AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056720 MtrunA17_Chr1g0147671 98.430 446 7 0 1 446 1 446 0.0 896
Msa0056720 MtrunA17_Chr3g0099911 32.667 450 281 7 13 443 1 447 5.56e-79 252
Msa0056720 MtrunA17_Chr2g0289391 33.005 406 255 3 54 443 25 429 9.72e-72 233
Msa0056720 MtrunA17_Chr8g0377091 29.157 415 270 6 46 444 43 449 3.78e-57 195
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056720 AT2G21080.1 60.291 413 137 10 40 445 21 413 6.63e-162 463
Msa0056720 AT3G20300.1 35.225 423 252 4 41 443 29 449 5.94e-84 265
Msa0056720 AT1G50630.1 35.714 406 228 6 53 429 35 436 4.12e-79 253
Msa0056720 AT1G50630.2 37.748 302 186 2 53 354 35 334 7.06e-66 218
Msa0056720 AT4G03820.1 31.332 383 243 4 68 431 40 421 3.11e-58 197
Msa0056720 AT4G22270.1 31.552 393 252 3 68 444 43 434 7.36e-58 197
Msa0056720 AT4G03820.2 31.332 383 243 4 68 431 40 421 7.54e-58 197
Msa0056720 AT4G03820.3 31.332 383 243 4 68 431 89 470 7.78e-58 198
Msa0056720 AT4G22270.2 31.316 380 244 3 68 431 43 421 1.55e-57 196
Msa0056720 AT4G03820.4 31.332 383 243 4 68 431 89 470 2.13e-57 197
Msa0056720 AT1G67570.1 30.500 400 248 6 66 444 62 452 6.56e-56 192
Msa0056720 AT1G67570.2 33.065 248 159 2 117 364 112 352 1.21e-40 150

Find 80 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAGAGCACACCATTTA+AGG 0.198157 1_2:-12378175 None:intergenic
AGAAGCAGGTGTTATATTTA+AGG 0.203283 1_2:+12379150 Msa0056720:CDS
GGCTTCTTCTTGTGCATCTT+AGG 0.235318 1_2:+12379514 Msa0056720:CDS
GAGAAGACATTCTTCAATTC+TGG 0.252926 1_2:+12379301 Msa0056720:CDS
GGGTTCTCTATTGCTAGTTT+TGG 0.258616 1_2:+12379267 Msa0056720:CDS
ACTTTCGGATATGCCTTAAA+TGG 0.275331 1_2:+12378162 Msa0056720:CDS
AAGCAGATACTTGAACAAAT+AGG 0.282476 1_2:-12378274 None:intergenic
TGAGGATTAGAAGGCAATTA+TGG 0.287173 1_2:+12379179 Msa0056720:CDS
AGAGGAATTATCAATGTTAA+TGG 0.296185 1_2:-12378027 None:intergenic
TACAATGAGTGTTAGTCAAT+TGG 0.314349 1_2:+12379246 Msa0056720:CDS
TTGTATTTATGTTACTTTCA+TGG 0.331455 1_2:+12379017 Msa0056720:CDS
TTTCAGACTAGACAATCTTT+AGG 0.339756 1_2:+12379727 Msa0056720:CDS
GTCAGAGAAAGATACTCTTT+TGG 0.360397 1_2:-12378051 None:intergenic
TCCTTGGTTGATTCTGTTGA+AGG 0.377806 1_2:-12377999 None:intergenic
AATGTTAATGGTTGTGTCCT+TGG 0.382680 1_2:-12378015 None:intergenic
CTTCAAATATTGAGATTTGA+AGG 0.390973 1_2:+12379097 Msa0056720:CDS
AGGAACATGTGAGGATTAGA+AGG 0.398671 1_2:+12379170 Msa0056720:CDS
TTGAATTCTCCATAGTGCTT+TGG 0.398782 1_2:+12380253 Msa0056720:CDS
CTTTCATGGCTGTACAGAAC+TGG 0.398954 1_2:+12379031 Msa0056720:CDS
ATGATGGCAAGTGCAGATTC+AGG 0.410877 1_2:-12378344 None:intergenic
AGCAGATACTTGAACAAATA+GGG 0.411563 1_2:-12378273 None:intergenic
TTGATGAACTAAGAAACTTT+CGG 0.420225 1_2:+12378147 Msa0056720:CDS
GAGAGACTATAGAAGTAAGA+AGG 0.424878 1_2:-12377884 None:intergenic
ACAAACACAATTGAGTGTAT+TGG 0.427450 1_2:-12378998 None:intergenic
ACAATGAGTGTTAGTCAATT+GGG 0.429137 1_2:+12379247 Msa0056720:CDS
ACAAGCTTGTTCAAGGAGAT+AGG 0.430827 1_2:-12378314 None:intergenic
GTGTATCATTATATCTCATA+TGG 0.437531 1_2:+12380363 Msa0056720:three_prime_UTR
AGTGCTTTGGATTCTGAGTA+AGG 0.442534 1_2:+12380266 Msa0056720:CDS
TCTTAGTTCATCAAAGATCA+TGG 0.445556 1_2:-12378138 None:intergenic
CTCTCTACCGTTTCTTCCGA+AGG 0.449304 1_2:+12378378 Msa0056720:CDS
ACTCAGAATCCAAAGCACTA+TGG 0.455666 1_2:-12380262 None:intergenic
GGAAATCCAGCACTAAGGTT+TGG 0.455769 1_2:-12378977 None:intergenic
TGTGTTGTTGCTGTTGCTGT+TGG 0.458307 1_2:-12378073 None:intergenic
CCCATGGTTGTGTTGTAGAT+AGG 0.469534 1_2:-12380172 None:intergenic
CAAATCTCAATATTTGAAGC+TGG 0.469941 1_2:-12379093 None:intergenic
ATATAATGATACACATTCCT+TGG 0.471917 1_2:-12380354 None:intergenic
CATTCCTTGGCTCATATACA+AGG 0.472347 1_2:-12380341 None:intergenic
GAAACGGTAGAGAGTGAAGA+AGG 0.481723 1_2:-12378369 None:intergenic
TTGTTTCAATTGCAACAAGA+TGG 0.484621 1_2:+12379569 Msa0056720:CDS
TATTTGAACAAGCTTGTTCA+AGG 0.484907 1_2:-12378321 None:intergenic
GAGAGTGAAGAAGGAAATGA+TGG 0.494904 1_2:-12378360 None:intergenic
TCAGCACCAAACCTTAGTGC+TGG 0.495418 1_2:+12378971 Msa0056720:CDS
AATTATGGATTATAAGTCAT+AGG 0.501167 1_2:+12379194 Msa0056720:CDS
ATCATTATATCTCATATGGC+TGG 0.514071 1_2:+12380367 Msa0056720:three_prime_UTR
CTTGATCACTCATCTTGTGT+TGG 0.518508 1_2:+12378191 Msa0056720:CDS
TAAAGATTGTCTAGTCTGAA+AGG 0.525351 1_2:-12379725 None:intergenic
GAAGGGTGTGGATCAGAAGC+AGG 0.525748 1_2:+12379136 Msa0056720:CDS
ATCAGAATCACTACTATCAC+TGG 0.527982 1_2:-12379659 None:intergenic
CCTATCTACAACACAACCAT+GGG 0.534196 1_2:+12380172 Msa0056720:CDS
CTAAGAATAGAAGTTGCCTT+AGG 0.539238 1_2:-12378802 None:intergenic
AAGGAGATAGGATCAACTTC+AGG 0.540232 1_2:-12378302 None:intergenic
AGAGAGGAACAATGAAAGTG+AGG 0.542144 1_2:-12378244 None:intergenic
CTTCAATTCTGGTGACCTTG+TGG 0.547529 1_2:+12379312 Msa0056720:CDS
TTTGGTACCTTCGGAAGAAA+CGG 0.549992 1_2:-12378385 None:intergenic
AAAATCACACATAGAGCTCA+AGG 0.557605 1_2:+12379544 Msa0056720:CDS
GCAAGTTCTACAAAGAAAGA+AGG 0.565294 1_2:-12378914 None:intergenic
GTTCTACAAAGAAAGAAGGT+AGG 0.566351 1_2:-12378910 None:intergenic
ATTCTTTATAATCTGTTGTG+TGG 0.569662 1_2:+12379222 Msa0056720:CDS
AATGAAAGTGAGGAAGATGA+AGG 0.573099 1_2:-12378234 None:intergenic
GTATTGGAAATCCAGCACTA+AGG 0.581099 1_2:-12378982 None:intergenic
TATGATGCAGGTATGGCCTA+AGG 0.582377 1_2:+12378786 Msa0056720:intron
ATTCAAGTCTAGAAAAGTGA+AGG 0.587761 1_2:+12380309 Msa0056720:three_prime_UTR
GAATGCTTTCTCTAGCTCGC+GGG 0.594449 1_2:-12378867 None:intergenic
AAAGCCTTGTATATGAGCCA+AGG 0.598222 1_2:+12380337 Msa0056720:three_prime_UTR
TAAGATGGTTGAAGTAACAA+AGG 0.601645 1_2:-12378101 None:intergenic
ACCTATCTACAACACAACCA+TGG 0.603127 1_2:+12380171 Msa0056720:CDS
TATGGGTTTGCACTTGATCG+AGG 0.603951 1_2:+12380207 Msa0056720:CDS
TATTGATATATGTATGTCTG+AGG 0.613114 1_2:-12379683 None:intergenic
ACAAATAGGGTTGTGAAGAG+AGG 0.616885 1_2:-12378260 None:intergenic
GAAAGGAAGAGAGTCTCTGT+GGG 0.624738 1_2:-12379708 None:intergenic
TGAATGCTTTCTCTAGCTCG+CGG 0.629956 1_2:-12378868 None:intergenic
TGTTCAGCAGTGCAATTGAG+TGG 0.630731 1_2:+12379493 Msa0056720:CDS
TGAAAGGAAGAGAGTCTCTG+TGG 0.638408 1_2:-12379709 None:intergenic
GCTTTGGATTCTGAGTAAGG+TGG 0.656572 1_2:+12380269 Msa0056720:CDS
TTATATTTAAGGAACATGTG+AGG 0.659712 1_2:+12379161 Msa0056720:CDS
TGCAACAAGATGGCACATGT+TGG 0.671190 1_2:+12379579 Msa0056720:CDS
ACCTTCAACAGAATCAACCA+AGG 0.695999 1_2:+12377998 Msa0056720:CDS
CTATCTACAACACAACCATG+GGG 0.709943 1_2:+12380173 Msa0056720:CDS
GACACTACATATGTTCGTCG+CGG 0.737129 1_2:+12378839 Msa0056720:CDS
TATCTACAACACAACCATGG+GGG 0.737474 1_2:+12380174 Msa0056720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAAAAATTCTATTTA+AGG - chr1_2:12379443-12379462 None:intergenic 10.0%
!!! AAGAAGGAAAATAATTTTTT+GGG - chr1_2:12377871-12377890 None:intergenic 15.0%
!!! TAAGAAGGAAAATAATTTTT+TGG - chr1_2:12377872-12377891 None:intergenic 15.0%
!!! AATTTTTATGAGAGAATTAT+GGG - chr1_2:12377917-12377936 None:intergenic 15.0%
!!! TAATTTTTATGAGAGAATTA+TGG - chr1_2:12377918-12377937 None:intergenic 15.0%
!! AAAAATGCAAGAAAAATATT+AGG - chr1_2:12378549-12378568 None:intergenic 15.0%
!! ACTGAAATATTATTTATACT+TGG - chr1_2:12378676-12378695 None:intergenic 15.0%
!!! ACTATGATGAAAAATTGTTT+TGG - chr1_2:12378406-12378425 None:intergenic 20.0%
!! TTCAATAGAATTAATCAAAG+CGG + chr1_2:12378616-12378635 Msa0056720:intron 20.0%
!!! TTGTATTTATGTTACTTTCA+TGG + chr1_2:12379017-12379036 Msa0056720:CDS 20.0%
!!! AATTATGGATTATAAGTCAT+AGG + chr1_2:12379194-12379213 Msa0056720:CDS 20.0%
!!! ATTTTTTCTAATTGTGTGAT+TGG + chr1_2:12379451-12379470 Msa0056720:intron 20.0%
! TGAATTGTTGAGACTAAAAA+TGG - chr1_2:12377942-12377961 None:intergenic 25.0%
! AGAGGAATTATCAATGTTAA+TGG - chr1_2:12378030-12378049 None:intergenic 25.0%
! TTGATGAACTAAGAAACTTT+CGG + chr1_2:12378147-12378166 Msa0056720:CDS 25.0%
!!! AAAAATTGTTTTGGTACCTT+CGG - chr1_2:12378397-12378416 None:intergenic 25.0%
!! CAATTTTATTATTTCGCCTA+GGG - chr1_2:12378511-12378530 None:intergenic 25.0%
!! ACAATTTTATTATTTCGCCT+AGG - chr1_2:12378512-12378531 None:intergenic 25.0%
! TAGTGTATGTTTGTAACTTA+GGG - chr1_2:12378755-12378774 None:intergenic 25.0%
! TTAGTGTATGTTTGTAACTT+AGG - chr1_2:12378756-12378775 None:intergenic 25.0%
! CTTCAAATATTGAGATTTGA+AGG + chr1_2:12379097-12379116 Msa0056720:CDS 25.0%
! TTATATTTAAGGAACATGTG+AGG + chr1_2:12379161-12379180 Msa0056720:CDS 25.0%
! ATTCTTTATAATCTGTTGTG+TGG + chr1_2:12379222-12379241 Msa0056720:CDS 25.0%
! TATTGATATATGTATGTCTG+AGG - chr1_2:12379686-12379705 None:intergenic 25.0%
!!! CACATTATCTTTTTCACTAT+TGG + chr1_2:12380112-12380131 Msa0056720:intron 25.0%
! ATATAATGATACACATTCCT+TGG - chr1_2:12380357-12380376 None:intergenic 25.0%
! GTGTATCATTATATCTCATA+TGG + chr1_2:12380363-12380382 Msa0056720:three_prime_UTR 25.0%
TAAGATGGTTGAAGTAACAA+AGG - chr1_2:12378104-12378123 None:intergenic 30.0%
!! GATTTTGATCTTGCATAAGA+TGG - chr1_2:12378119-12378138 None:intergenic 30.0%
TCTTAGTTCATCAAAGATCA+TGG - chr1_2:12378141-12378160 None:intergenic 30.0%
AGCAGATACTTGAACAAATA+GGG - chr1_2:12378276-12378295 None:intergenic 30.0%
AAGCAGATACTTGAACAAAT+AGG - chr1_2:12378277-12378296 None:intergenic 30.0%
! TATTTGAACAAGCTTGTTCA+AGG - chr1_2:12378324-12378343 None:intergenic 30.0%
ACAAACACAATTGAGTGTAT+TGG - chr1_2:12379001-12379020 None:intergenic 30.0%
! CAAATCTCAATATTTGAAGC+TGG - chr1_2:12379096-12379115 None:intergenic 30.0%
! AGAAGCAGGTGTTATATTTA+AGG + chr1_2:12379150-12379169 Msa0056720:CDS 30.0%
TACAATGAGTGTTAGTCAAT+TGG + chr1_2:12379246-12379265 Msa0056720:CDS 30.0%
ACAATGAGTGTTAGTCAATT+GGG + chr1_2:12379247-12379266 Msa0056720:CDS 30.0%
ACATTAATGTACTTACCACA+AGG - chr1_2:12379330-12379349 None:intergenic 30.0%
TTGTTTCAATTGCAACAAGA+TGG + chr1_2:12379569-12379588 Msa0056720:CDS 30.0%
TAAAGATTGTCTAGTCTGAA+AGG - chr1_2:12379728-12379747 None:intergenic 30.0%
TTTCAGACTAGACAATCTTT+AGG + chr1_2:12379727-12379746 Msa0056720:CDS 30.0%
AACTAAAATAAACACATCCG+AGG - chr1_2:12379882-12379901 None:intergenic 30.0%
ATTCAAGTCTAGAAAAGTGA+AGG + chr1_2:12380309-12380328 Msa0056720:three_prime_UTR 30.0%
ATCATTATATCTCATATGGC+TGG + chr1_2:12380367-12380386 Msa0056720:three_prime_UTR 30.0%
GAGAGACTATAGAAGTAAGA+AGG - chr1_2:12377887-12377906 None:intergenic 35.0%
AATGTTAATGGTTGTGTCCT+TGG - chr1_2:12378018-12378037 None:intergenic 35.0%
!! GAAAGATACTCTTTTGGAAG+AGG - chr1_2:12378048-12378067 None:intergenic 35.0%
! GTCAGAGAAAGATACTCTTT+TGG - chr1_2:12378054-12378073 None:intergenic 35.0%
ACTTTCGGATATGCCTTAAA+TGG + chr1_2:12378162-12378181 Msa0056720:CDS 35.0%
AATGAAAGTGAGGAAGATGA+AGG - chr1_2:12378237-12378256 None:intergenic 35.0%
TTGAAATTGTGATCACAGCT+AGG + chr1_2:12378462-12378481 Msa0056720:intron 35.0%
TGAAATTGTGATCACAGCTA+GGG + chr1_2:12378463-12378482 Msa0056720:intron 35.0%
TTTCAGTGCCCCTAAAAAAA+TGG + chr1_2:12378689-12378708 Msa0056720:intron 35.0%
AAACCAATGTGTTATGATGC+AGG + chr1_2:12378774-12378793 Msa0056720:intron 35.0%
ATACCTGCATCATAACACAT+TGG - chr1_2:12378780-12378799 None:intergenic 35.0%
AATGTGTTATGATGCAGGTA+TGG + chr1_2:12378779-12378798 Msa0056720:intron 35.0%
CTAAGAATAGAAGTTGCCTT+AGG - chr1_2:12378805-12378824 None:intergenic 35.0%
GTTCTACAAAGAAAGAAGGT+AGG - chr1_2:12378913-12378932 None:intergenic 35.0%
GCAAGTTCTACAAAGAAAGA+AGG - chr1_2:12378917-12378936 None:intergenic 35.0%
! GTGTTCACAAGCTTTTTGAA+GGG + chr1_2:12379119-12379138 Msa0056720:CDS 35.0%
TGAGGATTAGAAGGCAATTA+TGG + chr1_2:12379179-12379198 Msa0056720:CDS 35.0%
GAGAAGACATTCTTCAATTC+TGG + chr1_2:12379301-12379320 Msa0056720:CDS 35.0%
AAAATCACACATAGAGCTCA+AGG + chr1_2:12379544-12379563 Msa0056720:CDS 35.0%
ATCAGAATCACTACTATCAC+TGG - chr1_2:12379662-12379681 None:intergenic 35.0%
TTCTTAGTGAGTTTAGTCCT+CGG + chr1_2:12379862-12379881 Msa0056720:intron 35.0%
ATGGGGGAATAACATTGTAT+GGG + chr1_2:12380190-12380209 Msa0056720:CDS 35.0%
TTGAATTCTCCATAGTGCTT+TGG + chr1_2:12380253-12380272 Msa0056720:CDS 35.0%
ACCTTCAACAGAATCAACCA+AGG + chr1_2:12377998-12378017 Msa0056720:CDS 40.0%
! TCCTTGGTTGATTCTGTTGA+AGG - chr1_2:12378002-12378021 None:intergenic 40.0%
! GATCAAGAGCACACCATTTA+AGG - chr1_2:12378178-12378197 None:intergenic 40.0%
CTTGATCACTCATCTTGTGT+TGG + chr1_2:12378191-12378210 Msa0056720:CDS 40.0%
AGAGAGGAACAATGAAAGTG+AGG - chr1_2:12378247-12378266 None:intergenic 40.0%
ACAAATAGGGTTGTGAAGAG+AGG - chr1_2:12378263-12378282 None:intergenic 40.0%
AAGGAGATAGGATCAACTTC+AGG - chr1_2:12378305-12378324 None:intergenic 40.0%
! ACAAGCTTGTTCAAGGAGAT+AGG - chr1_2:12378317-12378336 None:intergenic 40.0%
GAGAGTGAAGAAGGAAATGA+TGG - chr1_2:12378363-12378382 None:intergenic 40.0%
TTTGGTACCTTCGGAAGAAA+CGG - chr1_2:12378388-12378407 None:intergenic 40.0%
GAAATTGTGATCACAGCTAG+GGG + chr1_2:12378464-12378483 Msa0056720:intron 40.0%
!!! CCAGGACACCATTTTTTTAG+GGG - chr1_2:12378700-12378719 None:intergenic 40.0%
!!! CCCAGGACACCATTTTTTTA+GGG - chr1_2:12378701-12378720 None:intergenic 40.0%
CCCTAAAAAAATGGTGTCCT+GGG + chr1_2:12378698-12378717 Msa0056720:intron 40.0%
GTATTGGAAATCCAGCACTA+AGG - chr1_2:12378985-12379004 None:intergenic 40.0%
! GGTGTTCACAAGCTTTTTGA+AGG + chr1_2:12379118-12379137 Msa0056720:CDS 40.0%
AGGAACATGTGAGGATTAGA+AGG + chr1_2:12379170-12379189 Msa0056720:CDS 40.0%
!! GGGTTCTCTATTGCTAGTTT+TGG + chr1_2:12379267-12379286 Msa0056720:CDS 40.0%
ACCTATCTACAACACAACCA+TGG + chr1_2:12380171-12380190 Msa0056720:CDS 40.0%
CCTATCTACAACACAACCAT+GGG + chr1_2:12380172-12380191 Msa0056720:CDS 40.0%
CTATCTACAACACAACCATG+GGG + chr1_2:12380173-12380192 Msa0056720:CDS 40.0%
TATCTACAACACAACCATGG+GGG + chr1_2:12380174-12380193 Msa0056720:CDS 40.0%
CATACAATGTTATTCCCCCA+TGG - chr1_2:12380191-12380210 None:intergenic 40.0%
CATGGGGGAATAACATTGTA+TGG + chr1_2:12380189-12380208 Msa0056720:CDS 40.0%
! ACTCAGAATCCAAAGCACTA+TGG - chr1_2:12380265-12380284 None:intergenic 40.0%
! AGTGCTTTGGATTCTGAGTA+AGG + chr1_2:12380266-12380285 Msa0056720:CDS 40.0%
! AAAGCCTTGTATATGAGCCA+AGG + chr1_2:12380337-12380356 Msa0056720:three_prime_UTR 40.0%
CATTCCTTGGCTCATATACA+AGG - chr1_2:12380344-12380363 None:intergenic 40.0%
! TGTGTTGTTGCTGTTGCTGT+TGG - chr1_2:12378076-12378095 None:intergenic 45.0%
ATGATGGCAAGTGCAGATTC+AGG - chr1_2:12378347-12378366 None:intergenic 45.0%
GAAACGGTAGAGAGTGAAGA+AGG - chr1_2:12378372-12378391 None:intergenic 45.0%
CCCCTAAAAAAATGGTGTCC+TGG + chr1_2:12378697-12378716 Msa0056720:intron 45.0%
!!! GCCCAGGACACCATTTTTTT+AGG - chr1_2:12378702-12378721 None:intergenic 45.0%
TATGATGCAGGTATGGCCTA+AGG + chr1_2:12378786-12378805 Msa0056720:intron 45.0%
GACACTACATATGTTCGTCG+CGG + chr1_2:12378839-12378858 Msa0056720:CDS 45.0%
! TGAATGCTTTCTCTAGCTCG+CGG - chr1_2:12378871-12378890 None:intergenic 45.0%
GGAAATCCAGCACTAAGGTT+TGG - chr1_2:12378980-12378999 None:intergenic 45.0%
CTTTCATGGCTGTACAGAAC+TGG + chr1_2:12379031-12379050 Msa0056720:CDS 45.0%
!! CACAAGCTTTTTGAAGGGTG+TGG + chr1_2:12379124-12379143 Msa0056720:CDS 45.0%
CTTCAATTCTGGTGACCTTG+TGG + chr1_2:12379312-12379331 Msa0056720:CDS 45.0%
TGTTCAGCAGTGCAATTGAG+TGG + chr1_2:12379493-12379512 Msa0056720:CDS 45.0%
GGCTTCTTCTTGTGCATCTT+AGG + chr1_2:12379514-12379533 Msa0056720:CDS 45.0%
TGCAACAAGATGGCACATGT+TGG + chr1_2:12379579-12379598 Msa0056720:CDS 45.0%
GAAAGGAAGAGAGTCTCTGT+GGG - chr1_2:12379711-12379730 None:intergenic 45.0%
TGAAAGGAAGAGAGTCTCTG+TGG - chr1_2:12379712-12379731 None:intergenic 45.0%
CCCATGGTTGTGTTGTAGAT+AGG - chr1_2:12380175-12380194 None:intergenic 45.0%
TATGGGTTTGCACTTGATCG+AGG + chr1_2:12380207-12380226 Msa0056720:CDS 45.0%
! GCTTTGGATTCTGAGTAAGG+TGG + chr1_2:12380269-12380288 Msa0056720:CDS 45.0%
CTCTCTACCGTTTCTTCCGA+AGG + chr1_2:12378378-12378397 Msa0056720:CDS 50.0%
TTGTGATCACAGCTAGGGGT+CGG + chr1_2:12378468-12378487 Msa0056720:intron 50.0%
! CCTAGGGCACCAAGAATCTT+AGG - chr1_2:12378495-12378514 None:intergenic 50.0%
!! CCTAAGATTCTTGGTGCCCT+AGG + chr1_2:12378492-12378511 Msa0056720:intron 50.0%
GTAACTTAGGGTAGCCCTGA+GGG - chr1_2:12378743-12378762 None:intergenic 50.0%
TGTAACTTAGGGTAGCCCTG+AGG - chr1_2:12378744-12378763 None:intergenic 50.0%
! GAATGCTTTCTCTAGCTCGC+GGG - chr1_2:12378870-12378889 None:intergenic 50.0%
TCAGCACCAAACCTTAGTGC+TGG + chr1_2:12378971-12378990 Msa0056720:CDS 50.0%
GGGGTCGGTCCTAAGATTCT+TGG + chr1_2:12378483-12378502 Msa0056720:intron 55.0%
! GAAGGGTGTGGATCAGAAGC+AGG + chr1_2:12379136-12379155 Msa0056720:CDS 55.0%
CTTAGGGTAGCCCTGAGGGT+GGG - chr1_2:12378739-12378758 None:intergenic 60.0%
ACTTAGGGTAGCCCTGAGGG+TGG - chr1_2:12378740-12378759 None:intergenic 60.0%
AGGGTAGCCCTGAGGGTGGG+CGG - chr1_2:12378736-12378755 None:intergenic 70.0%
AGCCCTGAGGGTGGGCGGGA+GGG - chr1_2:12378731-12378750 None:intergenic 75.0%
TAGCCCTGAGGGTGGGCGGG+AGG - chr1_2:12378732-12378751 None:intergenic 75.0%
GGGTAGCCCTGAGGGTGGGC+GGG - chr1_2:12378735-12378754 None:intergenic 75.0%
! CTGAGGGTGGGCGGGAGGGG+CGG - chr1_2:12378727-12378746 None:intergenic 80.0%
! GCCCCTCCCGCCCACCCTCA+GGG + chr1_2:12378726-12378745 Msa0056720:intron 80.0%
! GCCCTGAGGGTGGGCGGGAG+GGG - chr1_2:12378730-12378749 None:intergenic 80.0%
! CGCCCCTCCCGCCCACCCTC+AGG + chr1_2:12378725-12378744 Msa0056720:intron 85.0%
! GGCGGGAGGGGCGGCAGCCC+AGG - chr1_2:12378718-12378737 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12377862 12380492 12377862 ID=Msa0056720;Name=Msa0056720
chr1_2 mRNA 12377862 12380492 12377862 ID=Msa0056720-mRNA-1;Parent=Msa0056720;Name=Msa0056720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=131|1|1|1|1|1|4|187|446
chr1_2 exon 12377862 12378399 12377862 ID=Msa0056720-mRNA-1:exon:4779;Parent=Msa0056720-mRNA-1
chr1_2 exon 12378796 12379333 12378796 ID=Msa0056720-mRNA-1:exon:4780;Parent=Msa0056720-mRNA-1
chr1_2 exon 12379490 12379748 12379490 ID=Msa0056720-mRNA-1:exon:4781;Parent=Msa0056720-mRNA-1
chr1_2 exon 12380169 12380492 12380169 ID=Msa0056720-mRNA-1:exon:4782;Parent=Msa0056720-mRNA-1
chr1_2 five_prime_UTR 12377862 12377992 12377862 ID=Msa0056720-mRNA-1:five_prime_utr;Parent=Msa0056720-mRNA-1
chr1_2 CDS 12377993 12378399 12377993 ID=Msa0056720-mRNA-1:cds;Parent=Msa0056720-mRNA-1
chr1_2 CDS 12378796 12379333 12378796 ID=Msa0056720-mRNA-1:cds;Parent=Msa0056720-mRNA-1
chr1_2 CDS 12379490 12379748 12379490 ID=Msa0056720-mRNA-1:cds;Parent=Msa0056720-mRNA-1
chr1_2 CDS 12380169 12380305 12380169 ID=Msa0056720-mRNA-1:cds;Parent=Msa0056720-mRNA-1
chr1_2 three_prime_UTR 12380306 12380492 12380306 ID=Msa0056720-mRNA-1:three_prime_utr;Parent=Msa0056720-mRNA-1
Gene Sequence

>Msa0056720

ATGAAACCTTCAACAGAATCAACCAAGGACACAACCATTAACATTGATAATTCCTCTTCCAAAAGAGTATCTTTCTCTGACCAACAGCAACAGCAACAACACAGTGTTCCTTTGTTACTTCAACCATCTTATGCAAGATCAAAATCCATGATCTTTGATGAACTAAGAAACTTTCGGATATGCCTTAAATGGTGTGCTCTTGATCACTCATCTTGTGTTGGAAAACTCATCTCTTATGTTTCCTTCATCTTCCTCACTTTCATTGTTCCTCTCTTCACAACCCTATTTGTTCAAGTATCTGCTTCTTCTCCTGAAGTTGATCCTATCTCCTTGAACAAGCTTGTTCAAATACCTGAATCTGCACTTGCCATCATTTCCTTCTTCACTCTCTACCGTTTCTTCCGAAGGTATGGCCTAAGGCAACTTCTATTCTTAGATGCATTGCAAGATGACACTACATATGTTCGTCGCGGCTACGCCCGCGAGCTAGAGAAAGCATTCAGATACTTAGCATACATAATCCTACCTTCTTTCTTTGTAGAACTTGCACACAAAATCATATTCTTCTCAGCAGTTAAAATTTCAGCACCAAACCTTAGTGCTGGATTTCCAATACACTCAATTGTGTTTGTATTTATGTTACTTTCATGGCTGTACAGAACTGGAGTGTACTTGTTAGTATGTGTTATTTTCAAATTAACTTGCCAGCTTCAAATATTGAGATTTGAAGGTGTTCACAAGCTTTTTGAAGGGTGTGGATCAGAAGCAGGTGTTATATTTAAGGAACATGTGAGGATTAGAAGGCAATTATGGATTATAAGTCATAGGTATAGATTCTTTATAATCTGTTGTGTGGTTACAATGAGTGTTAGTCAATTGGGTTCTCTATTGCTAGTTTTGGCTTCTAAGTCAGAGAAGACATTCTTCAATTCTGGTGACCTTGTGATATGTTCAGCAGTGCAATTGAGTGGCTTCTTCTTGTGCATCTTAGGTGCTGCAAAAATCACACATAGAGCTCAAGGAATTGTTTCAATTGCAACAAGATGGCACATGTTGGTGACTAATGCTTCTGCTGAATCAGAGCAATGCAAAGATGATATGTCTGAAGCTCTAGCCAGTGATAGTAGTGATTCTGATTCCTCAGACATACATATATCAATAATCCCACAGAGACTCTCTTCCTTTCAGACTAGACAATCTTTAGTGACCTATCTACAACACAACCATGGGGGAATAACATTGTATGGGTTTGCACTTGATCGAGGAATGCTTCATACTCTATTTGCATTTGAATTCTCCATAGTGCTTTGGATTCTGAGTAAGGTGGTTGTCTTAGAATAA

Protein sequence

>Msa0056720

MKPSTESTKDTTINIDNSSSKRVSFSDQQQQQQHSVPLLLQPSYARSKSMIFDELRNFRICLKWCALDHSSCVGKLISYVSFIFLTFIVPLFTTLFVQVSASSPEVDPISLNKLVQIPESALAIISFFTLYRFFRRYGLRQLLFLDALQDDTTYVRRGYARELEKAFRYLAYIILPSFFVELAHKIIFFSAVKISAPNLSAGFPIHSIVFVFMLLSWLYRTGVYLLVCVIFKLTCQLQILRFEGVHKLFEGCGSEAGVIFKEHVRIRRQLWIISHRYRFFIICCVVTMSVSQLGSLLLVLASKSEKTFFNSGDLVICSAVQLSGFFLCILGAAKITHRAQGIVSIATRWHMLVTNASAESEQCKDDMSEALASDSSDSDSSDIHISIIPQRLSSFQTRQSLVTYLQHNHGGITLYGFALDRGMLHTLFAFEFSIVLWILSKVVVLE*