Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007780 | Msa0056550 | 0.822930 | 1.819818e-53 | -8.615850e-47 |
| Msa0007780 | Msa0056680 | 0.809836 | 1.553737e-50 | -8.615850e-47 |
| Msa0007780 | Msa0056720 | 0.819203 | 1.313949e-52 | -8.615850e-47 |
| Msa0007780 | Msa0181290 | 0.800823 | 1.202853e-48 | -8.615850e-47 |
| Msa0007780 | Msa0440110 | 0.809076 | 2.262695e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007780 | MtrunA17_Chr1g0147671 | 95.000 | 240 | 12 | 0 | 123 | 362 | 207 | 446 | 1.08e-148 | 427 |
| Msa0007780 | MtrunA17_Chr1g0147671 | 95.683 | 139 | 6 | 0 | 1 | 139 | 1 | 139 | 1.86e-89 | 276 |
| Msa0007780 | MtrunA17_Chr3g0099911 | 28.444 | 450 | 216 | 10 | 13 | 359 | 1 | 447 | 9.41e-51 | 175 |
| Msa0007780 | MtrunA17_Chr2g0289391 | 36.214 | 243 | 138 | 3 | 133 | 359 | 188 | 429 | 1.58e-44 | 158 |
| Msa0007780 | MtrunA17_Chr8g0377091 | 34.167 | 240 | 141 | 3 | 137 | 360 | 211 | 449 | 5.66e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007780 | AT2G21080.1 | 56.106 | 303 | 104 | 10 | 67 | 361 | 132 | 413 | 1.94e-97 | 295 |
| Msa0007780 | AT2G21080.1 | 53.061 | 98 | 40 | 2 | 40 | 135 | 21 | 114 | 9.03e-23 | 99.0 |
| Msa0007780 | AT3G20300.1 | 36.803 | 269 | 144 | 4 | 116 | 359 | 182 | 449 | 8.81e-50 | 173 |
| Msa0007780 | AT1G50630.1 | 37.657 | 239 | 117 | 5 | 136 | 345 | 201 | 436 | 9.57e-44 | 157 |
| Msa0007780 | AT1G67570.1 | 35.391 | 243 | 134 | 4 | 139 | 360 | 212 | 452 | 9.12e-43 | 154 |
| Msa0007780 | AT4G22270.1 | 32.365 | 241 | 147 | 2 | 136 | 360 | 194 | 434 | 1.96e-36 | 137 |
| Msa0007780 | AT4G22270.2 | 32.018 | 228 | 139 | 2 | 136 | 347 | 194 | 421 | 3.68e-36 | 136 |
| Msa0007780 | AT4G03820.1 | 32.035 | 231 | 138 | 3 | 136 | 347 | 191 | 421 | 1.08e-34 | 132 |
| Msa0007780 | AT4G03820.3 | 32.035 | 231 | 138 | 3 | 136 | 347 | 240 | 470 | 1.32e-34 | 133 |
| Msa0007780 | AT4G03820.4 | 32.035 | 231 | 138 | 3 | 136 | 347 | 240 | 470 | 1.56e-34 | 133 |
| Msa0007780 | AT4G03820.2 | 32.035 | 231 | 138 | 3 | 136 | 347 | 191 | 421 | 1.73e-34 | 132 |
| Msa0007780 | AT1G50630.2 | 43.704 | 135 | 75 | 1 | 136 | 270 | 201 | 334 | 5.18e-31 | 122 |
| Msa0007780 | AT1G67570.2 | 37.500 | 144 | 89 | 1 | 137 | 280 | 210 | 352 | 1.39e-27 | 112 |
Find 69 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAGAGCACACCATTTA+AGG | 0.198157 | 1_1:+11039760 | None:intergenic |
| AGAAGCAGGTGTTATATTTA+AGG | 0.203283 | 1_1:-11038794 | Msa0007780:CDS |
| GGCTTCTTCTTGTGCATCTT+AGG | 0.235318 | 1_1:-11038425 | Msa0007780:CDS |
| GAGAAGACATTCTTCAATTC+TGG | 0.252926 | 1_1:-11038643 | Msa0007780:CDS |
| GGGTTCTCTATTGCTAGTTT+TGG | 0.258616 | 1_1:-11038677 | Msa0007780:CDS |
| ACTTTCGGATATGCCTTAAA+TGG | 0.275331 | 1_1:-11039773 | Msa0007780:CDS |
| AAGCAGATACTTGAACAAAT+AGG | 0.282476 | 1_1:+11039661 | None:intergenic |
| TGAGGATTAGAAGGCAATTA+TGG | 0.287173 | 1_1:-11038765 | Msa0007780:CDS |
| AGAGGAATTATCAATGTTAA+TGG | 0.296185 | 1_1:+11039908 | None:intergenic |
| TACAATGAGTGTTAGTCAAT+TGG | 0.314349 | 1_1:-11038698 | Msa0007780:CDS |
| TTTCAGACTAGACAATCTTT+AGG | 0.339756 | 1_1:-11038212 | Msa0007780:intron |
| GTCAGAGAAAGATACTCTTT+TGG | 0.360397 | 1_1:+11039884 | None:intergenic |
| TCCTTGGTTGATTCTGTTGA+AGG | 0.377806 | 1_1:+11039936 | None:intergenic |
| AATGTTAATGGTTGTGTCCT+TGG | 0.382680 | 1_1:+11039920 | None:intergenic |
| CTTCAAATATTGAGATTTGA+AGG | 0.390973 | 1_1:-11038847 | Msa0007780:CDS |
| AGGAACATGTGAGGATTAGA+AGG | 0.398671 | 1_1:-11038774 | Msa0007780:CDS |
| TTGAATTCTCCATAGTGCTT+TGG | 0.398782 | 1_1:-11037686 | Msa0007780:CDS |
| ATGATGGCAAGTGCAGATTC+AGG | 0.410877 | 1_1:+11039591 | None:intergenic |
| AGCAGATACTTGAACAAATA+GGG | 0.411563 | 1_1:+11039662 | None:intergenic |
| TTGATGAACTAAGAAACTTT+CGG | 0.420225 | 1_1:-11039788 | Msa0007780:CDS |
| ACAATGAGTGTTAGTCAATT+GGG | 0.429137 | 1_1:-11038697 | Msa0007780:CDS |
| ACAAGCTTGTTCAAGGAGAT+AGG | 0.430827 | 1_1:+11039621 | None:intergenic |
| GTGTATCATTATATCTCATA+TGG | 0.437531 | 1_1:-11037576 | Msa0007780:three_prime_UTR |
| AGTGCTTTGGATTCTGAGTA+AGG | 0.442534 | 1_1:-11037673 | Msa0007780:CDS |
| TCTTAGTTCATCAAAGATCA+TGG | 0.445556 | 1_1:+11039797 | None:intergenic |
| CTCTCTACCGTTTCTTCCGA+AGG | 0.449304 | 1_1:-11039557 | Msa0007780:intron |
| ACTCAGAATCCAAAGCACTA+TGG | 0.455666 | 1_1:+11037677 | None:intergenic |
| TGTGTTGTTGCTGTTGCTGT+TGG | 0.458307 | 1_1:+11039862 | None:intergenic |
| CCCATGGTTGTGTTGTAGAT+AGG | 0.469534 | 1_1:+11037767 | None:intergenic |
| CAAATCTCAATATTTGAAGC+TGG | 0.469941 | 1_1:+11038851 | None:intergenic |
| CTCTGATTCAGCAGAAGCAT+TGG | 0.470394 | 1_1:+11038334 | None:intergenic |
| ATATAATGATACACATTCCT+TGG | 0.471917 | 1_1:+11037585 | None:intergenic |
| CATTCCTTGGCTCATATACA+AGG | 0.472347 | 1_1:+11037598 | None:intergenic |
| GAGAGACTATAGAAGTAAGA+AGG | 0.481703 | 1_1:+11040050 | None:intergenic |
| GAAACGGTAGAGAGTGAAGA+AGG | 0.481723 | 1_1:+11039566 | None:intergenic |
| TATTTGAACAAGCTTGTTCA+AGG | 0.484907 | 1_1:+11039614 | None:intergenic |
| GAGAGTGAAGAAGGAAATGA+TGG | 0.494904 | 1_1:+11039575 | None:intergenic |
| AATTATGGATTATAAGTCAT+AGG | 0.501167 | 1_1:-11038750 | Msa0007780:CDS |
| TTGTTTCCATTGCAACAAGA+TGG | 0.501813 | 1_1:-11038370 | Msa0007780:CDS |
| ATCATTATATCTCATATGGC+TGG | 0.514071 | 1_1:-11037572 | Msa0007780:three_prime_UTR |
| CTTGATCACTCATCTTGTGT+TGG | 0.518508 | 1_1:-11039744 | Msa0007780:CDS |
| TAAAGATTGTCTAGTCTGAA+AGG | 0.525351 | 1_1:+11038214 | None:intergenic |
| GAAGGGTGTGGATCAGAAGC+AGG | 0.525748 | 1_1:-11038808 | Msa0007780:CDS |
| ATCAGAATCACTACTATCAC+TGG | 0.527982 | 1_1:+11038280 | None:intergenic |
| CCTATCTACAACACAACCAT+GGG | 0.534196 | 1_1:-11037767 | Msa0007780:CDS |
| AAGGAGATAGGATCAACTTC+AGG | 0.540232 | 1_1:+11039633 | None:intergenic |
| AGAGAGGAACAATGAAAGTG+AGG | 0.542144 | 1_1:+11039691 | None:intergenic |
| CTTCAATTCTGGTGACCTTG+TGG | 0.547529 | 1_1:-11038632 | Msa0007780:intron |
| TTTGGTACCTTCGGAAGAAA+CGG | 0.549992 | 1_1:+11039550 | None:intergenic |
| AAAATCACACATAGAGCTCA+AGG | 0.557605 | 1_1:-11038395 | Msa0007780:CDS |
| ATTCTTTATAATCTGTTGTG+TGG | 0.569662 | 1_1:-11038722 | Msa0007780:CDS |
| AATGAAAGTGAGGAAGATGA+AGG | 0.573099 | 1_1:+11039701 | None:intergenic |
| CATGTGCCATCTTGTTGCAA+TGG | 0.581008 | 1_1:+11038364 | None:intergenic |
| ATTCAAGTCTAGAAAAGTGA+AGG | 0.587761 | 1_1:-11037630 | Msa0007780:three_prime_UTR |
| AAAGCCTTGTATATGAGCCA+AGG | 0.598222 | 1_1:-11037602 | Msa0007780:three_prime_UTR |
| TAAGATGGTTGAAGTAACAA+AGG | 0.601645 | 1_1:+11039834 | None:intergenic |
| ACCTATCTACAACACAACCA+TGG | 0.603127 | 1_1:-11037768 | Msa0007780:CDS |
| TATGGGTTTGCACTTGATCG+AGG | 0.603951 | 1_1:-11037732 | Msa0007780:CDS |
| TATTGATATATGTATGTCTG+AGG | 0.613114 | 1_1:+11038256 | None:intergenic |
| ACAAATAGGGTTGTGAAGAG+AGG | 0.616885 | 1_1:+11039675 | None:intergenic |
| GAAAGGAAGAGAGTCTCTGT+GGG | 0.624738 | 1_1:+11038231 | None:intergenic |
| TGTTCAGCAGTGCAATTGAG+TGG | 0.630731 | 1_1:-11038446 | Msa0007780:CDS |
| TGAAAGGAAGAGAGTCTCTG+TGG | 0.638408 | 1_1:+11038230 | None:intergenic |
| GCTTTGGATTCTGAGTAAGG+TGG | 0.656572 | 1_1:-11037670 | Msa0007780:CDS |
| TTATATTTAAGGAACATGTG+AGG | 0.659712 | 1_1:-11038783 | Msa0007780:CDS |
| TGCAACAAGATGGCACATGT+TGG | 0.683245 | 1_1:-11038360 | Msa0007780:CDS |
| ACCTTCAACAGAATCAACCA+AGG | 0.695999 | 1_1:-11039937 | Msa0007780:CDS |
| CTATCTACAACACAACCATG+GGG | 0.709943 | 1_1:-11037766 | Msa0007780:CDS |
| TATCTACAACACAACCATGG+GGG | 0.737474 | 1_1:-11037765 | Msa0007780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTAGGATAATTAAAA+GGG | + | chr1_1:11038144-11038163 | None:intergenic | 10.0% |
| !! | AAAATATTAGGATAATTAAA+AGG | + | chr1_1:11038145-11038164 | None:intergenic | 10.0% |
| !! | CTAAGTATAAATAATAATTT+CGG | - | chr1_1:11038277-11038296 | Msa0007780:CDS | 10.0% |
| !! | ATTAGAAAAAATTCTATTTA+AGG | + | chr1_1:11039045-11039064 | None:intergenic | 10.0% |
| !!! | AATTTTTATGAGACAATTAT+GGG | + | chr1_1:11037524-11037543 | None:intergenic | 15.0% |
| !!! | TAATTTTTATGAGACAATTA+TGG | + | chr1_1:11037525-11037544 | None:intergenic | 15.0% |
| !!! | AAGAAGGCAAATAATTTTTT+GGG | + | chr1_1:11037478-11037497 | None:intergenic | 20.0% |
| !!! | TAAGAAGGCAAATAATTTTT+TGG | + | chr1_1:11037479-11037498 | None:intergenic | 20.0% |
| !!! | ACTATGATGAAAAATTGTTT+TGG | + | chr1_1:11038012-11038031 | None:intergenic | 20.0% |
| !! | AATGCAAGAAGAAAAATATT+AGG | + | chr1_1:11038157-11038176 | None:intergenic | 20.0% |
| !!! | TTGTATTTATGTTACTTTCA+TGG | - | chr1_1:11038614-11038633 | Msa0007780:intron | 20.0% |
| !!! | AATTATGGATTATAAGTCAT+AGG | - | chr1_1:11038791-11038810 | Msa0007780:CDS | 20.0% |
| ! | TGAATTGTTGAGACTAAAAA+TGG | + | chr1_1:11037549-11037568 | None:intergenic | 25.0% |
| ! | AGAGGAATTATCAATGTTAA+TGG | + | chr1_1:11037636-11037655 | None:intergenic | 25.0% |
| ! | TTGATGAACTAAGAAACTTT+CGG | - | chr1_1:11037753-11037772 | Msa0007780:CDS | 25.0% |
| !!! | AAAAATTGTTTTGGTACCTT+CGG | + | chr1_1:11038003-11038022 | None:intergenic | 25.0% |
| ! | TAGAGTATGTTTGTAACATA+GGG | + | chr1_1:11038348-11038367 | None:intergenic | 25.0% |
| ! | TTAGAGTATGTTTGTAACAT+AGG | + | chr1_1:11038349-11038368 | None:intergenic | 25.0% |
| ! | CTTCAAATATTGAGATTTGA+AGG | - | chr1_1:11038694-11038713 | Msa0007780:CDS | 25.0% |
| ! | TTATATTTAAGGAACATGTG+AGG | - | chr1_1:11038758-11038777 | Msa0007780:CDS | 25.0% |
| ! | ATTCTTTATAATCTGTTGTG+TGG | - | chr1_1:11038819-11038838 | Msa0007780:CDS | 25.0% |
| ! | TATTGATATATGTATGTCTG+AGG | + | chr1_1:11039288-11039307 | None:intergenic | 25.0% |
| !!! | CACATTATCTTTTTCACTAT+TGG | - | chr1_1:11039714-11039733 | Msa0007780:CDS | 25.0% |
| ! | ATATAATGATACACATTCCT+TGG | + | chr1_1:11039959-11039978 | None:intergenic | 25.0% |
| ! | GTGTATCATTATATCTCATA+TGG | - | chr1_1:11039965-11039984 | Msa0007780:five_prime_UTR | 25.0% |
| TAAGATGGTTGAAGTAACAA+AGG | + | chr1_1:11037710-11037729 | None:intergenic | 30.0% | |
| !! | GATTTTGATCTTGCATAAGA+TGG | + | chr1_1:11037725-11037744 | None:intergenic | 30.0% |
| TCTTAGTTCATCAAAGATCA+TGG | + | chr1_1:11037747-11037766 | None:intergenic | 30.0% | |
| AGCAGATACTTGAACAAATA+GGG | + | chr1_1:11037882-11037901 | None:intergenic | 30.0% | |
| AAGCAGATACTTGAACAAAT+AGG | + | chr1_1:11037883-11037902 | None:intergenic | 30.0% | |
| ! | TATTTGAACAAGCTTGTTCA+AGG | + | chr1_1:11037930-11037949 | None:intergenic | 30.0% |
| CTAAACCATGTAATGTGTTA+TGG | - | chr1_1:11038365-11038384 | Msa0007780:CDS | 30.0% | |
| CTAAGAATAGAAGTTGTCTT+AGG | + | chr1_1:11038402-11038421 | None:intergenic | 30.0% | |
| ACAAACACAATTGAGTGTAT+TGG | + | chr1_1:11038598-11038617 | None:intergenic | 30.0% | |
| ! | CAAATCTCAATATTTGAAGC+TGG | + | chr1_1:11038693-11038712 | None:intergenic | 30.0% |
| ! | AGAAGCAGGTGTTATATTTA+AGG | - | chr1_1:11038747-11038766 | Msa0007780:CDS | 30.0% |
| TACAATGAGTGTTAGTCAAT+TGG | - | chr1_1:11038843-11038862 | Msa0007780:CDS | 30.0% | |
| ACAATGAGTGTTAGTCAATT+GGG | - | chr1_1:11038844-11038863 | Msa0007780:CDS | 30.0% | |
| ACATTAATGTACTTACCACA+AGG | + | chr1_1:11038927-11038946 | None:intergenic | 30.0% | |
| TAAAGATTGTCTAGTCTGAA+AGG | + | chr1_1:11039330-11039349 | None:intergenic | 30.0% | |
| TTTCAGACTAGACAATCTTT+AGG | - | chr1_1:11039329-11039348 | Msa0007780:intron | 30.0% | |
| AACTAAAATAAACACATCCG+AGG | + | chr1_1:11039484-11039503 | None:intergenic | 30.0% | |
| ! | ACGTTCGAATTTTATGCATT+TGG | + | chr1_1:11039691-11039710 | None:intergenic | 30.0% |
| ATTCAAGTCTAGAAAAGTGA+AGG | - | chr1_1:11039911-11039930 | Msa0007780:CDS | 30.0% | |
| ATCATTATATCTCATATGGC+TGG | - | chr1_1:11039969-11039988 | Msa0007780:five_prime_UTR | 30.0% | |
| GAGAGACTATAGAAGTAAGA+AGG | + | chr1_1:11037494-11037513 | None:intergenic | 35.0% | |
| AATGTTAATGGTTGTGTCCT+TGG | + | chr1_1:11037624-11037643 | None:intergenic | 35.0% | |
| !! | GAAAGATACTCTTTTGGAAG+AGG | + | chr1_1:11037654-11037673 | None:intergenic | 35.0% |
| ! | GTCAGAGAAAGATACTCTTT+TGG | + | chr1_1:11037660-11037679 | None:intergenic | 35.0% |
| ACTTTCGGATATGCCTTAAA+TGG | - | chr1_1:11037768-11037787 | Msa0007780:CDS | 35.0% | |
| AATGAAAGTGAGGAAGATGA+AGG | + | chr1_1:11037843-11037862 | None:intergenic | 35.0% | |
| TGCATGTGTGTATACTATCA+TGG | - | chr1_1:11038038-11038057 | Msa0007780:intron | 35.0% | |
| AGTATGTTTGTAACATAGGG+TGG | + | chr1_1:11038345-11038364 | None:intergenic | 35.0% | |
| GTTCTACAAAGAAAGAAGGT+AGG | + | chr1_1:11038510-11038529 | None:intergenic | 35.0% | |
| GCAAGTTCTACAAAGAAAGA+AGG | + | chr1_1:11038514-11038533 | None:intergenic | 35.0% | |
| ! | GTGTTCACAAGCTTTTTGAA+GGG | - | chr1_1:11038716-11038735 | Msa0007780:CDS | 35.0% |
| TGAGGATTAGAAGGCAATTA+TGG | - | chr1_1:11038776-11038795 | Msa0007780:CDS | 35.0% | |
| GAGAAGACATTCTTCAATTC+TGG | - | chr1_1:11038898-11038917 | Msa0007780:CDS | 35.0% | |
| AAAATCACACATAGAGCTCA+AGG | - | chr1_1:11039146-11039165 | Msa0007780:intron | 35.0% | |
| TTGTTTCCATTGCAACAAGA+TGG | - | chr1_1:11039171-11039190 | Msa0007780:intron | 35.0% | |
| ATCAGAATCACTACTATCAC+TGG | + | chr1_1:11039264-11039283 | None:intergenic | 35.0% | |
| TTCTTAGTGAGTTTAGTCCT+CGG | - | chr1_1:11039464-11039483 | Msa0007780:intron | 35.0% | |
| ATGGGGGAATAACATTGTAT+GGG | - | chr1_1:11039792-11039811 | Msa0007780:CDS | 35.0% | |
| TTGAATTCTCCATAGTGCTT+TGG | - | chr1_1:11039855-11039874 | Msa0007780:CDS | 35.0% | |
| ACCTTCAACAGAATCAACCA+AGG | - | chr1_1:11037604-11037623 | Msa0007780:three_prime_UTR | 40.0% | |
| ! | TCCTTGGTTGATTCTGTTGA+AGG | + | chr1_1:11037608-11037627 | None:intergenic | 40.0% |
| ! | GATCAAGAGCACACCATTTA+AGG | + | chr1_1:11037784-11037803 | None:intergenic | 40.0% |
| CTTGATCACTCATCTTGTGT+TGG | - | chr1_1:11037797-11037816 | Msa0007780:intron | 40.0% | |
| AGAGAGGAACAATGAAAGTG+AGG | + | chr1_1:11037853-11037872 | None:intergenic | 40.0% | |
| ACAAATAGGGTTGTGAAGAG+AGG | + | chr1_1:11037869-11037888 | None:intergenic | 40.0% | |
| AAGGAGATAGGATCAACTTC+AGG | + | chr1_1:11037911-11037930 | None:intergenic | 40.0% | |
| ! | ACAAGCTTGTTCAAGGAGAT+AGG | + | chr1_1:11037923-11037942 | None:intergenic | 40.0% |
| GAGAGTGAAGAAGGAAATGA+TGG | + | chr1_1:11037969-11037988 | None:intergenic | 40.0% | |
| TTTGGTACCTTCGGAAGAAA+CGG | + | chr1_1:11037994-11038013 | None:intergenic | 40.0% | |
| !! | TCCTAAGATTCTTGGTGTCT+TGG | - | chr1_1:11038099-11038118 | Msa0007780:intron | 40.0% |
| !! | CCTAAGATTCTTGGTGTCTT+GGG | - | chr1_1:11038100-11038119 | Msa0007780:intron | 40.0% |
| !! | TTTCGGTGCCCCTAAATAAA+TGG | - | chr1_1:11038294-11038313 | Msa0007780:CDS | 40.0% |
| CTGCACCATAACACATTACA+TGG | + | chr1_1:11038373-11038392 | None:intergenic | 40.0% | |
| CATGTAATGTGTTATGGTGC+AGG | - | chr1_1:11038371-11038390 | Msa0007780:CDS | 40.0% | |
| AATGTGTTATGGTGCAGGTA+TGG | - | chr1_1:11038376-11038395 | Msa0007780:CDS | 40.0% | |
| GTATTGGAAATCCAGCACTA+AGG | + | chr1_1:11038582-11038601 | None:intergenic | 40.0% | |
| ! | GGTGTTCACAAGCTTTTTGA+AGG | - | chr1_1:11038715-11038734 | Msa0007780:CDS | 40.0% |
| AGGAACATGTGAGGATTAGA+AGG | - | chr1_1:11038767-11038786 | Msa0007780:CDS | 40.0% | |
| !! | GGGTTCTCTATTGCTAGTTT+TGG | - | chr1_1:11038864-11038883 | Msa0007780:CDS | 40.0% |
| ACCTATCTACAACACAACCA+TGG | - | chr1_1:11039773-11039792 | Msa0007780:CDS | 40.0% | |
| CCTATCTACAACACAACCAT+GGG | - | chr1_1:11039774-11039793 | Msa0007780:CDS | 40.0% | |
| CTATCTACAACACAACCATG+GGG | - | chr1_1:11039775-11039794 | Msa0007780:CDS | 40.0% | |
| TATCTACAACACAACCATGG+GGG | - | chr1_1:11039776-11039795 | Msa0007780:CDS | 40.0% | |
| CATACAATGTTATTCCCCCA+TGG | + | chr1_1:11039793-11039812 | None:intergenic | 40.0% | |
| CATGGGGGAATAACATTGTA+TGG | - | chr1_1:11039791-11039810 | Msa0007780:CDS | 40.0% | |
| ! | ACTCAGAATCCAAAGCACTA+TGG | + | chr1_1:11039867-11039886 | None:intergenic | 40.0% |
| ! | AGTGCTTTGGATTCTGAGTA+AGG | - | chr1_1:11039868-11039887 | Msa0007780:CDS | 40.0% |
| ! | AAAGCCTTGTATATGAGCCA+AGG | - | chr1_1:11039939-11039958 | Msa0007780:CDS | 40.0% |
| CATTCCTTGGCTCATATACA+AGG | + | chr1_1:11039946-11039965 | None:intergenic | 40.0% | |
| ! | TGTGTTGTTGCTGTTGCTGT+TGG | + | chr1_1:11037682-11037701 | None:intergenic | 45.0% |
| ATGATGGCAAGTGCAGATTC+AGG | + | chr1_1:11037953-11037972 | None:intergenic | 45.0% | |
| GAAACGGTAGAGAGTGAAGA+AGG | + | chr1_1:11037978-11037997 | None:intergenic | 45.0% | |
| CAATTGTGATCACAGCTACC+AGG | - | chr1_1:11038071-11038090 | Msa0007780:intron | 45.0% | |
| AAGAATCTTAGGACCGAACC+TGG | + | chr1_1:11038092-11038111 | None:intergenic | 45.0% | |
| ! | AGGTTCGGTCCTAAGATTCT+TGG | - | chr1_1:11038091-11038110 | Msa0007780:intron | 45.0% |
| CCCAAGACACCAAGAATCTT+AGG | + | chr1_1:11038103-11038122 | None:intergenic | 45.0% | |
| ! | CCAGGGCACCATTTATTTAG+GGG | + | chr1_1:11038305-11038324 | None:intergenic | 45.0% |
| ! | CCCAGGGCACCATTTATTTA+GGG | + | chr1_1:11038306-11038325 | None:intergenic | 45.0% |
| CCCTAAATAAATGGTGCCCT+GGG | - | chr1_1:11038303-11038322 | Msa0007780:CDS | 45.0% | |
| ! | TGAATGCTTTCTCTAGCTCG+CGG | + | chr1_1:11038468-11038487 | None:intergenic | 45.0% |
| GGAAATCCAGCACTAAGGTT+TGG | + | chr1_1:11038577-11038596 | None:intergenic | 45.0% | |
| CTTTCATGGCTGTACAGAAC+TGG | - | chr1_1:11038628-11038647 | Msa0007780:intron | 45.0% | |
| !! | CACAAGCTTTTTGAAGGGTG+TGG | - | chr1_1:11038721-11038740 | Msa0007780:CDS | 45.0% |
| CTTCAATTCTGGTGACCTTG+TGG | - | chr1_1:11038909-11038928 | Msa0007780:intron | 45.0% | |
| TGTTCAGCAGTGCAATTGAG+TGG | - | chr1_1:11039095-11039114 | Msa0007780:intron | 45.0% | |
| GGCTTCTTCTTGTGCATCTT+AGG | - | chr1_1:11039116-11039135 | Msa0007780:intron | 45.0% | |
| CATGTGCCATCTTGTTGCAA+TGG | + | chr1_1:11039180-11039199 | None:intergenic | 45.0% | |
| TGCAACAAGATGGCACATGT+TGG | - | chr1_1:11039181-11039200 | Msa0007780:intron | 45.0% | |
| ! | CTCTGATTCAGCAGAAGCAT+TGG | + | chr1_1:11039210-11039229 | None:intergenic | 45.0% |
| GAAAGGAAGAGAGTCTCTGT+GGG | + | chr1_1:11039313-11039332 | None:intergenic | 45.0% | |
| TGAAAGGAAGAGAGTCTCTG+TGG | + | chr1_1:11039314-11039333 | None:intergenic | 45.0% | |
| CCCATGGTTGTGTTGTAGAT+AGG | + | chr1_1:11039777-11039796 | None:intergenic | 45.0% | |
| TATGGGTTTGCACTTGATCG+AGG | - | chr1_1:11039809-11039828 | Msa0007780:CDS | 45.0% | |
| ! | GCTTTGGATTCTGAGTAAGG+TGG | - | chr1_1:11039871-11039890 | Msa0007780:CDS | 45.0% |
| CTCTCTACCGTTTCTTCCGA+AGG | - | chr1_1:11037984-11038003 | Msa0007780:intron | 50.0% | |
| GTGATCACAGCTACCAGGTT+CGG | - | chr1_1:11038076-11038095 | Msa0007780:intron | 50.0% | |
| CCCCTAAATAAATGGTGCCC+TGG | - | chr1_1:11038302-11038321 | Msa0007780:CDS | 50.0% | |
| ! | GCCCAGGGCACCATTTATTT+AGG | + | chr1_1:11038307-11038326 | None:intergenic | 50.0% |
| GACACTACATACGTTCGTCG+CGG | - | chr1_1:11038436-11038455 | Msa0007780:CDS | 50.0% | |
| ! | GAATGCTTTCTCTAGCTCGC+GGG | + | chr1_1:11038467-11038486 | None:intergenic | 50.0% |
| TCAGCACCAAACCTTAGTGC+TGG | - | chr1_1:11038568-11038587 | Msa0007780:intron | 50.0% | |
| GTAACATAGGGTGGCCCTGA+GGG | + | chr1_1:11038336-11038355 | None:intergenic | 55.0% | |
| TGTAACATAGGGTGGCCCTG+AGG | + | chr1_1:11038337-11038356 | None:intergenic | 55.0% | |
| ! | GAAGGGTGTGGATCAGAAGC+AGG | - | chr1_1:11038733-11038752 | Msa0007780:CDS | 55.0% |
| CATAGGGTGGCCCTGAGGGT+GGG | + | chr1_1:11038332-11038351 | None:intergenic | 65.0% | |
| ACATAGGGTGGCCCTGAGGG+TGG | + | chr1_1:11038333-11038352 | None:intergenic | 65.0% | |
| CCCTGAGGGTGGGCAGCCCA+GGG | + | chr1_1:11038322-11038341 | None:intergenic | 75.0% | |
| CCCTGGGCTGCCCACCCTCA+GGG | - | chr1_1:11038319-11038338 | Msa0007780:CDS | 75.0% | |
| ! | GCCCTGGGCTGCCCACCCTC+AGG | - | chr1_1:11038318-11038337 | Msa0007780:CDS | 80.0% |
| ! | GCCCTGAGGGTGGGCAGCCC+AGG | + | chr1_1:11038323-11038342 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11037469 | 11040094 | 11037469 | ID=Msa0007780;Name=Msa0007780 |
| chr1_1 | mRNA | 11037469 | 11040094 | 11037469 | ID=Msa0007780-mRNA-1;Parent=Msa0007780;Name=Msa0007780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|0.66|0.75|1|1|1|4|187|362 |
| chr1_1 | exon | 11037469 | 11037792 | 11037469 | ID=Msa0007780-mRNA-1:exon:4107;Parent=Msa0007780-mRNA-1 |
| chr1_1 | exon | 11038213 | 11038471 | 11038213 | ID=Msa0007780-mRNA-1:exon:4106;Parent=Msa0007780-mRNA-1 |
| chr1_1 | exon | 11038633 | 11038918 | 11038633 | ID=Msa0007780-mRNA-1:exon:4105;Parent=Msa0007780-mRNA-1 |
| chr1_1 | exon | 11039558 | 11040094 | 11039558 | ID=Msa0007780-mRNA-1:exon:4104;Parent=Msa0007780-mRNA-1 |
| chr1_1 | five_prime_UTR | 11039965 | 11040094 | 11039965 | ID=Msa0007780-mRNA-1:five_prime_utr;Parent=Msa0007780-mRNA-1 |
| chr1_1 | CDS | 11039558 | 11039964 | 11039558 | ID=Msa0007780-mRNA-1:cds;Parent=Msa0007780-mRNA-1 |
| chr1_1 | CDS | 11038633 | 11038918 | 11038633 | ID=Msa0007780-mRNA-1:cds;Parent=Msa0007780-mRNA-1 |
| chr1_1 | CDS | 11038213 | 11038471 | 11038213 | ID=Msa0007780-mRNA-1:cds;Parent=Msa0007780-mRNA-1 |
| chr1_1 | CDS | 11037656 | 11037792 | 11037656 | ID=Msa0007780-mRNA-1:cds;Parent=Msa0007780-mRNA-1 |
| chr1_1 | three_prime_UTR | 11037469 | 11037655 | 11037469 | ID=Msa0007780-mRNA-1:three_prime_utr;Parent=Msa0007780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
