCAGCACCGAATTGGTCG+AGG 0.602330 1_2:-10194864 Msa0055240:CDS
GCTTGGAAGTCCTAATTACA+TGG 0.604254 1_2:-10194176 Msa0055240:CDS
ATCATTATGAAATTGTATGA+CGG 0.604681 1_2:-10194535 Msa0055240:CDS
TGTTGACTGGTAGTCAACCT+TGG 0.606529 1_2:-10194069 Msa0055240:CDS
ACCGTTGTTGAAATGTTGAC+TGG 0.606786 1_2:-10194082 Msa0055240:CDS
CCTGAAGTTGATCCTTTGAG+AGG 0.610469 1_2:+10193282 None:intergenic
AATGGCGTCGTAAAAGGGGA+GGG 0.612881 1_2:-10192854 Msa0055240:CDS
GTCCCAGACGGAACTGTCGT+TGG 0.613432 1_2:-10193200 Msa0055240:CDS
TGTTAAGCCCTCGATTCGAA+TGG 0.618387 1_2:-10192872 Msa0055240:CDS
TCATTTGAAACGGATTCATG+GGG 0.622874 1_2:-10194115 Msa0055240:CDS
TGAAAAGGAAAAGCACTCAC+CGG 0.625000 1_2:-10193042 Msa0055240:CDS
ATGGCAGAATCATTCTGCGT+GGG 0.627438 1_2:-10192921 Msa0055240:CDS
AAGTTGGCTAGACTAAGAGA+TGG 0.628842 1_2:-10194499 Msa0055240:CDS
TGAAATCCTACCAGTAGCAG+AGG 0.629390 1_2:+10192830 None:intergenic
AAAGGAAAAGCACTCACCGG+TGG 0.630780 1_2:-10193039 Msa0055240:CDS
ATCCTTTGAGAGGAACCACT+CGG 0.632608 1_2:+10193292 None:intergenic
ATGGCGTCGTAAAAGGGGAG+GGG 0.637421 1_2:-10192853 Msa0055240:CDS
GAATGGCGTCGTAAAAGGGG+AGG 0.641779 1_2:-10192855 Msa0055240:CDS
TATTCTCAATGGGAGAAGGA+AGG 0.642358 1_2:+10193975 None:intergenic
AATGACGGTAGAGCTTCTGT+TGG 0.643785 1_2:-10192993 Msa0055240:CDS
CAATGGAAACCAGAGGTCAG+AGG 0.644185 1_2:-10194145 Msa0055240:CDS
ACATGTTGAGGATCATCACT+GGG 0.644328 1_2:-10192667 Msa0055240:CDS
GAGGGATGAAGTGCAACACA+AGG 0.648511 1_2:+10195622 None:intergenic
TCAAAGGATCAACTTCAGGT+GGG 0.652726 1_2:-10193278 Msa0055240:CDS
ATGGAATGTAGAATCCCCAC+CGG 0.657028 1_2:+10193023 None:intergenic
GAAAAGCTGCATATCCCAAG+TGG 0.662621 1_2:-10193998 Msa0055240:CDS
ACCAGTCAACATTTCAACAA+CGG 0.664981 1_2:+10194081 None:intergenic
CCTACAAGGATTATAACCCA+TGG 0.667895 1_2:-10192504 Msa0055240:CDS
AATGGCAGAATCATTCTGCG+TGG 0.675086 1_2:-10192922 Msa0055240:CDS
GTTTGGCCGAGAGTAATACT+GGG 0.677161 1_2:-10195666 Msa0055240:five_prime_UTR
TCTTTCGGGATTGTAAACAT+GGG 0.678318 1_2:-10195542 Msa0055240:five_prime_UTR
AATGAACTGGCTAATGATGG+AGG 0.681313 1_2:-10193374 Msa0055240:CDS
CAAAACATGAATGTCCCAGA+CGG 0.682309 1_2:-10193212 Msa0055240:CDS
CCATGGCAACACAACATGGG+GGG 0.686405 1_2:-10192487 Msa0055240:CDS
GTAAACATGGGTATCAATGG+CGG 0.686930 1_2:-10195530 Msa0055240:five_prime_UTR
TTAGCTCAGATATTGCTCAG+AGG 0.694542 1_2:-10194198 Msa0055240:CDS
AGGAAAAGCACTCACCGGTG+GGG 0.698636 1_2:-10193037 Msa0055240:CDS
GAACTGGCTAATGATGGAGG+AGG 0.699870 1_2:-10193371 Msa0055240:CDS
TCCAGAACAATGGAAACCAG+AGG 0.702393 1_2:-10194152 Msa0055240:CDS
CATACTCAAAACATGCACCA+AGG 0.704149 1_2:+10193951 None:intergenic
CCCATGGCAACACAACATGG+GGG 0.707761 1_2:-10192488 Msa0055240:CDS
TTATAGGGTCATGAATACCG+TGG 0.720576 1_2:+10193135 None:intergenic
CCAACAGGACATCCATACCA+AGG 0.725485 1_2:+10194052 None:intergenic
GATAGTGTAGAAACATCACA+TGG 0.731382 1_2:+10195590 None:intergenic
CAACACAAGGACTTCCCAGG+AGG 0.733345 1_2:+10195635 None:intergenic
GCAGCACTGACTACACCGAG+TGG 0.764598 1_2:-10193307 Msa0055240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTCTTTTTTTGA+GGG - chr1_2:10192633-10192652 Msa0055240:CDS 10.0%
!! AAAAATACATAATAAAGAAA+AGG + chr1_2:10193350-10193369 None:intergenic 10.0%
!! TTCAAAATAATGAAAAACAT+TGG + chr1_2:10192386-10192405 None:intergenic 15.0%
!!! CTTAAAAAATTCTTTTTTTG+AGG - chr1_2:10192632-10192651 Msa0055240:CDS 15.0%
!!! TAAAAAATTCTTTTTTTGAG+GGG - chr1_2:10192634-10192653 Msa0055240:CDS 15.0%
!!! ACTATCTTTTTATTTAAAGA+AGG - chr1_2:10192943-10192962 Msa0055240:CDS 15.0%
!!! CTATCTTTTTATTTAAAGAA+GGG - chr1_2:10192944-10192963 Msa0055240:CDS 15.0%
!!! TATCTTTTTATTTAAAGAAG+GGG - chr1_2:10192945-10192964 Msa0055240:CDS 15.0%
!! AAAAAATAAAATGCAAACAA+AGG + chr1_2:10193013-10193032 None:intergenic 15.0%
!!! TTCTTTATTATGTATTTTTG+TGG - chr1_2:10193351-10193370 Msa0055240:CDS 15.0%
!! TCTTTGATAAAAATGAATGA+TGG - chr1_2:10192595-10192614 Msa0055240:CDS 20.0%
!! CTTTGATAAAAATGAATGAT+GGG - chr1_2:10192596-10192615 Msa0055240:CDS 20.0%
!!! ATCTTTTTATTTAAAGAAGG+GGG - chr1_2:10192946-10192965 Msa0055240:CDS 20.0%
!!! TTCTTTTGATTATGAGATTT+TGG - chr1_2:10193549-10193568 Msa0055240:intron 20.0%
!! AATTTCAATGTTAAATGGAA+GGG - chr1_2:10193858-10193877 Msa0055240:intron 20.0%
!! ATCATTATGAAATTGTATGA+CGG - chr1_2:10193981-10194000 Msa0055240:CDS 20.0%
!!! ATCTTTAACTTATATAGCAT+AGG - chr1_2:10194094-10194113 Msa0055240:CDS 20.0%
!!! TCTTTAACTTATATAGCATA+GGG - chr1_2:10194095-10194114 Msa0055240:CDS 20.0%
!! ATGCTAAATTAAACAAGAAT+CGG + chr1_2:10194687-10194706 None:intergenic 20.0%
!! TGAATAACATTAGTTGAAAA+TGG - chr1_2:10196198-10196217 Msa0055240:five_prime_UTR 20.0%
!! AAGTTGTAAATATCCTTTAA+AGG - chr1_2:10196266-10196285 Msa0055240:five_prime_UTR 20.0%
! AAACTCTCCTTTCTTAAAAT+TGG - chr1_2:10192183-10192202 Msa0055240:three_prime_UTR 25.0%
!!! TAGGAATCCAATTTTAAGAA+AGG + chr1_2:10192193-10192212 None:intergenic 25.0%
!!! TAAAGAAACAACCTTTGTTT+TGG + chr1_2:10192251-10192270 None:intergenic 25.0%
!!! ATTTTTTAAGCAATTGAGAG+AGG + chr1_2:10192622-10192641 None:intergenic 25.0%
! GTGTTTATTTAGGCATTAAA+GGG - chr1_2:10192656-10192675 Msa0055240:CDS 25.0%
! TTTACTTGATATCACTTCAT+AGG - chr1_2:10193070-10193089 Msa0055240:CDS 25.0%
!!! GCTATTGTAGTTTTGATATA+TGG - chr1_2:10193097-10193116 Msa0055240:CDS 25.0%
! GTATTTACATATTTATTCCG+AGG - chr1_2:10193188-10193207 Msa0055240:CDS 25.0%
!! ATATAACATTTTTCTTGCCT+CGG + chr1_2:10193208-10193227 None:intergenic 25.0%
! TAAGTCAATGAAGATGTATT+TGG - chr1_2:10193275-10193294 Msa0055240:CDS 25.0%
! CATGGAATTTCAATGTTAAA+TGG - chr1_2:10193853-10193872 Msa0055240:intron 25.0%
! GAATTTCAATGTTAAATGGA+AGG - chr1_2:10193857-10193876 Msa0055240:intron 25.0%
! GTGCATTTATTTCAATGTAT+AGG - chr1_2:10193894-10193913 Msa0055240:intron 25.0%
! AAAATTACTGGTCAATACTA+AGG - chr1_2:10194118-10194137 Msa0055240:CDS 25.0%
! TTTCAATTATCACTTCACAT+TGG - chr1_2:10194718-10194737 Msa0055240:CDS 25.0%
!!! CTTATTGATTTAGTTCTTTC+AGG + chr1_2:10194992-10195011 None:intergenic 25.0%
! ATGAAAGTAATTCCAAAATC+AGG - chr1_2:10195187-10195206 Msa0055240:five_prime_UTR 25.0%
! TCGATGTATGAATTCTTATA+GGG + chr1_2:10195399-10195418 None:intergenic 25.0%
!!! ATATTTACAGCTTTGAAACT+AGG - chr1_2:10195901-10195920 Msa0055240:five_prime_UTR 25.0%
!!! GCTAATATCCTTTTTAAAGA+TGG - chr1_2:10196063-10196082 Msa0055240:five_prime_UTR 25.0%
!!! TTGTTTTGGAACAATCGAAA+TGG + chr1_2:10192237-10192256 None:intergenic 30.0%
TTTCGATTGTTCCAAAACAA+AGG - chr1_2:10192237-10192256 Msa0055240:three_prime_UTR 30.0%
!!! TTTTTGAGGGGTGTTTATTT+AGG - chr1_2:10192646-10192665 Msa0055240:CDS 30.0%
GGTGTTTATTTAGGCATTAA+AGG - chr1_2:10192655-10192674 Msa0055240:CDS 30.0%
ATTAAAGGGTAGCATCATAT+AGG - chr1_2:10192670-10192689 Msa0055240:CDS 30.0%
! ATCATATAGGATTTGAGTTC+AGG - chr1_2:10192683-10192702 Msa0055240:CDS 30.0%
! GTATTTGTTACTTCTTAGAG+TGG - chr1_2:10192741-10192760 Msa0055240:CDS 30.0%
AAACATCACATGGCAAAAAA+TGG + chr1_2:10192919-10192938 None:intergenic 30.0%
ATTGTAAACATGGGTATCAA+TGG - chr1_2:10192983-10193002 Msa0055240:CDS 30.0%
GTCGAGTGTTAAGTTTATTT+GGG - chr1_2:10193119-10193138 Msa0055240:CDS 30.0%
TCGAGTGTTAAGTTTATTTG+GGG - chr1_2:10193120-10193139 Msa0055240:CDS 30.0%
ACGTTATTAACATTGAGCTT+AGG + chr1_2:10193423-10193442 None:intergenic 30.0%
CAGAAAATTTCAAAGATCAC+AGG + chr1_2:10193458-10193477 None:intergenic 30.0%
AGTATTACAACCTTAGATTC+AGG - chr1_2:10193490-10193509 Msa0055240:intron 30.0%
TTAAATGGAAGGGTTAGATT+TGG - chr1_2:10193868-10193887 Msa0055240:intron 30.0%
TAGCTTGATAGAAGTCAAAA+GGG + chr1_2:10193933-10193952 None:intergenic 30.0%
! TTAGCTTGATAGAAGTCAAA+AGG + chr1_2:10193934-10193953 None:intergenic 30.0%
AAATTGTATGACGGTTCAAT+TGG - chr1_2:10193990-10194009 Msa0055240:CDS 30.0%
TATAGCATAGGGAAAATTAC+TGG - chr1_2:10194106-10194125 Msa0055240:CDS 30.0%
GAAGAACATTACATGGTTTA+AGG + chr1_2:10194229-10194248 None:intergenic 30.0%
TCATTGAGAAGAACATTACA+TGG + chr1_2:10194236-10194255 None:intergenic 30.0%
AATCCGTTTCAAATGACATA+GGG + chr1_2:10194397-10194416 None:intergenic 30.0%
!! CATGTTTTGAGTATGATTTG+AGG - chr1_2:10194573-10194592 Msa0055240:intron 30.0%
TCGGCATCAGAAAAAAAAAA+TGG + chr1_2:10194668-10194687 None:intergenic 30.0%
TTATGATCATGACCGATTAT+TGG - chr1_2:10194802-10194821 Msa0055240:CDS 30.0%
ATTCCTGTGATGTATTATCT+TGG - chr1_2:10194920-10194939 Msa0055240:CDS 30.0%
TTCCTGTGATGTATTATCTT+GGG - chr1_2:10194921-10194940 Msa0055240:CDS 30.0%
!!! TTTTGAGATTTGCATGAGTT+GGG + chr1_2:10195289-10195308 None:intergenic 30.0%
! ATTATGGATTTGTTCTAGTG+AGG - chr1_2:10195356-10195375 Msa0055240:five_prime_UTR 30.0%
! TTATGGATTTGTTCTAGTGA+GGG - chr1_2:10195357-10195376 Msa0055240:five_prime_UTR 30.0%
GTCGATGTATGAATTCTTAT+AGG + chr1_2:10195400-10195419 None:intergenic 30.0%
ATTTCATGGATACTACCAAA+TGG - chr1_2:10195703-10195722 Msa0055240:five_prime_UTR 30.0%
TTTCATGGATACTACCAAAT+GGG - chr1_2:10195704-10195723 Msa0055240:five_prime_UTR 30.0%
AAAATCAACAACTTCAACCT+CGG + chr1_2:10195797-10195816 None:intergenic 30.0%
!! TTGATTTTAACACTTGTCCT+GGG - chr1_2:10195809-10195828 Msa0055240:five_prime_UTR 30.0%
!! AGAAAAGTATCAACATGTTG+AGG - chr1_2:10195837-10195856 Msa0055240:five_prime_UTR 30.0%
TTGAAACTAGGCATATTAGT+TGG - chr1_2:10195913-10195932 Msa0055240:five_prime_UTR 30.0%
TAGTTGGAAACAAAGTGAAA+AGG - chr1_2:10195929-10195948 Msa0055240:five_prime_UTR 30.0%
AGCAAAAACCAATATGTTGA+AGG - chr1_2:10195976-10195995 Msa0055240:five_prime_UTR 30.0%
!!! TGTTTTGACCTTCAACATAT+TGG + chr1_2:10195987-10196006 None:intergenic 30.0%
AAAAGGATATTAGCAACTGA+AGG + chr1_2:10196057-10196076 None:intergenic 30.0%
! GTTAAGCACCATCTTTAAAA+AGG + chr1_2:10196074-10196093 None:intergenic 30.0%
ATACAGAGCTAATCCTTTAA+AGG + chr1_2:10196282-10196301 None:intergenic 30.0%
TCTTGGAGAAACAAAGAACT+AGG + chr1_2:10192212-10192231 None:intergenic 35.0%
GAACAATCGAAATGGAATCT+TGG + chr1_2:10192229-10192248 None:intergenic 35.0%
!! GTATCTGTTGACTTTCTTGT+TGG - chr1_2:10192538-10192557 Msa0055240:CDS 35.0%
ATCACATGGCAAAAAATGGA+GGG + chr1_2:10192915-10192934 None:intergenic 35.0%
GATAGTGTAGAAACATCACA+TGG + chr1_2:10192929-10192948 None:intergenic 35.0%
TCTTTCGGGATTGTAAACAT+GGG - chr1_2:10192974-10192993 Msa0055240:CDS 35.0%
GGTCGAGTGTTAAGTTTATT+TGG - chr1_2:10193118-10193137 Msa0055240:CDS 35.0%
AGTGTTAAGTTTATTTGGGG+TGG - chr1_2:10193123-10193142 Msa0055240:CDS 35.0%
TCTAGACATTCCTGAATCTA+AGG + chr1_2:10193503-10193522 None:intergenic 35.0%
GATGTTACATCCAATCAAAG+AGG - chr1_2:10193753-10193772 Msa0055240:intron 35.0%
TTCACATGATCCTCTTTGAT+TGG + chr1_2:10193766-10193785 None:intergenic 35.0%
! TCTCATTACCTGATGTTTTG+AGG - chr1_2:10194045-10194064 Msa0055240:CDS 35.0%
! ATGGTTTAAGGTTGAGAACA+AGG + chr1_2:10194217-10194236 None:intergenic 35.0%
GAATCCGTTTCAAATGACAT+AGG + chr1_2:10194398-10194417 None:intergenic 35.0%
! TGTCATTTGAAACGGATTCA+TGG - chr1_2:10194399-10194418 Msa0055240:intron 35.0%
! GTCATTTGAAACGGATTCAT+GGG - chr1_2:10194400-10194419 Msa0055240:intron 35.0%
! TCATTTGAAACGGATTCATG+GGG - chr1_2:10194401-10194420 Msa0055240:intron 35.0%
ACCAGTCAACATTTCAACAA+CGG + chr1_2:10194438-10194457 None:intergenic 35.0%
! TGTCCTGTTGGTGAAATATA+CGG - chr1_2:10194476-10194495 Msa0055240:CDS 35.0%
ATATTCTGCGCGTCTTTAAA+AGG - chr1_2:10194615-10194634 Msa0055240:intron 35.0%
TCCTGTGAATATTCCAAGAT+TGG - chr1_2:10194839-10194858 Msa0055240:CDS 35.0%
CCTGTGAATATTCCAAGATT+GGG - chr1_2:10194840-10194859 Msa0055240:CDS 35.0%
TGAATATTCCAAGATTGGGT+AGG - chr1_2:10194844-10194863 Msa0055240:CDS 35.0%
AGGAATACAGCTAATCTAGA+AGG + chr1_2:10194906-10194925 None:intergenic 35.0%
TTCCCAAGATAATACATCAC+AGG + chr1_2:10194926-10194945 None:intergenic 35.0%
!!! CTTGGGAAGTGTTTACATTT+TGG - chr1_2:10194938-10194957 Msa0055240:CDS 35.0%
!!! GTTTTGAGATTTGCATGAGT+TGG + chr1_2:10195290-10195309 None:intergenic 35.0%
TTAGAACGTACTGCAGATTA+TGG - chr1_2:10195340-10195359 Msa0055240:five_prime_UTR 35.0%
AGAGCTTCTGTTGGATTTAT+TGG - chr1_2:10195532-10195551 Msa0055240:five_prime_UTR 35.0%
GAGCTTCTGTTGGATTTATT+GGG - chr1_2:10195533-10195552 Msa0055240:five_prime_UTR 35.0%
!! GTTGATTTTAACACTTGTCC+TGG - chr1_2:10195808-10195827 Msa0055240:five_prime_UTR 35.0%
TCATTAGCTAGTGTTTGAAC+TGG - chr1_2:10196133-10196152 Msa0055240:five_prime_UTR 35.0%
! GAAAGTACAGCTGATAGAAT+TGG + chr1_2:10196163-10196182 None:intergenic 35.0%
!! TCTGTTGACTTTCTTGTTGG+TGG - chr1_2:10192541-10192560 Msa0055240:CDS 40.0%
!! TTTCTTGTTGGTGGTTGATG+AGG - chr1_2:10192550-10192569 Msa0055240:CDS 40.0%
!! TTCTTGTTGGTGGTTGATGA+GGG - chr1_2:10192551-10192570 Msa0055240:CDS 40.0%
TTGATGAGGGAACAAGTGAT+TGG - chr1_2:10192564-10192583 Msa0055240:CDS 40.0%
AATCTGCAGTTAAGCGTGTT+TGG - chr1_2:10192833-10192852 Msa0055240:CDS 40.0%
CATCACATGGCAAAAAATGG+AGG + chr1_2:10192916-10192935 None:intergenic 40.0%
AAGAAGGGGGAAATGTCTTT+CGG - chr1_2:10192959-10192978 Msa0055240:CDS 40.0%
GTCTTTCGGGATTGTAAACA+TGG - chr1_2:10192973-10192992 Msa0055240:CDS 40.0%
GTAAACATGGGTATCAATGG+CGG - chr1_2:10192986-10193005 Msa0055240:CDS 40.0%
! TTGTTGTTGCTCAGACAACA+AGG - chr1_2:10193299-10193318 Msa0055240:CDS 40.0%
AGGAATGTCTAGAGAAGTCA+TGG - chr1_2:10193510-10193529 Msa0055240:intron 40.0%
! AAAGGTTCAGGTTCAATCCA+TGG + chr1_2:10193628-10193647 None:intergenic 40.0%
TGCTGAAGTTTCAAAGGTTC+AGG + chr1_2:10193640-10193659 None:intergenic 40.0%
!! ATTCGGTGCTGAAGTTTCAA+AGG + chr1_2:10193646-10193665 None:intergenic 40.0%
! TTGAAACTTCAGCACCGAAT+TGG - chr1_2:10193646-10193665 Msa0055240:intron 40.0%
ACATCTTAGCAGCAACTTCA+TGG + chr1_2:10193738-10193757 None:intergenic 40.0%
! GAATTATGCTTGAAGTGCCA+AGG - chr1_2:10193808-10193827 Msa0055240:intron 40.0%
AGCAAACACTAGAAACTCCT+TGG + chr1_2:10193828-10193847 None:intergenic 40.0%
!! AAGGAGTTTCTAGTGTTTGC+TGG - chr1_2:10193827-10193846 Msa0055240:intron 40.0%
! TCTAGTGTTTGCTGGTTACA+TGG - chr1_2:10193835-10193854 Msa0055240:intron 40.0%
AAGTTGGCTAGACTAAGAGA+TGG - chr1_2:10194017-10194036 Msa0055240:CDS 40.0%
ACACATCACCTCAAAACATC+AGG + chr1_2:10194056-10194075 None:intergenic 40.0%
GGTCAATACTAAGGATGTGT+TGG - chr1_2:10194127-10194146 Msa0055240:CDS 40.0%
! AAGGATGTGTTGGTCGTTAA+TGG - chr1_2:10194137-10194156 Msa0055240:CDS 40.0%
!! ATTCTAGAGCTTCACGCTAA+AGG - chr1_2:10194188-10194207 Msa0055240:CDS 40.0%
!! TTCTAGAGCTTCACGCTAAA+GGG - chr1_2:10194189-10194208 Msa0055240:CDS 40.0%
! TGACAACGATCAAGCGATTT+TGG - chr1_2:10194253-10194272 Msa0055240:CDS 40.0%
! GACAACGATCAAGCGATTTT+GGG - chr1_2:10194254-10194273 Msa0055240:CDS 40.0%
! GGTATTCCCAATCTTTTGCT+TGG - chr1_2:10194284-10194303 Msa0055240:CDS 40.0%
GAAGAGCCAAGCAAAAGATT+GGG + chr1_2:10194293-10194312 None:intergenic 40.0%
TGAAGAGCCAAGCAAAAGAT+TGG + chr1_2:10194294-10194313 None:intergenic 40.0%
TTAGCTCAGATATTGCTCAG+AGG - chr1_2:10194318-10194337 Msa0055240:CDS 40.0%
GCTTGGAAGTCCTAATTACA+TGG - chr1_2:10194340-10194359 Msa0055240:CDS 40.0%
!! TGTTCTGGAGCCATGTAATT+AGG + chr1_2:10194353-10194372 None:intergenic 40.0%
ATTACATGGCTCCAGAACAA+TGG - chr1_2:10194354-10194373 Msa0055240:CDS 40.0%
! AGGCCCTATGTCATTTGAAA+CGG - chr1_2:10194391-10194410 Msa0055240:intron 40.0%
ACCGTTGTTGAAATGTTGAC+TGG - chr1_2:10194434-10194453 Msa0055240:intron 40.0%
GATCCGTATATTTCACCAAC+AGG + chr1_2:10194482-10194501 None:intergenic 40.0%
TATTCTCAATGGGAGAAGGA+AGG + chr1_2:10194544-10194563 None:intergenic 40.0%
AGGATATTCTCAATGGGAGA+AGG + chr1_2:10194548-10194567 None:intergenic 40.0%
TCTCCCATTGAGAATATCCT+TGG - chr1_2:10194548-10194567 Msa0055240:intron 40.0%
GCACCAAGGATATTCTCAAT+GGG + chr1_2:10194554-10194573 None:intergenic 40.0%
TGCACCAAGGATATTCTCAA+TGG + chr1_2:10194555-10194574 None:intergenic 40.0%
CATACTCAAAACATGCACCA+AGG + chr1_2:10194568-10194587 None:intergenic 40.0%
TTTGAGGAATCGACCTTCAA+TGG - chr1_2:10194589-10194608 Msa0055240:intron 40.0%
CGCAGAATATCTACCATTGA+AGG + chr1_2:10194605-10194624 None:intergenic 40.0%
GGTACAGGTTCACCAATAAT+CGG + chr1_2:10194817-10194836 None:intergenic 40.0%
AATATTCACAGGACAGGTAC+AGG + chr1_2:10194832-10194851 None:intergenic 40.0%
TCTTGGAATATTCACAGGAC+AGG + chr1_2:10194838-10194857 None:intergenic 40.0%
CCCAATCTTGGAATATTCAC+AGG + chr1_2:10194843-10194862 None:intergenic 40.0%
TTCAGGTACAGACATTATCC+TGG + chr1_2:10194975-10194994 None:intergenic 40.0%
ATTCATTCTGCCTATGTTGC+AGG - chr1_2:10195113-10195132 Msa0055240:five_prime_UTR 40.0%
CTGAATGAACTGGCTAATGA+TGG - chr1_2:10195139-10195158 Msa0055240:five_prime_UTR 40.0%
AATGAACTGGCTAATGATGG+AGG - chr1_2:10195142-10195161 Msa0055240:five_prime_UTR 40.0%
TCAAAGGATCAACTTCAGGT+GGG - chr1_2:10195238-10195257 Msa0055240:five_prime_UTR 40.0%
CAAAACATGAATGTCCCAGA+CGG - chr1_2:10195304-10195323 Msa0055240:five_prime_UTR 40.0%
TTATAGGGTCATGAATACCG+TGG + chr1_2:10195384-10195403 None:intergenic 40.0%
GGTACGCTTGAAAGATGAAA+AGG - chr1_2:10195459-10195478 Msa0055240:five_prime_UTR 40.0%
!! TGAAAAGGAAAAGCACTCAC+CGG - chr1_2:10195474-10195493 Msa0055240:five_prime_UTR 40.0%
CATTCCATCAATCGCAATGA+CGG - chr1_2:10195508-10195527 Msa0055240:five_prime_UTR 40.0%
AAACCCTTCAGAACTCGAAA+TGG - chr1_2:10195576-10195595 Msa0055240:five_prime_UTR 40.0%
! TCTCTTTTGGCCTAACAAAC+TGG + chr1_2:10195621-10195640 None:intergenic 40.0%
! GGGCTTAACACATTCTCTTT+TGG + chr1_2:10195634-10195653 None:intergenic 40.0%
ATTCGAATGGCGTCGTAAAA+GGG - chr1_2:10195657-10195676 Msa0055240:five_prime_UTR 40.0%
GATACTACCAAATGGGTGTT+TGG - chr1_2:10195711-10195730 Msa0055240:five_prime_UTR 40.0%
TTGACAACCAAACACCCATT+TGG + chr1_2:10195721-10195740 None:intergenic 40.0%
TGTTTGGTTGTCAAGTTTCC+AGG - chr1_2:10195727-10195746 Msa0055240:five_prime_UTR 40.0%
GTTTGGTTGTCAAGTTTCCA+GGG - chr1_2:10195728-10195747 Msa0055240:five_prime_UTR 40.0%
TGGGAATGAATCAAACACCT+TGG - chr1_2:10195762-10195781 Msa0055240:five_prime_UTR 40.0%
! TTTTAACACTTGTCCTGGGA+TGG - chr1_2:10195813-10195832 Msa0055240:five_prime_UTR 40.0%
! TGATACTTTTCTACCATCCC+AGG + chr1_2:10195829-10195848 None:intergenic 40.0%
AACATGTTGAGGATCATCAC+TGG - chr1_2:10195848-10195867 Msa0055240:five_prime_UTR 40.0%
ACATGTTGAGGATCATCACT+GGG - chr1_2:10195849-10195868 Msa0055240:five_prime_UTR 40.0%
! AGACCTGTTCTAGTTGTACT+AGG - chr1_2:10195877-10195896 Msa0055240:five_prime_UTR 40.0%
ATGCCTAGTACAACTAGAAC+AGG + chr1_2:10195883-10195902 None:intergenic 40.0%
! ACAAAGTGAAAAGGTGCAAG+AGG - chr1_2:10195938-10195957 Msa0055240:five_prime_UTR 40.0%
GTCAAAACAACAGTCCTACA+AGG - chr1_2:10195998-10196017 Msa0055240:five_prime_UTR 40.0%
! CCATGGGTTATAATCCTTGT+AGG + chr1_2:10196015-10196034 None:intergenic 40.0%
CCTACAAGGATTATAACCCA+TGG - chr1_2:10196012-10196031 Msa0055240:five_prime_UTR 40.0%
CGCTTAACTGCAGATTCTGA+TGG + chr1_2:10192829-10192848 None:intergenic 45.0%
TGTTTGGCCGAGAGTAATAC+TGG - chr1_2:10192849-10192868 Msa0055240:CDS 45.0%
GTTTGGCCGAGAGTAATACT+GGG - chr1_2:10192850-10192869 Msa0055240:CDS 45.0%
ACCCATCCCAGTATTACTCT+CGG + chr1_2:10192859-10192878 None:intergenic 45.0%
AGAAGGGGGAAATGTCTTTC+GGG - chr1_2:10192960-10192979 Msa0055240:CDS 45.0%
! TCGGAACAGCAGCAGTTTTA+GGG + chr1_2:10193591-10193610 None:intergenic 45.0%
GCAAGCCAAACATCACCAAA+GGG + chr1_2:10193679-10193698 None:intergenic 45.0%
TGCAAGCCAAACATCACCAA+AGG + chr1_2:10193680-10193699 None:intergenic 45.0%
! CGGTTCAATTGGTGACAAGT+TGG - chr1_2:10194001-10194020 Msa0055240:CDS 45.0%
TGGCTAGACTAAGAGATGGA+TGG - chr1_2:10194021-10194040 Msa0055240:CDS 45.0%
! ATGTGTTGGTCGTTAATGGC+AGG - chr1_2:10194141-10194160 Msa0055240:CDS 45.0%
TTGGTCGTTAATGGCAGGTA+TGG - chr1_2:10194146-10194165 Msa0055240:CDS 45.0%
TGGTCGTTAATGGCAGGTAT+GGG - chr1_2:10194147-10194166 Msa0055240:CDS 45.0%
TCAGATATTGCTCAGAGGCT+TGG - chr1_2:10194323-10194342 Msa0055240:CDS 45.0%
TCCAGAACAATGGAAACCAG+AGG - chr1_2:10194364-10194383 Msa0055240:intron 45.0%
! ACCTCTGGTTTCCATTGTTC+TGG + chr1_2:10194368-10194387 None:intergenic 45.0%
! GAAACGGATTCATGGGGATT+CGG - chr1_2:10194407-10194426 Msa0055240:intron 45.0%
! TGTTGACTGGTAGTCAACCT+TGG - chr1_2:10194447-10194466 Msa0055240:intron 45.0%
ACTGGTAGTCAACCTTGGTA+TGG - chr1_2:10194452-10194471 Msa0055240:intron 45.0%
GAAAAGCTGCATATCCCAAG+TGG - chr1_2:10194518-10194537 Msa0055240:CDS 45.0%
ACAACAGACCTACCCAATCT+TGG + chr1_2:10194855-10194874 None:intergenic 45.0%
AGATTGGGTAGGTCTGTTGT+AGG - chr1_2:10194855-10194874 Msa0055240:CDS 45.0%
TGTTGTAGGACTAGAGCTCA+AGG - chr1_2:10194869-10194888 Msa0055240:CDS 45.0%
!!! ATTTTGGCTTCCTCTGATCC+AGG - chr1_2:10194954-10194973 Msa0055240:CDS 45.0%
CAGACATTATCCTGGATCAG+AGG + chr1_2:10194967-10194986 None:intergenic 45.0%
CATTCAGTGACCTGCAACAT+AGG + chr1_2:10195126-10195145 None:intergenic 45.0%
TTGCAGGTCACTGAATGAAC+TGG - chr1_2:10195129-10195148 Msa0055240:five_prime_UTR 45.0%
! TAGTCAGTGCTGCCTGATTT+TGG + chr1_2:10195202-10195221 None:intergenic 45.0%
! ATCCTTTGAGAGGAACCACT+CGG + chr1_2:10195227-10195246 None:intergenic 45.0%
! CCTGAAGTTGATCCTTTGAG+AGG + chr1_2:10195237-10195256 None:intergenic 45.0%
CCTCTCAAAGGATCAACTTC+AGG - chr1_2:10195234-10195253 Msa0055240:five_prime_UTR 45.0%
CTCAAAGGATCAACTTCAGG+TGG - chr1_2:10195237-10195256 Msa0055240:five_prime_UTR 45.0%
! TGAGATTTGCATGAGTTGGG+AGG + chr1_2:10195286-10195305 None:intergenic 45.0%
TTTGTTCTAGTGAGGGTCCA+CGG - chr1_2:10195364-10195383 Msa0055240:five_prime_UTR 45.0%
ATGGAATGTAGAATCCCCAC+CGG + chr1_2:10195496-10195515 None:intergenic 45.0%
TCTACCGTCATTGCGATTGA+TGG + chr1_2:10195515-10195534 None:intergenic 45.0%
AATGACGGTAGAGCTTCTGT+TGG - chr1_2:10195523-10195542 Msa0055240:five_prime_UTR 45.0%
TTATTGGGCTGCAAACTCTC+TGG - chr1_2:10195548-10195567 Msa0055240:five_prime_UTR 45.0%
!! CTGCCATTTCGAGTTCTGAA+GGG + chr1_2:10195582-10195601 None:intergenic 45.0%
!! TCTGCCATTTCGAGTTCTGA+AGG + chr1_2:10195583-10195602 None:intergenic 45.0%
AATGGCAGAATCATTCTGCG+TGG - chr1_2:10195594-10195613 Msa0055240:five_prime_UTR 45.0%
ATGGCAGAATCATTCTGCGT+GGG - chr1_2:10195595-10195614 Msa0055240:five_prime_UTR 45.0%
! TGTTAAGCCCTCGATTCGAA+TGG - chr1_2:10195644-10195663 Msa0055240:five_prime_UTR 45.0%
GATTCGAATGGCGTCGTAAA+AGG - chr1_2:10195656-10195675 Msa0055240:five_prime_UTR 45.0%
TTCGAATGGCGTCGTAAAAG+GGG - chr1_2:10195658-10195677 Msa0055240:five_prime_UTR 45.0%
TGAAATCCTACCAGTAGCAG+AGG + chr1_2:10195689-10195708 None:intergenic 45.0%
CTGCTACTGGTAGGATTTCA+TGG - chr1_2:10195689-10195708 Msa0055240:five_prime_UTR 45.0%
! TTTCCAGGGATGGTGAGTTT+TGG - chr1_2:10195742-10195761 Msa0055240:five_prime_UTR 45.0%
! TTCCAGGGATGGTGAGTTTT+GGG - chr1_2:10195743-10195762 Msa0055240:five_prime_UTR 45.0%
AACTTCAACCTCGGAAGGAT+CGG + chr1_2:10195788-10195807 None:intergenic 45.0%
TCAACAACTTCAACCTCGGA+AGG + chr1_2:10195793-10195812 None:intergenic 45.0%
TAACCCATGGCAACACAACA+TGG - chr1_2:10196025-10196044 Msa0055240:five_prime_UTR 45.0%
AACCCATGGCAACACAACAT+GGG - chr1_2:10196026-10196045 Msa0055240:five_prime_UTR 45.0%
GCCGAGAGTAATACTGGGAT+GGG - chr1_2:10192855-10192874 Msa0055240:CDS 50.0%
GAGGGATGAAGTGCAACACA+AGG + chr1_2:10192897-10192916 None:intergenic 50.0%
!!! AGCAGCAGTTTTAGGGACGT+CGG + chr1_2:10193584-10193603 None:intergenic 50.0%
! GTCGGAACAGCAGCAGTTTT+AGG + chr1_2:10193592-10193611 None:intergenic 50.0%
!! AATCCATGGACTAGCGCGAT+TGG + chr1_2:10193614-10193633 None:intergenic 50.0%
CAAAGGGTCCTCGACCAATT+CGG + chr1_2:10193663-10193682 None:intergenic 50.0%
!! GAGGACCCTTTGGTGATGTT+TGG - chr1_2:10193671-10193690 Msa0055240:intron 50.0%
! TATGGGATCGATCTGGCTCA+AGG - chr1_2:10194164-10194183 Msa0055240:CDS 50.0%
!! CAAGCGATTTTGGGAGACGT+TGG - chr1_2:10194263-10194282 Msa0055240:CDS 50.0%
CAATGGAAACCAGAGGTCAG+AGG - chr1_2:10194371-10194390 Msa0055240:intron 50.0%
CCAACAGGACATCCATACCA+AGG + chr1_2:10194467-10194486 None:intergenic 50.0%
CCTTGGTATGGATGTCCTGT+TGG - chr1_2:10194464-10194483 Msa0055240:intron 50.0%
AAGCTGTTTGTGCACGAGCA+TGG - chr1_2:10195016-10195035 Msa0055240:CDS 50.0%
! GAACTGGCTAATGATGGAGG+AGG - chr1_2:10195145-10195164 Msa0055240:five_prime_UTR 50.0%
! TGGCTAATGATGGAGGAGGA+TGG - chr1_2:10195149-10195168 Msa0055240:five_prime_UTR 50.0%
GGAGGAGGATGGAGATATCA+AGG - chr1_2:10195160-10195179 Msa0055240:five_prime_UTR 50.0%
TCAACTTCAGGTGGGTGACA+TGG - chr1_2:10195246-10195265 Msa0055240:five_prime_UTR 50.0%
AGTTGGGAGGCTTTCTGGAT+CGG + chr1_2:10195273-10195292 None:intergenic 50.0%
ACTCTTGAACGCGTCACGAA+TGG - chr1_2:10195418-10195437 Msa0055240:five_prime_UTR 50.0%
!! AAAGGAAAAGCACTCACCGG+TGG - chr1_2:10195477-10195496 Msa0055240:five_prime_UTR 50.0%
!! AAGGAAAAGCACTCACCGGT+GGG - chr1_2:10195478-10195497 Msa0055240:five_prime_UTR 50.0%
TACGACGCCATTCGAATCGA+GGG + chr1_2:10195654-10195673 None:intergenic 50.0%
TTACGACGCCATTCGAATCG+AGG + chr1_2:10195655-10195674 None:intergenic 50.0%
AATGGCGTCGTAAAAGGGGA+GGG - chr1_2:10195662-10195681 Msa0055240:five_prime_UTR 50.0%
GGTTGTCAAGTTTCCAGGGA+TGG - chr1_2:10195732-10195751 Msa0055240:five_prime_UTR 50.0%
TTCCCAAAACTCACCATCCC+TGG + chr1_2:10195748-10195767 None:intergenic 50.0%
ACCCATGGCAACACAACATG+GGG - chr1_2:10196027-10196046 Msa0055240:five_prime_UTR 50.0%
GGCCGAGAGTAATACTGGGA+TGG - chr1_2:10192854-10192873 Msa0055240:CDS 55.0%
CAACACAAGGACTTCCCAGG+AGG + chr1_2:10192884-10192903 None:intergenic 55.0%
GTGCAACACAAGGACTTCCC+AGG + chr1_2:10192887-10192906 None:intergenic 55.0%
!! CATGGACTAGCGCGATTGGT+CGG + chr1_2:10193610-10193629 None:intergenic 55.0%
! CTTCAGCACCGAATTGGTCG+AGG - chr1_2:10193652-10193671 Msa0055240:intron 55.0%
CGAATTGGTCGAGGACCCTT+TGG - chr1_2:10193661-10193680 Msa0055240:intron 55.0%
TGGCAGGTATGGGATCGATC+TGG - chr1_2:10194157-10194176 Msa0055240:CDS 55.0%
TGGGAGAAGGAAGGCCACTT+GGG + chr1_2:10194535-10194554 None:intergenic 55.0%
ATGGGAGAAGGAAGGCCACT+TGG + chr1_2:10194536-10194555 None:intergenic 55.0%
CACCGAGTGGTTCCTCTCAA+AGG - chr1_2:10195222-10195241 Msa0055240:five_prime_UTR 55.0%
! GCATGAGTTGGGAGGCTTTC+TGG + chr1_2:10195278-10195297 None:intergenic 55.0%
AGCCAACGACAGTTCCGTCT+GGG + chr1_2:10195321-10195340 None:intergenic 55.0%
AAGCCAACGACAGTTCCGTC+TGG + chr1_2:10195322-10195341 None:intergenic 55.0%
!! AGGAAAAGCACTCACCGGTG+GGG - chr1_2:10195479-10195498 Msa0055240:five_prime_UTR 55.0%
! GGGCTGCAAACTCTCTGGAA+TGG - chr1_2:10195553-10195572 Msa0055240:five_prime_UTR 55.0%
! TCTGCGTGGGCCAGTTTGTT+AGG - chr1_2:10195608-10195627 Msa0055240:five_prime_UTR 55.0%
GAATGGCGTCGTAAAAGGGG+AGG - chr1_2:10195661-10195680 Msa0055240:five_prime_UTR 55.0%
ATGGCGTCGTAAAAGGGGAG+GGG - chr1_2:10195663-10195682 Msa0055240:five_prime_UTR 55.0%
CCCCCATGTTGTGTTGCCAT+GGG + chr1_2:10196031-10196050 None:intergenic 55.0%
CCCATGGCAACACAACATGG+GGG - chr1_2:10196028-10196047 Msa0055240:five_prime_UTR 55.0%
CCATGGCAACACAACATGGG+GGG - chr1_2:10196029-10196048 Msa0055240:five_prime_UTR 55.0%
TACTGGGATGGGTGACCTCC+TGG - chr1_2:10192866-10192885 Msa0055240:CDS 60.0%
ACTGGGATGGGTGACCTCCT+GGG - chr1_2:10192867-10192886 Msa0055240:CDS 60.0%
CGACCAATCGCGCTAGTCCA+TGG - chr1_2:10193608-10193627 Msa0055240:intron 60.0%
GACATAGGGCCTCTGACCTC+TGG + chr1_2:10194383-10194402 None:intergenic 60.0%
!! GCAGCACTGACTACACCGAG+TGG - chr1_2:10195209-10195228 Msa0055240:five_prime_UTR 60.0%
GTCCCAGACGGAACTGTCGT+TGG - chr1_2:10195316-10195335 Msa0055240:five_prime_UTR 60.0%
TGAACGCGTCACGAATGGCC+TGG - chr1_2:10195423-10195442 Msa0055240:five_prime_UTR 60.0%
ATGGCCTGGCAGCTGGTGAT+TGG - chr1_2:10195437-10195456 Msa0055240:five_prime_UTR 60.0%
TGGCCTGGCAGCTGGTGATT+GGG - chr1_2:10195438-10195457 Msa0055240:five_prime_UTR 60.0%
GTACCCAATCACCAGCTGCC+AGG + chr1_2:10195444-10195463 None:intergenic 60.0%
AACCTCGGAAGGATCGGCCA+AGG + chr1_2:10195782-10195801 None:intergenic 60.0%
CCCCCCATGTTGTGTTGCCA+TGG + chr1_2:10196032-10196051 None:intergenic 60.0%
GTCACGAATGGCCTGGCAGC+TGG - chr1_2:10195430-10195449 Msa0055240:five_prime_UTR 65.0%
GAGGGGCCTCTGCTACTGGT+AGG - chr1_2:10195680-10195699 Msa0055240:five_prime_UTR 65.0%
CACCTTGGCCGATCCTTCCG+AGG - chr1_2:10195777-10195796 Msa0055240:five_prime_UTR 65.0%
AGGGGAGGGGCCTCTGCTAC+TGG - chr1_2:10195676-10195695 Msa0055240:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 10192182 10196356 10192182 ID=Msa0055240;Name=Msa0055240
chr1_2 mRNA 10192182 10196356 10192182 ID=Msa0055240-mRNA-1;Parent=Msa0055240;Name=Msa0055240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=1305|1|1|1|1|1|4|264|638
chr1_2 exon 10192182 10193403 10192182 ID=Msa0055240-mRNA-1:exon:3828;Parent=Msa0055240-mRNA-1
chr1_2 exon 10193902 10194375 10193902 ID=Msa0055240-mRNA-1:exon:3827;Parent=Msa0055240-mRNA-1
chr1_2 exon 10194472 10194563 10194472 ID=Msa0055240-mRNA-1:exon:3826;Parent=Msa0055240-mRNA-1
chr1_2 exon 10194659 10196356 10194659 ID=Msa0055240-mRNA-1:exon:3825;Parent=Msa0055240-mRNA-1
chr1_2 five_prime_UTR 10195052 10196356 10195052 ID=Msa0055240-mRNA-1:five_prime_utr;Parent=Msa0055240-mRNA-1
chr1_2 CDS 10194659 10195051 10194659 ID=Msa0055240-mRNA-1:cds;Parent=Msa0055240-mRNA-1
chr1_2 CDS 10194472 10194563 10194472 ID=Msa0055240-mRNA-1:cds;Parent=Msa0055240-mRNA-1
chr1_2 CDS 10193902 10194375 10193902 ID=Msa0055240-mRNA-1:cds;Parent=Msa0055240-mRNA-1
chr1_2 CDS 10192446 10193403 10192446 ID=Msa0055240-mRNA-1:cds;Parent=Msa0055240-mRNA-1
chr1_2 three_prime_UTR 10192182 10192445 10192182 ID=Msa0055240-mRNA-1:three_prime_utr;Parent=Msa0055240-mRNA-1
Gene Sequence

>Msa0055240

ATGAGTATTACAACCTTAGATTCAGGAATGTCTAGAGAAGTCATGGCTTCTTCATCAGCTGCTTCTTTTGATTATGAGATTTTGGATAAAGATACCGACGTCCCTAAAACTGCTGCTGTTCCGACCAATCGCGCTAGTCCATGGATTGAACCTGAACCTTTGAAACTTCAGCACCGAATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGAAGATTATGATGAGCACCATGAAGTTGCTGCTAAGATGTTACATCCAATCAAAGAGGATCATGTGAAGATTGTATTGAAGAAATTCAATGAATTATGCTTGAAGTGCCAAGGAGTTTCTAGTGTTTGCTGGTTACATGGAATTTCAATGTTAAATGGAAGGATCTGCATCATTATGAAATTGTATGACGGTTCAATTGGTGACAAGTTGGCTAGACTAAGAGATGGATGGATCTCATTACCTGATGTTTTGAGGTATGGGATCGATCTGGCTCAAGGCATTCTAGAGCTTCACGCTAAAGGGATCCTTGTTCTCAACCTTAAACCATGTAATGTTCTTCTCAATGACAACGATCAAGCGATTTTGGGAGACGTTGGTATTCCCAATCTTTTGCTTGGCTCTTCATTCGTTAGCTCAGATATTGCTCAGAGGCTTGGAAGTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAGGTCAGAGGCCCTATGTCATTTGAAACGGATTCATGGGGATTCGGATGCACCGTTGTTGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTGGTGAAATATACGGATCAGTTGTCGAAAAGCATGAAAAGCTGCATATCCCAAGTGGCCTTCCTTCTCCCATTGAGAATATCCTTGGTGCATGTTTTGAGTATGATTTGAGGAATCGACCTTCAATGGTAGATATTCTGCGCGTCTTTAAAAGGTCACTGAATGAACTGGCTAATGATGGAGGAGGATGGAGATATCAAGGAAACATGAAAGTAATTCCAAAATCAGGCAGCACTGACTACACCGAGTGGTTCCTCTCAAAGGATCAACTTCAGGTGGGTGACATGGTCCGATCCAGAAAGCCTCCCAACTCATGCAAATCTCAAAACATGAATGTCCCAGACGGAACTGTCGTTGGCTTAGAACGTACTGCAGATTATGGATTTGTTCTAGTGAGGGTCCACGGTATTCATGACCCTATAAGAATTCATACATCGACTCTTGAACGCGTCACGAATGGCCTGGCAGCTGGTGATTGGGTACGCTTGAAAGATGAAAAGGAAAAGCACTCACCGGTGGGGATTCTACATTCCATCAATCGCAATGACGGTAGAGCTTCTGTTGGATTTATTGGGCTGCAAACTCTCTGGAATGGAAACCCTTCAGAACTCGAAATGGCAGAATCATTCTGCGTGGGCCAGTTTGTTAGGCCAAAAGAGAATGTGTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCTGCTACTGGTAGGATTTCATGGATACTACCAAATGGGTGTTTGGTTGTCAAGTTTCCAGGGATGGTGAGTTTTGGGAATGAATCAAACACCTTGGCCGATCCTTCCGAGGTTGAAGTTGTTGATTTTAACACTTGTCCTGGGATGGTAGAAAAGTATCAACATGTTGAGGATCATCACTGGGCTGTAAGACCTGTTCTAGTTGTACTAGGCATATTTACAGCTTTGAAACTAGGCATATTAGTTGGAAACAAAGTGAAAAGGTGCAAGAGGTTCAATGCAAAAGAAAGCAAAAACCAATATGTTGAAGGTCAAAACAACAGTCCTACAAGGATTATAACCCATGGCAACACAACATGGGGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA
Protein sequence

>Msa0055240

MSITTLDSGMSREVMASSSAASFDYEILDKDTDVPKTAAVPTNRASPWIEPEPLKLQHRIGRGPFGDVWLATLHQSTEDYDEHHEVAAKMLHPIKEDHVKIVLKKFNELCLKCQGVSSVCWLHGISMLNGRICIIMKLYDGSIGDKLARLRDGWISLPDVLRYGIDLAQGILELHAKGILVLNLKPCNVLLNDNDQAILGDVGIPNLLLGSSFVSSDIAQRLGSPNYMAPEQWKPEVRGPMSFETDSWGFGCTVVEMLTGSQPWYGCPVGEIYGSVVEKHEKLHIPSGLPSPIENILGACFEYDLRNRPSMVDILRVFKRSLNELANDGGGWRYQGNMKVIPKSGSTDYTEWFLSKDQLQVGDMVRSRKPPNSCKSQNMNVPDGTVVGLERTADYGFVLVRVHGIHDPIRIHTSTLERVTNGLAAGDWVRLKDEKEKHSPVGILHSINRNDGRASVGFIGLQTLWNGNPSELEMAESFCVGQFVRPKENVLSPRFEWRRKRGGASATGRISWILPNGCLVVKFPGMVSFGNESNTLADPSEVEVVDFNTCPGMVEKYQHVEDHHWAVRPVLVVLGIFTALKLGILVGNKVKRCKRFNAKESKNQYVEGQNNSPTRIITHGNTTWGVPSVANILFKDGA*