Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007390 | XP_024630999.1 | 83.444 | 302 | 20 | 4 | 5 | 276 | 1 | 302 | 3.61e-176 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007390 | sp|Q5JL96|ZFP34_ORYSJ | 66.822 | 214 | 58 | 2 | 71 | 273 | 90 | 301 | 1.66e-104 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007390 | Msa0055840 | 0.923803 | 1.639225e-89 | -8.615850e-47 |
| Msa0007390 | Msa0055960 | 0.867053 | 1.816147e-65 | -8.615850e-47 |
| Msa0007390 | Msa0055970 | 0.953726 | 1.452488e-111 | -8.615850e-47 |
| Msa0007390 | Msa0153480 | 0.929713 | 4.677835e-93 | -8.615850e-47 |
| Msa0007390 | Msa0301260 | 0.804852 | 1.770636e-49 | -8.615850e-47 |
| Msa0007390 | Msa0438480 | 0.807379 | 5.203534e-50 | -8.615850e-47 |
| Msa0007390 | Msa0512360 | 0.802345 | 5.861729e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007390 | MtrunA17_Chr1g0148421 | 83.444 | 302 | 20 | 4 | 5 | 276 | 1 | 302 | 3.32e-180 | 498 |
| Msa0007390 | MtrunA17_Chr1g0169881 | 66.340 | 306 | 64 | 4 | 5 | 276 | 1 | 301 | 1.24e-143 | 405 |
| Msa0007390 | MtrunA17_Chr3g0138621 | 66.019 | 309 | 68 | 4 | 5 | 276 | 1 | 309 | 2.17e-143 | 405 |
| Msa0007390 | MtrunA17_Chr7g0264931 | 65.438 | 217 | 64 | 1 | 71 | 276 | 53 | 269 | 3.76e-109 | 317 |
| Msa0007390 | MtrunA17_Chr4g0028121 | 62.802 | 207 | 66 | 1 | 80 | 275 | 98 | 304 | 6.53e-99 | 292 |
| Msa0007390 | MtrunA17_Chr2g0286331 | 54.680 | 203 | 81 | 1 | 81 | 272 | 56 | 258 | 4.70e-79 | 240 |
| Msa0007390 | MtrunA17_Chr8g0391161 | 41.111 | 180 | 98 | 5 | 99 | 275 | 1061 | 1235 | 6.02e-39 | 144 |
| Msa0007390 | MtrunA17_Chr6g0484171 | 41.243 | 177 | 96 | 5 | 99 | 272 | 1051 | 1222 | 2.39e-36 | 137 |
| Msa0007390 | MtrunA17_Chr4g0059881 | 39.560 | 182 | 103 | 5 | 94 | 272 | 1092 | 1269 | 1.37e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007390 | AT5G25560.4 | 74.886 | 219 | 44 | 1 | 69 | 276 | 85 | 303 | 2.79e-123 | 354 |
| Msa0007390 | AT5G25560.1 | 74.886 | 219 | 44 | 1 | 69 | 276 | 90 | 308 | 4.12e-123 | 353 |
| Msa0007390 | AT5G25560.5 | 74.886 | 219 | 44 | 1 | 69 | 276 | 90 | 308 | 4.12e-123 | 353 |
| Msa0007390 | AT5G25560.6 | 74.886 | 219 | 44 | 1 | 69 | 276 | 90 | 308 | 4.12e-123 | 353 |
| Msa0007390 | AT5G25560.2 | 74.886 | 219 | 44 | 1 | 69 | 276 | 90 | 308 | 4.12e-123 | 353 |
| Msa0007390 | AT5G25560.3 | 71.616 | 229 | 44 | 1 | 69 | 276 | 90 | 318 | 1.17e-121 | 350 |
| Msa0007390 | AT5G22920.1 | 61.009 | 218 | 74 | 1 | 69 | 275 | 54 | 271 | 9.62e-102 | 299 |
| Msa0007390 | AT5G18650.1 | 58.333 | 204 | 74 | 1 | 80 | 272 | 55 | 258 | 5.34e-83 | 250 |
| Msa0007390 | AT5G22920.2 | 59.239 | 184 | 64 | 1 | 69 | 241 | 54 | 237 | 5.74e-81 | 244 |
| Msa0007390 | AT3G62970.1 | 52.153 | 209 | 88 | 2 | 76 | 273 | 68 | 275 | 1.57e-72 | 224 |
| Msa0007390 | AT3G62970.2 | 52.023 | 173 | 72 | 1 | 76 | 237 | 68 | 240 | 6.77e-60 | 191 |
| Msa0007390 | AT3G62970.3 | 51.534 | 163 | 68 | 1 | 76 | 227 | 68 | 230 | 3.25e-55 | 178 |
| Msa0007390 | AT1G74770.1 | 45.109 | 184 | 91 | 6 | 94 | 272 | 1079 | 1257 | 3.43e-43 | 157 |
| Msa0007390 | AT1G18910.1 | 44.828 | 174 | 88 | 5 | 102 | 272 | 1084 | 1252 | 4.48e-42 | 154 |
| Msa0007390 | AT3G18290.1 | 41.436 | 181 | 98 | 5 | 99 | 276 | 1068 | 1243 | 5.84e-39 | 145 |
| Msa0007390 | AT1G74770.2 | 43.571 | 140 | 69 | 6 | 94 | 228 | 1079 | 1213 | 1.90e-26 | 108 |
Find 73 sgRNAs with CRISPR-Local
Find 445 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAAAGGTTTGGGAGAAAT+TGG | 0.205837 | 1_1:+10618660 | Msa0007390:CDS |
| AAGGATTCCGGATTTGATTT+TGG | 0.261066 | 1_1:-10612856 | None:intergenic |
| TCGTTTGGTGGATTCGGGTT+AGG | 0.283988 | 1_1:+10619432 | Msa0007390:three_prime_UTR |
| AATCTGTCGTTTGGTGGATT+CGG | 0.310339 | 1_1:+10619426 | Msa0007390:three_prime_UTR |
| ATCTGTCGTTTGGTGGATTC+GGG | 0.320288 | 1_1:+10619427 | Msa0007390:three_prime_UTR |
| TCTTCTCCAGGCAAGGATTC+CGG | 0.334834 | 1_1:-10612868 | None:intergenic |
| ACCGGAGAAGATGCCGAATC+AGG | 0.343514 | 1_1:+10613036 | Msa0007390:CDS |
| ACAAATAAAATGAGATGAAA+TGG | 0.346674 | 1_1:-10619259 | None:intergenic |
| TATGTATTGGTTCAACGAAA+TGG | 0.348744 | 1_1:+10619230 | Msa0007390:three_prime_UTR |
| CGTTTGGTGGATTCGGGTTA+GGG | 0.351612 | 1_1:+10619433 | Msa0007390:three_prime_UTR |
| TCTTGTTTGTCGTGTGTTGT+AGG | 0.365452 | 1_1:-10619186 | None:intergenic |
| TGCAACAGGGGCCCCTGATT+CGG | 0.381881 | 1_1:-10613049 | None:intergenic |
| AATGTTACCTCAAAACAAAC+AGG | 0.388889 | 1_1:-10618204 | None:intergenic |
| CTGTGATATGTCAAAGGTTT+GGG | 0.397365 | 1_1:+10618651 | Msa0007390:CDS |
| TGAGCCATATCAAAACAAAA+TGG | 0.400566 | 1_1:+10618711 | Msa0007390:CDS |
| TACTTGATGCTGTTCTCTCT+TGG | 0.403847 | 1_1:+10619296 | Msa0007390:three_prime_UTR |
| ACATGACACTAATTATGTAT+TGG | 0.417742 | 1_1:+10619217 | Msa0007390:three_prime_UTR |
| CCCTGATTCGGCATCTTCTC+CGG | 0.435085 | 1_1:-10613037 | None:intergenic |
| TATGTACTTGATTCTTCTCC+AGG | 0.439979 | 1_1:-10612880 | None:intergenic |
| AGCTGCTGTAATCTGTCGTT+TGG | 0.443690 | 1_1:+10619417 | Msa0007390:three_prime_UTR |
| TGGAGGATAAACGCCTTCTT+CGG | 0.450394 | 1_1:-10612836 | None:intergenic |
| AAAATGGAAACGGACATTAG+AGG | 0.451363 | 1_1:-10619135 | None:intergenic |
| GCCTCGACACCAAGTCAAAC+AGG | 0.452342 | 1_1:+10616474 | Msa0007390:CDS |
| CGTTAATTGTGGTGTTTGCA+TGG | 0.461112 | 1_1:+10617077 | Msa0007390:CDS |
| TTAGGTTGGGGAGTAAGAGT+TGG | 0.467999 | 1_1:+10619391 | Msa0007390:three_prime_UTR |
| TCAAATCCGGAATCCTTGCC+TGG | 0.473220 | 1_1:+10612862 | Msa0007390:CDS |
| CTACAAGGATGCTGTACACT+TGG | 0.475732 | 1_1:+10619319 | Msa0007390:three_prime_UTR |
| TCTGTGATATGTCAAAGGTT+TGG | 0.478142 | 1_1:+10618650 | Msa0007390:CDS |
| TTTGAGGATAGCTTGTATCA+TGG | 0.478756 | 1_1:+10612750 | Msa0007390:intron |
| GCTGTTCTCTCTTGGCTACA+AGG | 0.492755 | 1_1:+10619304 | Msa0007390:three_prime_UTR |
| TTGAGGATAGCTTGTATCAT+GGG | 0.493617 | 1_1:+10612751 | Msa0007390:intron |
| GTAATGGCTGTGGAATTTGC+AGG | 0.495528 | 1_1:+10617316 | Msa0007390:CDS |
| CCGGAGAAGATGCCGAATCA+GGG | 0.497414 | 1_1:+10613037 | Msa0007390:CDS |
| TTATCCTCCAAAATCAAATC+CGG | 0.499360 | 1_1:+10612849 | Msa0007390:CDS |
| TGCTGTAATCTGTCGTTTGG+TGG | 0.500552 | 1_1:+10619420 | Msa0007390:three_prime_UTR |
| TTTGCAGATGCCAACACTAC+CGG | 0.517868 | 1_1:+10613018 | Msa0007390:intron |
| GACAGTCACCCCTGTGTGGA+AGG | 0.518086 | 1_1:+10618162 | Msa0007390:CDS |
| AAGAAACATATGACCGAAGA+AGG | 0.522486 | 1_1:+10612823 | Msa0007390:CDS |
| CAGCAAAATTGCGTTAATTG+TGG | 0.522657 | 1_1:+10617066 | Msa0007390:CDS |
| TTTGCGCTACAAAATGGAAA+CGG | 0.527808 | 1_1:-10619145 | None:intergenic |
| GGCATCTTCTCCGGTAGTGT+TGG | 0.528892 | 1_1:-10613028 | None:intergenic |
| TTTATTTGTTATGAAGGCAG+TGG | 0.530197 | 1_1:+10619273 | Msa0007390:three_prime_UTR |
| AAGCAGCAGTACCATTGTAA+TGG | 0.540337 | 1_1:+10617300 | Msa0007390:CDS |
| CAGTACCATTGTAATGGCTG+TGG | 0.543474 | 1_1:+10617306 | Msa0007390:CDS |
| ACTTGATTCTTCTCCAGGCA+AGG | 0.546025 | 1_1:-10612875 | None:intergenic |
| TTCAACGCGCTTAGACACAT+TGG | 0.548093 | 1_1:+10619345 | Msa0007390:three_prime_UTR |
| TGCATTGCTCCTTCCACACA+GGG | 0.551718 | 1_1:-10618171 | None:intergenic |
| TTCTTCCATTGTAATAAGTG+TGG | 0.560145 | 1_1:+10618004 | Msa0007390:CDS |
| ATGCATTGCTCCTTCCACAC+AGG | 0.561591 | 1_1:-10618172 | None:intergenic |
| ACCTGTTTGACTTGGTGTCG+AGG | 0.565593 | 1_1:-10616475 | None:intergenic |
| TGGATCCTGTGCAATGATTG+TGG | 0.566578 | 1_1:+10619107 | Msa0007390:CDS |
| ACTTACCACACTTATTACAA+TGG | 0.572247 | 1_1:-10618009 | None:intergenic |
| GTTAATTGTGGTGTTTGCAT+GGG | 0.576398 | 1_1:+10617078 | Msa0007390:CDS |
| GTCGGTCTGTGATATGTCAA+AGG | 0.586948 | 1_1:+10618645 | Msa0007390:CDS |
| ATAAGAATACCTGTTTGACT+TGG | 0.598715 | 1_1:-10616483 | None:intergenic |
| ATGCCCTCTCTGTTCAAAGT+CGG | 0.600364 | 1_1:+10618627 | Msa0007390:CDS |
| GATAGCTTGTATCATGGGCG+AGG | 0.602796 | 1_1:+10612756 | Msa0007390:intron |
| AGCTTGTATCATGGGCGAGG+TGG | 0.609164 | 1_1:+10612759 | Msa0007390:intron |
| TTATGGATTGTATGTCCGCA+CGG | 0.613243 | 1_1:-10618480 | None:intergenic |
| TACAACACACGACAAACAAG+AGG | 0.613863 | 1_1:+10619188 | Msa0007390:CDS |
| TCATTGCATTCAAATTGCAG+AGG | 0.622420 | 1_1:-10612799 | None:intergenic |
| GGTTTGGGAGAAATTGGACA+TGG | 0.628537 | 1_1:+10618666 | Msa0007390:CDS |
| TTGCCTCATTGTGACAATGG+CGG | 0.629473 | 1_1:-10613088 | None:intergenic |
| AGACCGACTTTGAACAGAGA+GGG | 0.629552 | 1_1:-10618630 | None:intergenic |
| CGGAGAAGATGCCGAATCAG+GGG | 0.631506 | 1_1:+10613038 | Msa0007390:CDS |
| TGTTGTAGGAATTGCAGTTG+AGG | 0.661197 | 1_1:-10619172 | None:intergenic |
| AGAAAATGAATGAAAGCACA+AGG | 0.672882 | 1_1:-10619563 | None:intergenic |
| GAGAGACAGTCACCCCTGTG+TGG | 0.695181 | 1_1:+10618158 | Msa0007390:CDS |
| AAATTCCACAGCCATTACAA+TGG | 0.701862 | 1_1:-10617311 | None:intergenic |
| ATGTTACCTCAAAACAAACA+GGG | 0.725565 | 1_1:-10618203 | None:intergenic |
| CAGACCGACTTTGAACAGAG+AGG | 0.734899 | 1_1:-10618631 | None:intergenic |
| GCATTGCTCCTTCCACACAG+GGG | 0.763708 | 1_1:-10618170 | None:intergenic |
| GATGTCATTGTTATGCCGTG+CGG | 0.812135 | 1_1:+10618465 | Msa0007390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAATATGAAATAAGA+TGG | - | chr1_1:10613193-10613212 | None:intergenic | 10.0% |
| !! | TTTATATTTATTTAGATGAA+AGG | - | chr1_1:10613437-10613456 | None:intergenic | 10.0% |
| !! | TATTTATTTAATGATGTATA+CGG | - | chr1_1:10613465-10613484 | None:intergenic | 10.0% |
| !!! | TATTAACTTGTAAATTTTTA+TGG | - | chr1_1:10614019-10614038 | None:intergenic | 10.0% |
| !!! | AAATTTTTTTATTAGCATTA+CGG | - | chr1_1:10616580-10616599 | None:intergenic | 10.0% |
| !! | GATATAGAATTTATTTATAA+AGG | + | chr1_1:10616694-10616713 | Msa0007390:intron | 10.0% |
| !!! | CATGTAAATTTTATAATAAA+GGG | - | chr1_1:10617692-10617711 | None:intergenic | 10.0% |
| !!! | ACATGTAAATTTTATAATAA+AGG | - | chr1_1:10617693-10617712 | None:intergenic | 10.0% |
| !!! | AGTTGTAAATATTTTAATTA+GGG | + | chr1_1:10618332-10618351 | Msa0007390:intron | 10.0% |
| !!! | GTATAATAGTTTAAGATATT+CGG | - | chr1_1:10613871-10613890 | None:intergenic | 15.0% |
| !! | TAAGATTTATGTCTTATATA+AGG | - | chr1_1:10614696-10614715 | None:intergenic | 15.0% |
| !! | ATATAAGACATAAATCTTAA+AGG | + | chr1_1:10614697-10614716 | Msa0007390:intron | 15.0% |
| !! | TATAAGACATAAATCTTAAA+GGG | + | chr1_1:10614698-10614717 | Msa0007390:intron | 15.0% |
| !!! | AAAAAAAATAACAGCTTTTA+AGG | + | chr1_1:10615892-10615911 | Msa0007390:intron | 15.0% |
| !! | AGTGAAAATTTAATTGTAAT+TGG | + | chr1_1:10616216-10616235 | Msa0007390:intron | 15.0% |
| !! | TAAAAAAATTTGATGTATAC+AGG | + | chr1_1:10616589-10616608 | Msa0007390:intron | 15.0% |
| !! | ATAAAATTTACATGTCATAT+TGG | + | chr1_1:10617698-10617717 | Msa0007390:intron | 15.0% |
| !!! | GAGTTGTAAATATTTTAATT+AGG | + | chr1_1:10618331-10618350 | Msa0007390:intron | 15.0% |
| !! | TAATTAGGGTTAATTTAAAT+TGG | + | chr1_1:10618346-10618365 | Msa0007390:intron | 15.0% |
| !!! | TTAATTTTTGGCAAATTAAA+AGG | + | chr1_1:10618865-10618884 | Msa0007390:intron | 15.0% |
| !!! | ATATAACTTGTAGAAGTTTT+AGG | + | chr1_1:10612653-10612672 | Msa0007390:intron | 20.0% |
| !!! | AAGTCTAATTTTATGGAAAA+AGG | - | chr1_1:10612996-10613015 | None:intergenic | 20.0% |
| !!! | GCAAATAAAGTCTAATTTTA+TGG | - | chr1_1:10613003-10613022 | None:intergenic | 20.0% |
| !! | TATTTATTTAGATGAAAGGA+GGG | - | chr1_1:10613433-10613452 | None:intergenic | 20.0% |
| !! | ATATTTATTTAGATGAAAGG+AGG | - | chr1_1:10613434-10613453 | None:intergenic | 20.0% |
| !! | TCTTATAACTGTATATTATG+TGG | - | chr1_1:10613606-10613625 | None:intergenic | 20.0% |
| !! | TTGTGTTAAATTACAAGAAA+AGG | + | chr1_1:10613654-10613673 | Msa0007390:intron | 20.0% |
| !!! | AAGAATTAGTTCTAATTAGT+AGG | - | chr1_1:10613730-10613749 | None:intergenic | 20.0% |
| !! | GAGATTATTCACAATTTATT+TGG | - | chr1_1:10613794-10613813 | None:intergenic | 20.0% |
| !! | TAATTGAAGTTAATCAGAAA+AGG | - | chr1_1:10614083-10614102 | None:intergenic | 20.0% |
| !! | CTGATTAACTTCAATTATTT+CGG | + | chr1_1:10614086-10614105 | Msa0007390:intron | 20.0% |
| !! | AAAAATAAGTCTGCTTATAA+AGG | + | chr1_1:10614535-10614554 | Msa0007390:intron | 20.0% |
| !! | ACAAAATACATAAAGATATG+CGG | + | chr1_1:10614584-10614603 | Msa0007390:intron | 20.0% |
| !! | ATAAGACATAAATCTTAAAG+GGG | + | chr1_1:10614699-10614718 | Msa0007390:intron | 20.0% |
| !!! | ATTTTTTGGTCTTTCAAAAA+TGG | - | chr1_1:10615606-10615625 | None:intergenic | 20.0% |
| !!! | CTTTTCAAATCTCTATTTTT+TGG | - | chr1_1:10615620-10615639 | None:intergenic | 20.0% |
| !!! | GTTTTTCTTGTTCATTTTAT+TGG | + | chr1_1:10616041-10616060 | Msa0007390:intron | 20.0% |
| !! | ATTTGTGAATGTTCAAATTA+AGG | - | chr1_1:10616522-10616541 | None:intergenic | 20.0% |
| !! | CATGCATAAAGAAAATAATA+TGG | + | chr1_1:10616812-10616831 | Msa0007390:intron | 20.0% |
| !!! | GATTTTTACTACTTAATTTC+AGG | + | chr1_1:10617041-10617060 | Msa0007390:intron | 20.0% |
| !!! | TTTTCAGTCTACTTTATTAT+AGG | + | chr1_1:10617440-10617459 | Msa0007390:intron | 20.0% |
| !! | CTTGTTCAAAGTTTATTAAT+TGG | - | chr1_1:10618251-10618270 | None:intergenic | 20.0% |
| !! | ACTGATATAATAACTATTAC+AGG | - | chr1_1:10618304-10618323 | None:intergenic | 20.0% |
| !! | ACAAATAAAATGAGATGAAA+TGG | - | chr1_1:10619262-10619281 | None:intergenic | 20.0% |
| !!! | TCTCATTTTATTTGTTATGA+AGG | + | chr1_1:10619267-10619286 | Msa0007390:three_prime_UTR | 20.0% |
| ! | TATCAACTAGATCTAGAAAT+AGG | - | chr1_1:10612724-10612743 | None:intergenic | 25.0% |
| !!! | CTAGTTGATAATCTTATTTG+AGG | + | chr1_1:10612734-10612753 | Msa0007390:intron | 25.0% |
| !! | TGATTGTTGCTTAAATGATA+TGG | + | chr1_1:10613165-10613184 | Msa0007390:intron | 25.0% |
| ! | TGAGTATCATAAAATGAAGT+TGG | + | chr1_1:10613354-10613373 | Msa0007390:intron | 25.0% |
| ! | AGATGTAAGCACATAATATA+TGG | + | chr1_1:10613623-10613642 | Msa0007390:intron | 25.0% |
| ! | TAATTAGTAGGTGAATTAGT+AGG | - | chr1_1:10613718-10613737 | None:intergenic | 25.0% |
| ! | CAACATATATGATTATAGCT+AGG | - | chr1_1:10613978-10613997 | None:intergenic | 25.0% |
| ! | TCCATACAATTATCTTTCAT+TGG | + | chr1_1:10614231-10614250 | Msa0007390:intron | 25.0% |
| ! | TCCAATGAAAGATAATTGTA+TGG | - | chr1_1:10614235-10614254 | None:intergenic | 25.0% |
| ! | TGGAAATTAGTTCATGAATT+TGG | + | chr1_1:10614251-10614270 | Msa0007390:intron | 25.0% |
| !! | TCCAATGAAAGATGATTTTA+GGG | - | chr1_1:10614400-10614419 | None:intergenic | 25.0% |
| !! | TTCCAATGAAAGATGATTTT+AGG | - | chr1_1:10614401-10614420 | None:intergenic | 25.0% |
| ! | TAAGACATAAATCTTAAAGG+GGG | + | chr1_1:10614700-10614719 | Msa0007390:intron | 25.0% |
| !!! | AATTTGGGATGACTAATTTT+TGG | - | chr1_1:10614998-10615017 | None:intergenic | 25.0% |
| !!! | AAAATAACAGCTTTTAAGGA+AGG | + | chr1_1:10615896-10615915 | Msa0007390:intron | 25.0% |
| ! | ACACTAACAACTACTAAATT+AGG | + | chr1_1:10616190-10616209 | Msa0007390:intron | 25.0% |
| !! | TAATTGGTTTCTATTTGTCT+TGG | + | chr1_1:10616232-10616251 | Msa0007390:intron | 25.0% |
| !! | TTTGGCAGTATTCTTAATTT+TGG | + | chr1_1:10616380-10616399 | Msa0007390:intron | 25.0% |
| !! | TTGGCAGTATTCTTAATTTT+GGG | + | chr1_1:10616381-10616400 | Msa0007390:intron | 25.0% |
| !! | AACAGGTATTCTTATTTACT+TGG | + | chr1_1:10616491-10616510 | Msa0007390:intron | 25.0% |
| !! | ACAGGTATTCTTATTTACTT+GGG | + | chr1_1:10616492-10616511 | Msa0007390:intron | 25.0% |
| !!! | TTTTTTATTAGCATTACGGA+GGG | - | chr1_1:10616576-10616595 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTAGCATTACGG+AGG | - | chr1_1:10616577-10616596 | None:intergenic | 25.0% |
| ! | GTATCAACTACAATGATATA+TGG | + | chr1_1:10616966-10616985 | Msa0007390:intron | 25.0% |
| !! | GAAAAAGGAATTTTATTCCT+AGG | - | chr1_1:10617156-10617175 | None:intergenic | 25.0% |
| ! | AGATATCTGCATCATTTAAA+AGG | - | chr1_1:10617280-10617299 | None:intergenic | 25.0% |
| ! | TAACAAATTGCATCATTATG+AGG | + | chr1_1:10617374-10617393 | Msa0007390:intron | 25.0% |
| ! | AACAAATTGCATCATTATGA+GGG | + | chr1_1:10617375-10617394 | Msa0007390:intron | 25.0% |
| !! | AAAAGGGAGAAATTTTGTAT+TGG | - | chr1_1:10617572-10617591 | None:intergenic | 25.0% |
| !! | AATACAAAATTTCTCCCTTT+TGG | + | chr1_1:10617571-10617590 | Msa0007390:intron | 25.0% |
| ! | ACATGTTAAAGATTCCAAAA+GGG | - | chr1_1:10617588-10617607 | None:intergenic | 25.0% |
| !! | TCCAAATGAGAAACTATTTT+GGG | - | chr1_1:10617738-10617757 | None:intergenic | 25.0% |
| !!! | TTAGCTTTATCCTGATTTTA+GGG | + | chr1_1:10617781-10617800 | Msa0007390:intron | 25.0% |
| ! | AAAATTGTACAAGAACCATA+TGG | - | chr1_1:10617834-10617853 | None:intergenic | 25.0% |
| !!! | TACTTTACTTTTTATTGCCT+TGG | + | chr1_1:10617914-10617933 | Msa0007390:intron | 25.0% |
| !!! | ATAACTGCTTTTTAAATTGC+TGG | + | chr1_1:10618384-10618403 | Msa0007390:intron | 25.0% |
| !!! | CTTGTTTTTAATTGTGTATC+AGG | + | chr1_1:10618599-10618618 | Msa0007390:intron | 25.0% |
| ! | ACATGACACTAATTATGTAT+TGG | + | chr1_1:10619217-10619236 | Msa0007390:three_prime_UTR | 25.0% |
| !!! | TGATTGTTCAGTTTGATTTT+AGG | + | chr1_1:10619373-10619392 | Msa0007390:three_prime_UTR | 25.0% |
| TTATCCTCCAAAATCAAATC+CGG | + | chr1_1:10612849-10612868 | Msa0007390:CDS | 30.0% | |
| ! | ATCAAGTACATATGATTTGC+AGG | + | chr1_1:10612891-10612910 | Msa0007390:intron | 30.0% |
| TCAAAAATCTCATTGCAACA+GGG | - | chr1_1:10613065-10613084 | None:intergenic | 30.0% | |
| ATCAAAAATCTCATTGCAAC+AGG | - | chr1_1:10613066-10613085 | None:intergenic | 30.0% | |
| CACATAAAACCAATGAATGA+TGG | - | chr1_1:10613241-10613260 | None:intergenic | 30.0% | |
| !!! | CATCATTCATTGGTTTTATG+TGG | + | chr1_1:10613239-10613258 | Msa0007390:intron | 30.0% |
| AAATTAACCAAGTGAATGCA+TGG | + | chr1_1:10613560-10613579 | Msa0007390:intron | 30.0% | |
| AAGCACATAATATATGGCAT+AGG | + | chr1_1:10613629-10613648 | Msa0007390:intron | 30.0% | |
| ACTTCAATTATTTCGGTCTT+CGG | + | chr1_1:10614093-10614112 | Msa0007390:intron | 30.0% | |
| AATTGTATGGATAGATTGCA+AGG | - | chr1_1:10614222-10614241 | None:intergenic | 30.0% | |
| GAAATTTGATTGCACATGTT+TGG | + | chr1_1:10614299-10614318 | Msa0007390:intron | 30.0% | |
| !! | GATTTTAGGGATAAATTGCA+AGG | - | chr1_1:10614387-10614406 | None:intergenic | 30.0% |
| TCCCTAAAATCATCTTTCAT+TGG | + | chr1_1:10614396-10614415 | Msa0007390:intron | 30.0% | |
| TAATCATTACGAAATGACAG+TGG | + | chr1_1:10614496-10614515 | Msa0007390:intron | 30.0% | |
| ACTGAAACAACAAAACAACA+AGG | + | chr1_1:10614620-10614639 | Msa0007390:intron | 30.0% | |
| ATCGATCAAATTCATTCTCA+TGG | - | chr1_1:10614858-10614877 | None:intergenic | 30.0% | |
| ATGAGAATGAATTTGATCGA+TGG | + | chr1_1:10614857-10614876 | Msa0007390:intron | 30.0% | |
| AAATTAGTCATCCCAAATTG+TGG | + | chr1_1:10614999-10615018 | Msa0007390:intron | 30.0% | |
| TCAAAAAACAGGAAGACAAA+AGG | - | chr1_1:10615241-10615260 | None:intergenic | 30.0% | |
| !! | CAAGAGGGGTATTTATTATT+TGG | + | chr1_1:10615681-10615700 | Msa0007390:intron | 30.0% |
| GCTCTTAAGGAAAATATACA+CGG | + | chr1_1:10615783-10615802 | Msa0007390:intron | 30.0% | |
| ! | AAGGTATACACCATTTGTTA+AGG | + | chr1_1:10615915-10615934 | Msa0007390:intron | 30.0% |
| ! | TATACACCATTTGTTAAGGT+CGG | + | chr1_1:10615919-10615938 | Msa0007390:intron | 30.0% |
| CAGAATATGTTGTCAAATAG+CGG | - | chr1_1:10616102-10616121 | None:intergenic | 30.0% | |
| ! | TTGTTAGTGTTGTTAAGTAG+CGG | - | chr1_1:10616180-10616199 | None:intergenic | 30.0% |
| TATTTGTCTTGGCATTGTTA+AGG | + | chr1_1:10616243-10616262 | Msa0007390:intron | 30.0% | |
| GATGAAAATCGGAAAAACAA+AGG | - | chr1_1:10616273-10616292 | None:intergenic | 30.0% | |
| GATCACTTCATGATGAAAAT+CGG | - | chr1_1:10616284-10616303 | None:intergenic | 30.0% | |
| ! | TCACTTTCACTTTAGAAGTA+TGG | + | chr1_1:10616324-10616343 | Msa0007390:intron | 30.0% |
| ! | TGGCAGTATTCTTAATTTTG+GGG | + | chr1_1:10616382-10616401 | Msa0007390:intron | 30.0% |
| ATAAGAATACCTGTTTGACT+TGG | - | chr1_1:10616486-10616505 | None:intergenic | 30.0% | |
| ATAAAGGTCGATGTAACTAT+CGG | + | chr1_1:10616710-10616729 | Msa0007390:intron | 30.0% | |
| TTGTTAAGCTTATTACTGTC+AGG | + | chr1_1:10616840-10616859 | Msa0007390:intron | 30.0% | |
| ! | TCCTTTTTCTTTTGATGTTG+TGG | + | chr1_1:10617167-10617186 | Msa0007390:intron | 30.0% |
| ACCACAACATCAAAAGAAAA+AGG | - | chr1_1:10617171-10617190 | None:intergenic | 30.0% | |
| TTTGTTAACAAATGCCCTTA+GGG | - | chr1_1:10617482-10617501 | None:intergenic | 30.0% | |
| CACATGTTAAAGATTCCAAA+AGG | - | chr1_1:10617589-10617608 | None:intergenic | 30.0% | |
| AGGATTCCAAAAAGAGAAAA+GGG | - | chr1_1:10617636-10617655 | None:intergenic | 30.0% | |
| AAGGATTCCAAAAAGAGAAA+AGG | - | chr1_1:10617637-10617656 | None:intergenic | 30.0% | |
| !! | AAATGAGAAACTATTTTGGG+TGG | - | chr1_1:10617735-10617754 | None:intergenic | 30.0% |
| ACCCAAAATAGTTTCTCATT+TGG | + | chr1_1:10617734-10617753 | Msa0007390:intron | 30.0% | |
| ! | GTCCAAATGAGAAACTATTT+TGG | - | chr1_1:10617739-10617758 | None:intergenic | 30.0% |
| !!! | CTTAGCTTTATCCTGATTTT+AGG | + | chr1_1:10617780-10617799 | Msa0007390:intron | 30.0% |
| AATGAAAATGCAATGCCATA+TGG | + | chr1_1:10617816-10617835 | Msa0007390:intron | 30.0% | |
| TTCTTCCATTGTAATAAGTG+TGG | + | chr1_1:10618004-10618023 | Msa0007390:CDS | 30.0% | |
| ACTTACCACACTTATTACAA+TGG | - | chr1_1:10618012-10618031 | None:intergenic | 30.0% | |
| AAGAACTAAGCAAAAAACAC+AGG | - | chr1_1:10618050-10618069 | None:intergenic | 30.0% | |
| TAGTTCTTTAAGTAGCAATG+CGG | + | chr1_1:10618062-10618081 | Msa0007390:intron | 30.0% | |
| TAGTACTTATTTGACATCCA+TGG | + | chr1_1:10618098-10618117 | Msa0007390:intron | 30.0% | |
| !!! | TTGACATCCATGGTTTTTTT+TGG | + | chr1_1:10618108-10618127 | Msa0007390:intron | 30.0% |
| ATGTTACCTCAAAACAAACA+GGG | - | chr1_1:10618206-10618225 | None:intergenic | 30.0% | |
| AATGTTACCTCAAAACAAAC+AGG | - | chr1_1:10618207-10618226 | None:intergenic | 30.0% | |
| GGTAACATTTACAACTTTCA+TGG | + | chr1_1:10618218-10618237 | Msa0007390:intron | 30.0% | |
| AATACTGCATTCATCAATGT+TGG | - | chr1_1:10618428-10618447 | None:intergenic | 30.0% | |
| ! | TTTCATTCAGACAGCTTTTA+TGG | - | chr1_1:10618500-10618519 | None:intergenic | 30.0% |
| AGATGAAGAAAAAGTAGACT+TGG | - | chr1_1:10618557-10618576 | None:intergenic | 30.0% | |
| !!! | ATTTTGTTTTGATATGGCTC+AGG | - | chr1_1:10618712-10618731 | None:intergenic | 30.0% |
| TGAGCCATATCAAAACAAAA+TGG | + | chr1_1:10618711-10618730 | Msa0007390:CDS | 30.0% | |
| !!! | CTGACCATTTTGTTTTGATA+TGG | - | chr1_1:10618718-10618737 | None:intergenic | 30.0% |
| !!! | TCCGTTGGTTTCTTAATTTT+TGG | + | chr1_1:10618853-10618872 | Msa0007390:intron | 30.0% |
| GCCAAAAATTAAGAAACCAA+CGG | - | chr1_1:10618857-10618876 | None:intergenic | 30.0% | |
| !!! | AGACTTGCGGTTTATTTTAT+TGG | + | chr1_1:10619036-10619055 | Msa0007390:intron | 30.0% |
| TTATTGGCATCTTAAATCCA+AGG | + | chr1_1:10619052-10619071 | Msa0007390:intron | 30.0% | |
| !! | TATGTATTGGTTCAACGAAA+TGG | + | chr1_1:10619230-10619249 | Msa0007390:three_prime_UTR | 30.0% |
| !! | TTTATTTGTTATGAAGGCAG+TGG | + | chr1_1:10619273-10619292 | Msa0007390:three_prime_UTR | 30.0% |
| !! | TGTTCAGTTTGATTTTAGGT+TGG | + | chr1_1:10619377-10619396 | Msa0007390:three_prime_UTR | 30.0% |
| !!! | GTTCAGTTTGATTTTAGGTT+GGG | + | chr1_1:10619378-10619397 | Msa0007390:three_prime_UTR | 30.0% |
| !!! | TTCAGTTTGATTTTAGGTTG+GGG | + | chr1_1:10619379-10619398 | Msa0007390:three_prime_UTR | 30.0% |
| ! | AGAAAATGAATGAAAGCACA+AGG | - | chr1_1:10619566-10619585 | None:intergenic | 30.0% |
| ! | CTAAATTTGTTCGTACATGC+AGG | + | chr1_1:10612683-10612702 | Msa0007390:intron | 35.0% |
| AGAAATAGGCAGTAAGCTTA+AGG | - | chr1_1:10612710-10612729 | None:intergenic | 35.0% | |
| ! | TTTGAGGATAGCTTGTATCA+TGG | + | chr1_1:10612750-10612769 | Msa0007390:intron | 35.0% |
| ! | TTGAGGATAGCTTGTATCAT+GGG | + | chr1_1:10612751-10612770 | Msa0007390:intron | 35.0% |
| TCATTGCATTCAAATTGCAG+AGG | - | chr1_1:10612802-10612821 | None:intergenic | 35.0% | |
| AAGAAACATATGACCGAAGA+AGG | + | chr1_1:10612823-10612842 | Msa0007390:CDS | 35.0% | |
| !! | AAGGATTCCGGATTTGATTT+TGG | - | chr1_1:10612859-10612878 | None:intergenic | 35.0% |
| TATGTACTTGATTCTTCTCC+AGG | - | chr1_1:10612883-10612902 | None:intergenic | 35.0% | |
| ! | TACATATGATTTGCAGGAGA+AGG | + | chr1_1:10612897-10612916 | Msa0007390:intron | 35.0% |
| ! | ACATATGATTTGCAGGAGAA+GGG | + | chr1_1:10612898-10612917 | Msa0007390:intron | 35.0% |
| AGAAGGGATATATGGAACAT+GGG | + | chr1_1:10612914-10612933 | Msa0007390:intron | 35.0% | |
| CAAAAATCTCATTGCAACAG+GGG | - | chr1_1:10613064-10613083 | None:intergenic | 35.0% | |
| ! | ATGAATGATGGTGACAATTG+AGG | - | chr1_1:10613229-10613248 | None:intergenic | 35.0% |
| CAATTGTCACCATCATTCAT+TGG | + | chr1_1:10613229-10613248 | Msa0007390:intron | 35.0% | |
| TAGTTCAAGACTCGTATACA+TGG | - | chr1_1:10613691-10613710 | None:intergenic | 35.0% | |
| CAACTCATGTGAGAATGAAA+CGG | + | chr1_1:10613907-10613926 | Msa0007390:intron | 35.0% | |
| ! | AAAGTATCACTTTCACCTTG+TGG | - | chr1_1:10614155-10614174 | None:intergenic | 35.0% |
| ! | GAAATTTGCTTGCACATGTT+TGG | + | chr1_1:10614464-10614483 | Msa0007390:intron | 35.0% |
| ! | GACATGACATCATGTTTTCA+TGG | - | chr1_1:10614663-10614682 | None:intergenic | 35.0% |
| TTATTATCTCGTGATCCTAC+TGG | - | chr1_1:10614828-10614847 | None:intergenic | 35.0% | |
| GTAGGATCACGAGATAATAA+TGG | + | chr1_1:10614828-10614847 | Msa0007390:intron | 35.0% | |
| TCCACAAAAGTCAAACACTT+CGG | - | chr1_1:10614946-10614965 | None:intergenic | 35.0% | |
| !! | GTGTTTGACTTTTGTGGAAT+TGG | + | chr1_1:10614948-10614967 | Msa0007390:intron | 35.0% |
| !!! | ATGACTAATTTTTGGCGTGT+AGG | - | chr1_1:10614990-10615009 | None:intergenic | 35.0% |
| AAGTTAGCACTACGGAAATT+TGG | + | chr1_1:10615128-10615147 | Msa0007390:intron | 35.0% | |
| AAATTTGGATGCCCTTGATA+GGG | + | chr1_1:10615143-10615162 | Msa0007390:intron | 35.0% | |
| TAGGACTTGAAAATGGATGA+GGG | + | chr1_1:10615168-10615187 | Msa0007390:intron | 35.0% | |
| AAGAGATAGATTTACTCCGA+AGG | - | chr1_1:10615217-10615236 | None:intergenic | 35.0% | |
| CAGGAAATTCTCTACTTATC+AGG | - | chr1_1:10615306-10615325 | None:intergenic | 35.0% | |
| ACTGTGAAAACAAACTTGTG+TGG | + | chr1_1:10615644-10615663 | Msa0007390:intron | 35.0% | |
| !! | GTTTCATGATTTGCTCAAGA+GGG | + | chr1_1:10615666-10615685 | Msa0007390:intron | 35.0% |
| !! | TTTCATGATTTGCTCAAGAG+GGG | + | chr1_1:10615667-10615686 | Msa0007390:intron | 35.0% |
| TCCTTGTATAGCACATTCAA+CGG | - | chr1_1:10615714-10615733 | None:intergenic | 35.0% | |
| TTCTGCTAAATAGCACATTG+TGG | + | chr1_1:10616117-10616136 | Msa0007390:intron | 35.0% | |
| TTAAGCTTATTACTGTCAGG+AGG | + | chr1_1:10616843-10616862 | Msa0007390:intron | 35.0% | |
| AGCATAAGATCTATTGCTCT+AGG | - | chr1_1:10616902-10616921 | None:intergenic | 35.0% | |
| CAGCAAAATTGCGTTAATTG+TGG | + | chr1_1:10617066-10617085 | Msa0007390:CDS | 35.0% | |
| GTTAATTGTGGTGTTTGCAT+GGG | + | chr1_1:10617078-10617097 | Msa0007390:CDS | 35.0% | |
| !! | ATGATGTGAGTATTGATCCT+AGG | + | chr1_1:10617136-10617155 | Msa0007390:intron | 35.0% |
| AAATTCCACAGCCATTACAA+TGG | - | chr1_1:10617314-10617333 | None:intergenic | 35.0% | |
| AATTGCATCATTATGAGGGA+TGG | + | chr1_1:10617379-10617398 | Msa0007390:intron | 35.0% | |
| ! | GTTTGTTAACAAATGCCCTT+AGG | - | chr1_1:10617483-10617502 | None:intergenic | 35.0% |
| AATCTTTAACATGTGCCCTT+AGG | + | chr1_1:10617594-10617613 | Msa0007390:intron | 35.0% | |
| ATCTTTAACATGTGCCCTTA+GGG | + | chr1_1:10617595-10617614 | Msa0007390:intron | 35.0% | |
| AATCCTTAACATGCAACCTT+AGG | + | chr1_1:10617650-10617669 | Msa0007390:intron | 35.0% | |
| ATCCTTAACATGCAACCTTA+GGG | + | chr1_1:10617651-10617670 | Msa0007390:intron | 35.0% | |
| !! | TCCTGATTTTAGGGATCTTT+TGG | + | chr1_1:10617790-10617809 | Msa0007390:intron | 35.0% |
| TCCAAAAGATCCCTAAAATC+AGG | - | chr1_1:10617794-10617813 | None:intergenic | 35.0% | |
| !! | GTTATATTTTTGCGCAGAAC+TGG | + | chr1_1:10617968-10617987 | Msa0007390:intron | 35.0% |
| !!! | TCCATGGTTTTTTTTGGCAT+AGG | + | chr1_1:10618114-10618133 | Msa0007390:intron | 35.0% |
| ACCTATGCCAAAAAAAACCA+TGG | - | chr1_1:10618118-10618137 | None:intergenic | 35.0% | |
| TCTGTGATATGTCAAAGGTT+TGG | + | chr1_1:10618650-10618669 | Msa0007390:CDS | 35.0% | |
| CTGTGATATGTCAAAGGTTT+GGG | + | chr1_1:10618651-10618670 | Msa0007390:CDS | 35.0% | |
| GTGTAAACAACCATCAGATA+GGG | - | chr1_1:10618754-10618773 | None:intergenic | 35.0% | |
| AGTGTAAACAACCATCAGAT+AGG | - | chr1_1:10618755-10618774 | None:intergenic | 35.0% | |
| TATAATACGTGTTTGTGCCA+AGG | + | chr1_1:10618917-10618936 | Msa0007390:intron | 35.0% | |
| TATGGTGATCGATGAAATAG+TGG | + | chr1_1:10618967-10618986 | Msa0007390:intron | 35.0% | |
| GATAACACTATTAGTGTCCT+TGG | - | chr1_1:10619072-10619091 | None:intergenic | 35.0% | |
| TAGTGTTATCCTTTACATGC+AGG | + | chr1_1:10619082-10619101 | Msa0007390:intron | 35.0% | |
| TTATCCTTTACATGCAGGTT+TGG | + | chr1_1:10619087-10619106 | Msa0007390:intron | 35.0% | |
| ! | TTTTTCCACAATCATTGCAC+AGG | - | chr1_1:10619115-10619134 | None:intergenic | 35.0% |
| AAAATGGAAACGGACATTAG+AGG | - | chr1_1:10619138-10619157 | None:intergenic | 35.0% | |
| TTTGCGCTACAAAATGGAAA+CGG | - | chr1_1:10619148-10619167 | None:intergenic | 35.0% | |
| !! | GATTCCGGATTTGATTTTGG+AGG | - | chr1_1:10612856-10612875 | None:intergenic | 40.0% |
| TTTGCAGGAGAAGGGATATA+TGG | + | chr1_1:10612906-10612925 | Msa0007390:intron | 40.0% | |
| GAGAAGGGATATATGGAACA+TGG | + | chr1_1:10612913-10612932 | Msa0007390:intron | 40.0% | |
| ! | CTTTTGCCTCATTGTGACAA+TGG | - | chr1_1:10613094-10613113 | None:intergenic | 40.0% |
| GTGACAATTGAGGAAAGGAT+TGG | - | chr1_1:10613219-10613238 | None:intergenic | 40.0% | |
| ! | TGATGGTGACAATTGAGGAA+AGG | - | chr1_1:10613224-10613243 | None:intergenic | 40.0% |
| CTCTCTGCAATTGAAAACAC+TGG | - | chr1_1:10613290-10613309 | None:intergenic | 40.0% | |
| CGTTTCATTCTCACATGAGT+TGG | - | chr1_1:10613909-10613928 | None:intergenic | 40.0% | |
| TGTGGTCTCTTTGACTATTG+TGG | - | chr1_1:10614137-10614156 | None:intergenic | 40.0% | |
| CAATAGTCAAAGAGACCACA+AGG | + | chr1_1:10614137-10614156 | Msa0007390:intron | 40.0% | |
| !! | ATTCAAGTTGAGTTTCTCCG+AGG | + | chr1_1:10614725-10614744 | Msa0007390:intron | 40.0% |
| !! | GGTGATTGAGTTGATGATGA+GGG | + | chr1_1:10614771-10614790 | Msa0007390:intron | 40.0% |
| ! | TACTGGAGAAGGCATAATTC+AGG | - | chr1_1:10614811-10614830 | None:intergenic | 40.0% |
| TGAATTATGCCTTCTCCAGT+AGG | + | chr1_1:10614810-10614829 | Msa0007390:intron | 40.0% | |
| AGCTAATCAAACTCCTCGAT+TGG | - | chr1_1:10614904-10614923 | None:intergenic | 40.0% | |
| ! | AAAGTCAAACACTTCGGGTT+CGG | - | chr1_1:10614940-10614959 | None:intergenic | 40.0% |
| CCACAAAAGTCAAACACTTC+GGG | - | chr1_1:10614945-10614964 | None:intergenic | 40.0% | |
| TGAACAATACCTTGCCTTCT+TGG | - | chr1_1:10615085-10615104 | None:intergenic | 40.0% | |
| !! | AAGGCAAGGTATTGTTCACA+TGG | + | chr1_1:10615087-10615106 | Msa0007390:intron | 40.0% |
| !! | AGGCAAGGTATTGTTCACAT+GGG | + | chr1_1:10615088-10615107 | Msa0007390:intron | 40.0% |
| GAAATTTGGATGCCCTTGAT+AGG | + | chr1_1:10615142-10615161 | Msa0007390:intron | 40.0% | |
| TAGGGAGTAGGACTTGAAAA+TGG | + | chr1_1:10615161-10615180 | Msa0007390:intron | 40.0% | |
| GTAGGACTTGAAAATGGATG+AGG | + | chr1_1:10615167-10615186 | Msa0007390:intron | 40.0% | |
| CTTGAAAATGGATGAGGGTA+TGG | + | chr1_1:10615173-10615192 | Msa0007390:intron | 40.0% | |
| !!! | CTTCCTGTTTTTTGAAGACC+CGG | + | chr1_1:10615246-10615265 | Msa0007390:intron | 40.0% |
| TTCTCTACTTATCAGGCTCT+TGG | - | chr1_1:10615299-10615318 | None:intergenic | 40.0% | |
| ATCCTCAACATCTGATTCAG+AGG | + | chr1_1:10615469-10615488 | Msa0007390:intron | 40.0% | |
| AACCTCTGAATCAGATGTTG+AGG | - | chr1_1:10615474-10615493 | None:intergenic | 40.0% | |
| TCAACATCTGATTCAGAGGT+TGG | + | chr1_1:10615473-10615492 | Msa0007390:intron | 40.0% | |
| AAATCAGAGAAGGAGCCAAA+GGG | - | chr1_1:10615506-10615525 | None:intergenic | 40.0% | |
| AAAATCAGAGAAGGAGCCAA+AGG | - | chr1_1:10615507-10615526 | None:intergenic | 40.0% | |
| !!! | TCCTTCTCTGATTTTGACTC+TGG | + | chr1_1:10615512-10615531 | Msa0007390:intron | 40.0% |
| AAACCTCAAGCGCAAAATGA+TGG | - | chr1_1:10615549-10615568 | None:intergenic | 40.0% | |
| AATTTCCATCGGAAATGCTG+GGG | - | chr1_1:10615576-10615595 | None:intergenic | 40.0% | |
| GAATTTCCATCGGAAATGCT+GGG | - | chr1_1:10615577-10615596 | None:intergenic | 40.0% | |
| AGAATTTCCATCGGAAATGC+TGG | - | chr1_1:10615578-10615597 | None:intergenic | 40.0% | |
| ATGGCTGAGAGAATTTCCAT+CGG | - | chr1_1:10615587-10615606 | None:intergenic | 40.0% | |
| !! | GGTTTCATGATTTGCTCAAG+AGG | + | chr1_1:10615665-10615684 | Msa0007390:intron | 40.0% |
| ACCGTTGAATGTGCTATACA+AGG | + | chr1_1:10615710-10615729 | Msa0007390:intron | 40.0% | |
| ! | AATCTAGAAGCGTGCTCTTA+AGG | + | chr1_1:10615770-10615789 | Msa0007390:intron | 40.0% |
| GTTTGACCGACCTTAACAAA+TGG | - | chr1_1:10615928-10615947 | None:intergenic | 40.0% | |
| TTGTCAAATAGCGGCTATAG+GGG | - | chr1_1:10616093-10616112 | None:intergenic | 40.0% | |
| GTTGTCAAATAGCGGCTATA+GGG | - | chr1_1:10616094-10616113 | None:intergenic | 40.0% | |
| TGTTGTCAAATAGCGGCTAT+AGG | - | chr1_1:10616095-10616114 | None:intergenic | 40.0% | |
| ATTGAGCACAGAACAGGAAA+AGG | - | chr1_1:10616552-10616571 | None:intergenic | 40.0% | |
| CGTTAATTGTGGTGTTTGCA+TGG | + | chr1_1:10617077-10617096 | Msa0007390:CDS | 40.0% | |
| AATTGCAGTTACAGACTCAC+TGG | - | chr1_1:10617234-10617253 | None:intergenic | 40.0% | |
| AAGCAGCAGTACCATTGTAA+TGG | + | chr1_1:10617300-10617319 | Msa0007390:CDS | 40.0% | |
| ! | GCAGGTATGAATTGATAACC+TGG | + | chr1_1:10617334-10617353 | Msa0007390:intron | 40.0% |
| !!! | GATAACCTGGTTTTGTAGTC+TGG | + | chr1_1:10617347-10617366 | Msa0007390:intron | 40.0% |
| ATGTTCCAGACTACAAAACC+AGG | - | chr1_1:10617355-10617374 | None:intergenic | 40.0% | |
| GATGGCAACATGTTTCAACA+GGG | + | chr1_1:10617397-10617416 | Msa0007390:intron | 40.0% | |
| ATGGCAACATGTTTCAACAG+GGG | + | chr1_1:10617398-10617417 | Msa0007390:intron | 40.0% | |
| AAATTCTAACACGTGCCCTA+AGG | + | chr1_1:10617464-10617483 | Msa0007390:intron | 40.0% | |
| AATTCTAACACGTGCCCTAA+GGG | + | chr1_1:10617465-10617484 | Msa0007390:intron | 40.0% | |
| ! | GCAAGACCCTTTTCTCTTTT+TGG | + | chr1_1:10617627-10617646 | Msa0007390:intron | 40.0% |
| !! | GAAACTATTTTGGGTGGATG+TGG | - | chr1_1:10617729-10617748 | None:intergenic | 40.0% |
| !! | GTGCTAGGCTAGTTTAGTTA+AGG | - | chr1_1:10617761-10617780 | None:intergenic | 40.0% |
| TCAGGATAAAGCTAAGTGCT+AGG | - | chr1_1:10617776-10617795 | None:intergenic | 40.0% | |
| !! | ATATTTTTGCGCAGAACTGG+CGG | + | chr1_1:10617971-10617990 | Msa0007390:intron | 40.0% |
| !!! | TGATTGCCCTGTTTGTTTTG+AGG | + | chr1_1:10618197-10618216 | Msa0007390:CDS | 40.0% |
| TTGCTGGAATCTGATTCATG+TGG | + | chr1_1:10618400-10618419 | Msa0007390:intron | 40.0% | |
| ! | TTATGGATTGTATGTCCGCA+CGG | - | chr1_1:10618483-10618502 | None:intergenic | 40.0% |
| GTCAAAGGTTTGGGAGAAAT+TGG | + | chr1_1:10618660-10618679 | Msa0007390:CDS | 40.0% | |
| ! | TTTTGATATGGCTCAGGCAT+TGG | - | chr1_1:10618706-10618725 | None:intergenic | 40.0% |
| !!! | TTTTTTCCCACCCTATCTGA+TGG | + | chr1_1:10618741-10618760 | Msa0007390:intron | 40.0% |
| AAACAACCATCAGATAGGGT+GGG | - | chr1_1:10618750-10618769 | None:intergenic | 40.0% | |
| TAAACAACCATCAGATAGGG+TGG | - | chr1_1:10618751-10618770 | None:intergenic | 40.0% | |
| TTACACTACGCGTATGCTTA+CGG | + | chr1_1:10618768-10618787 | Msa0007390:intron | 40.0% | |
| TGCCTGTACGCATATGAATT+TGG | + | chr1_1:10618830-10618849 | Msa0007390:intron | 40.0% | |
| GACCAAATTCATATGCGTAC+AGG | - | chr1_1:10618835-10618854 | None:intergenic | 40.0% | |
| TTGTGCCAAGGATGTCTTAT+TGG | + | chr1_1:10618929-10618948 | Msa0007390:intron | 40.0% | |
| TAGCACCAATAAGACATCCT+TGG | - | chr1_1:10618937-10618956 | None:intergenic | 40.0% | |
| !! | AGGATGTCTTATTGGTGCTA+TGG | + | chr1_1:10618937-10618956 | Msa0007390:intron | 40.0% |
| !! | ATGTCTTATTGGTGCTATGG+AGG | + | chr1_1:10618940-10618959 | Msa0007390:intron | 40.0% |
| !! | TGGTGCTATGGAGGTATATA+TGG | + | chr1_1:10618949-10618968 | Msa0007390:intron | 40.0% |
| ! | GGCATTTTTGCGCTACAAAA+TGG | - | chr1_1:10619154-10619173 | None:intergenic | 40.0% |
| TGTTGTAGGAATTGCAGTTG+AGG | - | chr1_1:10619175-10619194 | None:intergenic | 40.0% | |
| ! | TCTTGTTTGTCGTGTGTTGT+AGG | - | chr1_1:10619189-10619208 | None:intergenic | 40.0% |
| TACAACACACGACAAACAAG+AGG | + | chr1_1:10619188-10619207 | Msa0007390:CDS | 40.0% | |
| TACTTGATGCTGTTCTCTCT+TGG | + | chr1_1:10619296-10619315 | Msa0007390:three_prime_UTR | 40.0% | |
| !! | AATCTGTCGTTTGGTGGATT+CGG | + | chr1_1:10619426-10619445 | Msa0007390:three_prime_UTR | 40.0% |
| ! | TTGGTGTTTACCTGGCTTGA+TGG | + | chr1_1:10612621-10612640 | Msa0007390:intron | 45.0% |
| ! | TGGTGTTTACCTGGCTTGAT+GGG | + | chr1_1:10612622-10612641 | Msa0007390:intron | 45.0% |
| TGGAGGATAAACGCCTTCTT+CGG | - | chr1_1:10612839-10612858 | None:intergenic | 45.0% | |
| ACTTGATTCTTCTCCAGGCA+AGG | - | chr1_1:10612878-10612897 | None:intergenic | 45.0% | |
| TTTGCAGATGCCAACACTAC+CGG | + | chr1_1:10613018-10613037 | Msa0007390:intron | 45.0% | |
| TTGCCTCATTGTGACAATGG+CGG | - | chr1_1:10613091-10613110 | None:intergenic | 45.0% | |
| TTGGCATATGCATGCATGTG+TGG | + | chr1_1:10613373-10613392 | Msa0007390:intron | 45.0% | |
| TGGCATATGCATGCATGTGT+GGG | + | chr1_1:10613374-10613393 | Msa0007390:intron | 45.0% | |
| CTGACTTCCATGCATTCACT+TGG | - | chr1_1:10613570-10613589 | None:intergenic | 45.0% | |
| ! | TTCTCCGAGGTTGATTGAGT+TGG | + | chr1_1:10614738-10614757 | Msa0007390:intron | 45.0% |
| GGAACCAACTCAATCAACCT+CGG | - | chr1_1:10614745-10614764 | None:intergenic | 45.0% | |
| !! | TGATTGAGTTGGTTCCTCTG+AGG | + | chr1_1:10614749-10614768 | Msa0007390:intron | 45.0% |
| !! | GATTGAGTTGGTTCCTCTGA+GGG | + | chr1_1:10614750-10614769 | Msa0007390:intron | 45.0% |
| ATCAACTCAATCACCCTCAG+AGG | - | chr1_1:10614766-10614785 | None:intergenic | 45.0% | |
| !! | GGGTGATTGAGTTGATGATG+AGG | + | chr1_1:10614770-10614789 | Msa0007390:intron | 45.0% |
| !! | AGTTGATGATGAGGGCACAT+TGG | + | chr1_1:10614779-10614798 | Msa0007390:intron | 45.0% |
| !! | GTTGATGATGAGGGCACATT+GGG | + | chr1_1:10614780-10614799 | Msa0007390:intron | 45.0% |
| ! | AAGTCAAACACTTCGGGTTC+GGG | - | chr1_1:10614939-10614958 | None:intergenic | 45.0% |
| !! | CCCGAAGTGTTTGACTTTTG+TGG | + | chr1_1:10614942-10614961 | Msa0007390:intron | 45.0% |
| AATACCTTGCCTTCTTGGCT+TGG | - | chr1_1:10615080-10615099 | None:intergenic | 45.0% | |
| GGTTGTGCAAGTTAGCACTA+CGG | + | chr1_1:10615120-10615139 | Msa0007390:intron | 45.0% | |
| CAAGTCCTACTCCCTATCAA+GGG | - | chr1_1:10615157-10615176 | None:intergenic | 45.0% | |
| TCAAGTCCTACTCCCTATCA+AGG | - | chr1_1:10615158-10615177 | None:intergenic | 45.0% | |
| GATTAGCAGCTACGATCCTT+CGG | + | chr1_1:10615198-10615217 | Msa0007390:intron | 45.0% | |
| TGTCCGGGTCTTCAAAAAAC+AGG | - | chr1_1:10615252-10615271 | None:intergenic | 45.0% | |
| AAAACGGTCATAAGCGTGTC+CGG | - | chr1_1:10615268-10615287 | None:intergenic | 45.0% | |
| TCTACTTATCAGGCTCTTGG+AGG | - | chr1_1:10615296-10615315 | None:intergenic | 45.0% | |
| !! | TTTCCTGTCACAGTACTGAC+AGG | + | chr1_1:10615319-10615338 | Msa0007390:intron | 45.0% |
| !! | TTCCTGTCACAGTACTGACA+GGG | + | chr1_1:10615320-10615339 | Msa0007390:intron | 45.0% |
| AATTCCTTCACGTCTTGCTC+CGG | + | chr1_1:10615344-10615363 | Msa0007390:intron | 45.0% | |
| TGCTGCTGATGAACCTTTAC+CGG | - | chr1_1:10615366-10615385 | None:intergenic | 45.0% | |
| !! | GCATTCTGAGATGAACGTGA+AGG | + | chr1_1:10615383-10615402 | Msa0007390:intron | 45.0% |
| ACTTCCAAAGCCTTGGAGAA+GGG | - | chr1_1:10615413-10615432 | None:intergenic | 45.0% | |
| !! | TTCTCCAAGGCTTTGGAAGT+GGG | + | chr1_1:10615413-10615432 | Msa0007390:intron | 45.0% |
| !! | TTGAGGATTTGCTGACCCTA+AGG | - | chr1_1:10615457-10615476 | None:intergenic | 45.0% |
| ACATCTGATTCAGAGGTTGG+TGG | + | chr1_1:10615476-10615495 | Msa0007390:intron | 45.0% | |
| GCCAGAGTCAAAATCAGAGA+AGG | - | chr1_1:10615516-10615535 | None:intergenic | 45.0% | |
| ACGCAAGAATTAGCCGTCAT+GGG | - | chr1_1:10616361-10616380 | None:intergenic | 45.0% | |
| AACGCAAGAATTAGCCGTCA+TGG | - | chr1_1:10616362-10616381 | None:intergenic | 45.0% | |
| TGACGGCTAATTCTTGCGTT+TGG | + | chr1_1:10616362-10616381 | Msa0007390:intron | 45.0% | |
| ! | ACTTTGTGGCACTGAACAAG+AGG | + | chr1_1:10616622-10616641 | Msa0007390:intron | 45.0% |
| ! | AGGTTCTTCCAGGTGTTTTG+TGG | + | chr1_1:10616863-10616882 | Msa0007390:intron | 45.0% |
| TCTCACAACCACAAAACACC+TGG | - | chr1_1:10616874-10616893 | None:intergenic | 45.0% | |
| CAGTACCATTGTAATGGCTG+TGG | + | chr1_1:10617306-10617325 | Msa0007390:CDS | 45.0% | |
| GTAATGGCTGTGGAATTTGC+AGG | + | chr1_1:10617316-10617335 | Msa0007390:CDS | 45.0% | |
| GGATGGCAACATGTTTCAAC+AGG | + | chr1_1:10617396-10617415 | Msa0007390:intron | 45.0% | |
| ! | CTTGCTAACTTGTGCCCTAA+GGG | - | chr1_1:10617612-10617631 | None:intergenic | 45.0% |
| ! | TCTTGCTAACTTGTGCCCTA+AGG | - | chr1_1:10617613-10617632 | None:intergenic | 45.0% |
| TGCCCTAAGGTTGCATGTTA+AGG | - | chr1_1:10617656-10617675 | None:intergenic | 45.0% | |
| ! | TCTTGCTAACTTGTGCCCTA+AGG | - | chr1_1:10617613-10617632 | None:intergenic | 45.0% |
| ! | TGAGTTCTGACACAAAGCCA+AGG | - | chr1_1:10617934-10617953 | None:intergenic | 45.0% |
| GATGTCATTGTTATGCCGTG+CGG | + | chr1_1:10618465-10618484 | Msa0007390:CDS | 45.0% | |
| ATGCCCTCTCTGTTCAAAGT+CGG | + | chr1_1:10618627-10618646 | Msa0007390:CDS | 45.0% | |
| ! | AGACCGACTTTGAACAGAGA+GGG | - | chr1_1:10618633-10618652 | None:intergenic | 45.0% |
| GTCGGTCTGTGATATGTCAA+AGG | + | chr1_1:10618645-10618664 | Msa0007390:CDS | 45.0% | |
| GGTTTGGGAGAAATTGGACA+TGG | + | chr1_1:10618666-10618685 | Msa0007390:CDS | 45.0% | |
| TACACTACGCGTATGCTTAC+GGG | + | chr1_1:10618769-10618788 | Msa0007390:intron | 45.0% | |
| CGCATATGAATTTGGTCCGT+TGG | + | chr1_1:10618838-10618857 | Msa0007390:intron | 45.0% | |
| TTCTAGGTGCATACTGGAGA+AGG | - | chr1_1:10619012-10619031 | None:intergenic | 45.0% | |
| CTATGCTTCTAGGTGCATAC+TGG | - | chr1_1:10619018-10619037 | None:intergenic | 45.0% | |
| ! | CACCTAGAAGCATAGACTTG+CGG | + | chr1_1:10619023-10619042 | Msa0007390:intron | 45.0% |
| AACCGCAAGTCTATGCTTCT+AGG | - | chr1_1:10619028-10619047 | None:intergenic | 45.0% | |
| GGATCCAAACCTGCATGTAA+AGG | - | chr1_1:10619094-10619113 | None:intergenic | 45.0% | |
| TGGATCCTGTGCAATGATTG+TGG | + | chr1_1:10619107-10619126 | Msa0007390:CDS | 45.0% | |
| CTACAAGGATGCTGTACACT+TGG | + | chr1_1:10619319-10619338 | Msa0007390:three_prime_UTR | 45.0% | |
| TTCAACGCGCTTAGACACAT+TGG | + | chr1_1:10619345-10619364 | Msa0007390:three_prime_UTR | 45.0% | |
| !! | TTAGGTTGGGGAGTAAGAGT+TGG | + | chr1_1:10619391-10619410 | Msa0007390:three_prime_UTR | 45.0% |
| AGCTGCTGTAATCTGTCGTT+TGG | + | chr1_1:10619417-10619436 | Msa0007390:three_prime_UTR | 45.0% | |
| ! | TGCTGTAATCTGTCGTTTGG+TGG | + | chr1_1:10619420-10619439 | Msa0007390:three_prime_UTR | 45.0% |
| !! | ATCTGTCGTTTGGTGGATTC+GGG | + | chr1_1:10619427-10619446 | Msa0007390:three_prime_UTR | 45.0% |
| !! | CATATTATAAAAAATATATT+AGG | - | chr1_1:10613127-10613146 | None:intergenic | 5.0% |
| !! | TATATTAAATATATGTATTA+AGG | + | chr1_1:10615984-10616003 | Msa0007390:intron | 5.0% |
| ! | GGTGTTTACCTGGCTTGATG+GGG | + | chr1_1:10612623-10612642 | Msa0007390:intron | 50.0% |
| TTTAGTCACCCCATCAAGCC+AGG | - | chr1_1:10612634-10612653 | None:intergenic | 50.0% | |
| ! | GATAGCTTGTATCATGGGCG+AGG | + | chr1_1:10612756-10612775 | Msa0007390:intron | 50.0% |
| TCAAATCCGGAATCCTTGCC+TGG | + | chr1_1:10612862-10612881 | Msa0007390:CDS | 50.0% | |
| TCTTCTCCAGGCAAGGATTC+CGG | - | chr1_1:10612871-10612890 | None:intergenic | 50.0% | |
| TTGCCGCCATTGTCACAATG+AGG | + | chr1_1:10613085-10613104 | Msa0007390:intron | 50.0% | |
| TCTCGTGATCCTACTGGAGA+AGG | - | chr1_1:10614822-10614841 | None:intergenic | 50.0% | |
| ! | CAAACTCCTCGATTGGCTGA+GGG | - | chr1_1:10614897-10614916 | None:intergenic | 50.0% |
| ! | TCAAACTCCTCGATTGGCTG+AGG | - | chr1_1:10614898-10614917 | None:intergenic | 50.0% |
| !! | TCCCAAATTGTGGTGTTGCG+AGG | + | chr1_1:10615009-10615028 | Msa0007390:intron | 50.0% |
| CCCTCGCAACACCACAATTT+GGG | - | chr1_1:10615013-10615032 | None:intergenic | 50.0% | |
| !! | CCCAAATTGTGGTGTTGCGA+GGG | + | chr1_1:10615010-10615029 | Msa0007390:intron | 50.0% |
| !! | CCAAATTGTGGTGTTGCGAG+GGG | + | chr1_1:10615011-10615030 | Msa0007390:intron | 50.0% |
| !! | TCTTGGCTTGGTTCACCTTC+TGG | - | chr1_1:10615068-10615087 | None:intergenic | 50.0% |
| GAAGGTGAACCAAGCCAAGA+AGG | + | chr1_1:10615068-10615087 | Msa0007390:intron | 50.0% | |
| TGAACCAAGCCAAGAAGGCA+AGG | + | chr1_1:10615073-10615092 | Msa0007390:intron | 50.0% | |
| ! | GCTAACTTGCACAACCCAGT+TGG | - | chr1_1:10615116-10615135 | None:intergenic | 50.0% |
| AAACGGTCATAAGCGTGTCC+GGG | - | chr1_1:10615267-10615286 | None:intergenic | 50.0% | |
| ! | GGACACGCTTATGACCGTTT+TGG | + | chr1_1:10615267-10615286 | Msa0007390:intron | 50.0% |
| GCTCTTGGAGGACACCAAAA+CGG | - | chr1_1:10615284-10615303 | None:intergenic | 50.0% | |
| TTCCCTGTCAGTACTGTGAC+AGG | - | chr1_1:10615325-10615344 | None:intergenic | 50.0% | |
| TTTACCGGAGCAAGACGTGA+AGG | - | chr1_1:10615351-10615370 | None:intergenic | 50.0% | |
| TTCACGTCTTGCTCCGGTAA+AGG | + | chr1_1:10615350-10615369 | Msa0007390:intron | 50.0% | |
| CACTTCCAAAGCCTTGGAGA+AGG | - | chr1_1:10615414-10615433 | None:intergenic | 50.0% | |
| !! | CTTCTCCAAGGCTTTGGAAG+TGG | + | chr1_1:10615412-10615431 | Msa0007390:intron | 50.0% |
| !! | GATTTGCTGACCCTAAGGCT+TGG | - | chr1_1:10615452-10615471 | None:intergenic | 50.0% |
| !! | GAGGTTGGTGGTATTCCCTT+TGG | + | chr1_1:10615488-10615507 | Msa0007390:intron | 50.0% |
| CCTCAAGCGCAAAATGATGG+AGG | - | chr1_1:10615546-10615565 | None:intergenic | 50.0% | |
| ! | CCTCCATCATTTTGCGCTTG+AGG | + | chr1_1:10615543-10615562 | Msa0007390:intron | 50.0% |
| TTTGTCCCCAGCATTTCCGA+TGG | + | chr1_1:10615568-10615587 | Msa0007390:intron | 50.0% | |
| GTGCTATAGCACTGTCGTAG+CGG | - | chr1_1:10616071-10616090 | None:intergenic | 50.0% | |
| !! | ACCTGTTTGACTTGGTGTCG+AGG | - | chr1_1:10616478-10616497 | None:intergenic | 50.0% |
| ! | TTGTGGCACTGAACAAGAGG+TGG | + | chr1_1:10616625-10616644 | Msa0007390:intron | 50.0% |
| ! | TGTGGCACTGAACAAGAGGT+GGG | + | chr1_1:10616626-10616645 | Msa0007390:intron | 50.0% |
| TACTGTCAGGAGGTTCTTCC+AGG | + | chr1_1:10616853-10616872 | Msa0007390:intron | 50.0% | |
| TGCATTGCTCCTTCCACACA+GGG | - | chr1_1:10618174-10618193 | None:intergenic | 50.0% | |
| ATGCATTGCTCCTTCCACAC+AGG | - | chr1_1:10618175-10618194 | None:intergenic | 50.0% | |
| ! | CAGACCGACTTTGAACAGAG+AGG | - | chr1_1:10618634-10618653 | None:intergenic | 50.0% |
| GCTGTTCTCTCTTGGCTACA+AGG | + | chr1_1:10619304-10619323 | Msa0007390:three_prime_UTR | 50.0% | |
| !! | TCGTTTGGTGGATTCGGGTT+AGG | + | chr1_1:10619432-10619451 | Msa0007390:three_prime_UTR | 50.0% |
| !! | CGTTTGGTGGATTCGGGTTA+GGG | + | chr1_1:10619433-10619452 | Msa0007390:three_prime_UTR | 50.0% |
| AGCTTGTATCATGGGCGAGG+TGG | + | chr1_1:10612759-10612778 | Msa0007390:intron | 55.0% | |
| GGCATCTTCTCCGGTAGTGT+TGG | - | chr1_1:10613031-10613050 | None:intergenic | 55.0% | |
| ACCGGAGAAGATGCCGAATC+AGG | + | chr1_1:10613036-10613055 | Msa0007390:CDS | 55.0% | |
| !! | CCCTGATTCGGCATCTTCTC+CGG | - | chr1_1:10613040-10613059 | None:intergenic | 55.0% |
| CCGGAGAAGATGCCGAATCA+GGG | + | chr1_1:10613037-10613056 | Msa0007390:CDS | 55.0% | |
| CGGAGAAGATGCCGAATCAG+GGG | + | chr1_1:10613038-10613057 | Msa0007390:CDS | 55.0% | |
| CCCCTCGCAACACCACAATT+TGG | - | chr1_1:10615014-10615033 | None:intergenic | 55.0% | |
| ! | GGTGTTGCGAGGGGTGAATT+TGG | + | chr1_1:10615020-10615039 | Msa0007390:intron | 55.0% |
| ATCCCTCCATAGCCACCAGA+AGG | + | chr1_1:10615050-10615069 | Msa0007390:intron | 55.0% | |
| CACCTTCTGGTGGCTATGGA+GGG | - | chr1_1:10615055-10615074 | None:intergenic | 55.0% | |
| TCACCTTCTGGTGGCTATGG+AGG | - | chr1_1:10615056-10615075 | None:intergenic | 55.0% | |
| GGTTCACCTTCTGGTGGCTA+TGG | - | chr1_1:10615059-10615078 | None:intergenic | 55.0% | |
| !! | TGGCTTGGTTCACCTTCTGG+TGG | - | chr1_1:10615065-10615084 | None:intergenic | 55.0% |
| TTGTTCACATGGGCGCCAAC+TGG | + | chr1_1:10615098-10615117 | Msa0007390:intron | 55.0% | |
| TGTTCACATGGGCGCCAACT+GGG | + | chr1_1:10615099-10615118 | Msa0007390:intron | 55.0% | |
| GGATGCCCTTGATAGGGAGT+AGG | + | chr1_1:10615149-10615168 | Msa0007390:intron | 55.0% | |
| TGAAGGTTCGCCCTTCTCCA+AGG | + | chr1_1:10615400-10615419 | Msa0007390:intron | 55.0% | |
| TTCGCCCTTCTCCAAGGCTT+TGG | + | chr1_1:10615406-10615425 | Msa0007390:intron | 55.0% | |
| AACGCCCACTTCCAAAGCCT+TGG | - | chr1_1:10615420-10615439 | None:intergenic | 55.0% | |
| !! | AAGGCTTTGGAAGTGGGCGT+TGG | + | chr1_1:10615419-10615438 | Msa0007390:intron | 55.0% |
| !! | AGGCTTTGGAAGTGGGCGTT+GGG | + | chr1_1:10615420-10615439 | Msa0007390:intron | 55.0% |
| ! | GCGCAAAATGATGGAGGAGC+AGG | - | chr1_1:10615540-10615559 | None:intergenic | 55.0% |
| ! | GGCTTCAGAGTGTCCCATGA+CGG | + | chr1_1:10616345-10616364 | Msa0007390:intron | 55.0% |
| GCCTCGACACCAAGTCAAAC+AGG | + | chr1_1:10616474-10616493 | Msa0007390:CDS | 55.0% | |
| !! | GAGGGCATTGAGCACAGAAC+AGG | - | chr1_1:10616558-10616577 | None:intergenic | 55.0% |
| GCATTGCTCCTTCCACACAG+GGG | - | chr1_1:10618173-10618192 | None:intergenic | 55.0% | |
| TGCAACAGGGGCCCCTGATT+CGG | - | chr1_1:10613052-10613071 | None:intergenic | 60.0% | |
| TCTGCACCCTCAGCCAATCG+AGG | + | chr1_1:10614888-10614907 | Msa0007390:intron | 60.0% | |
| !! | CTTTGGAAGTGGGCGTTGGG+CGG | + | chr1_1:10615423-10615442 | Msa0007390:intron | 60.0% |
| TTGGGCGGAAGCCAAGCCTT+AGG | + | chr1_1:10615438-10615457 | Msa0007390:intron | 60.0% | |
| TGGGCGGAAGCCAAGCCTTA+GGG | + | chr1_1:10615439-10615458 | Msa0007390:intron | 60.0% | |
| GAGAGACAGTCACCCCTGTG+TGG | + | chr1_1:10618158-10618177 | Msa0007390:CDS | 60.0% | |
| GACAGTCACCCCTGTGTGGA+AGG | + | chr1_1:10618162-10618181 | Msa0007390:CDS | 60.0% | |
| GGAGCTCTGTGAGCACTCAC+TGG | - | chr1_1:10618536-10618555 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10612615 | 10619588 | 10612615 | ID=Msa0007390;Name=Msa0007390 |
| chr1_1 | mRNA | 10612615 | 10619588 | 10612615 | ID=Msa0007390-mRNA-1;Parent=Msa0007390;Name=Msa0007390-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.6|0.72|1|0.6|0.63|11|374|276 |
| chr1_1 | exon | 10612615 | 10612618 | 10612615 | ID=Msa0007390-mRNA-1:exon:3875;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10612761 | 10612895 | 10612761 | ID=Msa0007390-mRNA-1:exon:3876;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10613025 | 10613095 | 10613025 | ID=Msa0007390-mRNA-1:exon:3877;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10616436 | 10616495 | 10616436 | ID=Msa0007390-mRNA-1:exon:3878;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10617063 | 10617140 | 10617063 | ID=Msa0007390-mRNA-1:exon:3879;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10617294 | 10617337 | 10617294 | ID=Msa0007390-mRNA-1:exon:3880;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10617985 | 10618025 | 10617985 | ID=Msa0007390-mRNA-1:exon:3881;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10618136 | 10618218 | 10618136 | ID=Msa0007390-mRNA-1:exon:3882;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10618444 | 10618535 | 10618444 | ID=Msa0007390-mRNA-1:exon:3883;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10618621 | 10618732 | 10618621 | ID=Msa0007390-mRNA-1:exon:3884;Parent=Msa0007390-mRNA-1 |
| chr1_1 | exon | 10619104 | 10619588 | 10619104 | ID=Msa0007390-mRNA-1:exon:3885;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10612615 | 10612618 | 10612615 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10612761 | 10612895 | 10612761 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10613025 | 10613095 | 10613025 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10616436 | 10616495 | 10616436 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10617063 | 10617140 | 10617063 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10617294 | 10617337 | 10617294 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10617985 | 10618025 | 10617985 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10618136 | 10618218 | 10618136 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10618444 | 10618535 | 10618444 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10618621 | 10618732 | 10618621 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | CDS | 10619104 | 10619214 | 10619104 | ID=Msa0007390-mRNA-1:cds;Parent=Msa0007390-mRNA-1 |
| chr1_1 | three_prime_UTR | 10619215 | 10619588 | 10619215 | ID=Msa0007390-mRNA-1:three_prime_utr;Parent=Msa0007390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
