AlfalfaGEDB | Msa0007390

M. sativa cultivar zhongmu-4 / Msa0007390

KEGG: K10144
GO: GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
PFAM: PF13639.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007390	XP_024630999.1	83.444	302	20	4	5	276	1	302	3.61e-176	498

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007390	sp\|Q5JL96\|ZFP34_ORYSJ	66.822	214	58	2	71	273	90	301	1.66e-104	309

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007390	Msa0055840	0.923803	1.639225e-89	-8.615850e-47
Msa0007390	Msa0055960	0.867053	1.816147e-65	-8.615850e-47
Msa0007390	Msa0055970	0.953726	1.452488e-111	-8.615850e-47
Msa0007390	Msa0153480	0.929713	4.677835e-93	-8.615850e-47
Msa0007390	Msa0301260	0.804852	1.770636e-49	-8.615850e-47
Msa0007390	Msa0438480	0.807379	5.203534e-50	-8.615850e-47
Msa0007390	Msa0512360	0.802345	5.861729e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007390	MtrunA17_Chr1g0148421	83.444	302	20	4	5	276	1	302	3.32e-180	498
Msa0007390	MtrunA17_Chr1g0169881	66.340	306	64	4	5	276	1	301	1.24e-143	405
Msa0007390	MtrunA17_Chr3g0138621	66.019	309	68	4	5	276	1	309	2.17e-143	405
Msa0007390	MtrunA17_Chr7g0264931	65.438	217	64	1	71	276	53	269	3.76e-109	317
Msa0007390	MtrunA17_Chr4g0028121	62.802	207	66	1	80	275	98	304	6.53e-99	292
Msa0007390	MtrunA17_Chr2g0286331	54.680	203	81	1	81	272	56	258	4.70e-79	240
Msa0007390	MtrunA17_Chr8g0391161	41.111	180	98	5	99	275	1061	1235	6.02e-39	144
Msa0007390	MtrunA17_Chr6g0484171	41.243	177	96	5	99	272	1051	1222	2.39e-36	137
Msa0007390	MtrunA17_Chr4g0059881	39.560	182	103	5	94	272	1092	1269	1.37e-35	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0007390	AT5G25560.4	74.886	219	44	1	69	276	85	303	2.79e-123	354
Msa0007390	AT5G25560.1	74.886	219	44	1	69	276	90	308	4.12e-123	353
Msa0007390	AT5G25560.5	74.886	219	44	1	69	276	90	308	4.12e-123	353
Msa0007390	AT5G25560.6	74.886	219	44	1	69	276	90	308	4.12e-123	353
Msa0007390	AT5G25560.2	74.886	219	44	1	69	276	90	308	4.12e-123	353
Msa0007390	AT5G25560.3	71.616	229	44	1	69	276	90	318	1.17e-121	350
Msa0007390	AT5G22920.1	61.009	218	74	1	69	275	54	271	9.62e-102	299
Msa0007390	AT5G18650.1	58.333	204	74	1	80	272	55	258	5.34e-83	250
Msa0007390	AT5G22920.2	59.239	184	64	1	69	241	54	237	5.74e-81	244
Msa0007390	AT3G62970.1	52.153	209	88	2	76	273	68	275	1.57e-72	224

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Find 73 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAACGGACATTAG+AGG	0.451363	1_1:-10619135	None:intergenic
AAATTCCACAGCCATTACAA+TGG	0.701862	1_1:-10617311	None:intergenic
AAGAAACATATGACCGAAGA+AGG	0.522486	1_1:+10612823	Msa0007390:CDS
AAGCAGCAGTACCATTGTAA+TGG	0.540337	1_1:+10617300	Msa0007390:CDS
AAGGATTCCGGATTTGATTT+TGG	0.261066	1_1:-10612856	None:intergenic
AATCTGTCGTTTGGTGGATT+CGG	0.310339	1_1:+10619426	Msa0007390:three_prime_UTR
AATGTTACCTCAAAACAAAC+AGG	0.388889	1_1:-10618204	None:intergenic
ACAAATAAAATGAGATGAAA+TGG	0.346674	1_1:-10619259	None:intergenic
ACATGACACTAATTATGTAT+TGG	0.417742	1_1:+10619217	Msa0007390:three_prime_UTR
ACCGGAGAAGATGCCGAATC+AGG	0.343514	1_1:+10613036	Msa0007390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCCTCCAAAATCAAATC+CGG	+	chr1_1:10612849-10612868	Msa0007390:CDS	30.0%
TCAAAAATCTCATTGCAACA+GGG	-	chr1_1:10613065-10613084	None:intergenic	30.0%
ATCAAAAATCTCATTGCAAC+AGG	-	chr1_1:10613066-10613085	None:intergenic	30.0%
CACATAAAACCAATGAATGA+TGG	-	chr1_1:10613241-10613260	None:intergenic	30.0%
AAATTAACCAAGTGAATGCA+TGG	+	chr1_1:10613560-10613579	Msa0007390:intron	30.0%
AAGCACATAATATATGGCAT+AGG	+	chr1_1:10613629-10613648	Msa0007390:intron	30.0%
ACTTCAATTATTTCGGTCTT+CGG	+	chr1_1:10614093-10614112	Msa0007390:intron	30.0%
AATTGTATGGATAGATTGCA+AGG	-	chr1_1:10614222-10614241	None:intergenic	30.0%
GAAATTTGATTGCACATGTT+TGG	+	chr1_1:10614299-10614318	Msa0007390:intron	30.0%
TCCCTAAAATCATCTTTCAT+TGG	+	chr1_1:10614396-10614415	Msa0007390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	10612615	10619588	10612615	ID=Msa0007390;Name=Msa0007390
chr1_1	mRNA	10612615	10619588	10612615	ID=Msa0007390-mRNA-1;Parent=Msa0007390;Name=Msa0007390-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0.6\|0.72\|1\|0.6\|0.63\|11\|374\|276
chr1_1	exon	10612615	10612618	10612615	ID=Msa0007390-mRNA-1:exon:3875;Parent=Msa0007390-mRNA-1
chr1_1	exon	10612761	10612895	10612761	ID=Msa0007390-mRNA-1:exon:3876;Parent=Msa0007390-mRNA-1
chr1_1	exon	10613025	10613095	10613025	ID=Msa0007390-mRNA-1:exon:3877;Parent=Msa0007390-mRNA-1
chr1_1	exon	10616436	10616495	10616436	ID=Msa0007390-mRNA-1:exon:3878;Parent=Msa0007390-mRNA-1
chr1_1	exon	10617063	10617140	10617063	ID=Msa0007390-mRNA-1:exon:3879;Parent=Msa0007390-mRNA-1
chr1_1	exon	10617294	10617337	10617294	ID=Msa0007390-mRNA-1:exon:3880;Parent=Msa0007390-mRNA-1
chr1_1	exon	10617985	10618025	10617985	ID=Msa0007390-mRNA-1:exon:3881;Parent=Msa0007390-mRNA-1
chr1_1	exon	10618136	10618218	10618136	ID=Msa0007390-mRNA-1:exon:3882;Parent=Msa0007390-mRNA-1
chr1_1	exon	10618444	10618535	10618444	ID=Msa0007390-mRNA-1:exon:3883;Parent=Msa0007390-mRNA-1
chr1_1	exon	10618621	10618732	10618621	ID=Msa0007390-mRNA-1:exon:3884;Parent=Msa0007390-mRNA-1
chr1_1	exon	10619104	10619588	10619104	ID=Msa0007390-mRNA-1:exon:3885;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10612615	10612618	10612615	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10612761	10612895	10612761	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10613025	10613095	10613025	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10616436	10616495	10616436	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10617063	10617140	10617063	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10617294	10617337	10617294	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10617985	10618025	10617985	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10618136	10618218	10618136	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10618444	10618535	10618444	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10618621	10618732	10618621	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	CDS	10619104	10619214	10619104	ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1
chr1_1	three_prime_UTR	10619215	10619588	10619215	ID=Msa0007390-mRNA-1:three_prime_utr;Parent=Msa0007390-mRNA-1

Gene Sequence

>Msa0007390

ATGCCTTGTATCATGGGCGAGGTGGCAGTGTTGCATTCTGAGCCTCTGCAATTTGAATGCAATGACAAGAAACATATGACCGAAGAAGGCGTTTATCCTCCAAAATCAAATCCGGAATCCTTGCCTGGAGAAGAATCAAATGCCAACACTACCGGAGAAGATGCCGAATCAGGGGCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTAATGATATCAACGTAGATTATAAGCATAGACACGACATGCCTCGACACCAAGTCAAACAGGCGCAGCAAAATTGCGTTAATTGTGGTGTTTGCATGGGCAAGTACTTTTGTGATACATGCAAGCTCTACGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGCGGACGAGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAGAGACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTTCCAGTTCACATGCCCTCTCTGTTCAAAGTCGGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACACCAATGCCTGAGCCATATCAAAACAAAATGGTTTGGATCCTGTGCAATGATTGTGGAAAAACCTCTAATGTCCGTTTCCATTTTGTAGCGCAAAAATGCCTCAACTGCAATTCCTACAACACACGACAAACAAGAGGCTGA

Protein sequence

>Msa0007390

MPCIMGEVAVLHSEPLQFECNDKKHMTEEGVYPPKSNPESLPGEESNANTTGEDAESGAPVAMRFLIAAINDINVDYKHRHDMPRHQVKQAQQNCVNCGVCMGKYFCDTCKLYDDDISKQQYHCNGCGICRTGGRENFFHCNKCGCCYSTLLRDSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHFQFTCPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGKTSNVRFHFVAQKCLNCNSYNTRQTRG*